LINKAGE EFFECTS ON ADDITIVE GENETIC VARIANCE AMONG HOMOZYGOUS LINES ARISING FROM THE CROSS BETWEEN TWO HOMOZYGOUS PARENTS

Size: px
Start display at page:

Download "LINKAGE EFFECTS ON ADDITIVE GENETIC VARIANCE AMONG HOMOZYGOUS LINES ARISING FROM THE CROSS BETWEEN TWO HOMOZYGOUS PARENTS"

Transcription

1 LINKAGE EFFECTS ON ADDITIVE GENETIC VARIANCE AMONG HOMOZYGOUS LINES ARISING FROM THE CROSS BETWEEN TWO HOMOZYGOUS PARENTS W. D. HANSON AND B. I. HAYMAN Department of Genetics, North Carolina State College, Raleigh, North Carolina and Applied Mathematics Laboratory, Christchurch, New Zealand Received December 26, 1962 evaluation of linkage effects represents an area of theoretical genetic TEearch on quantitative genetic characterization where there exists a multitude of problems with few solutions. SCHNELL S work (1961, 1963) represented the first general solution of the effects of linkage on genetic variances estimated from mating designs imposed within genetic populations at linkage equilibrium. The problem is complicated when considering quantitative genetic studies in an organism such as a self-pollinated species where the initial cross is normally made between two homozygous parents, and the reference (F,) population is in linkage disequilibrium. MATHER S solution (1949) and the general solution of GATES, COMSTOCK, and ROBINSON (1957) considered linkage in this context, as did COMSTOCK and ROBINSON S ( 1952) evaluation of the mating system (defined as Design 111) for measuring degree of dominance. These three solutions required a pairwise evaluation of linked loci which is difficult to interpret in the context of n linked loci. This paper is designed to evaluate as a general concept the effect of linkage on genetic variance estimates. Inbred relatives from homozygous parents will be considered which represents the typical quantitative genetic study reported in self-pollinated crops ( HANSON 1961 ). The development considers random homozygous lines arising from the cross between two homozygous parents where m generations of intermating are introduced after the F, generation, prior to selfing. The base unit for inheritance will be the chromosome, and the number (n) of linked loci at which the two parents differ will be general. One of the objectives for this paper is to develop a procedure for describing the effects of linkage when the material is initially at linkage disequilibrium. The simplest case involves the variability among random homozygous lines from a cross between two3 homozygous lines, and is considered in this paper. The technique is being extended to the effects of linkage on the variability of family means involving homozygous lines and on the dominance estimates obtained from Design I11 of 1Published as Journal Paper No of the North Carolina Agricultural Experiment Station and supported in part by grants from the Rockefeller Foundation and the National! Institutes of Health. Genetics 48: June 1963.

2 756 W. D. HANSON AND B. I. HAYMAN COMSTOCK and ROBINSON ( 1952). Further, the description of linkage effects and the effects of intermating upon the genetic variability of material arising from two homozygous parents are of extreme interest to both quantitative geneticists and plant breeders working with self-pollinated or open-pollinated crops. THEORETICAL DEVELOPMENT Assumptions. Some simplifying assumptions are necessary for this development: (i) The loci at which two parents differ all contribute equally without epistasic interactions and are equally spaced with respect to the genetic map scale for a chromosome, and (ii) the occurrence of a favorable or unfavorable condition of a locus at a position within a progenitor chromosome is random, subject to the restriction that nq favorable loci are contributed by one parent and n (l-q) by the second. Gene frequencies are one half. The manner in which these assumptions may bias the results will be noted later. Chromosome effects. The system is initiated by the crossing of two homozygous parents giving two progenitor chromosome types with respect to a pair of homologues. Identify the homozygous types by b and c. The two homologues differ at n loci with nq favorable and n( 1-9) unfavorable genes being identified with chromosome type b. If the genetic values of a locus in the two phases are coded +1 and -1, the most favorable homozygous chromosome effect would be n and the most unfavorable homozygous chromosome effect would be -n. The genetic values of the parents are xb = [q- (I-q) ] n = (2q-1) n and x, -(2q-1) n. Genetic variance and linkage. The average recombination per chromosome has been defined by GRIFFING (1960) and extended for a mating system by HANSON (1962). Suppose that n loci are segregating in one linkage group and that after the mating procedure nb of these loci in a gamete are derived from one parental chromosome and n, of these loci from the other parental chromosome. The total number of linkage pairs is n(n-l)/2 and the number of pairs not in the initial linkage phase is nbn,. The average recombination is defined to be the proportion of new linkage pairs, p(n,nb) = 2nbn,/n(n-l). (1) The genetic value of a homozygous individual depends on the proportions of favorable and unfavorable loci contributed by each progenitor. Suppose that each progenitor contributes nb and n, loci respectively and that nb. and n,. of each set are favorable and nb2 and ncz unfavorable. Then the genetic value of the individual is X = nbl- nbz + n,, - ncz. Since nbl+ ncz = qn and nbz + nc1 = ( 1-q) n, X(n,nbl,nbz) = 2(nbl-nb2) - (2q-l)n. Given the average recombination p, the genetic value X will vary with the partitioning of nb into nbl favorable and nb2 unfavorable loci. Each p will be associated with a range of X. The nb loci of one progenitor type are a sample from a population of n loci divided into favorable and unfavorable in the propor-

3 LINKAGE AND VARIANCE 75 7 tion q: ( 1-4). The proportion of favorable loci in the nb loci follows a hypergeometric distribution so that E(nb1 I n7q7nb) = qnb and var(nbl I n,q,nb) = E(nb1- qnb)2 = q( 1-q) nbnc/(n-l). Since nbl + nb2 = n b, X = 4nb1-2nb - (2q-1)n =4(nbl--nb) + (2q-1)(212b-T2). Hence, E(X2 I n,q,nb) = 16E(nb1 - qnb) + (2q-1) (2121, - n)2 = 16q(l-q)nbnc/(n-l) + (29-1)*(nZ-4nbn,). Since from (1 ) nbnc = n (n-1) p (%nb)/2, E(X2 I n,q,nb) = n (2q-1)2(1-2p) + 2np, (2) where it is understood that p is an average over the same class of individuals as specified for the expectation of X2. Now E (X I n,q,nb) = (2q-1) (2nb-n), which is not generally zero so that E ( X2 I n,q,nb) is not a variance. In deriving the expectation of the average recohbination, HANSON ( 1962) considered firstly homologous chromosomes with given nb (y in that paper), secondly the wider class with a given number of recombinations z, and thirdly the still wider class with a Poisson distribution of z based on an average equivalent map length s. Equivalent map length was used to describe that hypothetical map length which would generate the distribution of z for a mating system in one meiotic cycle. Following the same sequence of widening classes, it is clear that so that E(nb I n,z) =E(nb I n,s ) = n/2 E(X I n,q,z) = E(X 1 n,q,s ) = 0. Hence from (2), var(x I n,q,z) =E(Xa I n,q,z) = n2(2q-1)2(1-2p) + 2np, var(x I n,q,s ) =E(Xa I n,q,s ) = n2(2q-1)2(1-2p) + 2np with the same understanding about the scope of p as noted for (2). At linkage equilibrium s is large and p = % (see (6) and (9)) so that var (X I n,q) = n. The relative genetic variance at disequilibrium is R(n,q,s ) = var(x I n,q,s )/var(x I n,q) = n(2q-l)2(1--2p) + 2p. (5) HANSON (1962, Table 3) gives values of p for N = n-1 and s, from which R(n,q,s ) may be calculated. The appendix contains the derivation of exact formulas for p(n,z) and p(n,s ). (3) (4) DISCUSSION Effects of parameters on R(n,q,s ). The relation (5) for the relative genetic variance may be written R (n,q,s ) = d( 1-2p) + 2p, (5a)

4 758 W. D. HANSON AND B. I. HAYMA?; where d = n(2q-l)?. R is a bilinear function of the two parameter5 d a u p ~ which are in turn functions of the four basic parameters: n, the number of loci on a chromosome; q, the proportion of favorable loci in the better parent; s, the genetic map length; and m, the number of generations of intermating. Different combinations of n, q, s, and m can produce the same value of R, and different combinations of n, 4, and s can produce the same trend in R with increasing generations of intermating, m. Conversely, a value of, or trend in, R does not permit an inference to the value of n, q, s, and m unless three of these parameters are already known from other sources. However, a consideration of the functional form of R can show how the parameters are combined, and if any special circumstances exist, in which inferences about the parameters are possible. Two of the parameters, s, and m, are always combined (HANSON 1959) into the equivalent map length s = s (mf4)/2. (6) Since s is fixed in an experiment, s varies directly with m, and s only influences the rate of change of s relative to m. The average recombination p is determined by n and s according to formula (Io) or HANSON S (1 962) Table 3. p increases with increasing s to a limit of one half (see (9) and (12)). It decreases with increasing n to a limit determined by s, and for n > 10, p is virtually independent of n and has the approximate value (formula 11 ) : p(s ) = (1-2s + 2s Z - e-z~ )/4s ~. Since in practice n is usually greater than ten, the one apparent disadvantage of (5a), that both d and p are influenced by n, is usually not important. The relative genetic variance (5a) contains two terms. The first term d( 1-2p) vanishes when q = or the initial parents have equal genetic values. It can be termed the main component of the genetic variance. The second term 2p arises from sampling the initial chromosomes. Both components are influenced by the parameters. From the previous discussion it is clear that the main component increases with increasing n and q but decreases with increasing m. The sampling component decreases with increasing n, is unaffected by q, and increases with increasing m. Total genetic variance evidently increases with increasing q, but the effects of n and m on the total genetic variance are not clear since they each influence the two components in opposite directions. Another way of writing (5) is R(n,q,s ) - 1 = (d-i) (1-2p). (5b) Since (1-2p) is positive, R is greater or less than unity according as d is greater or less than unity. The sole determiner here of whether relative genetic variance is above or below its value at linkage equilibrium is n(2q-l)2, and this is so whatever the map length or the extent of intermating. When q is within the range of 1/2 i. 1/2v ; or n < 1/(2q-l), the relative genetic variance is below its equilibrium value. When d increases with p held constant, then R increases and this confirms the increase in R with q noted above. When p increases with d held constant, R decreases or increases according as d is greater or less than one, and this must be

5 LINKAGE AND VARIANCE 759 the pattern of change in R with change in m. Figures 1 to 3 illustrate this change in relative genetic variance with continued intermating and for various values of q and n. As intermating proceeds, p tends to % and R approaches one either from above or below according to the sign of (d-1 ). This trend in genetic variance with increasing intermating seems to permit one inference about the parameters. If the variance increases, then n (2q-1) 2< 1, SO that either q is near % or the number of loci is small. Conversely, if two similar parents produce a large genetic variance which decreases on intermating n (2q-1) > 1 and the number of loci must be large. The effect of n on R is still complicated because it influences both d and p. If d>l, relation (5b) shows that R increases with n, and this is probably the usual situation in practice. However, when q = 1/, d = 0 and R(n,%,s') = 2p. Only the sampling component remains and this decreases with increasing n. When O<d<l, an intermediate situation may prevail, and R may decrease initially before finally increasing with n. Average R(n,q,s'). The complete lack of information about n, q, and s' in a study complicates the generalization which can be made. It would be desirable to M 3 \ , U) t lo.55 x) FIGURES 1-3.-Relative genetic variance among random homozygous lines R (n, g, s'), if m generations of intermating were imposed on the F, generation. FIGURE 1.-Given 11 loci equally spaced on a genetic map of 100 centimorgans in length and selected levels of 9 (.50, 50,.70,.80, and.go). FIGURE 2.-Given 50 loci equally spaced on a genetic map of 100 centimorgans in length and selected levels of 9 (.50,.55,.60,.65,.70, and.75). FIGURE 3.-Given 100 loci equally spaced on a genetic map of 100 centimorgans in length and selected levels of q (.50,.55, 60,.65, and.70).

6 760 W. D. HANSON AND B. I. HAYMAN have a reference for discussion. Consider that a population of homozygous genotypes for an improved species is available and that the population is at gene equilibrium with respect to the homozygous conditions for loci. Let the frequency of the (+) and (-) homozygous condition by U, and ut, respectively. Then the possible combinations with respect to the ith locus for randomly selected pairs of parents would be: Frequency: U, u,u, UlUl U:: Parent I - - Parent I1 + + The relative genetic variance for homozygous progeny (R(n,q,s ) ) involves only those loci at which the two parents differ. For the single locus case, the probabilities that parent I is (+) and 11, (-) and parent I, (-) and 11, (+) are equal. Similarly, for those pairs of parents which differ at exactly n loci, average q can be shown to be and average d to be one. Hence, E[R(n,q,s )] = (1-2p)E[d] + 2p = 1 for a given n and s, and E[q] = s. That is to say, if the two parents are random selections from the population, R (n,q,s ) may increase or decrease with increasing m (number of generations of intermating), but for the average of all experiments R (n,q,s ) would equal its equilibrium value and not change with increasing m. Further, these points would apply to families of homozygous lines arising as selfed progeny from random individuals within a population. The information can be summarized as follows: Approximate proportion Change in R ( n,q,s ) Range for q of experiments with increasing m 0 to (1/2-1/2dG) 1 /6 Decreases (1/2-1/2+2) to (1/2+1/2+) 2/3 Increases (1/2+1/2+) to /6 Decreases Thus, or experiments based on pairs of random homozygous parents, it would be difficult to demonstrate changes in R (n,q,s ) except for a limited proportion of experiments considerably beyond the range (1/2* 1/2\/n) for q where R(n,q,s ) changes markedly with increasing m. (See Figures 1 to 3.) Parents selected for quantitative genetic studies in self-pollinated species are normally members of the improved set of genotypes for a species. Estimates for genetic parameters must reflect the population structure of improved genotypes to have meaning in a breeding program. Parents are not, however, random genotypes of this improved set but usually selected to represent differences. The criterion for selection of parents may be phenotypic differences, or perhaps more frequently, differences in the parental backgrounds. Therefore, parents used for quantitative genetic studies should be less similar than randomly selected parents from the improved set, and genetic variances decrease with intermating for an average of experiments. However, genetic variance estimates may increase or decrease with intermating for specific experiments. The range within which experi-

7 LINKAGE AND VARIANCE 761 ments might fall is speculative; however, extreme cases would not be expected since the parents are normally selected from the set of improved genotypes. Studies which involve an adapted genotype and a primitive (or exotic) genotype would involve values for q near one (or zero) and extreme linkage effects would be expected. The quantity (9) has been defined as the proportion of desirable loci found in one parent and may take values between zero or one. Minimum frequency of coupling phase linkages with reference to the parents occur for q = with a maximum frequency at one or zero. The frequency of coupling phase linkages is [n-1-2nq( 1-q)]/(n-I) so that q or (l-q) have equivalent effects with respect to the concept of coupling, or as evident from previous formulations, with respect to the interpretation of genetic variances. Assumptions. The assumptions made for this development will now be examined. Two restrictions were that the locus effects were equal and that the loci were equally spaced with respect to the genetic map scale. The failure of these two restrictions to be met in practice would affect primarily the sampling variability, and the formulation presented would tend to underestimate this source of variability. If the number of loci per chromosome map should be large, these two restrictions would be of little consequence. A third restriction assumed that, in the progenitor chromosome, nq favorable and n( 1-q) unfavorable loci were distributed at random among the n loci. Relation (5) is only correct when averaged over parental chromosome pairs containing all these permutations and is not necessarily correct for a particular pair of progenitor chromosomes. Relation (2), however, is correct for a particular arrangement of favorable and unfavorable genes because the manner in which the nb loci can be divided into ab1 favorable and nb2 unfavorable loci is not restricted there by the number of points of recombination, z. When z is restricted as in (3), (4), and (5), nbl has a random hypergeometric distribution only if the sampling is considered to be the average of samplings with restricted z from a population of progenitor chromosomes with nq favorable loci distributed at random. HANSON (1959) has shown that the number of points of recombination follows a Poisson distribution. This was based on the assumption that a point of recombination occurs independently with a uniform distribution in the genetic map scale. The assumption of independence could be reasonable, specifically when one interposes several generations of intermating. A tacit assumption has been that the relative genetic variance deduced in (5) for a single chromosome is applicable to a complete genotype. More correctly, if there are k chromosomes, the relative genetic variance is k k R=.Z z=l rn:(2q*--1)2(1--2pl)+ 2ntpz1/.Z z=l nc k k = I: n,r(n,,q,,s,)/z 72% i= 1 i=l which is a weighted average of the relative genetic variances of the separate

8 762 W. D. HANSON AND B. I. HAYMAN chromosomes. For example, the trend in R with m would be a weighted average of several of the graphs in Figures 1 to 3. It would even be possible for R to be constant with progressive intermating without all the (d,-1) being zero if some (d,-1 ) were positive and some negative. However, if the chromosomes are similar in size and effect, the previous discussion applies to a complete genotype. Finally, nonadditive variability was ignored, or considered to be negligible. The complexity of the problem forced this simplification, the argument being that at least a concept of linkage effects on the genetic variability could be developed. When dealing with the variability among homozygous lines, only the nonadditive variability arising from the interaction of additive scales would be present; however, even with this simplification, the evaluation is extremely complex. Experimental ramifications. The disturbing conclusion from this study is that genetic studies involving homozygous lines from homozygous parents yield results with restricted interpretation. The interesting facet from a theoretical point of view is that different combinations of the extent of coupling phases in the original parents and the number of loci per genetic map produce similar modifications of genetic variances. Figures 1 to 3 were based on a map length of 100 centimorgans with loci at ten, two, and one intervals, respectively. From these figures and from the previous discussion on average R(n,q,s ) and q one would expect that for typical experiments the genetic variance among lines should decrease with intermating. A summarization of quantitative genetic information available from crosses between two homozygous parents is of interest: (i) The expected value for the genotypes with a given number of recombinations (as noted in (4) and by other workers) is zero and thus independent of the number of generations of intermating. Therefore, population means will not change with intermating unless there exist nonadditive effects associated with the change in linkage disequilibrium. (ii) Although genetic variability can be grossly inflated as compared to that expected for linkage equilibrium, the genetic variances reflect the potential progress a breeder could expect from selection among the homozygous progeny. The variances could be misleading for predicting the progress in the intercrossed progeny from these selected lines. (iii) The detection of changes in genetic variances with interposed generations of intermating established linkage between loci affecting a character; however, the failure to detect changes in genetic variance does not rule out the presence of linked loci. On the other hand, similar estimates for imposed generations of intermating would indicate estimates near the equilibrium value. (iv) Estimates of genetic variances available from crosses between pairs of homozygous parents of a species could yield a realistic characterization of the genetic variability for a population. The critical point would be whether one could assume that the crosses involved pairs of random parents, a condition which may not be met. The average for experiments could lead to an overestimation of equilibrium variances; however, this point is speculative. A potential danger exists when genetic variances estimated from cross between two homozygous parents are used to describe the dynamics of a population, which is the key to plant breeding.

9 LINKAGE AND VARIANCE 763 The ultimate goal in plant breeding programs is achieved only through the manipulation of populations. A program in self-pollinated crops does not differ from other crops in this respect but does introduce the limitation of an essentially closed system with respect to genetic recombinations. Genetic recombinations within selected sets are obtained by forced intermating. Descriptive effects of intermating with respect to lengths of linkage blocks are available (HANSON 1959). Intermating prior to selection would probably decrease genetic variability and thus immediate genetic progress. A distinction must be made between immediate gains from selection and real gains within a population. The approach to the idealized genotype will be achieved only through some recurrent selection program which permits recombination to occur under selection pressure. Whether a plant breeder wishes to intermate a generation or two before selfing and selecting as previously suggested by the author involves an evaluation of the material and of economics and time. Opportunity for recombination with segments of a population is essential to achieve the ultimate goal of plant breeding. Attention in this paper was directed towards quantitative genetic studies in self-pollinated crops where the lines arose from two homozygous parents. Studies which involved homozygous parents or two populations such as a Latin American corn variety and a corn belt variety, for example, have many problems in common with those discussed in this paper. SUMMARY The additive genetic variance among homozygous lines arising from a cross between two homozygous parents was related to their average recombination. The procedure was generalized to include intermating after the F, generation. To evaluate required certain simplifications. The characterization of changes in the genetic variances with intermating involved proportions of coupling-phase linkages (determined by q) in the original parents, and the number n of loci per genetic map of a chromosome which have interrelated effects. Genetic variances may be less than or considerably greater than that expected for linkage equilibrium according as n (2q- 1 ) is less than or greater than unity, but will always move towards the equilibrium value with intermating. When n (2q-I ) * is unity, the variances do not change with intermating. The unit for the variability analysis was the chromosome. The extension to total genotypic variability involved the summation for k pairs of homologous chromosomes. Changes in genetic variability with intermating established linkage effects; however, the converse would not be true. The average additive genetic variance for experiments which involved random pairs of homozygous parents would estimate the variance for equilibrium condition and not change with intermating. Unless one dealt with a cross between two extreme parents, it would be extremely difficult to establish changes in genetic variability with intermating. APPENDIX The expected recombination can be specified exactly in terms of n and z or of

10 764 W. D. HANSON AND B. I. HAYMAN n and s'. The derivation here parallels HANSON'S (1962) approximate derivation and assumes without restatement the same basic situation. Any homozygous individual arising from a cross has alternate homozygous segments of the two progenitor chromosome types. The numbers of loci in the two sets of alternate segments are nb and nc. Take expectations of (1) over all nb generated by a given number of recombinations x: The variance of nb determines the recombination value and its derivation is the main problem of this appendix. Consider the set of homologous homozygotes containing x points of genetic recombination within n = nb+nc loci. If these x are distributed at random, the frequency pattern of recombinations is generated by where N = n-1 and summation is over all a, such that a,+a,+a3+... E x. The coefficient of tlait2aatja3... is the chance that a, points of recombination lie between loci 1 and 2, u2 between loci 2 and 3, and so on. Let y be the number of loci in the same progenitor set as the first locus. Then locus if1 is in this set if the number of recombinations between it and the first locus is even and is in the other progenitor set if this number of recombinations is odd. This means that locus i+l contributes. [l + (-l)ql+",+...a%]/2 to the total y of loci. Hence, N y= 1 + z [l + (-1)%+%+...+5]/2. 2=1 Progenitor sets of loci which do not include the first locus contain N+l-y loci, and E(nb 1 N,x) =Ey/2 + E(N+l-y)/2 = (N+1)/2, as in (3). var(nb 1 N,s) =E[nb-(N+1)J2]2 = E[y- (N+ 1 )/e]* =E[1 (-l)"~~(-l)ui+a~~(-l)a~+a~+a~+..]'/4 = E[1 2(-1)%+2(-1)a*+a2+2(-1)a1+%+~, (-1)az +2(-1)%+a, (-1)" ]/4.

11 LINKAGE AND VARIANCE 765 Now E(-l)'~'ul'.. is obtained by placing t, = ti =.. = -1 and tk = 1 for k # i, j,.. in G(tl,t2,... tn). If there are r loci involved in the exponent, then E(-l)%'", " = N"(N-r-r)" (1-2r/N)", and this is independent of the particular loci involved. Hence, where var(n, I N,z) = [ Nfl + 2N(l-2/N)" + 2(N-l) (1-4/N)" f...1/4 N = (N4-1-r) (1-2r/N)"/2 - (N+1)/4 r=0 [Nh(N,x+l) + (N+2)h(NYz)- (N+1)]/4, N h(n,z) = X (l--er/n)x. r=0 Then from (7) with n = Nfl, p(n,z) = [(N+1) (Nf2)- Nh(N,z+l) - (N+2) h( N,x) ]/2N( N+ 1 ). (8) Note that h(n,2x+l) = 0 so that there are virtually two different formulas for p(n,z), one for even x and one for odd z. HANSON (1959) has shown that after m generations of intermating, z has a Poisson distribution with mean s' = s (nf4)/2 where s is the genetic map length of the chromosome. The average recombination for this distribution of x is m p (Np' ) = x p ( N,z) e-s's'x/x! x=o N = % - x (N+1-r)e-2~8'/y/N(N+I) (9) r=1 (N+1) (N+2)+ N(N+l)e4*'/H- 2N(N+2)e*s'/N- 2cz5' - 2N(N+1) (10) [ezs'/x- 112 Some alternative formulas are useful for computation. In the case of h(n,z) use the definitive N h(n,z) = r. (1-2r/N)" r=o for all x when N is small. Use -1) (N/2)--2c+l for all N when x is small and even. B, are the Bernoulli numbers, B, = 1/6, B, = 1/30, etc. An approximation which is correct for N = 1, 2,00, for z = 0, 2, CO, and for x = 0.8N = CO is (N-1) (N-2) h(n,z) =2 + (N+x-2) (z+l) Substitution of these formulas for h(n,z) in (8) gives formulas for p(n,z). In the approximate case these reduce to 1 1 (N-1) (N-2) (N+2),u(N,x) = -- -, for even x, 2 N(N+l) 2N(N+1) (Nfz-2) (zfl) = (N-I) (N-2), for odd x. 2 N(Nf1) 2(N+1) (N+x-1) (zf2)

12 766 W. D. HANSON AND B. I. HAYMAN These are correct at the boundary values of N and x and otherwise have errors of up to 3 percent. The asymptotic behavior of p (N,s') is given by the following approximations: For large N p(n,s') = ( 1-2s'+2s'~-e-~~')/4~'L-(3-l8s'2~8s'7-3e-"'-6s'e-?Y')/l2s'~~. (11) For large s' p(n,s')= 1/2 - e-2s'/"/(nfl). (12) LITERATURE CITED COMSTOCK, R. E., and H. F. ROBINSON, 1952 Estimation of average dominance of genes. Chapter 30. Heterosis. Edited by J. W. GOTEN. Iowa State 'College Press. Ames, Iowa. GATES, C. E., R. E. COMSTOCK, and H. F. ROBINSON, 1957 Generalized genetic variance and covariance formulae for self-fertilized crops assuming linkage. Genetics 42 : GRIFFING, G., : Accommodation of linkage in mass selection theory. Austral. J. Biol. Sci. HANSON, W. D., 1959 The breakup of initial linkage blocks under selected mating systems. Genetics 44: Resolution of genetic variability in self-pollinated species with an application to the soybean. Genetics 46: Average recombination per chromosome. Genetics 47: M7415. MATHER, K., 1949 Biometrical Genetics. Dover Publications, Inc. London. SCHNELL, F. W., 1961 Some general formulations of linkage effects in inbreeding. Genetics 46: The covariance between relatives in the presence of linkage. pp Stutisticul Genetics and Plant Breeding. Edited by W. D. HANSON and H. F. ROBINSON. Humphrey, New York.

STAT 536: Genetic Statistics

STAT 536: Genetic Statistics STAT 536: Genetic Statistics Frequency Estimation Karin S. Dorman Department of Statistics Iowa State University August 28, 2006 Fundamental rules of genetics Law of Segregation a diploid parent is equally

More information

the experiment; and the distribution of residuals (or non-heritable

the experiment; and the distribution of residuals (or non-heritable SOME GENOTYPIC FREQUENCIES AND VARIANCE COMPONENTS OCCURRING IN BIOMETRICAL GENETICS J. A. NELDER National Vegetable Research Station, Wellesbourne, Warwicks. Received 30.xi.5 i 1. INTRODUCTION MATHER

More information

EXERCISES FOR CHAPTER 7. Exercise 7.1. Derive the two scales of relation for each of the two following recurrent series:

EXERCISES FOR CHAPTER 7. Exercise 7.1. Derive the two scales of relation for each of the two following recurrent series: Statistical Genetics Agronomy 65 W. E. Nyquist March 004 EXERCISES FOR CHAPTER 7 Exercise 7.. Derive the two scales of relation for each of the two following recurrent series: u: 0, 8, 6, 48, 46,L 36 7

More information

to be tested with great accuracy. The contrast between this state

to be tested with great accuracy. The contrast between this state STATISTICAL MODELS IN BIOMETRICAL GENETICS J. A. NELDER National Vegetable Research Station, Wellesbourne, Warwick Received I.X.52 I. INTRODUCTION THE statistical models belonging to the analysis of discontinuous

More information

19. Genetic Drift. The biological context. There are four basic consequences of genetic drift:

19. Genetic Drift. The biological context. There are four basic consequences of genetic drift: 9. Genetic Drift Genetic drift is the alteration of gene frequencies due to sampling variation from one generation to the next. It operates to some degree in all finite populations, but can be significant

More information

Common Mating Designs in Agricultural Research and Their Reliability in Estimation of Genetic Parameters

Common Mating Designs in Agricultural Research and Their Reliability in Estimation of Genetic Parameters IOSR Journal of Agriculture and Veterinary Science (IOSR-JAVS) e-issn: 2319-2380, p-issn: 2319-2372. Volume 11, Issue 7 Ver. II (July 2018), PP 16-36 www.iosrjournals.org Common Mating Designs in Agricultural

More information

Lecture 9. Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Synbreed course version 3 July 2013

Lecture 9. Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Synbreed course version 3 July 2013 Lecture 9 Short-Term Selection Response: Breeder s equation Bruce Walsh lecture notes Synbreed course version 3 July 2013 1 Response to Selection Selection can change the distribution of phenotypes, and

More information

Chapter 6 Linkage Disequilibrium & Gene Mapping (Recombination)

Chapter 6 Linkage Disequilibrium & Gene Mapping (Recombination) 12/5/14 Chapter 6 Linkage Disequilibrium & Gene Mapping (Recombination) Linkage Disequilibrium Genealogical Interpretation of LD Association Mapping 1 Linkage and Recombination v linkage equilibrium ²

More information

A New Metric for Parental Selection in Plant Breeding

A New Metric for Parental Selection in Plant Breeding Graduate Theses and Dissertations Graduate College 2014 A New Metric for Parental Selection in Plant Breeding Ye Han Iowa State University Follow this and additional works at: http://libdriastateedu/etd

More information

EXERCISES FOR CHAPTER 3. Exercise 3.2. Why is the random mating theorem so important?

EXERCISES FOR CHAPTER 3. Exercise 3.2. Why is the random mating theorem so important? Statistical Genetics Agronomy 65 W. E. Nyquist March 004 EXERCISES FOR CHAPTER 3 Exercise 3.. a. Define random mating. b. Discuss what random mating as defined in (a) above means in a single infinite population

More information

Quantitative Genetics I: Traits controlled my many loci. Quantitative Genetics: Traits controlled my many loci

Quantitative Genetics I: Traits controlled my many loci. Quantitative Genetics: Traits controlled my many loci Quantitative Genetics: Traits controlled my many loci So far in our discussions, we have focused on understanding how selection works on a small number of loci (1 or 2). However in many cases, evolutionary

More information

Lecture 1 Hardy-Weinberg equilibrium and key forces affecting gene frequency

Lecture 1 Hardy-Weinberg equilibrium and key forces affecting gene frequency Lecture 1 Hardy-Weinberg equilibrium and key forces affecting gene frequency Bruce Walsh lecture notes Introduction to Quantitative Genetics SISG, Seattle 16 18 July 2018 1 Outline Genetics of complex

More information

Eiji Yamamoto 1,2, Hiroyoshi Iwata 3, Takanari Tanabata 4, Ritsuko Mizobuchi 1, Jun-ichi Yonemaru 1,ToshioYamamoto 1* and Masahiro Yano 5,6

Eiji Yamamoto 1,2, Hiroyoshi Iwata 3, Takanari Tanabata 4, Ritsuko Mizobuchi 1, Jun-ichi Yonemaru 1,ToshioYamamoto 1* and Masahiro Yano 5,6 Yamamoto et al. BMC Genetics 2014, 15:50 METHODOLOGY ARTICLE Open Access Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent

More information

QUANTITATIVE ANALYSIS OF PHOTOPERIODISM OF TEXAS 86, GOSSYPIUM HIRSUTUM RACE LATIFOLIUM, IN A CROSS AMERICAN UPLAND COTTON' Received June 21, 1962

QUANTITATIVE ANALYSIS OF PHOTOPERIODISM OF TEXAS 86, GOSSYPIUM HIRSUTUM RACE LATIFOLIUM, IN A CROSS AMERICAN UPLAND COTTON' Received June 21, 1962 THE GENETICS OF FLOWERING RESPONSE IN COTTON. IV. QUANTITATIVE ANALYSIS OF PHOTOPERIODISM OF TEXAS 86, GOSSYPIUM HIRSUTUM RACE LATIFOLIUM, IN A CROSS WITH AN INBRED LINE OF CULTIVATED AMERICAN UPLAND COTTON'

More information

Genetics (patterns of inheritance)

Genetics (patterns of inheritance) MENDELIAN GENETICS branch of biology that studies how genetic characteristics are inherited MENDELIAN GENETICS Gregory Mendel, an Augustinian monk (1822-1884), was the first who systematically studied

More information

Chapter 13 Meiosis and Sexual Reproduction

Chapter 13 Meiosis and Sexual Reproduction Biology 110 Sec. 11 J. Greg Doheny Chapter 13 Meiosis and Sexual Reproduction Quiz Questions: 1. What word do you use to describe a chromosome or gene allele that we inherit from our Mother? From our Father?

More information

Breeding strategy for improvement of flower and seed yields in safflower

Breeding strategy for improvement of flower and seed yields in safflower Breeding strategy for improvement of flower and seed yields in safflower Vrijendra Singh, N. M. Kolekar and N. Nimbkar Nimbkar Agricultural Research Institute, Lonand Road, Phaltan 415523, Maharashtra,

More information

Solutions to Even-Numbered Exercises to accompany An Introduction to Population Genetics: Theory and Applications Rasmus Nielsen Montgomery Slatkin

Solutions to Even-Numbered Exercises to accompany An Introduction to Population Genetics: Theory and Applications Rasmus Nielsen Montgomery Slatkin Solutions to Even-Numbered Exercises to accompany An Introduction to Population Genetics: Theory and Applications Rasmus Nielsen Montgomery Slatkin CHAPTER 1 1.2 The expected homozygosity, given allele

More information

Managing segregating populations

Managing segregating populations Managing segregating populations Aim of the module At the end of the module, we should be able to: Apply the general principles of managing segregating populations generated from parental crossing; Describe

More information

Essential Questions. Meiosis. Copyright McGraw-Hill Education

Essential Questions. Meiosis. Copyright McGraw-Hill Education Essential Questions How does the reduction in chromosome number occur during meiosis? What are the stages of meiosis? What is the importance of meiosis in providing genetic variation? Meiosis Vocabulary

More information

Natural Selection. Population Dynamics. The Origins of Genetic Variation. The Origins of Genetic Variation. Intergenerational Mutation Rate

Natural Selection. Population Dynamics. The Origins of Genetic Variation. The Origins of Genetic Variation. Intergenerational Mutation Rate Natural Selection Population Dynamics Humans, Sickle-cell Disease, and Malaria How does a population of humans become resistant to malaria? Overproduction Environmental pressure/competition Pre-existing

More information

PRINCIPLES OF MENDELIAN GENETICS APPLICABLE IN FORESTRY. by Erich Steiner 1/

PRINCIPLES OF MENDELIAN GENETICS APPLICABLE IN FORESTRY. by Erich Steiner 1/ PRINCIPLES OF MENDELIAN GENETICS APPLICABLE IN FORESTRY by Erich Steiner 1/ It is well known that the variation exhibited by living things has two components, one hereditary, the other environmental. One

More information

Life Cycles, Meiosis and Genetic Variability24/02/2015 2:26 PM

Life Cycles, Meiosis and Genetic Variability24/02/2015 2:26 PM Life Cycles, Meiosis and Genetic Variability iclicker: 1. A chromosome just before mitosis contains two double stranded DNA molecules. 2. This replicated chromosome contains DNA from only one of your parents

More information

Lecture 2. Basic Population and Quantitative Genetics

Lecture 2. Basic Population and Quantitative Genetics Lecture Basic Population and Quantitative Genetics Bruce Walsh. Aug 003. Nordic Summer Course Allele and Genotype Frequencies The frequency p i for allele A i is just the frequency of A i A i homozygotes

More information

Solutions to Problem Set 4

Solutions to Problem Set 4 Question 1 Solutions to 7.014 Problem Set 4 Because you have not read much scientific literature, you decide to study the genetics of garden peas. You have two pure breeding pea strains. One that is tall

More information

Lecture 9. QTL Mapping 2: Outbred Populations

Lecture 9. QTL Mapping 2: Outbred Populations Lecture 9 QTL Mapping 2: Outbred Populations Bruce Walsh. Aug 2004. Royal Veterinary and Agricultural University, Denmark The major difference between QTL analysis using inbred-line crosses vs. outbred

More information

Name Class Date. KEY CONCEPT Gametes have half the number of chromosomes that body cells have.

Name Class Date. KEY CONCEPT Gametes have half the number of chromosomes that body cells have. Section 1: Chromosomes and Meiosis KEY CONCEPT Gametes have half the number of chromosomes that body cells have. VOCABULARY somatic cell autosome fertilization gamete sex chromosome diploid homologous

More information

Evolutionary quantitative genetics and one-locus population genetics

Evolutionary quantitative genetics and one-locus population genetics Evolutionary quantitative genetics and one-locus population genetics READING: Hedrick pp. 57 63, 587 596 Most evolutionary problems involve questions about phenotypic means Goal: determine how selection

More information

Meiosis -> Inheritance. How do the events of Meiosis predict patterns of heritable variation?

Meiosis -> Inheritance. How do the events of Meiosis predict patterns of heritable variation? Meiosis -> Inheritance How do the events of Meiosis predict patterns of heritable variation? Mendel s peas 1. Genes determine appearance (phenotype) 2. Genes vary and they are inherited 3. Their behavior

More information

Ch 11.Introduction to Genetics.Biology.Landis

Ch 11.Introduction to Genetics.Biology.Landis Nom Section 11 1 The Work of Gregor Mendel (pages 263 266) This section describes how Gregor Mendel studied the inheritance of traits in garden peas and what his conclusions were. Introduction (page 263)

More information

Inbreeding depression due to stabilizing selection on a quantitative character. Emmanuelle Porcher & Russell Lande

Inbreeding depression due to stabilizing selection on a quantitative character. Emmanuelle Porcher & Russell Lande Inbreeding depression due to stabilizing selection on a quantitative character Emmanuelle Porcher & Russell Lande Inbreeding depression Reduction in fitness of inbred vs. outbred individuals Outcrossed

More information

MIXED MODELS THE GENERAL MIXED MODEL

MIXED MODELS THE GENERAL MIXED MODEL MIXED MODELS This chapter introduces best linear unbiased prediction (BLUP), a general method for predicting random effects, while Chapter 27 is concerned with the estimation of variances by restricted

More information

LECTURE # How does one test whether a population is in the HW equilibrium? (i) try the following example: Genotype Observed AA 50 Aa 0 aa 50

LECTURE # How does one test whether a population is in the HW equilibrium? (i) try the following example: Genotype Observed AA 50 Aa 0 aa 50 LECTURE #10 A. The Hardy-Weinberg Equilibrium 1. From the definitions of p and q, and of p 2, 2pq, and q 2, an equilibrium is indicated (p + q) 2 = p 2 + 2pq + q 2 : if p and q remain constant, and if

More information

Design Parameters Design Parameters... lo. CONTENTS 1 Page TABLE OF. ... ii ACKNOWLEDGMENTS. Chapter I. INTRODUCTION...

Design Parameters Design Parameters... lo. CONTENTS 1 Page TABLE OF. ... ii ACKNOWLEDGMENTS. Chapter I. INTRODUCTION... S s J l _» TABLE F CNTENTS 1 Page ACKNWLEDMENTS... ii Chapter. NTRDUCTN... l. MDELN THE SELECTN EXPERMENT... 6 2.1 ntroduction... 6 2.2 Description of the Selection Experiment... 6 2.3 Development of the

More information

CALCULATING LINKAGE INTENSITIES FROM Fa DATA* Received April 10, 1933

CALCULATING LINKAGE INTENSITIES FROM Fa DATA* Received April 10, 1933 CALCULATING LINKAGE INTENSITIES FROM Fa DATA* F. R. IMMER' Ofice of Sugar Plant Investigations, Bureau of Plant Industry, U. S. De#artment of Agriculture, University Farm, St. Paul, Minnesota Received

More information

Partitioning of General and Specific Combining Ability Effects for Estimating Maternal and Reciprocal Effects

Partitioning of General and Specific Combining Ability Effects for Estimating Maternal and Reciprocal Effects Partitioning of General and Specific Combining Ability Effects for Estimating Maternal and Reciprocal Effects Galal M. A. Mahgoub Maize Research Department, Field Crops Research Institute. Agricultural

More information

Form for publishing your article on BiotechArticles.com this document to

Form for publishing your article on BiotechArticles.com  this document to PRODUCTION OF SYNTHETIC VARIETIES Madhu Choudhary*, Kana Ram Kumawat, Ravi Kumawat and Mamta Bajya Department of Plant Breeding and Genetics, S.K.N. Agriculture University, Jobner-303329, Jaipur (Rajasthan),

More information

The Wright-Fisher Model and Genetic Drift

The Wright-Fisher Model and Genetic Drift The Wright-Fisher Model and Genetic Drift January 22, 2015 1 1 Hardy-Weinberg Equilibrium Our goal is to understand the dynamics of allele and genotype frequencies in an infinite, randomlymating population

More information

Comparison of half-sib and full-sib reciprocal recurrent selection and their modifications in simulated populations

Comparison of half-sib and full-sib reciprocal recurrent selection and their modifications in simulated populations Retrospective Theses and Dissertations 2001 Comparison of half-sib and full-sib reciprocal recurrent selection and their modifications in simulated populations Baminihennadege Laknath Peiris Iowa State

More information

The phenotype of this worm is wild type. When both genes are mutant: The phenotype of this worm is double mutant Dpy and Unc phenotype.

The phenotype of this worm is wild type. When both genes are mutant: The phenotype of this worm is double mutant Dpy and Unc phenotype. Series 1: Cross Diagrams There are two alleles for each trait in a diploid organism In C. elegans gene symbols are ALWAYS italicized. To represent two different genes on the same chromosome: When both

More information

Evolutionary Theory. Sinauer Associates, Inc. Publishers Sunderland, Massachusetts U.S.A.

Evolutionary Theory. Sinauer Associates, Inc. Publishers Sunderland, Massachusetts U.S.A. Evolutionary Theory Mathematical and Conceptual Foundations Sean H. Rice Sinauer Associates, Inc. Publishers Sunderland, Massachusetts U.S.A. Contents Preface ix Introduction 1 CHAPTER 1 Selection on One

More information

A. Correct! Genetically a female is XX, and has 22 pairs of autosomes.

A. Correct! Genetically a female is XX, and has 22 pairs of autosomes. MCAT Biology - Problem Drill 08: Meiosis and Genetic Variability Question No. 1 of 10 1. A human female has pairs of autosomes and her sex chromosomes are. Question #01 (A) 22, XX. (B) 23, X. (C) 23, XX.

More information

CHAPTER 23 THE EVOLUTIONS OF POPULATIONS. Section C: Genetic Variation, the Substrate for Natural Selection

CHAPTER 23 THE EVOLUTIONS OF POPULATIONS. Section C: Genetic Variation, the Substrate for Natural Selection CHAPTER 23 THE EVOLUTIONS OF POPULATIONS Section C: Genetic Variation, the Substrate for Natural Selection 1. Genetic variation occurs within and between populations 2. Mutation and sexual recombination

More information

Chapter 2: Extensions to Mendel: Complexities in Relating Genotype to Phenotype.

Chapter 2: Extensions to Mendel: Complexities in Relating Genotype to Phenotype. Chapter 2: Extensions to Mendel: Complexities in Relating Genotype to Phenotype. please read pages 38-47; 49-55;57-63. Slide 1 of Chapter 2 1 Extension sot Mendelian Behavior of Genes Single gene inheritance

More information

Family resemblance can be striking!

Family resemblance can be striking! Family resemblance can be striking! 1 Chapter 14. Mendel & Genetics 2 Gregor Mendel! Modern genetics began in mid-1800s in an abbey garden, where a monk named Gregor Mendel documented inheritance in peas

More information

Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Uppsala EQG course version 31 Jan 2012

Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Uppsala EQG course version 31 Jan 2012 Short-Term Selection Response: Breeder s equation Bruce Walsh lecture notes Uppsala EQG course version 31 Jan 2012 Response to Selection Selection can change the distribution of phenotypes, and we typically

More information

Breeding Values and Inbreeding. Breeding Values and Inbreeding

Breeding Values and Inbreeding. Breeding Values and Inbreeding Breeding Values and Inbreeding Genotypic Values For the bi-allelic single locus case, we previously defined the mean genotypic (or equivalently the mean phenotypic values) to be a if genotype is A 2 A

More information

Chapter 10 Sexual Reproduction and Genetics

Chapter 10 Sexual Reproduction and Genetics Sexual Reproduction and Genetics Section 1: Meiosis Section 2: Mendelian Genetics Section 3: Gene Linkage and Polyploidy Click on a lesson name to select. Chromosomes and Chromosome Number! Human body

More information

Statistical Genetics I: STAT/BIOST 550 Spring Quarter, 2014

Statistical Genetics I: STAT/BIOST 550 Spring Quarter, 2014 Overview - 1 Statistical Genetics I: STAT/BIOST 550 Spring Quarter, 2014 Elizabeth Thompson University of Washington Seattle, WA, USA MWF 8:30-9:20; THO 211 Web page: www.stat.washington.edu/ thompson/stat550/

More information

UNIT 8 BIOLOGY: Meiosis and Heredity Page 148

UNIT 8 BIOLOGY: Meiosis and Heredity Page 148 UNIT 8 BIOLOGY: Meiosis and Heredity Page 148 CP: CHAPTER 6, Sections 1-6; CHAPTER 7, Sections 1-4; HN: CHAPTER 11, Section 1-5 Standard B-4: The student will demonstrate an understanding of the molecular

More information

COMBINING ABILITY ANALYSIS FOR CURED LEAF YIELD AND ITS COMPONENT TRAITS IN BIDI TOBACCO (NicotianatabacumL.)

COMBINING ABILITY ANALYSIS FOR CURED LEAF YIELD AND ITS COMPONENT TRAITS IN BIDI TOBACCO (NicotianatabacumL.) International Journal of Science, Environment and Technology, Vol. 5, No 3, 2016, 1373 1380 ISSN 2278-3687 (O) 2277-663X (P) COMBINING ABILITY ANALYSIS FOR CURED LEAF YIELD AND ITS COMPONENT TRAITS IN

More information

Population Genetics. with implications for Linkage Disequilibrium. Chiara Sabatti, Human Genetics 6357a Gonda

Population Genetics. with implications for Linkage Disequilibrium. Chiara Sabatti, Human Genetics 6357a Gonda 1 Population Genetics with implications for Linkage Disequilibrium Chiara Sabatti, Human Genetics 6357a Gonda csabatti@mednet.ucla.edu 2 Hardy-Weinberg Hypotheses: infinite populations; no inbreeding;

More information

Chapter 1: Mendel s breakthrough: patterns, particles and principles of heredity

Chapter 1: Mendel s breakthrough: patterns, particles and principles of heredity Chapter 1: Mendel s breakthrough: patterns, particles and principles of heredity please read pages 10 through 13 Slide 1 of Chapter 1 One of Mendel s express aims was to understand how first generation

More information

Lecture 3. Introduction on Quantitative Genetics: I. Fisher s Variance Decomposition

Lecture 3. Introduction on Quantitative Genetics: I. Fisher s Variance Decomposition Lecture 3 Introduction on Quantitative Genetics: I Fisher s Variance Decomposition Bruce Walsh. Aug 004. Royal Veterinary and Agricultural University, Denmark Contribution of a Locus to the Phenotypic

More information

I. GREGOR MENDEL - father of heredity

I. GREGOR MENDEL - father of heredity GENETICS: Mendel Background: Students know that Meiosis produces 4 haploid sex cells that are not identical, allowing for genetic variation. Essential Question: What are two characteristics about Mendel's

More information

Lecture 8. QTL Mapping 1: Overview and Using Inbred Lines

Lecture 8. QTL Mapping 1: Overview and Using Inbred Lines Lecture 8 QTL Mapping 1: Overview and Using Inbred Lines Bruce Walsh. jbwalsh@u.arizona.edu. University of Arizona. Notes from a short course taught Jan-Feb 2012 at University of Uppsala While the machinery

More information

Prediction of the Confidence Interval of Quantitative Trait Loci Location

Prediction of the Confidence Interval of Quantitative Trait Loci Location Behavior Genetics, Vol. 34, No. 4, July 2004 ( 2004) Prediction of the Confidence Interval of Quantitative Trait Loci Location Peter M. Visscher 1,3 and Mike E. Goddard 2 Received 4 Sept. 2003 Final 28

More information

1 Springer. Nan M. Laird Christoph Lange. The Fundamentals of Modern Statistical Genetics

1 Springer. Nan M. Laird Christoph Lange. The Fundamentals of Modern Statistical Genetics 1 Springer Nan M. Laird Christoph Lange The Fundamentals of Modern Statistical Genetics 1 Introduction to Statistical Genetics and Background in Molecular Genetics 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

More information

Q1) Explain how background selection and genetic hitchhiking could explain the positive correlation between genetic diversity and recombination rate.

Q1) Explain how background selection and genetic hitchhiking could explain the positive correlation between genetic diversity and recombination rate. OEB 242 Exam Practice Problems Answer Key Q1) Explain how background selection and genetic hitchhiking could explain the positive correlation between genetic diversity and recombination rate. First, recall

More information

Selection Page 1 sur 11. Atlas of Genetics and Cytogenetics in Oncology and Haematology SELECTION

Selection Page 1 sur 11. Atlas of Genetics and Cytogenetics in Oncology and Haematology SELECTION Selection Page 1 sur 11 Atlas of Genetics and Cytogenetics in Oncology and Haematology SELECTION * I- Introduction II- Modeling and selective values III- Basic model IV- Equation of the recurrence of allele

More information

The phenotype of this worm is wild type. When both genes are mutant: The phenotype of this worm is double mutant Dpy and Unc phenotype.

The phenotype of this worm is wild type. When both genes are mutant: The phenotype of this worm is double mutant Dpy and Unc phenotype. Series 2: Cross Diagrams - Complementation There are two alleles for each trait in a diploid organism In C. elegans gene symbols are ALWAYS italicized. To represent two different genes on the same chromosome:

More information

Reinforcement Unit 3 Resource Book. Meiosis and Mendel KEY CONCEPT Gametes have half the number of chromosomes that body cells have.

Reinforcement Unit 3 Resource Book. Meiosis and Mendel KEY CONCEPT Gametes have half the number of chromosomes that body cells have. 6.1 CHROMOSOMES AND MEIOSIS KEY CONCEPT Gametes have half the number of chromosomes that body cells have. Your body is made of two basic cell types. One basic type are somatic cells, also called body cells,

More information

Linkage and Chromosome Mapping

Linkage and Chromosome Mapping Linkage and Chromosome Mapping I. 1 st year, 2 nd semester, week 11 2008 Aleš Panczak, ÚBLG 1. LF a VFN Terminology, definitions The term recombination ratio (fraction), Θ (Greek letter theta), is used

More information

History, Contribution, and Future of Quantitative Genetics in Plant Breeding: Lessons From Maize

History, Contribution, and Future of Quantitative Genetics in Plant Breeding: Lessons From Maize ARNEL R. HALLAUER* History, Contribution, and Future of Quantitative Genetics in Plant Breeding: Lessons From Maize C. F. Curtiss Distinguished Professor in Agriculture, Emeritus. Dep. of Agronomy, Iowa

More information

Dropping Your Genes. A Simulation of Meiosis and Fertilization and An Introduction to Probability

Dropping Your Genes. A Simulation of Meiosis and Fertilization and An Introduction to Probability Dropping Your Genes A Simulation of Meiosis and Fertilization and An Introduction to To fully understand Mendelian genetics (and, eventually, population genetics), you need to understand certain aspects

More information

Genetics_2011.notebook. May 13, Aim: What is heredity? Homework. Rd pp p.270 # 2,3,4. Feb 8 11:46 PM. Mar 25 1:15 PM.

Genetics_2011.notebook. May 13, Aim: What is heredity? Homework. Rd pp p.270 # 2,3,4. Feb 8 11:46 PM. Mar 25 1:15 PM. Aim: What is heredity? LE1 3/25/11 Do Now: 1.Make a T Chart comparing and contrasting mitosis & meiosis. 2. Have your lab out to be collected Homework for Tuesday 3/29 Read pp. 267 270 p.270 # 1,3 Vocabulary:

More information

Linkage Mapping. Reading: Mather K (1951) The measurement of linkage in heredity. 2nd Ed. John Wiley and Sons, New York. Chapters 5 and 6.

Linkage Mapping. Reading: Mather K (1951) The measurement of linkage in heredity. 2nd Ed. John Wiley and Sons, New York. Chapters 5 and 6. Linkage Mapping Reading: Mather K (1951) The measurement of linkage in heredity. 2nd Ed. John Wiley and Sons, New York. Chapters 5 and 6. Genetic maps The relative positions of genes on a chromosome can

More information

Population Genetics & Evolution

Population Genetics & Evolution The Theory of Evolution Mechanisms of Evolution Notes Pt. 4 Population Genetics & Evolution IMPORTANT TO REMEMBER: Populations, not individuals, evolve. Population = a group of individuals of the same

More information

Chapter 7 The Genetic Model for Quantitative Traits

Chapter 7 The Genetic Model for Quantitative Traits Chapter 7 The Genetic Model for Quantitative Traits I. The Basic Model II. Breeding Value III. Gene Combination Value IV. Producing Ability Chapter 7 The Genetic Model for Quantitative Traits Learning

More information

Heredity and Genetics WKSH

Heredity and Genetics WKSH Chapter 6, Section 3 Heredity and Genetics WKSH KEY CONCEPT Mendel s research showed that traits are inherited as discrete units. Vocabulary trait purebred law of segregation genetics cross MAIN IDEA:

More information

CSS 350 Midterm #2, 4/2/01

CSS 350 Midterm #2, 4/2/01 6. In corn three unlinked dominant genes are necessary for aleurone color. The genotypes B-D-B- are colored. If any of these loci is homozygous recessive the aleurone will be colorless. What is the expected

More information

A consideration of the chi-square test of Hardy-Weinberg equilibrium in a non-multinomial situation

A consideration of the chi-square test of Hardy-Weinberg equilibrium in a non-multinomial situation Ann. Hum. Genet., Lond. (1975), 39, 141 Printed in Great Britain 141 A consideration of the chi-square test of Hardy-Weinberg equilibrium in a non-multinomial situation BY CHARLES F. SING AND EDWARD D.

More information

Prediction and Validation of Three Cross Hybrids in Maize (Zea mays L.)

Prediction and Validation of Three Cross Hybrids in Maize (Zea mays L.) International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 7 Number 01 (2018) Journal homepage: http://www.ijcmas.com Original Research Article https://doi.org/10.20546/ijcmas.2018.701.183

More information

The history of Life on Earth reflects an unbroken chain of genetic continuity and transmission of genetic information:

The history of Life on Earth reflects an unbroken chain of genetic continuity and transmission of genetic information: 9/26/05 Biology 321 Answers to optional challenge probability questions posed in 9/23/05lecture notes are included at the end of these lecture notes The history of Life on Earth reflects an unbroken chain

More information

Interest Grabber. Analyzing Inheritance

Interest Grabber. Analyzing Inheritance Interest Grabber Section 11-1 Analyzing Inheritance Offspring resemble their parents. Offspring inherit genes for characteristics from their parents. To learn about inheritance, scientists have experimented

More information

of selection intensity over loci along the chromosome.

of selection intensity over loci along the chromosome. Proc. Nat. Acad. Sci. USA Vol. 69, No. 9, pp. 2474-2478, September 1972 Is the Gene the Unit of Selection? Evidence from Two Experimental Plant Populations (barley/enzyme polymorphisms/gametic phase disequilibrium/linkage

More information

Lecture 7 Correlated Characters

Lecture 7 Correlated Characters Lecture 7 Correlated Characters Bruce Walsh. Sept 2007. Summer Institute on Statistical Genetics, Liège Genetic and Environmental Correlations Many characters are positively or negatively correlated at

More information

MEIOSIS, THE BASIS OF SEXUAL REPRODUCTION

MEIOSIS, THE BASIS OF SEXUAL REPRODUCTION MEIOSIS, THE BASIS OF SEXUAL REPRODUCTION Why do kids look different from the parents? How are they similar to their parents? Why aren t brothers or sisters more alike? Meiosis A process where the number

More information

Quantitative characters - exercises

Quantitative characters - exercises Quantitative characters - exercises 1. a) Calculate the genetic covariance between half sibs, expressed in the ij notation (Cockerham's notation), when up to loci are considered. b) Calculate the genetic

More information

Statistical issues in QTL mapping in mice

Statistical issues in QTL mapping in mice Statistical issues in QTL mapping in mice Karl W Broman Department of Biostatistics Johns Hopkins University http://www.biostat.jhsph.edu/~kbroman Outline Overview of QTL mapping The X chromosome Mapping

More information

Meiosis and Mendel. Chapter 6

Meiosis and Mendel. Chapter 6 Meiosis and Mendel Chapter 6 6.1 CHROMOSOMES AND MEIOSIS Key Concept Gametes have half the number of chromosomes that body cells have. Body Cells vs. Gametes You have body cells and gametes body cells

More information

Section 11 1 The Work of Gregor Mendel

Section 11 1 The Work of Gregor Mendel Chapter 11 Introduction to Genetics Section 11 1 The Work of Gregor Mendel (pages 263 266) What is the principle of dominance? What happens during segregation? Gregor Mendel s Peas (pages 263 264) 1. The

More information

Quantitative Genetics

Quantitative Genetics Bruce Walsh, University of Arizona, Tucson, Arizona, USA Almost any trait that can be defined shows variation, both within and between populations. Quantitative genetics is concerned with the analysis

More information

Objectives. Announcements. Comparison of mitosis and meiosis

Objectives. Announcements. Comparison of mitosis and meiosis Announcements Colloquium sessions for which you can get credit posted on web site: Feb 20, 27 Mar 6, 13, 20 Apr 17, 24 May 15. Review study CD that came with text for lab this week (especially mitosis

More information

STAT 536: Migration. Karin S. Dorman. October 3, Department of Statistics Iowa State University

STAT 536: Migration. Karin S. Dorman. October 3, Department of Statistics Iowa State University STAT 536: Migration Karin S. Dorman Department of Statistics Iowa State University October 3, 2006 Migration Introduction Migration is the movement of individuals between populations. Until now we have

More information

Sexual Reproduction and Genetics

Sexual Reproduction and Genetics Chapter Test A CHAPTER 10 Sexual Reproduction and Genetics Part A: Multiple Choice In the space at the left, write the letter of the term, number, or phrase that best answers each question. 1. How many

More information

The Quantitative TDT

The Quantitative TDT The Quantitative TDT (Quantitative Transmission Disequilibrium Test) Warren J. Ewens NUS, Singapore 10 June, 2009 The initial aim of the (QUALITATIVE) TDT was to test for linkage between a marker locus

More information

There are 3 parts to this exam. Take your time and be sure to put your name on the top of each page.

There are 3 parts to this exam. Take your time and be sure to put your name on the top of each page. EVOLUTIONARY BIOLOGY BIOS 30305 EXAM #2 FALL 2011 There are 3 parts to this exam. Take your time and be sure to put your name on the top of each page. Part I. True (T) or False (F) (2 points each). 1)

More information

Mechanisms of Evolution

Mechanisms of Evolution Mechanisms of Evolution 36-149 The Tree of Life Christopher R. Genovese Department of Statistics 132H Baker Hall x8-7836 http://www.stat.cmu.edu/ ~ genovese/. Plan 1. Two More Generations 2. The Hardy-Weinberg

More information

Yesterday s Picture UNIT 3D

Yesterday s Picture UNIT 3D Warm-Up Blood types are determined by a single gene with several alleles. The allele encoding the Type A phenotype (I A ) is dominant to the allele encoding the Type O phenotype (i). Determine the phenotype

More information

Darwinian Selection. Chapter 7 Selection I 12/5/14. v evolution vs. natural selection? v evolution. v natural selection

Darwinian Selection. Chapter 7 Selection I 12/5/14. v evolution vs. natural selection? v evolution. v natural selection Chapter 7 Selection I Selection in Haploids Selection in Diploids Mutation-Selection Balance Darwinian Selection v evolution vs. natural selection? v evolution ² descent with modification ² change in allele

More information

Directed Reading B. Section: Traits and Inheritance A GREAT IDEA

Directed Reading B. Section: Traits and Inheritance A GREAT IDEA Skills Worksheet Directed Reading B Section: Traits and Inheritance A GREAT IDEA 1. One set of instructions for an inherited trait is a(n) a. allele. c. genotype. d. gene. 2. How many sets of the same

More information

Name Class Date. Pearson Education, Inc., publishing as Pearson Prentice Hall. 33

Name Class Date. Pearson Education, Inc., publishing as Pearson Prentice Hall. 33 Chapter 11 Introduction to Genetics Chapter Vocabulary Review Matching On the lines provided, write the letter of the definition of each term. 1. genetics a. likelihood that something will happen 2. trait

More information

Linkage and Linkage Disequilibrium

Linkage and Linkage Disequilibrium Linkage and Linkage Disequilibrium Summer Institute in Statistical Genetics 2014 Module 10 Topic 3 Linkage in a simple genetic cross Linkage In the early 1900 s Bateson and Punnet conducted genetic studies

More information

Introduction to QTL mapping in model organisms

Introduction to QTL mapping in model organisms Introduction to QTL mapping in model organisms Karl W Broman Department of Biostatistics Johns Hopkins University kbroman@jhsph.edu www.biostat.jhsph.edu/ kbroman Outline Experiments and data Models ANOVA

More information

7.014 Problem Set 6 Solutions

7.014 Problem Set 6 Solutions 7.014 Problem Set 6 Solutions Question 1 a) Define the following terms: Dominant In genetics, the ability of one allelic form of a gene to determine the phenotype of a heterozygous individual, in which

More information

Temporal changes in allele frequencies in two reciprocally selected maize populations

Temporal changes in allele frequencies in two reciprocally selected maize populations Theor Appl Genet (1999) 99:1166 1178 Springer-Verlag 1999 ORIGINAL ARTICLE J.A. Labate K.R. Lamkey M. Lee W.L. Woodman Temporal changes in allele frequencies in two reciprocally selected maize populations

More information

genome a specific characteristic that varies from one individual to another gene the passing of traits from one generation to the next

genome a specific characteristic that varies from one individual to another gene the passing of traits from one generation to the next genetics the study of heredity heredity sequence of DNA that codes for a protein and thus determines a trait genome a specific characteristic that varies from one individual to another gene trait the passing

More information

Animal Genetics - MENDELU

Animal Genetics - MENDELU Mendel and his experiments Animal Genetics Gregor Johann Mendel (1822-1884) was born in Heinzendorf, (nowadays in the Czech Republic). During the period in which Mendel developed his theory of heredity,

More information

Microevolution (Ch 16) Test Bank

Microevolution (Ch 16) Test Bank Microevolution (Ch 16) Test Bank Multiple Choice Identify the letter of the choice that best completes the statement or answers the question. 1. Which of the following statements describes what all members

More information