gi (NCBI databse: ES frame +2 (NCBI: databse

Size: px
Start display at page:

Download "gi (NCBI databse: ES frame +2 (NCBI: databse"

Transcription

1 Figure legend for supplemental tables (S1-S6). The predicted and annotated amino acid sequences for the different LEA proteins found in the available databases (378) were analyzed using MEME software (Bailey et al., 2006) to detect conserved motifs, which allowed their classification into six groups. The motif arrangement and/or the sequence homology in the motifs from some heterogeneous groups lead to subgroup divisions (LEA2, LEA3, LEA4). Although similar colors and numbers were used to indicate the motifs in the different groups, they do not imply any sequence relation among them in the different blocks. Accession numbers are indicated for each sequence depending on the database utilized to retrieve the EST or protein sequence. For ESTs (NCBI nr database), BLAST (tblastn) was performed using a protein query. Only the sequences corresponding to complete predicted proteins were used. An example of each of the nomenclature of the databases is: TC (TIGR database: gi (NCBI databse: ES frame +2 (NCBI: databse tr Q8RW12 (EMBL database: Q07187 EM1_ARATH (Uniprot database: Bailey T L, Williams N, Misleh C, Li W W (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucl Acids Res 34: W369-W373.

2 Table S1. Group 1 proteins (D-19, PF00477) Accession number Species Motif Number of mer repetitions Bryophytes CN frame +2 Tortula ruralis AW frame+3 Physcomitrella patens Pteridophytes CV frame +2 Ceratopteris richardii Q40860 Q40860_PICGL Picea glauca DN frame -3 Pinus taeda BU frame +1 Prunus dulcis BW GI Lycopersicon esculentum CA Theobroma cacao Q39095_ARATH Arabidopsis thaliana EM6 P09443 LE19_GOSHI Gossypium hirsutum D-19 P93165_SOYBN Glycine max Q41685_PHAAU Vigna radiata P93510_ROBPS Robinia pseudoacacia Q850G8_ARAHY Arachis hypogaea CX frame+1 Citrus sinensis CB GI Vitis vinifera CA GI Medicago truncatula BU frame+1 Populus tremula P17639 EMB1_DAUCA Daucus carota EMB 1 DV frame +2 Euphorbia esula 2 (2X) DV frame +3 Coffea canephora 2 (2X) CX Gossypium hirsutum 2 (2X) BU Glycine max 2 (2X) Q41684_PHAAU Vigna radiata 2 (2X) P93509_ROBPS Robinia pseudoacacia 2 (2X) Q7XBA7_QUERO Quercus robur 2 (2X) BQ Lactuca sativa 2 (4X) Q07187 EM1_ARATH Arabidopsis thaliana EM1 2 (4X) CV frame +1 Solanum tuberosum 2 (2X) O65725_BRANA Brassica napus P11573 SEEP_RAPSA Raphanus sativus P8B6 P46514 LE10_HELAN Helianthus annuus Q05190 LE19A_HORVU Hordeum vulgare B-19.1 Q9M4N9_SECCE Secale cereale P46517 EMB5_MAIZE Zea mays EMB564 P46520 EMP1_ORYSA Oryza sativa BG Sorghum bicolor Q6L5L8_BROIN Bromus inermis P04568 Triticum aestivum Q41804_MAIZE Zea mays 2 (2X) BG frame+1 Sorghum bicolor EM 1 2 (3X) Q6L5L7_BROIN Bromus inermis 2 (4X) Q05191 LE194_HORVU Hordeum vulgare B (4X)

3 Table S2. Group 2 proteins (D-11, PF00257) K-subgroup Accession number Species K Domains gi Picea abies K2 gi Pinus sylvestris K2 gi Pseudotsuga menziesii K2 tr Q9LUX4 Pyrus serotina K gi Retama raetam K gi Taraxacum officinale K gi Nicotiana tabacum K2 tr Q43668 Trollius ledebouri K2 gi Vaccinium corymbosum K2 gi Populus euramericana K3 gi Quercus robur K3 gi Vaccinium corymbosum K3 gi Quercus robur K4 gi Pistacia vera K5 gi Vaccinium corymbosum K5 gi Arabidopsis thaliana At3g50970 K6 gi Spinacia oleracea K10 gi Oryza sativa K2 tr O64939 Argopyrum elongatum K6 gi Triticum aestivum K6 gi Triticum aestivum K7 gi Hordeum vulgare K9

4 YSK- subgroup Accession number Species Y S K Domains gi Glycine max YSK sp P21298 Raphanus sativus YSK gi Boea crassifolia YSK2 gi Codonopsis lanceolata YSK2 gi Craterostigma plantagineum YSK2 gi Craterostigma plantagineum YSK2 gi Daucus carota YSK2 gi Daucus carota YSK2 gi Fagus sylvatica YSK2 gi Hippophae rhamnoides YSK2 gi Lycopersicum esculentum YSK2 gi Quercus robur YSK2 gi Vitis riparia YSK2 gi Vitis vinifera YSK2 gi Gossypium hirsutum Y2SK gi Arabidopsis thaliana At5g66400 Y2SK2 gi Gossypium hirsutum Y2SK2 gi Nicotiana tabacum Y2SK2 gi Prunus dulcis Y2SK2 gi Solanum commersonii Y2SK2 gi Brassica juncea Y3SK2 gi Brassica napus Y3SK2 gi Helianthus debilis Y3SK2 gi Helianthus petiolaris Y3SK2 gi Tithonia rotundifolia Y3SK2 gi Helianthus annus Y4SK2 gi Cornus sericea Y24SK gi Cornus sericea Y26SK gi Cornus sericea Y13SK gi Oryza sativa YSK gi Xerophyta viscosa YSK gi Elaeis guineensis YSK2 gi Hordeum vulgare YSK2 gi Hordeum vulgare YSK2 gi Hordeum vulgare YSK2 gi Hordeum vulgare YSK2 gi Hordeum vulgare YSK2 gi Hordeum vulgare YSK2 gi Hordeum vulgare YSK2 gi Lophopyrum elongatum YSK2 gi Oryza sativa YSK2 gi Oryza sativa YSK2 gi Oryza sativa YSK2 gi Pennisetum glaucum YSK2 gi Triticum aestivum YSK2 gi Zea mays YSK2 gi Hordeum vulgare YSK3 gi Hordeum vulgare Y2SK2 gi Oryza sativa Y2SK2 gi Hordeum vulgare Y2SK3

5 SK-subgroup Accession number Species S K Domains gi Picea abies SK gi Pinus taeda SK gi Ginkgo biloba SK2 gi Pinus sylvestris SK2 gi Pinus taeda SK3 gi Picea glauca SK4 gi Pinus sylvestris SK4 gi Picea glauca SK4 gi Pinus sylvestris SK4 gi Solanum commersonii SK gi Arabidopsis thaliana At1g76180 SK2 gi Aster tripolium SK2 gi Brassica napus SK2 gi Brassica olearacea SK2 gi Plantago major SK2 gi Lavatera thuringiaca SK2 gi Nicotiana tabacum SK2 tr Q41111 Phaseolus vulgaris SK2 gi Populus euramericana SK2 gi Prunus persica SK2 gi Salvia miltiorrhiza SK2 gi Salvia miltiorrhiza SK2 gi Arabidopsis thaliana At1g20440 SK3 gi Arabidopsis thaliana At1g20450 SK3 gi Boea crassifolia SK3 gi Capsella bursa-pastoris SK3 gi Capsicum annuum SK3 gi Daucus carota SK3 gi Lupinus albus SK3 gi Solanum sogarandinum SK3 gi Betula pubescens SKn tr Q40186 Lemna gibba SK gi Zea mays SK gi Hyacinthus orientalis SK2 gi Oryza sativa SK2 gi Sorghum bicolor SK2 gi Hordeum vulgare SK3 gi Oryza sativa SK3 gi Triticum aestivum SK3

6 KS-subgroup Accession number Species K S Domains tr Q6PNN7 Ammopiptanthus mongolicus KS tr Q850G3 Arachis hypogaea KS tr Q8W267 Carica papaya KS gi Medicago sativa KS gi Medicago sativa KS gi Poncirus trifoliata KS tr Q8RW12 Ricinus communis KS gi Solanum sogarandinum KS gi Vaccinium corymbosum KS gi Citrus sinensis K2S gi Citrus x paradisi K2S AB Citrus unshiu K2S gi Citrus unshiu K3S gi Poncirus trifoliata K3S gi Hordeum vulgare KS YK-subgroup Accession number Species Y K Domains Bryophytes gi Physcomitrella patens Y11K gi Lactuca sativa YK gi Prunus dulcis YK4 gi Prunus persica YK8 gi Betula pubescens Y2K gi Cicer pinnatifidum Y2K gi Glycine max Y2K gi Glycine max Y2K gi Vigna unguiculata Y2K gi Pisum sativum Y2K2 gi Pisum sativum Y2K2 gi Pisum sativum Y2K2 gi Medicago sativa Y2K4

7 Table S3. Group 3 proteins (D-7/D-29, PF02987) Subgroup 3A (D-7) Accession number Species Motifs Number of mer repetitions Q40929_PSEMZ Pseudotsuga menziesii (4X) gb DN frame +3 Pinus taeda (2X), 5 (2X) gb DR frame +1 Picea glauca 1 2 Bryophytes gb CN Tor8981 frame +1 Tortula ruralis 1 5 (3X) dbj BJ frame -2 Physcomitrella patens 4 1 Pteridophytes gb CV frame +1 Ceratopteris richardii 2 3(2X), 5 (3X) P13939 LEAD7_GOSHI Gossypium hirsutum (5X) Q5G1J3_9BRAS Isatus tinctoria (2X), 3 (7X), 4 (2X) Q9LW12_ARATH Arabidopsis thaliana (2X), 3 (7X), 4 (2X) gb CX frame +3 Citrus sinensis (3X) Q9XET0_SOYBN Glycine max (4X) gb CA frame +1 Phaseolus coccineus (5X) gb BU frame +1 Populus tremula (2X) emb AJ frame +1 Antirrhinum majus (2X), 5 (2X) gb BU frame +2 Prunus dulcis (1X), 5 (1X) gb DV frame +2 Coffea canephora (3X) O49816 LEA1_CICAR Cicer arietinum (3X), 5 (2X) gb EE frame +2 Arachis hypogaea (4X) gb DV frame +1 Nicotiana tabacum (3X) 442 LEAD3_DAUCA Daucus carota (2X), 5 (2X) dbj BW frame +2 Lycopersicon esculentum (4X) gb CA frame +3 Saccharum officinarum (7X) Q42376 LEA3_MAIZE Zea mays (8X) gb DV frame +3 Agrostis capillaris (2X), 5 (2X) Q94JF2_ORYSA Oryza sativa (3X), 5 (4X) P14928 LEA1_HORVU Hordeum vulgare (2X), 5 (6X) Q8GV49_WHEAT Triticum aestivum (2X), 5 (8X) gb DT frame +2 Festuca arundinacea (2X), 3 (2X), 5 (4X) Q6L5M0_BROIN Bromus inermis (2X), 5 (3X)

8 Subgroup 3B (D-29) Accession number Species Motifs Number of mer repetitions Liverworts Q41154_9MARC Riccia fluitans 2 1 (4X) P13940 LEA29_GOSHI Gossypium hirsutum (3X) gb DY frame +3 Prunus persica (2X) gb CX frame +3 Citrus sinensis (2X) gb CV frame +2 Juglans regia (2X), 5 (2X) Q06431_BETVE Betula verrucosa 1 (13X), 4 (5X) gb EG frame +2 Ricinus communis 1 (6X), 4 (4X) gb EG frame +2 Arachis hypogaea (2X), 3 (9X), 5 (2X) Q2N1E0_PHAVU Phaseolus vulgaris (3X), 3 (2X), 4 (3X) gb EV frame +3 Medicago truncatula (8X) Q41060_PEA Pisum sativum (2X) Q9ZTY1_SOYBN Glycine max 1 (5X), 4 (3X) Q9SPJ6_SOYBN Glycine max 2 3 (3X) Q39871_SOYBN Glycine max 1 (8X), 4 (7X) Q39873_SOYBN Glycine max (2X), 3 (22X) gb EB frame +1 Nicotiana tabacum 2 1 (4X), 4 (7X) gb EL frame +3 Helianthus tuberosus (8X), 5 (2X) gb EC frame +3 Vitis vinifera 2 1 (6X), 4 (5X) gb DW frame +3 Lactuca serriola (4X), 5 (2X) Q9ZPQ7_ARATH Arabidopsis thaliana 5 2 Q6NKU0_ARATH Arabidopsis thaliana 2 2 (12X) Q6NQH7_ARATH Arabidopsis thaliana 2 1 (3X) Q84W82_ARATH Arabidopsis thaliana 5 5 (5X) Q96246_ARATH Arabidopsis thaliana 1 (9X), 4 (9X) Q9LF88_ARATH Arabidopsis thaliana 1 (11X), 4 (10X) Q9ZPW6_ARATH Arabidopsis thaliana (24X) P13934 LEA76_BRANA Brassica napus P20075 LEAD8_DAUCA Daucus carota 1 (13X), 4 (12X) gb DV Zea mays 1 (3X), 4 (6X) Q03968 LEA3_WHEAT Triticum aestivum Q43478_HORVU Hordeum vulgare gb BE frame +3 Hordeum vulgare 5 2 Q6KA29_ORYSA Oryza sativa (4X) Q8S7U3_ORYSA Oryza sativa (7X) Q7XPL4_ORYSA Oryza sativa 1(2X) Q1JRJ4_SPOST Sporobolus stapfianus (3X)

9 Table S4. Group 4 proteins (D-113, PF03760) Subgroup 4A Accession number Species Motif DR frame +3 Picea glauca DN frame +2 Pinus taeda DT frame +2 Pinus taeda Q40928 Q40928_PSEMZ Pseudotsuga menziesii Q00747 LE25_LYCES Lycopersicon esculentum AJ frame +3 Antirrhinum majus BU frame+2 Sesamum indicum Q3YMR0 Q3YMR0_CRAPL Craterostigma plantagineum ES frame +2 Arachis hypogaea CD Frame +2 Pisum sativum BM Frame +2 Thellungiella halophila gb CA frame+3 Capsicum annuum P46515 LEA11_HELAN Helianthus annus CD frame -1 Zea mays CF frame +2 Sorghum bicolor BQ frame +2 Hordeum vulgare Q5Z771 Q5Z771_ORYSA Oryza sativa Q8H683 Q8H683_ORYSA Oryza sativa CV frame +3 Triticum aestivum DT frame +2 Festuca arundinacea DV frame +3 Agrostis stolonifera

10 Subgroup 4B (D-113) Accession number Species Motif AU frame +3 Cryptomeria japonica Bryophytes PP R frame +1 Physcomitrella patens Q96273 Q96273_ARATH Arabidopsis thaliana At2g35300 Q39138 Q39138_ARATH Arabidopsis thaliana At1g32560 P09441 LEA13_GOSHI Gossypium hirsutum CX frame +3 Brassica napus Q9XES9 Q9XES9_SOYBN Glycine max gb BF Medicago truncatula DV frame +2 Euphorbia esula TC62712 frame +3 Vitis vinifera DV frame +3 Nicotiana tabacum CV frame +3 Petunia hybrida BJ frame -2 Ipomoea nil CX frame -1 Citrus sinensis Q96272_ARATH Arabidopsis thaliana At5g06760 Q56UQ3_BRANA Brassica napus Q1XAU0 Q1XAU0_SISIR Sisymbrium irio Q541U1_SOYBN Glycine max EC frame +3 Phaseolus vulgaris CA frame +2 Medicago truncatula Q6Z0I0 Q6Z0I0_ORYSA Oryza sativa Q7XLZ7 Q7XLZ7_ORYSA Oryza sativa CA frame +3 Saccharum officinarum

11 Table S5. Group 6 proteins (PvLEA18, PF10714) Accession number Species Motif gi TC67570 gi gi gi gi gi gi gi gi gi gi gi gi gi gi gi gi gi gi gi TC75991 gi gi TC88530 gi TC33577 gi TC gi gi gi TC TC gi TC Picea glauca Pinus taeda Pinus taeda Antirrhinum majus Arabidopsis thaliana At2g23110 Arabidopsis thaliana At2g23120 Arabidopsis thaliana At2g33690 Beta vulgaris Brassica napus Brassica napus Brassica napus Citrus sinensis Euphorbia esula Fragaria vesca Gerbera hybrida Glycine max Gossypium hirsutum Juglans regia Lactuca virosa Lycopersicon esculentum Phaseolus vulgaris Populus tremula Populus tremula Populus tremula Solanum tuberosum Thellungiella salsuginea Vitis vinifera Lycoris longituba Hordeum vulgare Oryza sativa (japonica cultivar-group) Oryza sativa (indica cultivar-group) Saccharum officinarum Triticum aestivum Triticum aestivum Triticum turgidum Zea mays

12 Table S6. Group 7 proteins (ASR, PF02496) Accession number Species Motif gi Cycas rumphii gi Ginkgo biloba gi Pinus taeda gi Pinus taeda gi Pseudotsuga menziesii var. menziesii gi Pseudotsuga menziesii var. menziesii gi Pinus taeda gi Pinus taeda gi Pseudotsuga menziesii var. menziesii gi Calystegia soldanella gi Capsicum annuum gi Coffea canephora gi Eucalyptus gunnii gi Glycine max gi Hevea brasiliensis gi Ipomoea nil gi Lycopersicon esculentum var. cerasiforme ASR1 gi Lycopersicon esculentum var. cerasiforme ASR2 gi Lycopersicon esculentum var. cerasiforme ASR3 gi Lycopersicon esculentum var. cerasiforme ASR4 gi Medicago sativa gi Mesembryanthemum crystallinum gi Musa acuminata gi Nicotiana tabacum gi Populus trichocarpa x Populus deltoides gi Prunus armeniaca gi Prunus persica gi Rosa hybrid cultivar gi Salicornia brachiata gi Solanum tuberosum gi Solanum tuberosum gi Vitis pseudoreticulata gi Vitis vinifera gi Vitis vinifera gi Lilium longiflorum gi Saccharum officinarum gi Oryza sativa (indica cultivar-group) gi Oryza sativa (indica cultivar-group) gi Oryza sativa (japonica cultivar-group) gi Oryza sativa (japonica cultivar-group) gi Oryza sativa (japonica cultivar-group) gi Oryza sativa (japonica cultivar-group) 2X gi Oryza sativa (japonica cultivar-group) gi Oryza sativa (japonica cultivar-group) gi Oryza sativa (japonica cultivar-group) gi Polygonatum sibiricum gi Triticum aestivum gi Zea mays gi Zingiber officinale

Supplementary Figure 1. Number of CC- and TIR- type NBS- LRR genes and presence of mir482/2118 on sequenced plant genomes.

Supplementary Figure 1. Number of CC- and TIR- type NBS- LRR genes and presence of mir482/2118 on sequenced plant genomes. Number of CC- NBS and CC- NBS- LRR R- genes Number of TIR- NBS and TIR- NBS- LRR R- genes 0 50 100 150 200 250 0 50 100 150 200 250 300 350 400 450 mir482 and mir2118 Cajanus cajan Glycine max Hevea brasiliensis

More information

AtTIL-P91V. AtTIL-P92V. AtTIL-P95V. AtTIL-P98V YFP-HPR

AtTIL-P91V. AtTIL-P92V. AtTIL-P95V. AtTIL-P98V YFP-HPR Online Resource 1. Primers used to generate constructs AtTIL-P91V, AtTIL-P92V, AtTIL-P95V and AtTIL-P98V and YFP(HPR) using overlapping PCR. pentr/d- TOPO-AtTIL was used as template to generate the constructs

More information

Supplementary Figure 3

Supplementary Figure 3 Supplementary Figure 3 7.0 Col Kas-1 Line FTH1A 8.4 F3PII3 8.9 F26H11 ATQ1 T9I22 PLS8 F26B6-B 9.6 F27L4 9.81 F27D4 9.92 9.96 10.12 10.14 10.2 11.1 0.5 Mb T1D16 Col % RGR 83.3 101 227 93.5 75.9 132 90 375

More information

Bioinformatics tools to analyze complex genomes. Yves Van de Peer Ghent University/VIB

Bioinformatics tools to analyze complex genomes. Yves Van de Peer Ghent University/VIB Bioinformatics tools to analyze complex genomes Yves Van de Peer Ghent University/VIB Detecting colinearity and large-scale gene duplications A 1 2 3 4 5 6 7 8 9 10 11 Speciation/Duplicatio n S1 S2 1

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION doi:10.1038/nature13082 Supplementary Table 1. Examination of nectar production in wild-type and atsweet9 flowers. No. of flowers with detectable nectar out of the total observed

More information

Supplemental Figure 1. Comparison of Tiller Bud Formation between the Wild Type and d27. (A) and (B) Longitudinal sections of shoot apex in wild-type

Supplemental Figure 1. Comparison of Tiller Bud Formation between the Wild Type and d27. (A) and (B) Longitudinal sections of shoot apex in wild-type A B 2 3 3 2 1 1 Supplemental Figure 1. Comparison of Tiller Bud Formation between the Wild Type and d27. (A) and (B) Longitudinal sections of shoot apex in wild-type (A) and d27 (B) seedlings at the four

More information

Cryopreservation of syn seeds

Cryopreservation of syn seeds COST Action FA1104 Sustainable production of high-quality cherries for the European market Long Term Preservation of Woody Species by Cryo Techniques, March 2015, Firenze Cryopreservation of syn seeds

More information

Jill M Duarte 1, P Kerr Wall 1,5, Patrick P Edger 2, Lena L Landherr 1, Hong Ma 1,4, J Chris Pires 2, Jim Leebens-Mack 3, Claude W depamphilis 1*

Jill M Duarte 1, P Kerr Wall 1,5, Patrick P Edger 2, Lena L Landherr 1, Hong Ma 1,4, J Chris Pires 2, Jim Leebens-Mack 3, Claude W depamphilis 1* RESEARCH ARTICLE Open Access Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels Jill M Duarte 1,

More information

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags Lingfei Shangguan 1, Jian Han 1, Emrul Kayesh 1, Xin Sun 1, Changqing Zhang 2, Tariq Pervaiz 1, Xicheng Wen

More information

Supplementary Material

Supplementary Material Supplementary Material Supplementary Table S1. Genomes available in build 47 Supplementary Table S2. Counts of putative contiguous gene split models in 39 plant reference genomes in build 47 Supplementary

More information

Structure and function of group 1 late embryogenesis abundant proteins

Structure and function of group 1 late embryogenesis abundant proteins 20 3 2008 6 Chinese Bulletin of Life Sciences Vol. 20, No. 3 Jun., 2008 1004-0374(2008)03-0489-06 1 518060 (late embryogenesis abundant proteins LEA) LEA 6 1 LEA LEA1 20 LEA1 LEA1 LEA1 20 S565.1 Q946.1

More information

Supplementary Information for: The genome of the extremophile crucifer Thellungiella parvula

Supplementary Information for: The genome of the extremophile crucifer Thellungiella parvula Supplementary Information for: The genome of the extremophile crucifer Thellungiella parvula Maheshi Dassanayake 1,9, Dong-Ha Oh 1,9, Jeffrey S. Haas 1,2, Alvaro Hernandez 3, Hyewon Hong 1,4, Shahjahan

More information

Cao, J, K Schneeberger, S Ossowski, et al Whole genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet 43:

Cao, J, K Schneeberger, S Ossowski, et al Whole genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet 43: Figure S1. Syntenic map of SAE1B duplication. We have used the nucleotide sequences of Arabidopsis thaliana Col-0 gene tandem duplicates AT5G50580 and AT5G506800 as queries in independent BLASTN searches

More information

Scientific Names of Common Plants/Trees Scientific Names - Fruits and Vegetables

Scientific Names of Common Plants/Trees Scientific Names - Fruits and Vegetables OUR OWN HIGH SCHOOL, Al WARQA A, DUBAI BIOLOGY Grade 11 Unit 1 Diversity in the living world Name : Chapter The Living World Class and Section: Topic Binomial Nomenclature Date: s of Common Plants/Trees

More information

Isohydric and anisohydric characterisation of vegetable crops

Isohydric and anisohydric characterisation of vegetable crops Isohydric and anisohydric characterisation of vegetable crops The classification of vegetables by their physiological responses to water stress Compiled by: Acknowledgements: Sarah Limpus Horticulturist

More information

Supplemental data. Vos et al. (2008). The plant TPX2 protein regulates pro-spindle assembly before nuclear envelope breakdown.

Supplemental data. Vos et al. (2008). The plant TPX2 protein regulates pro-spindle assembly before nuclear envelope breakdown. Supplemental data. Vos et al. (2008). The plant TPX2 protein regulates pro-spindle assembly before nuclear envelope breakdown. SUPPLEMENTAL FIGURE 1 ONLINE Xenopus laevis! Xenopus tropicalis! Danio rerio!

More information

Regulatory Change in YABBY-like Transcription Factor Led to Evolution of Extreme Fruit Size during Tomato Domestication

Regulatory Change in YABBY-like Transcription Factor Led to Evolution of Extreme Fruit Size during Tomato Domestication SUPPORTING ONLINE MATERIALS Regulatory Change in YABBY-like Transcription Factor Led to Evolution of Extreme Fruit Size during Tomato Domestication Bin Cong, Luz Barrero, & Steven Tanksley 1 SUPPORTING

More information

Supplemental Table 1. Primers used for cloning and PCR amplification in this study

Supplemental Table 1. Primers used for cloning and PCR amplification in this study Supplemental Table 1. Primers used for cloning and PCR amplification in this study Target Gene Primer sequence NATA1 (At2g393) forward GGG GAC AAG TTT GTA CAA AAA AGC AGG CTT CAT GGC GCC TCC AAC CGC AGC

More information

Miloš Duchoslav and Lukáš Fischer *

Miloš Duchoslav and Lukáš Fischer * Duchoslav and Fischer BMC Plant Biology (2015) 15:133 DOI 10.1186/s12870-015-0523-4 RESEARCH ARTICLE Open Access Parallel subfunctionalisation of PsbO protein isoforms in angiosperms revealed by phylogenetic

More information

South Green Bioinformatics activities at CIRAD

South Green Bioinformatics activities at CIRAD South Green Bioinformatics activities at CIRAD Data Integration Team of the research unit DAP Manuel Ruiz, CIP, Lima, 23rd january The Joint Research Unit DAP (Développement et Amélioration des Plantes

More information

An Overview on Stress Signals in Relation to Flowering in Litchi chinensis and Dimocarpus longan

An Overview on Stress Signals in Relation to Flowering in Litchi chinensis and Dimocarpus longan An Overview on Stress Signals in Relation to Flowering in Litchi chinensis and Dimocarpus longan Biyan Zhou and Houbin Chen College of Horticulture South China Agricultural University Guangzhou, China

More information

... -: Crop physiology. - : Crop technology. -: Crop improvement. -: Crop production.

... -: Crop physiology. - : Crop technology. -: Crop improvement. -: Crop production. .:.:.: /.: - Thomas Malthus...: : : : : :...: : : : : : (Malthus ) beta."a" "carotene Bt Cotton No Tillage ( ) Minimum Tillage ) ( - : :) : :) : :) : :.( 2012 2.1 :) : : : Field crops science Agro Agronomy

More information

Sclerotinia Rot of Ocimum sanctum and the Host Range of its Pathogen

Sclerotinia Rot of Ocimum sanctum and the Host Range of its Pathogen International Journal of Agriculture, Environment & Biotechnology Citation: IJAEB: 7(3): 651-656 September 2014 DOI Number: 10.5958/2230-732X.2014.01372.2 30 2014 New Delhi Publishers. All rights reserved

More information

QENDRA E RESURSEVE GJENETIKE

QENDRA E RESURSEVE GJENETIKE QENDRA E RESURSEVE GJENETIKE BANKA GJENETIKE ANALIZA VJETORE Dokumentimi i Resurseve Gjenetike për 6 mujorin e I rw 2011 10/02/2011 Dokumentimi i RGB 1 10/02/2011 Dokumentimi i RGB (B. Gixhari) 2 Organizimi

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:1.138/nature11394 Supplementary Note Our study is based on two different tracriptome indices. Both combine tracriptional information with an important evolutionary parameter. For the tracriptome age

More information

Slovene Plant Gene Bank (SPGB) and Genetic Resources Programme

Slovene Plant Gene Bank (SPGB) and Genetic Resources Programme Slovene Plant Gene Bank (SPGB) and Genetic Resources Programme Second Meeting of the ECPGR Working Group on Leafy Vegetables 8 9 October, Ljubljana, Slovenia Vladimir MEGLIČ, Jelka ŠUŠTAR VOZLIČ Slovene

More information

Browsing Genomic Information with Ensembl Plants

Browsing Genomic Information with Ensembl Plants Browsing Genomic Information with Ensembl Plants Etienne de Villiers, PhD (Adapted from slides by Bert Overduin EMBL-EBI) Outline of workshop Brief introduction to Ensembl Plants History Content Tutorial

More information

Survey of glycine-rich proteins (GRPs) in the Eucalyptus expressed sequence tag database (ForEST)

Survey of glycine-rich proteins (GRPs) in the Eucalyptus expressed sequence tag database (ForEST) Research Article Genetics and Molecular Biology, 28, 3 (suppl), 608-624 (2005) Copyright by the Brazilian Society of Genetics. Printed in Brazil www.sbg.org.br Survey of s (GRPs) in the Eucalyptus expressed

More information

A computational analysis of Salt Overly Sensitive 1 homologs in halophytes and glycophytes

A computational analysis of Salt Overly Sensitive 1 homologs in halophytes and glycophytes A computational analysis of Salt Overly Sensitive 1 homologs in halophytes and glycophytes Cherin E. Kim 1 and Ray A. Bressan 2 1 West Lafayette Jr./Sr. High School, West Lafayette, IN, USA 2 Department

More information

Supplemental Figure 1. Comparisons of GC3 distribution computed with raw EST data, bi-beta fits and complete genome sequences for 6 species.

Supplemental Figure 1. Comparisons of GC3 distribution computed with raw EST data, bi-beta fits and complete genome sequences for 6 species. Supplemental Figure 1. Comparisons of GC3 distribution computed with raw EST data, bi-beta fits and complete genome sequences for 6 species. Filled distributions: GC3 computed with raw EST data. Dashed

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:1.138/nature111 cytosol Model: PILS function in cellular auxin homeostasis ER nucleus IAA degradation? sequestration? conjugation? storage? signalling? PILS IAA ER cytosol Supplemental Figure 1 Model

More information

CHAPTER 35:02 - PLANT PROTECTION: SUBSIDIARY LEGISLATION INDEX TO SUBSIDIARY LEGISLATION

CHAPTER 35:02 - PLANT PROTECTION: SUBSIDIARY LEGISLATION INDEX TO SUBSIDIARY LEGISLATION CHAPTER 35:02 - PLANT PROTECTION: SUBSIDIARY LEGISLATION INDEX TO SUBSIDIARY LEGISLATION Plant Protection Regulations PLANT PROTECTION REGULATIONS (section 29) (17th July, 2009) ARRANGEMENT OF REGULATIONS

More information

Genome-wide discovery of G-quadruplex forming sequences and their functional

Genome-wide discovery of G-quadruplex forming sequences and their functional *Correspondence and requests for materials should be addressed to R.G. (rohini@nipgr.ac.in) Genome-wide discovery of G-quadruplex forming sequences and their functional relevance in plants Rohini Garg*,

More information

Lecture 2. The Blast2GO annotation framework

Lecture 2. The Blast2GO annotation framework Lecture 2 The Blast2GO annotation framework Annotation steps Modulation of annotation intensity Export/Import Functions Sequence Selection Additional Tools Functional assignment Annotation Transference

More information

Supplemental Data. Chen and Thelen (2010). Plant Cell /tpc

Supplemental Data. Chen and Thelen (2010). Plant Cell /tpc Supplemental Data. Chen and Thelen (2010). Plant Cell 10.1105/tpc.109.071837 1 C Total 5 kg 20 kg 100 kg Transmission Image 100 kg soluble pdtpi-gfp Plastid (PDH-alpha) Mito (PDH-alpha) GFP Image vector

More information

Genome-wide Identification of Lineage Specific Genes in Arabidopsis, Oryza and Populus

Genome-wide Identification of Lineage Specific Genes in Arabidopsis, Oryza and Populus Genome-wide Identification of Lineage Specific Genes in Arabidopsis, Oryza and Populus Xiaohan Yang Sara Jawdy Timothy Tschaplinski Gerald Tuskan Environmental Sciences Division Oak Ridge National Laboratory

More information

Changing Flora of the Stockton College Campus Jamie Cromartie PINELANDS RESEARCH SERIES 14 August 2012

Changing Flora of the Stockton College Campus Jamie Cromartie PINELANDS RESEARCH SERIES 14 August 2012 Changing Flora of the Stockton College Campus 1970-2012 Jamie Cromartie PINELANDS RESEARCH SERIES 14 August 2012 Richard Stockton College Exotic Species Sites 1971 Map Genus species common name

More information

Oikos. Appendix 1. Comparing mating system information from BiolFlor and from independent quantitative surveys OIK-02328

Oikos. Appendix 1. Comparing mating system information from BiolFlor and from independent quantitative surveys OIK-02328 Oikos OIK-02328 Munoz, F., Violle, C. and Cheptou, P.-O. 2015. CSR ecological strategies and plant mating systems: outcrossing increases with competitiveness but stresstolerance is related to mixed mating.

More information

Potato Genome Analysis

Potato Genome Analysis Potato Genome Analysis Xin Liu Deputy director BGI research 2016.1.21 WCRTC 2016 @ Nanning Reference genome construction???????????????????????????????????????? Sequencing HELL RIEND WELCOME BGI ZHEN LLOFRI

More information

Powdery scab management in South Africa

Powdery scab management in South Africa Powdery scab management in South Africa Prof Jacquie van der Waals, University of Pretoria Spongospora subterranea f. sp. subterranea (Sss) is an increasingly important pathogen of potatoes globally. Infection

More information

Darwin Review Biochemistry and physiological roles of enzymes that cut and paste plant cell-wall polysaccharides

Darwin Review Biochemistry and physiological roles of enzymes that cut and paste plant cell-wall polysaccharides Journal of Experimental Botany, Vol. 64, No. 12, pp. 3519 3550, 2013 doi:10.1093/jxb/ert201 Darwin Review Biochemistry and physiological roles of enzymes that cut and paste plant cell-wall polysaccharides

More information

Parts Manual. EPIC II Critical Care Bed REF 2031

Parts Manual. EPIC II Critical Care Bed REF 2031 EPIC II Critical Care Bed REF 2031 Parts Manual For parts or technical assistance call: USA: 1-800-327-0770 2013/05 B.0 2031-109-006 REV B www.stryker.com Table of Contents English Product Labels... 4

More information

Genome-wide bioinformatics analysis of DELLA-family proteins from plants

Genome-wide bioinformatics analysis of DELLA-family proteins from plants POJ 6(3):201-207 (2013) ISSN:1836-3644 Genome-wide bioinformatics analysis of DELLA-family proteins from plants Jinhui Chen 1,#, Tielong Cheng 2,#, Pengkai Wang 1, Lin Tian 2, Guangping Wang 1, Yuming

More information

Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.)

Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.) Article Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.) Surendra Neupane, Ethan J. Andersen, Achal Neupane and Madhav P. Nepal * Department of Biology and

More information

SUPPLEMENTARY MATERIAL SUPPLEMENTARY TABLES

SUPPLEMENTARY MATERIAL SUPPLEMENTARY TABLES SUPPLEMENTARY MATERIAL SUPPLEMENTARY TABLES Supplementary Table 1. Genomes available in Gramene build 38 Supplementary Table 2. Ontology associations in Gramene build 38 Supplementary Table 3. Synteny

More information

Development of primer pairs from diverse chloroplast genomes for use in plant phylogenetic research

Development of primer pairs from diverse chloroplast genomes for use in plant phylogenetic research Development of primer pairs from diverse chloroplast genomes for use in plant phylogenetic research Y.C. Yang 1, 2, T.L. Kung 1, 3, C.Y. Hu 4 and S.F. Lin 1 1 Department of Agronomy, National Taiwan University,

More information

English text only TRADE AND AGRICULTURE DIRECTORATE COMMITTEE FOR AGRICULTURE

English text only TRADE AND AGRICULTURE DIRECTORATE COMMITTEE FOR AGRICULTURE For Official Use TAD/CA/S/RD(2008)12/REV2 TAD/CA/S/RD(2008)12/REV2 For Official Use Organisation de Coopération et de Développement Économiques Organisation for Economic Co-operation and Development 28-Apr-2009

More information

Biodiversity Laboratory. Measuring Impacts on Soil Biodiversity in Agroecosystems

Biodiversity Laboratory. Measuring Impacts on Soil Biodiversity in Agroecosystems Biodiversity Laboratory Measuring Impacts on Soil Biodiversity in Agroecosystems Objectives: 1) To compare processes occurring in natural ecosystems with those of agroecosystems; 2) To become familiar

More information

Taxonomic Identification of Traces using Non-human DNA

Taxonomic Identification of Traces using Non-human DNA Taxonomic Identification of Traces using Non-human DNA David A. Stoney Stoney Forensic, Inc. 14101-G Willard Road, Chantilly, VA 20151 1 Taxonomic Identification of Traces using Non-human DNA Differences

More information

Supplement of Ice nucleators, bacterial cells and Pseudomonas syringae in precipitation at Jungfraujoch

Supplement of Ice nucleators, bacterial cells and Pseudomonas syringae in precipitation at Jungfraujoch Supplement of Biogeosciences, 14, 1189 1196, 2017 http://www.biogeosciences.net/14/1189/2017/ doi:10.5194/bg-14-1189-2017-supplement Author(s) 2017. CC Attribution 3.0 License. Supplement of Ice nucleators,

More information

Supplemental Data. Yang et al. (2012). Plant Cell /tpc

Supplemental Data. Yang et al. (2012). Plant Cell /tpc Supplemental Figure 1. Mature flowers of P. heterotricha. (A) An inflorescence of P. heterotricha showing the front view of a zygomorphic flower characterized by two small dorsal petals and only two fertile

More information

LR characterization for identity assessment

LR characterization for identity assessment Thursday 8 Sept 11,00 RT1. LR characterization for identity assessment Renzo Torricelli Department of Applied Biology, University of Perugia, (Italy) Conservation strategies for European crop wild relative

More information

The Opportunity for Escape of Engineered Genes from Transgenic Crops

The Opportunity for Escape of Engineered Genes from Transgenic Crops FEATURE The Opportunity for Escape of Engineered Genes from Transgenic Crops J.F. Hancock, R. Grumet, and S.C. Hokanson Department of Horticulture, Michigan State University, East Lansing, MI 48824 Much

More information

Genomics and Bioinformatics Resources for Crop Improvement

Genomics and Bioinformatics Resources for Crop Improvement Genomics and Bioinformatics Resources for Crop Improvement Keiichi Mochida and Kazuo Shinozaki RIKEN Plant Science Center, Yokohama, 230-0045 Japan Corresponding author: E-mail, sinozaki@rtc.riken.jp ;

More information

Host range of Phytophthora parsiana: a new high temperature pathogen of woody plants

Host range of Phytophthora parsiana: a new high temperature pathogen of woody plants Phytopathol. Mediterr. (2011) 50, 159 165 Host range of Phytophthora parsiana: a new high temperature pathogen of woody plants Somieh HAJEBRAHIMI and Zia BANIHASHEMI Department of Plant Protection, College

More information

Cover Crop Chart. RELATIVE WATER USE = Low. = Medium. = High

Cover Crop Chart. RELATIVE WATER USE = Low. = Medium. = High Cover Crop Chart A GROWTH CYCLE = Annual RELATIVE WATER USE = Low PLANT ARCHITECTURE = Upright txtcvr B = Biennial = Medium = Upright-Spreading P = Perennial = High = Prostrate --------------------------------------------Cool

More information

European Phenology. Dutch phenological Network Natuurkalender. Network

European Phenology. Dutch phenological Network Natuurkalender. Network European Phenology Network Dutch phenological Network Natuurkalender Arnold J.H. van Vliet Environmental Systems Analysis Group Wageningen University Content European Phenology Network Issues: Observation

More information

Allelopathic effects of wheat and barley on emergence and seedling growth of some weed species

Allelopathic effects of wheat and barley on emergence and seedling growth of some weed species International Journal of Biosciences IJB ISSN: 2220-6655 (Print) 2222-5234 (Online) http://www.innspub.net Vol. 3, No. 1, p. 128-134, 2013 RESEARCH PAPER OPEN ACCESS Allelopathic effects of wheat and barley

More information

Heterotrimeric G proteins in Picea abies and their regulation in response to Heterobasidion annosum s.l. infection

Heterotrimeric G proteins in Picea abies and their regulation in response to Heterobasidion annosum s.l. infection de Vries et al. BMC Plant Biology (2015) 15:287 DOI 10.1186/s12870-015-0676-1 RESEARCH ARTICLE Open Access Heterotrimeric G proteins in Picea abies and their regulation in response to Heterobasidion annosum

More information

Study of Allelopathic Interactions of weeds on of Wheat (Triticum aestivum L.) and Moong (Vigna radiata) using Equal-Compartment-Agar Method (ECAM)

Study of Allelopathic Interactions of weeds on of Wheat (Triticum aestivum L.) and Moong (Vigna radiata) using Equal-Compartment-Agar Method (ECAM) International Journal of Applied Agricultural Research ISSN 0973-2683 Volume 12, Number 2 (2017) pp. 247-254 Research India Publications http://www.ripublication.com Study of Allelopathic Interactions

More information

Stage 1: Karyotype Stage 2: Gene content & order Step 3

Stage 1: Karyotype Stage 2: Gene content & order Step 3 Supplementary Figure Method used for ancestral genome reconstruction. MRCA (Most Recent Common Ancestor), AMK (Ancestral Monocot Karyotype), AEK (Ancestral Eudicot Karyotype), AGK (Ancestral Grass Karyotype)

More information

Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants

Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants Mohanta et al. BMC Genomics (2015) 16:58 DOI 10.1186/s12864-015-1244-7 RESEARCH ARTICLE Open Access Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel

More information

The name of a species consisted of a generic name (noun) followed by 1 or more Latin modifiers.

The name of a species consisted of a generic name (noun) followed by 1 or more Latin modifiers. Chapter 17 Naming and Organizing Plants and Microbes Botanical Nomenclature Nomenclature- the giving and using of names Historically, there have been two independent kinds of botanical nomenclature. 1)

More information

HORTSCIENCE 47(1):

HORTSCIENCE 47(1): HORTSCIENCE 47(1):143 148. 2012. A Cytosolic Heat Shock Protein Expressed in Carrot (Daucus carota L.) Enhances Cell Viability under Oxidative and Osmotic Stress Conditions Yeh-Jin Ahn 1 and Na-Hyun Song

More information

Bioinformatics Approach For Conservation Of Fauna and Flora Through Bioprospecting

Bioinformatics Approach For Conservation Of Fauna and Flora Through Bioprospecting ISPUB.COM The Internet Journal of Genomics and Proteomics Volume 5 Number 1 Bioinformatics Approach For Conservation Of Fauna and Flora Through Bioprospecting P Chauhan, S Kushwaha Citation P Chauhan,

More information

Phylogenetic Analysis and Homology Modelling of Betaine Aldehyde Dehydrogenase - An Aroma Producing Protein in Rice (Oryza Sativa L.

Phylogenetic Analysis and Homology Modelling of Betaine Aldehyde Dehydrogenase - An Aroma Producing Protein in Rice (Oryza Sativa L. Phylogenetic Analysis and Homology Modelling of Betaine Aldehyde Dehydrogenase - An Aroma Producing Protein in Rice (Oryza Sativa L.) ABSTRACT: Puspita Hore*, Shamsun Nahar**, Mina Hasampura***, & Bhaben

More information

training workshop 2015

training workshop 2015 TransPLANT user training workshop 2015 Slides: http://tinyurl.com/transplant2015 Workshop on variation data EMBL-EBI Hinxton-UK 2nd July 2015 Ensembl Genomes Team Notes: This workshop is based on Ensembl

More information

Experience in Portugal of securing authorisation to release Trichilogaster acaciaelongifoliae (against Acacia longifolia)

Experience in Portugal of securing authorisation to release Trichilogaster acaciaelongifoliae (against Acacia longifolia) Experience in Portugal of securing authorisation to release Trichilogaster acaciaelongifoliae (against Acacia longifolia) Elizabete Marchante 1, H. Freitas 1, J. Hoffmann 3 & H. Marchante 1,2 1 Centre

More information

Transcriptome analysis for discovering candidate genes involve in embryogenesis in coconut (Cocos nucifera L.) through 454 pyrosequencing

Transcriptome analysis for discovering candidate genes involve in embryogenesis in coconut (Cocos nucifera L.) through 454 pyrosequencing J.Natn.Sci.Foundation Sri Lanka 2015 43 (4): 319-336 DOI: http://dx.doi.org/10.4038/jnsfsr.v43i4.7967 RESEARCH ARTICLE Transcriptome analysis for discovering candidate genes involve in embryogenesis in

More information

Do Native Plant Mixtures Reduce Invasions Along Roadsides in Wisconsin? Joslyn Mink MS Candidate University of Wisconsin-Madison

Do Native Plant Mixtures Reduce Invasions Along Roadsides in Wisconsin? Joslyn Mink MS Candidate University of Wisconsin-Madison Do Native Plant Mixtures Reduce Invasions Along Roadsides in Wisconsin? Joslyn Mink MS Candidate University of Wisconsin-Madison Wisconsin Department of Transportation (DOT) Invasive plants perceived to

More information

Available online at International journal of Advanced Biological and Biomedical Research. Volume 2, Issue 2, 2014:

Available online at  International journal of Advanced Biological and Biomedical Research. Volume 2, Issue 2, 2014: Available online at http://www.ijabbr.com International journal of Advanced Biological and Biomedical Research Volume 2, Issue 2, 2014: 504-509 Bioinformatics comparison of codon usage of genes encoding

More information

Journal of Medicinal Plants Studies. Biodiversity in the Medicinal Flora of District Bannu Khyber Pakhtunkhwa, Pakistan

Journal of Medicinal Plants Studies. Biodiversity in the Medicinal Flora of District Bannu Khyber Pakhtunkhwa, Pakistan Year: 2013, Volume: 1, Issue: 4 First page: (106) Last page: (111) ISSN: 2320-3862 Online Available at www.plantsjournal.com Biodiversity in the Medicinal Flora of District Bannu Khyber Pakhtunkhwa, Pakistan

More information

Tansley review. Clint J. Springer and Joy K. Ward. New Phytologist (2007) 176:

Tansley review. Clint J. Springer and Joy K. Ward. New Phytologist (2007) 176: Review Blackwell Publishing Ltd Flowering time and elevated atmospheric Author for correspondence: Clint J. Springer Tel: +1 785 8645229 Fax: +1 785 8645860 Email: clint.springer@sju.edu Clint J. Springer

More information

Order. GLO-like sequences

Order. GLO-like sequences Table S1. DEF and GLO-like sequences employed in this study. This manuscript describes the isolation and characterization of those sequences with names in bold type. DEF-like sequences Species GenBank

More information

Modulating the Expression of Transcription Factors: An Attractive Strategy for Raising Abiotic Stress Tolerant Plants

Modulating the Expression of Transcription Factors: An Attractive Strategy for Raising Abiotic Stress Tolerant Plants Plant Stress 2013 Global Science Books Modulating the Expression of Transcription Factors: An Attractive Strategy for Raising Abiotic Stress Tolerant Plants Nita Lakra 1# Kamlesh K. Nutan 1# Sneh L. Singla-Pareek

More information

THE TRANSLATION PLANES OF ORDER 49 AND THEIR AUTOMORPHISM GROUPS

THE TRANSLATION PLANES OF ORDER 49 AND THEIR AUTOMORPHISM GROUPS MATHEMATICS OF COMPUTATION Volume 67, Number 223, July 1998, Pages 1207 1224 S 0025-5718(98)00961-2 THE TRANSLATION PLANES OF ORDER 49 AND THEIR AUTOMORPHISM GROUPS C. CHARNES AND U. DEMPWOLFF Abstract.

More information

Abundance and diversity of resistance genes in the sugarcane transcriptome revealed by in silico analysis

Abundance and diversity of resistance genes in the sugarcane transcriptome revealed by in silico analysis Abundance and diversity of resistance genes in the sugarcane transcriptome revealed by in silico analysis A.C. Wanderley-Nogueira, N.M. Soares-Cavalcanti, D.A.L. Morais, L.C. Belarmino, A. Barbosa-Silva

More information

Selection Methods in Plant Breeding

Selection Methods in Plant Breeding Selection Methods in Plant Breeding Selection Methods in Plant Breeding 2nd Edition by Izak Bos University of Wageningen, The Netherlands and Peter Caligari University of Talca, Chile A C.I.P. Catalogue

More information

NATIONAL PLANT DIAGNOSTIC NETWORK VIRUS DIAGNOSTICS WORKSHOP MARCH 2016

NATIONAL PLANT DIAGNOSTIC NETWORK VIRUS DIAGNOSTICS WORKSHOP MARCH 2016 NATIONAL PLANT DIAGNOSTIC NETWORK VIRUS DIAGNOSTICS WORKSHOP MARCH 2016 DIMITRE MOLLOV, USDA-ARS, BARC, NGRL RAMON JORDAN, USDA-ARS, ARS USNA, FNPRU JOHN HAMMOND, USDA-ARS, USNA, FNPRU WHY DO WE NEED TO

More information

AUXIN CONJUGATE HYDROLYSIS DURING PLANT-MICROBE INTERACTION AND EVOLUTION

AUXIN CONJUGATE HYDROLYSIS DURING PLANT-MICROBE INTERACTION AND EVOLUTION AUXIN CONJUGATE HYDROLYSIS DURING PLANT-MICROBE INTERACTION AND EVOLUTION J. Ludwig-Müller 1, A. Schuller 1, A.F. Olajide 2, V. Bakllamaja 2, J.J. Campanella 2 ABSTRACT Plants regulate auxin balance through

More information

The analysis of Lupinus albus root proteome revealed cytoskeleton altered features due to long-term boron deficiency

The analysis of Lupinus albus root proteome revealed cytoskeleton altered features due to long-term boron deficiency J O U R N A L O F P R O T E O M I C S 7 4 ( 0 1 1 ) 1 5 1 1 6 a v a i l a b l e a t w w w. s c i e n c e d i r e c t. c o m w w w. e l s e v i e r. c o m / l o c a t e / j p r o t The analysis of Lupinus

More information

Supplemental Text: Literature search and Analyses

Supplemental Text: Literature search and Analyses A supplement to the Annual Reviews of Ecology, Evolution and Systematics article on Genotype-byenvironment interaction and plasticity: exploring genomic responses of plants to the abiotic environment by

More information

Research Article mir156- and mir171-binding Sites in the Protein-Coding Sequences of Several Plant Genes

Research Article mir156- and mir171-binding Sites in the Protein-Coding Sequences of Several Plant Genes BioMed Research International Volume, Article ID, pages http://dx.doi.org/.// Research Article mir- and mir-binding Sites in the Protein-oding Sequences of Several Plant Genes Assyl Bari, Saltanat Orazova,

More information

Role of CBF/DRFBs in ABA Signalling during Cold Stress in Plants

Role of CBF/DRFBs in ABA Signalling during Cold Stress in Plants Role of CBF/DRFBs in ABA Signalling during Cold Stress in Plants Abstract Abiotic stresses, such as oxidative stress are serious threats to agriculture and the natural status of the environment. Recently,

More information

Figure S2 The model performances using different training and independent datasets with Wilcoxon-based feature selection approach.

Figure S2 The model performances using different training and independent datasets with Wilcoxon-based feature selection approach. Figure S1 Area under a receiver operating characteristics curve (AUC) values based on different window sizes. Blue and orange color represents without and with feature of selection. p-values were also

More information

Phyllobilins the Abundant Tetrapyrrolic Catabolites of the Green. Plant Pigment Chlorophyll. Bernhard Kräutler

Phyllobilins the Abundant Tetrapyrrolic Catabolites of the Green. Plant Pigment Chlorophyll. Bernhard Kräutler Electronic Supplementary Material (ESI) for Chemical Society Reviews. This journal is The Royal Society of Chemistry 2014 Phyllobilin-TutRev-ESI-BKräutler S1 Phyllobilins the Abundant Tetrapyrrolic Catabolites

More information

Genomic identification of group A bzip transcription factors and their responses to abiotic stress in carrot

Genomic identification of group A bzip transcription factors and their responses to abiotic stress in carrot Genomic identification of group A bzip transcription factors and their responses to abiotic stress in carrot F. Que, G.L. Wang, Y. Huang, Z.S. Xu, F. Wang and A.S. Xiong State Key Laboratory of Crop Genetics

More information

Development and use of chloroplast microsatellites in Phaseolus spp. and other legumes

Development and use of chloroplast microsatellites in Phaseolus spp. and other legumes Plant Biology ISSN 1435-8603 RESEARCH PAPER in Phaseolus spp. and other legumes S. A. Angioi 1, F. Desiderio 2, D. Rau 1, E. Bitocchi 2, G. Attene 1 & R. Papa 2 1 Dipartimento di Scienze Agronomiche e

More information

Genome-wide analysis of TCP family in tobacco

Genome-wide analysis of TCP family in tobacco Genome-wide analysis of TCP family in tobacco L. Chen 1,2, Y.Q. Chen 3, A.M. Ding 1, H. Chen 1,2, F. Xia 1,2, W.F. Wang 1,2 and Y.H. Sun 1 1 Key Laboratory for Tobacco Gene Resources, Tobacco Research

More information

Table 2-1. Quick reference guide to tree and shrub characteristics

Table 2-1. Quick reference guide to tree and shrub characteristics Table 2-1. Quick reference guide to tree and shrub characteristics Shrubs Almond, Russian 3-5 3-5 3-5 SLOW M Y N Y M Y N Y Prunus tenella Buffaloberry, Silver 6-12 6-14 8-14 MED. N M Y NONE Y Y Y N Y Shepherdia

More information

THE CHARACTERISATION OF HERITAGE VEGETABLES JENNIFER PRESTON

THE CHARACTERISATION OF HERITAGE VEGETABLES JENNIFER PRESTON THE CHARACTERISATION OF HERITAGE VEGETABLES by JENNIFER PRESTON A thesis submitted to the University of Birmingham for the degree of DOCTOR OF PHILOSOPHY School of Biosciences University of Birmingham

More information

In silico characterization of putative members of the coffee (Coffea arabica) ethylene signaling pathway

In silico characterization of putative members of the coffee (Coffea arabica) ethylene signaling pathway In silico characterization of putative members of the coffee (Coffea arabica) ethylene signaling pathway A.A. Lima 1, S.A. Ságio 1, A. Chalfun-Júnior 1 and L.V. Paiva 2 1 Departamento de Biologia, Universidade

More information

Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors

Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors Gao et al. BMC Plant Biology (2018) 18:256 https://doi.org/10.1186/s12870-018-1437-8 RESEARCH ARTICLE Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary

More information

Site 16 Charnwood Park General Description

Site 16 Charnwood Park General Description Table 16- Charnwood Park Site 16 Charnwood Park General Description Charnwood Park is a large undeveloped open space, adjacent to and east of John N Allen Park. It is separated from John N Allen Park by

More information

ALLELOPATHIC EFFECTS OF RICE STRAW EXTRACT ON DIFFERENT CROPS AND WEEDS

ALLELOPATHIC EFFECTS OF RICE STRAW EXTRACT ON DIFFERENT CROPS AND WEEDS ALLELOPATHIC EFFECTS OF RICE STRAW EXTRACT ON DIFFERENT CROPS AND WEEDS Riaz Ahmad Afridi 1, 2, Muhammad Azim Khan 2, Zahid Hussain 2, Sarwat Saleem 4, Shitab Khan 1, Khilwat Afridi 5 and Muhammad Ali

More information

Hydrogen peroxide is generated systemically in plant leaves by wounding and systemin via the octadecanoid pathway

Hydrogen peroxide is generated systemically in plant leaves by wounding and systemin via the octadecanoid pathway Proc. Natl. Acad. Sci. USA Vol. 96, pp. 6553 6557, May 1999 Plant Biology Hydrogen peroxide is generated systemically in plant leaves by wounding and systemin via the octadecanoid pathway MARTHA OROZCO-CARDENAS

More information

Curriculum Vitae. development / Plant growth regulators / Tissue culture / Design and analysis of agricultural experiments

Curriculum Vitae. development / Plant growth regulators / Tissue culture / Design and analysis of agricultural experiments Curriculum Vitae Prof. Dr. Majeed Kadhim Abbas Al-Hamzawi E-mail: Majeed_edu@yahoo.com Mobile: 0780-2344057 Academic Certificate Academic Certificate University Faculty Department Graduation Year Bachelor

More information

Phylogeny of the Plant Salinity Tolerance Related HKT Genes

Phylogeny of the Plant Salinity Tolerance Related HKT Genes International Journal of Biology; Vol. 5, No. 2; 2013 ISSN 1916-9671 E-ISSN 1916-968X Published by Canadian Center of Science and Education Phylogeny of the Plant Salinity Tolerance Related HKT Genes Sameera

More information

RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.)

RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.) Suzuki et al. BMC Genomics (2016) 17:611 DOI 10.1186/s12864-016-2995-5 RESEARCH ARTICLE RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.) Kazuma Suzuki 1, Tomohiro

More information