Sheet1. Page 1. protein

Transcription

1 build 1 version 1 Ab initio model Ab initio GPIPE/6085/1.1/gnomon_prot build 1 version 1 Build GPIPE/6085/1.1/ Acyrthosiphon pisum build 2 version 1 Build GPIPE/7029/2.1/ Acyrthosiphon pisum build 2.1 Ab initio model Ab initio GPIPE/7029/2.1/gnomon_prot Acyrthosiphon pisum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Official Gene Set 1.0 Acyrthosiphon pisum Official Gene Set 1.0 GPIPE/7029/2.1/ogs_prot Acyrthosiphon pisum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Aedes aegypti build 1 version 1 ab initio model Ab initio GPIPE/7159/1.1/gnomon_prot Aedes aegypti Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Aedes aegypti RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Ailuropoda melanoleuca build 1 version 1 ab initio model Ab initio GPIPE/9646/1.1/gnomon_prot Ailuropoda melanoleuca build 1 version 1 Build GPIPE/9646/1.1/ Ailuropoda melanoleuca Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ailuropoda melanoleuca RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein All new or revised GenBank CDS translations+pdb+swissprot+pir+prf released in the last month monthaa monthaa All new or revised GenBank CDS translations+pdb+swissprot+pir+prf released in the last month month month All new or revised PATAA Sequences released in the last month month.pataa All non-redundant GenBank CDS translations+pdb+swissprot+pir+prf excluding environmental samples from WGS projects nr Amphimedon queenslandica build 1.1 Ab initio model Ab initio month.pataa nr GPIPE/400682/1.1/gnomon_prot Amphimedon queenslandica build 1.1 Build GPIPE/400682/1.1/ Amphimedon queenslandica Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Amphimedon queenslandica RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Anolis carolinensis build 1 version 1 Build GPIPE/28377/1.1/ Anolis carolinensis build 1.1 Ab initio model Ab initio GPIPE/28377/1.1/gnomon_prot Anolis carolinensis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Anolis carolinensis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Anopheles gambiae Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Anopheles gambiae RefSeq RefSeq GP/ /RefSeq_ Apis florea build 1.1 Ab initio model Gnomon GPIPE/7463/1.1/gnomon_prot Apis florea build 1.1 Build GPIPE/7463/1.1/ Apis florea Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Apis florea RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Apis mellifera (honey bee) build 2.1 Ab initio model Ab initio GPIPE/7460/2.1/gnomon_prot Apis mellifera build 5 version 1 Build GPIPE/7460/5.1/ Apis mellifera build 5.1 Ab initio model Ab initio GPIPE/7460/5.1/gnomon_prot Apis mellifera Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Official Gene Set 1.0 Apis mellifera Official Gene Set 1.0 GPIPE/7460/5.1/ogs_prot Apis mellifera RefSeq RefSeq GP/ /RefSeq_ Arabidopsis lyrata build 1.1 Ab initio model Ab initio GPIPE/59689/1.1/gnomon_prot Arabidopsis lyrata Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Arabidopsis lyrata RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Arabidopsis thaliana ab initio s Ab initio GPIPE/3702/9.1/gnomon_prot Arabidopsis thaliana build 9.2 Ab initio model Ab initio GPIPE/3702/9.2/gnomon_prot Arabidopsis thaliana Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ genomic/3702/at_genba Arabidopsis thaliana Non-RefSeq nk_prot genomic/3702/at_genbank_prot Page 1

2 Arabidopsis thaliana sequences Arabidopsis thaliana sequences Plants/Arabidopsis_thaliana sequ ences Arabidopsis thaliana RefSeq RefSeq GP/ /RefSeq_ Arabidopsis thaliana RefSeq genomic/3702/at_refp genomic/3702/at_refp Aspergillus clavatus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Aspergillus clavatus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Aspergillus fumigatus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Aspergillus fumigatus Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Aspergillus fumigatus RefSeq RefSeq GP/ /RefSeq_ Aspergillus niger Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Aspergillus niger RefSeq RefSeq GP/ /RefSeq_ Babesia bovis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Babesia bovis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Bacillus anthracis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Bacillus anthracis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein B. vulgaris Non-RefSeq GP/ /B_vulgaris_Non_RefS Beta vulgaris B. vulgaris Non-RefSeq B. vulgaris RefSeq eq_ GP/ /B_vulgaris_RefSeq_pr Beta vulgaris B. vulgaris RefSeq otein Bombus impatiens build 1.1 Ab initio model Ab initio GPIPE/132113/1.1/gnomon_prot Bombus impatiens build 1.1 Build GPIPE/132113/1.1/ Bombus impatiens RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Bombus terrestris build 1.1 Ab initio model Ab initio GPIPE/30195/1.1/gnomon_prot Bombus terrestris build 1.1 Build GPIPE/30195/1.1/ Bombus terrestris Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Bombus terrestris RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Bombyx mori Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Bombyx mori RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Bos taurus build 5 version 2 ab initio models Ab initio GPIPE/9913/5.2/gnomon_prot Bos taurus build 5 version 2 Build GPIPE/9913/5.2/ Bos taurus build 6.1 Ab initio model Ab initio GPIPE/9913/6.1/gnomon_prot Bos taurus build 6.1 Build GPIPE/9913/6.1/ Bos taurus Non-RefSeq Proteins Non-RefSeq Proteins GP/ /Non_RefSeq_Proteins Bos taurus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Brachypodium distachyon build 1.1 Ab initio model Ab initio GPIPE/15368/1.1/gnomon_prot Brachypodium distachyon build 1.1 Build GPIPE/15368/1.1/ Brachypodium distachyon Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Brachypodium distachyon RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Caenorhabditis briggsae build 1.1 Ab initio model Ab initio GPIPE/6238/1.1/gnomon_prot Caenorhabditis briggsae Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Caenorhabditis briggsae RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Caenorhabditis elegans build 9.1 Ab initio model Ab initio GPIPE/6239/9.1/gnomon_prot Caenorhabditis elegans build WS170 Ab initio model Ab initio GPIPE/6239/7.1/gnomon_prot Caenorhabditis elegans build WS190 Ab initio model Ab initio GPIPE/6239/8.1/gnomon_prot Caenorhabditis elegans Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Caenorhabditis elegans RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Callithrix jacchus build 1 version 1 ab initio models Ab initio GPIPE/9483/1.1/gnomon_prot Callithrix jacchus build 1 version 1 Build GPIPE/9483/1.1/ Callithrix jacchus build 1.2 Ab initio and supported model s Gnomon s GPIPE/9483/1.2/gnomon_ Callithrix jacchus build 1.2 s Build s GPIPE/9483/1.2/ Callithrix jacchus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Page 2

3 Callithrix jacchus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Candida albicans Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Candida albicans RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Candida glabrata Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Candida glabrata RefSeq RefSeq GP/ /RefSeq_ Candidatus Cloacamonas acidaminovorans Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Candidatus Cloacamonas acidaminovorans RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Candidatus Kuenenia stuttgartiensis All s All s GP/ /All_s Canis familiaris (dogs) build 2.1 Ab initio model Ab initio GPIPE/9615/2.1/gnomon_prot Canis lupus familiaris build 2.2 Ab initio model Ab initio GPIPE/9615/2.2/gnomon_prot Canis lupus familiaris build 2.2 Build GPIPE/9615/2.2/ Canis lupus familiaris build 3.1 Ab initio model Ab initio GPIPE/9615/3.1/gnomon_prot Canis lupus familiaris build 3.1 Build GPIPE/9615/3.1/ Canis lupus familiaris Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Canis lupus familiaris RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Cavia porcellus build 1.1 Ab initio model Ab initio GPIPE/10141/1.1/gnomon_prot Cavia porcellus build 1.1 Build GPIPE/10141/1.1/ Cavia porcellus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Cavia porcellus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein cdd cdd cdd Cenarchaeum symbiosum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Cenarchaeum symbiosum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein chicken build 1 version 1 Build GPIPE/9031/1.1/ chicken build 2 version 1 Ab initio model Ab initio GPIPE/9031/2.1/gnomon_prot chicken build 2 version 1 Build GPIPE/9031/2.1/ chimpanzee build 1 version 1 Build GPIPE/9598/1.1/ chimpanzee build 2 version 1 Ab initio model Ab initio GPIPE/9598/2.1/gnomon_prot chimpanzee build 2 version 1 Build GPIPE/9598/2.1/ Chlamydomonas reinhardtii Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Chlamydomonas reinhardtii RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Ciona intestinalis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ciona intestinalis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein cow build 4 version 1 Ab initio model Ab initio GPIPE/9913/4.1/gnomon_prot cow build 4 version 1 Build GPIPE/9913/4.1/ Cow non-refseq Cow non-refseq genomic/9913/other_ Cow RefSeq Cow RefSeq genomic/9913/refseq_ Cricetulus griseus build 1.1 Ab initio model Ab initio GPIPE/10029/1.1/gnomon_prot Cricetulus griseus build 1.1 Build GPIPE/10029/1.1/ Cricetulus griseus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Cricetulus griseus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Cryptococcus neoformans Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Cryptococcus neoformans RefSeq RefSeq GP/ /RefSeq_ Cryptosporidium hominis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Cryptosporidium hominis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Cryptosporidium parvum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Cryptosporidium parvum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Culex quinquefasciatus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Culex quinquefasciatus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Cyanidioschyzon merolae strain 10D Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Cyanidioschyzon merolae strain 10D RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Page 3

4 Danio rerio build 4 version 1 ab initio model Ab initio GPIPE/7955/4.1/gnomon_prot Danio rerio build 4 version 1 Build GPIPE/7955/4.1/ Danio rerio build 5 version 1 Build GPIPE/7955/5.1/ Danio rerio build 5.1 Ab initio model Ab initio GPIPE/7955/5.1/gnomon_prot Danio rerio Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Danio rerio RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein title ecoli.aa ecoli.aa title ecoli ecoli title drosoph drosoph title alu alu Debaryomyces hansenii Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Debaryomyces hansenii RefSeq RefSeq GP/ /RefSeq_ Dengue virus s Dengue virus genomic/viruses/dengue_virus Dictyostelium discoideum Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Dictyostelium discoideum RefSeq RefSeq GP/ /RefSeq_ dog build 2 version 1 Build GPIPE/9615/2.1/ Drosophila ananassae Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila ananassae RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila erecta Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila erecta RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila grimshawi Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila grimshawi RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila melanogaster build 9 version 3 ab initio model Ab initio GPIPE/7227/9.3/gnomon_prot Drosophila melanogaster build 9.4 Ab initio model Ab initio GPIPE/7227/9.4/gnomon_prot Drosophila melanogaster Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Drosophila melanogaster RefSeq RefSeq GP/ /RefSeq_ Drosophila melanogaster Release 5.10 Ab initio model Ab initio GPIPE/7227/9.2/gnomon_prot Drosophila mojavensis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila mojavensis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila persimilis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila persimilis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila pseudoobscura Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila pseudoobscura pseudoobscura RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila pseudoobscura Release 2.0 Ab initio model Ab initio GPIPE/7237/1.1/gnomon_prot Drosophila pseudoobscura Release 2.3 Ab initio model Ab initio GPIPE/7237/1.2/gnomon_prot Drosophila sechellia Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila sechellia RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila simulans Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila simulans RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila virilis build 1.1 Ab initio model Ab initio GPIPE/7244/1.1/gnomon_prot Drosophila virilis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila virilis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila willistoni Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila willistoni RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Drosophila yakuba Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Drosophila yakuba RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Encephalitozoon cuniculi Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Encephalitozoon cuniculi RefSeq RefSeq GP/ /RefSeq_ Equus caballus build 2.2 Ab initio model Ab initio GPIPE/9796/2.2/gnomon_prot Equus caballus build 2.2 Build GPIPE/9796/2.2/ Equus caballus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Page 4

5 Equus caballus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Eremothecium gossypii Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Eremothecium gossypii RefSeq RefSeq GP/ /RefSeq_ Escherichia coli Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Escherichia coli RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Felis catus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Felis catus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Gallus gallus (chicken) build 1.1 Ab initio model Ab initio GPIPE/9031/1.1/gnomon_prot Gallus gallus build 3.1 Ab initio model Ab initio GPIPE/9031/3.1/gnomon_prot Gallus gallus build 3.1 Build GPIPE/9031/3.1/ Gallus gallus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Gallus gallus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Gasterosteus aculeatus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Gasterosteus aculeatus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Giardia intestinalis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Giardia intestinalis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Gibberella zeae Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Gibberella zeae RefSeq RefSeq GP/ /RefSeq_ Glycine max build 1.1 Ab initio model Ab initio GPIPE/3847/1.1/gnomon_prot Glycine max build 1.1 Build GPIPE/3847/1.1/ Glycine max Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Glycine max RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein gray short-tailed opossum build 2 version 1 Ab initio model Ab initio GPIPE/13616/2.1/gnomon_prot gray short-tailed opossum build 2 version 1 Build GPIPE/13616/2.1/ Guillardia theta Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Guillardia theta RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Hemiselmis andersenii Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Hemiselmis andersenii RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Homo sapiens build 37 version 2 ab initio models Ab initio GPIPE/9606/37.2/gnomon_prot Homo sapiens build 37 version 2 Build GPIPE/9606/37.2/ Homo sapiens build 37.3 Ab initio model Ab initio GPIPE/9606/37.3/gnomon_prot Homo sapiens build 37.3 Build GPIPE/9606/37.3/ Homo sapiens build 37.4 Ab initio and supported model s Gnomon s Page 5 GPIPE/9606/37.4/gnomon_ Homo sapiens build 37.4 s Build s GPIPE/9606/37.4/ Homo sapiens Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Homo sapiens RefSeq RefSeq GP/ /RefSeq_ honey bee build 2 version 1 Build GPIPE/7460/2.1/ honey bee build 4 version 1 Ab initio model Ab initio GPIPE/7460/4.1/gnomon_prot honey bee build 4 version 1 Build GPIPE/7460/4.1/ preliminary Official honey bee preliminary Official Gene Set Gene Set GPIPE/7460/4.1/ogs_prot Hordeum vulgare Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Hordeum vulgare RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein horse build 1 version 1 Ab initio model Ab initio GPIPE/9796/1.1/gnomon_prot horse build 1 version 1 Build GPIPE/9796/1.1/ horse build 2 version 1 Ab initio model Ab initio GPIPE/9796/2.1/gnomon_prot horse build 2 version 1 Build GPIPE/9796/2.1/ hot springs metagenome All s All s GP/ /All_s hot springs metagenome All s All s GP/ /All_s hot springs metagenome All s All s GP/ /All_s human build 36 version 3 Ab initio model Ab initio GPIPE/9606/36.3/gnomon_prot human build 36 version 3 Build GPIPE/9606/36.3/

6 human gut metagenome All s All s GP/ /All_s Human non-refseq Human non-refseq genomic/9606/other_ Human RefSeq Human RefSeq genomic/9606/refseq_ human_gl_v.old.prot human_gl_v.old IG_DB/human_gl_V.old human_gl_v.prot human_gl_v IG_DB/human_gl_V Hydra magnipapillata Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Hydra magnipapillata RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Ictalurus punctatus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ictalurus punctatus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein igseqprot igseq IG_DB/igseq imgt.homo_sapiens.v.f. imgt.homo_sapiens.v.f.orf_prot orf IG_DB/imgt.Homo_sapiens.V.f.orf imgt.homo_sapiens.v.f. IG_DB/imgt.Homo_sapiens.V.f.orf.include imgt.homo_sapiens.v.f.orf.include_orp_prot orf.include_orp _orp imgt.homo_sapiens.v.f.orf.p_prot imgt.homo_sapiens.v.f.orf.p.include_orp_prot imgt.homo_sapiens.v.p_prot imgt.homo_sapiens.v.p.include_orp_prot imgt.homo_sapiens.v.f. orf.p imgt.homo_sapiens.v.f. orf.p.include_orp IG_DB/imgt.Homo_sapiens.V.f.orf.p IG_DB/imgt.Homo_sapiens.V.f.orf.p.inclu de_orp imgt.homo_sapiens.v.p IG_DB/imgt.Homo_sapiens.V.p imgt.homo_sapiens.v.p IG_DB/imgt.Homo_sapiens.V.p.include_o.include_orp rp imgt.mus.v.f.orf_prot imgt.mus.v.f.orf IG_DB/imgt.Mus.V.f.orf imgt.mus.v.f.orf.include imgt.mus.v.f.orf.include_orp_prot _orp IG_DB/imgt.Mus.V.f.orf.include_orp imgt.mus.v.f.orf.p_prot imgt.mus.v.f.orf.p IG_DB/imgt.Mus.V.f.orf.p imgt.mus.v.f.orf.p.includ imgt.mus.v.f.orf.p.include_orp_prot e_orp IG_DB/imgt.Mus.V.f.orf.p.include_orp imgt.mus.v.p_prot imgt.mus.v.p IG_DB/imgt.Mus.V.p imgt.oryctolagus_cunic imgt.oryctolagus_cuniculus.v.f.orf_prot ulus.v.f.orf IG_DB/imgt.Oryctolagus_cuniculus.V.f.orf imgt.oryctolagus_cunic IG_DB/imgt.Oryctolagus_cuniculus.V.f.orf. imgt.oryctolagus_cuniculus.v.f.orf.p_prot ulus.v.f.orf.p imgt.oryctolagus_cunic p imgt.oryctolagus_cuniculus.v.p_prot ulus.v.p IG_DB/imgt.Oryctolagus_cuniculus.V.p imgt.rattus_norvegicus. imgt.rattus_norvegicus.v.f.orf_prot V.f.orf IG_DB/imgt.Rattus_norvegicus.V.f.orf imgt.rattus_norvegicus. imgt.rattus_norvegicus.v.f.orf.p_prot V.f.orf.p IG_DB/imgt.Rattus_norvegicus.V.f.orf.p imgt.rattus_norvegicus. imgt.rattus_norvegicus.v.p_prot V.p IG_DB/imgt.Rattus_norvegicus.V.p Ixodes scapularis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ixodes scapularis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein jewel wasp build 1 version 1 Ab initio model Ab initio GPIPE/7425/1.1/gnomon_prot jewel wasp build 1 version 1 Build GPIPE/7425/1.1/ Kluyveromyces lactis Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Kluyveromyces lactis RefSeq RefSeq GP/ /RefSeq_ Leishmania braziliensis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Leishmania braziliensis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Leishmania infantum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Leishmania infantum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Leishmania major Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Leishmania major RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Leptospirillum sp. Group III Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Lotus japonicus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Lotus japonicus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Loxodonta africana build 1.1 Ab initio model Ab initio GPIPE/9785/1.1/gnomon_prot Loxodonta africana build 1.1 Build GPIPE/9785/1.1/ Loxodonta africana Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Page 6

7 Loxodonta africana RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Macaca mulatta build 1 version 2 ab initio models Ab initio GPIPE/9544/1.2/gnomon_prot Macaca mulatta build 1 version 2 Build GPIPE/9544/1.2/ Macaca mulatta Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Macaca mulatta RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Magnaporthe oryzae Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Magnaporthe oryzae RefSeq RefSeq GP/ /RefSeq_ Manihot esculenta Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Manihot esculenta RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein marine metagenome All s All s GP/ /All_s marine metagenome All s All s GP/ /All_s marine metagenome All s All s GP/ /All_s marine metagenome All s All s GP/ /All_s marine metagenome All s All s GP/ /All_s marine metagenome All s All s GP/ /All_s Medicago truncatula build 1.1 Ab initio model Ab initio GPIPE/3880/1.1/gnomon_prot Medicago truncatula Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Medicago truncatula RefSeq RefSeq GP/ /RefSeq_ Megachile rotundata build 1.1 Ab initio model Gnomon GPIPE/143995/1.1/gnomon_prot Megachile rotundata build 1.1 Build GPIPE/143995/1.1/ Megachile rotundata RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Meleagris gallopavo build 1 version 1 Build GPIPE/9103/1.1/ Meleagris gallopavo build 1.1 Ab initio model Ab initio GPIPE/9103/1.1/gnomon_prot Meleagris gallopavo Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Meleagris gallopavo RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein metagenome sequence All s All s GP/ /All_s metagenome sequence All s All s GP/ /All_s Metaseiulus occidentalis build 1.1 Ab initio and supported model s Gnomon s GPIPE/34638/1.1/gnomon_ Metaseiulus occidentalis build 1.1 s Build s GPIPE/34638/1.1/ Metaseiulus occidentalis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Microbial s from nr Microbial s Microbial_s Monodelphis domestica build 2.2 Ab initio model Ab initio GPIPE/13616/2.2/gnomon_prot Monodelphis domestica build 2.2 Build GPIPE/13616/2.2/ Monodelphis domestica Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Monodelphis domestica RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein mosses build 1 version 1 Ab initio model Ab initio GPIPE/3218/1.1/gnomon_prot mouse build 36 version 1 Ab initio model Ab initio GPIPE/10090/36.1/gnomon_prot mouse build 36 version 1 Build GPIPE/10090/36.1/ Mouse non-refseq Mouse non-refseq genomic/10090/other_ Mouse RefSeq Mouse RefSeq genomic/10090/refseq_ mouse_gl_v.prot mouse_gl_v IG_DB/mouse_gl_V Mus musculus build 37 version 2 ab initio models Ab initio GPIPE/10090/37.2/gnomon_prot Mus musculus build 37 version 2 Build GPIPE/10090/37.2/ Mus musculus build 38.1 Ab initio model Gnomon GPIPE/10090/38.1/gnomon_prot Mus musculus build 38.1 Build GPIPE/10090/38.1/ Mus musculus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Mus musculus RefSeq RefSeq GP/ /RefSeq_ 64-rbcL-FINAL-aligned.fas BPA_Test/64-rbcL-FINAL-aligned.fas my title Page 7

8 Nasonia All Nasonia Non-RefSeq Protein Nasonia vitripennis build 2.1 Ab initio model Ab initio GPIPE/7425/2.1/gnomon_prot Nasonia vitripennis build 2.1 Build GPIPE/7425/2.1/ Nasonia vitripennis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Nasonia vitripennis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein NCBI Mitochondrial Protein Reference Sequences mito mito NCBI Protein Reference Sequences refseq_ refseq_ NCBI Protein Sequences prot_dbs prot_dbs Neurospora crassa Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Neurospora crassa RefSeq RefSeq GP/ /RefSeq_ Nomascus leucogenys build 1.1 Ab initio model Ab initio GPIPE/61853/1.1/gnomon_prot Nomascus leucogenys build 1.1 Build GPIPE/61853/1.1/ Nomascus leucogenys Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Nomascus leucogenys RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Non-redundant UniProtKB/SwissProt sequences. swissprot swissprot oasis_cog oasis_cog oasis_cog oasis_kog oasis_kog oasis_kog oasis_pfam oasis_pfam oasis_pfam oasis_smart oasis_smart oasis_smart Official Gene Set 1.2 Official Gene Set 1.2 GPIPE/7425/2.1/ogs_prot Oncorhynchus mykiss Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Oncorhynchus mykiss RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Oreochromis niloticus build 1.1 Ab initio model Ab initio GPIPE/8128/1.1/gnomon_prot Oreochromis niloticus build 1.1 Build GPIPE/8128/1.1/ Oreochromis niloticus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Oreochromis niloticus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Ornithorhynchus anatinus build 1.2 Ab initio model Ab initio GPIPE/9258/1.2/gnomon_prot Ornithorhynchus anatinus build 1.2 Build GPIPE/9258/1.2/ Ornithorhynchus anatinus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ornithorhynchus anatinus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Oryctolagus cuniculus build 1 version 1 ab initio model Ab initio GPIPE/9986/1.1/gnomon_prot Oryctolagus cuniculus build 1 version 1 Build GPIPE/9986/1.1/ Oryctolagus cuniculus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Oryctolagus cuniculus RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Oryza sativa (rice) RAP Build 3 Ab initio model Ab initio Oryza sativa sequences All Nasonia Non-RefSeq GP/ /All_Nasonia_Non_RefSe Protein q_protein GPIPE/4530/4.1/gnomon_prot Oryza sativa build 5.1 Ab initio model Ab initio GPIPE/4530/5.1/gnomon_prot O. sativa (indica Oryza sativa Indica Group O. sativa (indica cultivar-group) Non- cultivar-group) Non- GP/ /O_sativa_indica_cultivar_ RefSeq Protein RefSeq Protein group_ Oryza sativa Japonica Group O. sativa (japonica cultivar-group) Non-RefSeq Oryza sativa Japonica Group O. sativa (japonica cultivar-group) RefSeq O. sativa (japonica cultivar-group) Non- RefSeq O. sativa (japonica cultivar-group) RefSeq Oryza sativa sequences GP/ /O_sativa_japonica_cultiv ar_group_ GP/ /O_sativa_japonica_cultiv ar_group_refseq Plants/Oryza_sativa sequences Oryzias latipes Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Oryzias latipes RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Ostreococcus 'lucimarinus' Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ostreococcus 'lucimarinus' RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Otolemur garnettii build 1.1 Ab initio and supported model s Gnomon s GPIPE/30611/1.1/gnomon_ Page 8

9 Otolemur garnettii build 1.1 s Build s GPIPE/30611/1.1/ Otolemur garnettii Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Otolemur garnettii RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Ovis aries Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Ovis aries RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Pan paniscus build 1.1 Ab initio and supported model s Gnomon s GPIPE/9597/1.1/gnomon_ Pan paniscus build 1.1 s Build s GPIPE/9597/1.1/ Pan troglodytes (chimpanzee) build 1.1 Ab initio model Ab initio GPIPE/9598/1.1/gnomon_prot Pan troglodytes build 3.1 Ab initio model Ab initio GPIPE/9598/3.1/gnomon_prot Pan troglodytes build 3.1 Build GPIPE/9598/3.1/ Pan troglodytes Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Pan troglodytes RefSeq RefSeq GP/ /RefSeq_ Papio anubis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Papio anubis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Paramecium tetraurelia Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Paramecium tetraurelia RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein PDB pdbaa pdbaa PDB pdb pdb pea aphid build 1 version 1 Ab initio model Ab initio GPIPE/7029/1.1/gnomon_prot pea aphid build 1 version 1 Build GPIPE/7029/1.1/ Pediculus humanus corporis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Pediculus humanus corporis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Physcomitrella patens Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Physcomitrella patens RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein pig build 1 version 1 Ab initio model Ab initio GPIPE/9823/1.1/gnomon_prot pig build 1 version 1 Build GPIPE/9823/1.1/ Plasmodium berghei Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Plasmodium berghei RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Plasmodium chabaudi chabaudi Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Plasmodium chabaudi chabaudi RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Plasmodium falciparum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Plasmodium falciparum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein P. yoelii Non-RefSeq GP/ /P_yoelii_Non_RefSeq_Pro Plasmodium yoelii P. yoelii Non-RefSeq Protein Protein tein Plasmodium yoelii P. yoelii RefSeq Protein P. yoelii RefSeq Protein GP/ /P_yoelii_RefSeq_Protein platypus build 1 version 1 Ab initio model Ab initio GPIPE/9258/1.1/gnomon_prot platypus build 1 version 1 Build GPIPE/9258/1.1/ Pongo abelii build 1 version 2 ab initio models Ab initio GPIPE/9601/1.2/gnomon_prot Pongo abelii build 1 version 2 Build GPIPE/9601/1.2/ Pongo abelii build 1.3 Ab initio and supported model s Gnomon s GPIPE/9601/1.3/gnomon_ Pongo abelii build 1.3 s Build s GPIPE/9601/1.3/ Pongo abelii Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Pongo abelii RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Populus trichocarpa (poplar) Build 1.2 Ab initio model Ab initio GPIPE/3694/1.2/gnomon_prot Populus trichocarpa build 2.3 Ab initio model Ab initio GPIPE/3694/2.3/gnomon_prot Populus trichocarpa Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Protein sequences derived from the Patent division of GenBank pataa pataa Protein sequences derived from the Patent division of GenBank pat pat Proteins from WGS metagenomic projects (env_nr). env_nr env_nr purple sea urchin build 1 version 1 Build GPIPE/7668/1.1/ Page 9

10 purple sea urchin build 2 version 1 Ab initio model Ab initio GPIPE/7668/2.1/gnomon_prot purple sea urchin build 2 version 1 Build GPIPE/7668/2.1/ rat build 3 version 1 Ab initio model Ab initio GPIPE/10116/3.1/gnomon_prot rat build 3 version 1 Build GPIPE/10116/3.1/ Rattus norvegicus build 4 version 2 ab initio models Ab initio GPIPE/10116/4.2/gnomon_prot Rattus norvegicus build 4 version 2 Build GPIPE/10116/4.2/ Rattus norvegicus build 5.1 Ab initio and supported model s Gnomon s GPIPE/10116/5.1/gnomon_ Rattus norvegicus build 5.1 s Build s GPIPE/10116/5.1/ Rattus norvegicus Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Rattus norvegicus RefSeq RefSeq GP/ /RefSeq_ red flour beetle build 1 version 1 Build GPIPE/7070/1.1/ red flour beetle build 2 version 1 Ab initio model Ab initio GPIPE/7070/2.1/gnomon_prot red flour beetle build 2 version 1 Build GPIPE/7070/2.1/ rhesus monkey build 1 version 1 Ab initio model Ab initio GPIPE/9544/1.1/gnomon_prot rhesus monkey build 1 version 1 Build GPIPE/9544/1.1/ Saccharomyces cerevisiae Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Saccharomyces cerevisiae RefSeq RefSeq GP/ /RefSeq_ Saccoglossus kowalevskii build 1 version 1 ab initio model Ab initio GPIPE/10224/1.1/gnomon_prot Saccoglossus kowalevskii build 1 version 1 Build GPIPE/10224/1.1/ Saccoglossus kowalevskii Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Saccoglossus kowalevskii RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Salmo salar Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Salmo salar RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Sarcophilus harrisii build 1.1 Ab initio and supported model s Gnomon s GPIPE/9305/1.1/gnomon_ Sarcophilus harrisii build 1.1 s Build s GPIPE/9305/1.1/ Sarcophilus harrisii Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Sarcophilus harrisii RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Scheffersomyces stipitis Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Scheffersomyces stipitis RefSeq RefSeq GP/ /RefSeq_ Schizosaccharomyces pombe Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Schizosaccharomyces pombe RefSeq RefSeq GP/ /RefSeq_ sea squirt build 1 version 1 Ab initio model Ab initio GPIPE/7719/1.1/gnomon_prot sea squirt build 1 version 1 Build GPIPE/7719/1.1/ Selaginella moellendorffii Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Selaginella moellendorffii RefSeq RefSeq GP/ /RefSeq_ soil metagenome All s All s GP/ /All_s soil metagenome All s All s GP/ /All_s Solanum lycopersicum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Solanum lycopersicum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Solanum tuberosum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Solanum tuberosum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Sorghum bicolor build 1.1 Ab initio model Ab initio GPIPE/4558/1.1/gnomon_prot Sorghum bicolor Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Sorghum bicolor RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Strongylocentrotus purpuratus (purple sea urchin) build 1.1 Ab initio model Ab initio GPIPE/7668/1.1/gnomon_prot Strongylocentrotus purpuratus build 3.1 Ab initio and supported model s Gnomon s GPIPE/7668/3.1/gnomon_ Strongylocentrotus purpuratus build 3.1 s Build s GPIPE/7668/3.1/ Strongylocentrotus purpuratus Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Page 10

11 Strongylocentrotus purpuratus RefSeq RefSeq GP/ /RefSeq_ Sus scrofa build 2 version 1 ab initio model Ab initio GPIPE/9823/2.1/gnomon_prot Sus scrofa build 2 version 1 Build GPIPE/9823/2.1/ Sus scrofa build 3.1 Ab initio model Ab initio GPIPE/9823/3.1/gnomon_prot Sus scrofa build 3.1 Build GPIPE/9823/3.1/ Sus scrofa build 4.1 Ab initio model Ab initio GPIPE/9823/4.1/gnomon_prot Sus scrofa build 4.1 Build GPIPE/9823/4.1/ Sus scrofa Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Sus scrofa RefSeq RefSeq GP/ /RefSeq_ Taeniopygia guttata Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Taeniopygia guttata RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Takifugu rubripes Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Takifugu rubripes RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein termite gut metagenome All s All s GP/ /All_s Tetrahymena thermophila Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Tetrahymena thermophila RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein thale cress build 8 version 1 Ab initio model Ab initio GPIPE/3702/8.1/gnomon_prot Theileria annulata Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Theileria annulata RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Theileria parva strain Muguga RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Tribolium castaneum (red flour beetle) Build 1.1 Ab initio model Ab initio GPIPE/7070/1.1/gnomon_prot Tribolium castaneum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Official Gene Set GP/ /Official_Gene_Set_protei Tribolium castaneum Official Gene Set n Tribolium castaneum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Trichomonas vaginalis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Trichomonas vaginalis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Triticum aestivum Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Triticum aestivum RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Trypanosoma brucei TREU927 RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein uncultured Termite group 1 bacterium phylotype Rs-D17 Non- RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein uncultured Termite group 1 bacterium phylotype Rs-D17 RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein UNSWIgVRepertoire_fa UNSWIgVRepertoire_fasta.txt_prot sta.txt IG_DB/UNSWIgVRepertoire_fasta.txt User requested non-live set urp urp Ustilago maydis Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Ustilago maydis RefSeq RefSeq GP/ /RefSeq_ Vitis vinifera build 2.1 Ab initio model Ab initio GPIPE/29760/2.1/gnomon_prot Vitis vinifera build 2.1 Build GPIPE/29760/2.1/ Vitis vinifera Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Vitis vinifera RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein West Nile virus s West Nile virus genomic/viruses/west_nile_virus wine grape build 1 version 1 Ab initio model Ab initio GPIPE/29760/1.1/gnomon_prot wine grape build 1 version 1 Build GPIPE/29760/1.1/ Xenopus (Silurana) tropicalis build 1 version 1 ab initio model Ab initio GPIPE/8364/1.1/gnomon_prot Xenopus (Silurana) tropicalis build 1 version 1 Build GPIPE/8364/1.1/ Xenopus (Silurana) tropicalis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Xenopus (Silurana) tropicalis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Xenopus laevis Non-RefSeq Protein Non-RefSeq Protein GP/ /Non_RefSeq_Protein Xenopus laevis RefSeq Protein RefSeq Protein GP/ /RefSeq_Protein Yarrowia lipolytica Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Page 11

12 Yarrowia lipolytica RefSeq RefSeq GP/ /RefSeq_ yeast yeast yeast yeast.aa yeast.aa yeast.aa Zea mays subsp. mays Non-RefSeq Non-RefSeq GP/ /Non_RefSeq_ Zea mays subsp. mays RefSeq RefSeq GP/ /RefSeq_ Z. mays Non-RefSeq GP/ /Z_mays_Non_RefSeq_Pro Zea mays Z. mays Non-RefSeq Protein Protein tein zebra finch build 1 version 1 Ab initio model Ab initio GPIPE/59729/1.1/gnomon_prot zebra finch build 1 version 1 Build GPIPE/59729/1.1/ zebrafish build 3 version 1 Ab initio model Ab initio GPIPE/7955/3.1/gnomon_prot zebrafish build 3 version 1 Build GPIPE/7955/3.1/ Page 12