Fault Detection and Diagnosis Using Information Measures
|
|
- Reginald Cooper
- 5 years ago
- Views:
Transcription
1 Fault Detection and Diagnosis Using Information Measures Rudolf Kulhavý Honewell Technolog Center & Institute of Information Theor and Automation Prague, Cech Republic
2 Outline Probabilit-based inference revisited Fundamentals of information geometr Finite-memor inference Minimum Relative Entrop MRE approximation Implementation Marov Chain Monte Carlo MCMC methods Brute-Force Alternative Monte Carlo Again: Weighted Bootstrap
3 Lielihood-based Inference General regression Model Lielihood function Posterior densit,, m m m m m m m m s c u u q l + + = = = m m u + + = =,,,,, Κ n R T s, 0 l p p = c
4 Information-based Inference Empirical densit r Conditional inaccurac Lielihood l K, = δ, = c exp K r Posterior densit = r : s r, s : = log d d s p l p = c 0 + m log s = m+
5 r r s r r s r s r K d d log, d d log, d d log, : + = = Conditional Inaccurac conditional relative entrop conditional Shannon entrop
6 Example: Random-Coefficient AR Model µ + v + e Assumptions µ is v e = is is constant 0, σ 0, σ 2 v 2 e distributed distributed 2 2 = µ, σ v, σ e Theoretical densit s = exp µ 2 2 2π σ 2σ histor dependent 2 2 e variance σ = σ σ 2 v!
7 Empirical vs Theoretical Densit 4 scatter plot histogram = =
8 Testing of Various Hpotheses 4 = = 0.03 σ v 4 2 = 0.03 σ e
9 Minimum Inaccurac MI min n λ R s K r : s S r, s,,λˆ K unnormalied inaccurac s = r, log d s = log l + const. r : d S = exponential envelope, = c s exp h s,, λ λ MI coincides with Maximum Lielihood!
10 Minimum Relative Entrop MRE s min r R D r s r, s,,λˆ R = h-compatible set R r, h, d d = = h, = h D unnormalied relative entrop r, r s = r, log d s d MRE generalies Maximum Entrop!
11 Unnormalied Relative Entrop D r s = r, log r s, d d = r r log r s d d r log r d conditional relative entrop marginal Shannon entrop
12 Information Geometr r, h-projection s S R s, h, d d s,,λˆ, ˆ λ =, h, d d h r = K r : s = K r : s ˆ D s ˆ, λ +, λ s Pthagorean theorem
13 Outline Probabilit-based inference revisited Fundamentals of information geometr Finite-memor inference Minimum Relative Entrop MRE approximation Implementation Marov Chain Monte Carlo MCMC methods Brute-Force Alternative Monte Carlo Again: Weighted Bootstrap
14 MRE Approximation r, R choose h, so that r const. K : s, ˆ λ for expected values of s S s,,λˆ 2 approximate K r : s 3 approximate posterior densit via minimum relative entrop pˆ = c p0 exp D R s D R s = min D r s r R
15 MRE Algorithm Convex optimiation problem eas part D R s = min [ ψ, λ λ h n λ R ] Logarithm of normaliing divisor difficult part exp h, s ψ, λ = log λ d d
16 Choice of Statistic Differencing h, = log s Differentiation h i i Weighted integration h i i+ log s, = ω grad log s i = i i, w log s d i w i d = 0
17 Two Simple Hpotheses s 0 s 0 s s log, 0 s s h = implies r r, exp 0 h s c s λ λ = log 0 l l h = exponential envelope
18 Two Composite Hpotheses r H 0 s λˆ H exponential famil enveloping H 0, H
19 Construction of h-statistic: Differencing = + e = + v h Cauch noise = arctan + e = sin + e h h
20 Construction of h-statistic: Differentiation h h = 0. = 0.4 h = sin + e = 0.2
21 Example: Sensor Validation Monitoring of signal differences e = Model = mixture of 3 normal distributions 0, v + 0,0.0* v + 0,00 * v f g f g normal operation froen sensor gross errors Unnown parameters probabilities, Statistic chosen s hi e = log s i f g e e = [0,0] = [,0] 2 = [0,] 3 = [/ 3,/ 3]
22 Signal Difference 5 e
23 Relative Entrop log D R s 2
24 Posterior Densit ˆ p 2
25 Outline Probabilit-based inference revisited Fundamentals of information geometr Finite-memor inference Minimum Relative Entrop MRE approximation Implementation Marov Chain Monte Carlo MCMC methods Brute-Force Alternative Monte Carlo Again: Weighted Bootstrap
26 MRE Algorithm Dual optimiation tas ψ, λ D R s = max [ λ h log s n λ R umerical integration necessar exp λ h, d d ] sample,, Κ,, from, ernel estimate M M sˆ, λ, from D s sˆ = ε 0 it follows ψ, λ, λ M i i s exp h, log λ λ M i i i= sˆ, λ s, λ i, i
27 MRE Implementation Metropolis sampler, Κ, M MRE Optimiation Metropolis sampler Tilted model densit Model densit x R s D, Κ, x s, λ x s x i x =,
28 Sample-based Computations expectation E covariance Cov probabilit of the event Rao-Blacwellied estimate M sˆ = s i M i P A = A p d marginal densit of a given = a, b predictive densit direct sampling sample from s i i=
29 Metropolis Sampler I. Sample x from π x. Accept + x i = x w.p. α. π x px α = min p x p x / π x / π x i i,
30 Metropolis Sampler II. Random wal x = x i + n. Accept + x i = x w.p. α. px α = min p x p x i,
31 Example: Metropolis Sampling scatter plot histogram
32 Outline Probabilit-based inference revisited Fundamentals of information geometr Finite-memor inference Minimum Relative Entrop MRE approximation Implementation Marov Chain Monte Carlo MCMC methods Brute-Force Alternative Monte Carlo Again: Weighted Bootstrap
33 Weighted Bootstrap Filtering model time update data update calculate normalied weights resample M-times from the discrete distribution over with probabilit mass w i associated with element i,, v x g w x f x = = M i w x f x i i i,,,, Κ = = },, : { M i x i Κ = = = M j j i i x p x p w
34 Stochastic Simulation measured data RESAMPLIG current filtered state Model of Process Dnamics new predicted state Model of Sensors predicted sensor response
35 Example: onisothermal CSTR c Af, T f F CSTR model dc dt A = c A T c A + c Af, Q c V c A,T c A,T F dt dt = T β T c T = 0 exp E / RT A + T Reaction rate Arrhenius relation f χ, Ref: Seborg, Edgar, Mellichamp 989, Exercise 5.2
36 Variable Feed 0.86 Variations in feed concentration [lb mole/ft 3 ] 0.84 c Af Variations in feed temperature [ o F] 50 T f
37 Cooling Effect 5 Periodic cooling 4 χ Temperature [ o F] 60 T
38 State Estimation 0.03 Concentration [lb mole/ft 3 ] c A Temperature [ o F] T
39 Measurement Prediction 0.03 Concentration measurements vs predictions c A Temperature measurements vs predictions 60 T
40 State Estimation with Sensor Validation 0.03 Concentration [lb mole/ft 3 ] c A Temperature [ o F] 60 T
41 Conclusions Theor: Information geometr ields additional insight. Information geometr is tolerant to approximations and cheating. Algorithm: Iterative sampling and importance resampling Monte Carlo schemes offer powerful tools to manage the curse of dimensionalit. Benefit: Fine description of uncertaint results in lower missed & false alarm rates, and shorter dela in detection.
42 Further Reading T.M. Cover and J.A. Thomas 99. Elements of Information Theor. Wile, ew Yor. R. E. Blahut 987. Principles and Practice of Information Theor. Addison-Wesle, Reading, MA. L. Tierne 994. Marov chains for exploring posterior distributions. Ann. Statist., 22, A.F.M. Smith and A.E. Gelfand 992. Baesian statistics without tears: a sampling-resampling perspective. Amer. Statist., 46, R. Kulhavý 996. Recursive onlinear Estimation: A Geometric Approach. Springer-Verlag, London.
arxiv: v2 [stat.ml] 15 Aug 2017
Worshop trac - ICLR 207 REINTERPRETING IMPORTANCE-WEIGHTED AUTOENCODERS Chris Cremer, Quaid Morris & David Duvenaud Department of Computer Science University of Toronto {ccremer,duvenaud}@cs.toronto.edu
More informationLecture 8: Bayesian Estimation of Parameters in State Space Models
in State Space Models March 30, 2016 Contents 1 Bayesian estimation of parameters in state space models 2 Computational methods for parameter estimation 3 Practical parameter estimation in state space
More informationExercises Tutorial at ICASSP 2016 Learning Nonlinear Dynamical Models Using Particle Filters
Exercises Tutorial at ICASSP 216 Learning Nonlinear Dynamical Models Using Particle Filters Andreas Svensson, Johan Dahlin and Thomas B. Schön March 18, 216 Good luck! 1 [Bootstrap particle filter for
More informationF denotes cumulative density. denotes probability density function; (.)
BAYESIAN ANALYSIS: FOREWORDS Notation. System means the real thing and a model is an assumed mathematical form for the system.. he probability model class M contains the set of the all admissible models
More informationQUO VADIS, BAYESIAN IDENTIFICATION?
QUO VADIS BAYESIA IDETIFICATIO? RUDOLF KULHAVÝ AD PETYA IVAOVA Honewell Technolog Center Europe Prague and Institute of Information Theor and Automation AS CR Prague Tel: 4 665 33 Fax: 4 688 493 E-mail:
More informationLecture 2: From Linear Regression to Kalman Filter and Beyond
Lecture 2: From Linear Regression to Kalman Filter and Beyond January 18, 2017 Contents 1 Batch and Recursive Estimation 2 Towards Bayesian Filtering 3 Kalman Filter and Bayesian Filtering and Smoothing
More informationSequential Monte Carlo Methods for Bayesian Computation
Sequential Monte Carlo Methods for Bayesian Computation A. Doucet Kyoto Sept. 2012 A. Doucet (MLSS Sept. 2012) Sept. 2012 1 / 136 Motivating Example 1: Generic Bayesian Model Let X be a vector parameter
More informationMonte Carlo integration
Monte Carlo integration Eample of a Monte Carlo sampler in D: imagine a circle radius L/ within a square of LL. If points are randoml generated over the square, what s the probabilit to hit within circle?
More informationExample: Ground Motion Attenuation
Example: Ground Motion Attenuation Problem: Predict the probability distribution for Peak Ground Acceleration (PGA), the level of ground shaking caused by an earthquake Earthquake records are used to update
More informationThe Unscented Particle Filter
The Unscented Particle Filter Rudolph van der Merwe (OGI) Nando de Freitas (UC Bereley) Arnaud Doucet (Cambridge University) Eric Wan (OGI) Outline Optimal Estimation & Filtering Optimal Recursive Bayesian
More informationBayesian Inference. Sudhir Shankar Raman Translational Neuromodeling Unit, UZH & ETH. The Reverend Thomas Bayes ( )
The Reverend Thomas Baes (1702-1761) Baesian Inference Sudhir Shankar Raman Translational Neuromodeling Unit, UZH & ETH With man thanks for some slides to: Klaas Enno Stephan & Ka H. Brodersen Wh do I
More informationMONTE CARLO METHODS. Hedibert Freitas Lopes
MONTE CARLO METHODS Hedibert Freitas Lopes The University of Chicago Booth School of Business 5807 South Woodlawn Avenue, Chicago, IL 60637 http://faculty.chicagobooth.edu/hedibert.lopes hlopes@chicagobooth.edu
More informationProbability: Review. Pieter Abbeel UC Berkeley EECS. Many slides adapted from Thrun, Burgard and Fox, Probabilistic Robotics
robabilit: Review ieter Abbeel UC Berkele EECS Man slides adapted from Thrun Burgard and Fo robabilistic Robotics Wh probabilit in robotics? Often state of robot and state of its environment are unknown
More informationBayesian Methods for Machine Learning
Bayesian Methods for Machine Learning CS 584: Big Data Analytics Material adapted from Radford Neal s tutorial (http://ftp.cs.utoronto.ca/pub/radford/bayes-tut.pdf), Zoubin Ghahramni (http://hunch.net/~coms-4771/zoubin_ghahramani_bayesian_learning.pdf),
More informationHastings-within-Gibbs Algorithm: Introduction and Application on Hierarchical Model
UNIVERSITY OF TEXAS AT SAN ANTONIO Hastings-within-Gibbs Algorithm: Introduction and Application on Hierarchical Model Liang Jing April 2010 1 1 ABSTRACT In this paper, common MCMC algorithms are introduced
More informationParticle Filters: Convergence Results and High Dimensions
Particle Filters: Convergence Results and High Dimensions Mark Coates mark.coates@mcgill.ca McGill University Department of Electrical and Computer Engineering Montreal, Quebec, Canada Bellairs 2012 Outline
More informationKazuhiko Kakamu Department of Economics Finance, Institute for Advanced Studies. Abstract
Bayesian Estimation of A Distance Functional Weight Matrix Model Kazuhiko Kakamu Department of Economics Finance, Institute for Advanced Studies Abstract This paper considers the distance functional weight
More informationPattern Recognition and Machine Learning
Christopher M. Bishop Pattern Recognition and Machine Learning ÖSpri inger Contents Preface Mathematical notation Contents vii xi xiii 1 Introduction 1 1.1 Example: Polynomial Curve Fitting 4 1.2 Probability
More informationKernel adaptive Sequential Monte Carlo
Kernel adaptive Sequential Monte Carlo Ingmar Schuster (Paris Dauphine) Heiko Strathmann (University College London) Brooks Paige (Oxford) Dino Sejdinovic (Oxford) December 7, 2015 1 / 36 Section 1 Outline
More informationComputer Vision Group Prof. Daniel Cremers. 11. Sampling Methods
Prof. Daniel Cremers 11. Sampling Methods Sampling Methods Sampling Methods are widely used in Computer Science as an approximation of a deterministic algorithm to represent uncertainty without a parametric
More informationSupplement to A Hierarchical Approach for Fitting Curves to Response Time Measurements
Supplement to A Hierarchical Approach for Fitting Curves to Response Time Measurements Jeffrey N. Rouder Francis Tuerlinckx Paul L. Speckman Jun Lu & Pablo Gomez May 4 008 1 The Weibull regression model
More informationSpatio-temporal precipitation modeling based on time-varying regressions
Spatio-temporal precipitation modeling based on time-varying regressions Oleg Makhnin Department of Mathematics New Mexico Tech Socorro, NM 87801 January 19, 2007 1 Abstract: A time-varying regression
More informationBayesian and Monte Carlo change-point detection
Bayesian and Monte Carlo change-point detection ROMN CMEJL, PVEL SOVK, MIROSLV SRUPL, JN UHLIR Department Circuit heory Czech echnical University in Prague echnica, 66 7 Prague 6 CZECH REPUBLIC bstract:
More informationSimulation of truncated normal variables. Christian P. Robert LSTA, Université Pierre et Marie Curie, Paris
Simulation of truncated normal variables Christian P. Robert LSTA, Université Pierre et Marie Curie, Paris Abstract arxiv:0907.4010v1 [stat.co] 23 Jul 2009 We provide in this paper simulation algorithms
More information(5) Multi-parameter models - Gibbs sampling. ST440/540: Applied Bayesian Analysis
Summarizing a posterior Given the data and prior the posterior is determined Summarizing the posterior gives parameter estimates, intervals, and hypothesis tests Most of these computations are integrals
More informationCalibration of Stochastic Volatility Models using Particle Markov Chain Monte Carlo Methods
Calibration of Stochastic Volatility Models using Particle Markov Chain Monte Carlo Methods Jonas Hallgren 1 1 Department of Mathematics KTH Royal Institute of Technology Stockholm, Sweden BFS 2012 June
More informationWavelet-Based Nonparametric Modeling of Hierarchical Functions in Colon Carcinogenesis
Wavelet-Based Nonparametric Modeling of Hierarchical Functions in Colon Carcinogenesis Jeffrey S. Morris University of Texas, MD Anderson Cancer Center Joint wor with Marina Vannucci, Philip J. Brown,
More informationPART I INTRODUCTION The meaning of probability Basic definitions for frequentist statistics and Bayesian inference Bayesian inference Combinatorics
Table of Preface page xi PART I INTRODUCTION 1 1 The meaning of probability 3 1.1 Classical definition of probability 3 1.2 Statistical definition of probability 9 1.3 Bayesian understanding of probability
More informationBayesian Inference in GLMs. Frequentists typically base inferences on MLEs, asymptotic confidence
Bayesian Inference in GLMs Frequentists typically base inferences on MLEs, asymptotic confidence limits, and log-likelihood ratio tests Bayesians base inferences on the posterior distribution of the unknowns
More informationStatistical Inference for Stochastic Epidemic Models
Statistical Inference for Stochastic Epidemic Models George Streftaris 1 and Gavin J. Gibson 1 1 Department of Actuarial Mathematics & Statistics, Heriot-Watt University, Riccarton, Edinburgh EH14 4AS,
More informationMarkov Chain Monte Carlo methods
Markov Chain Monte Carlo methods By Oleg Makhnin 1 Introduction a b c M = d e f g h i 0 f(x)dx 1.1 Motivation 1.1.1 Just here Supresses numbering 1.1.2 After this 1.2 Literature 2 Method 2.1 New math As
More informationCPSC 540: Machine Learning
CPSC 540: Machine Learning MCMC and Non-Parametric Bayes Mark Schmidt University of British Columbia Winter 2016 Admin I went through project proposals: Some of you got a message on Piazza. No news is
More informationGaussian Mixture Model
Case Study : Document Retrieval MAP EM, Latent Dirichlet Allocation, Gibbs Sampling Machine Learning/Statistics for Big Data CSE599C/STAT59, University of Washington Emily Fox 0 Emily Fox February 5 th,
More informationMini-Course 07 Kalman Particle Filters. Henrique Massard da Fonseca Cesar Cunha Pacheco Wellington Bettencurte Julio Dutra
Mini-Course 07 Kalman Particle Filters Henrique Massard da Fonseca Cesar Cunha Pacheco Wellington Bettencurte Julio Dutra Agenda State Estimation Problems & Kalman Filter Henrique Massard Steady State
More informationST 740: Markov Chain Monte Carlo
ST 740: Markov Chain Monte Carlo Alyson Wilson Department of Statistics North Carolina State University October 14, 2012 A. Wilson (NCSU Stsatistics) MCMC October 14, 2012 1 / 20 Convergence Diagnostics:
More informationECE276A: Sensing & Estimation in Robotics Lecture 10: Gaussian Mixture and Particle Filtering
ECE276A: Sensing & Estimation in Robotics Lecture 10: Gaussian Mixture and Particle Filtering Lecturer: Nikolay Atanasov: natanasov@ucsd.edu Teaching Assistants: Siwei Guo: s9guo@eng.ucsd.edu Anwesan Pal:
More informationAfternoon Meeting on Bayesian Computation 2018 University of Reading
Gabriele Abbati 1, Alessra Tosi 2, Seth Flaxman 3, Michael A Osborne 1 1 University of Oxford, 2 Mind Foundry Ltd, 3 Imperial College London Afternoon Meeting on Bayesian Computation 2018 University of
More informationComputer Vision Group Prof. Daniel Cremers. 14. Sampling Methods
Prof. Daniel Cremers 14. Sampling Methods Sampling Methods Sampling Methods are widely used in Computer Science as an approximation of a deterministic algorithm to represent uncertainty without a parametric
More informationOnline appendix to On the stability of the excess sensitivity of aggregate consumption growth in the US
Online appendix to On the stability of the excess sensitivity of aggregate consumption growth in the US Gerdie Everaert 1, Lorenzo Pozzi 2, and Ruben Schoonackers 3 1 Ghent University & SHERPPA 2 Erasmus
More informationSimulated Annealing for Constrained Global Optimization
Monte Carlo Methods for Computation and Optimization Final Presentation Simulated Annealing for Constrained Global Optimization H. Edwin Romeijn & Robert L.Smith (1994) Presented by Ariel Schwartz Objective
More informationIntroduction to Machine Learning
Introduction to Machine Learning Brown University CSCI 1950-F, Spring 2012 Prof. Erik Sudderth Lecture 25: Markov Chain Monte Carlo (MCMC) Course Review and Advanced Topics Many figures courtesy Kevin
More informationSensor Fusion: Particle Filter
Sensor Fusion: Particle Filter By: Gordana Stojceska stojcesk@in.tum.de Outline Motivation Applications Fundamentals Tracking People Advantages and disadvantages Summary June 05 JASS '05, St.Petersburg,
More informationFactorization of Seperable and Patterned Covariance Matrices for Gibbs Sampling
Monte Carlo Methods Appl, Vol 6, No 3 (2000), pp 205 210 c VSP 2000 Factorization of Seperable and Patterned Covariance Matrices for Gibbs Sampling Daniel B Rowe H & SS, 228-77 California Institute of
More informationResults: MCMC Dancers, q=10, n=500
Motivation Sampling Methods for Bayesian Inference How to track many INTERACTING targets? A Tutorial Frank Dellaert Results: MCMC Dancers, q=10, n=500 1 Probabilistic Topological Maps Results Real-Time
More informationSession 3A: Markov chain Monte Carlo (MCMC)
Session 3A: Markov chain Monte Carlo (MCMC) John Geweke Bayesian Econometrics and its Applications August 15, 2012 ohn Geweke Bayesian Econometrics and its Session Applications 3A: Markov () chain Monte
More informationPrinciples of Bayesian Inference
Principles of Bayesian Inference Sudipto Banerjee University of Minnesota July 20th, 2008 1 Bayesian Principles Classical statistics: model parameters are fixed and unknown. A Bayesian thinks of parameters
More informationSTA 4273H: Statistical Machine Learning
STA 4273H: Statistical Machine Learning Russ Salakhutdinov Department of Statistics! rsalakhu@utstat.toronto.edu! http://www.utstat.utoronto.ca/~rsalakhu/ Sidney Smith Hall, Room 6002 Lecture 7 Approximate
More informationSupplementary Material: A Robust Approach to Sequential Information Theoretic Planning
Supplementar aterial: A Robust Approach to Sequential Information Theoretic Planning Sue Zheng Jason Pacheco John W. Fisher, III. Proofs of Estimator Properties.. Proof of Prop. Here we show how the bias
More informationPetr Volf. Model for Difference of Two Series of Poisson-like Count Data
Petr Volf Institute of Information Theory and Automation Academy of Sciences of the Czech Republic Pod vodárenskou věží 4, 182 8 Praha 8 e-mail: volf@utia.cas.cz Model for Difference of Two Series of Poisson-like
More informationStatistics & Data Sciences: First Year Prelim Exam May 2018
Statistics & Data Sciences: First Year Prelim Exam May 2018 Instructions: 1. Do not turn this page until instructed to do so. 2. Start each new question on a new sheet of paper. 3. This is a closed book
More informationMarkov chain Monte Carlo
1 / 26 Markov chain Monte Carlo Timothy Hanson 1 and Alejandro Jara 2 1 Division of Biostatistics, University of Minnesota, USA 2 Department of Statistics, Universidad de Concepción, Chile IAP-Workshop
More informationApproximate Bayesian computation: an application to weak-lensing peak counts
STATISTICAL CHALLENGES IN MODERN ASTRONOMY VI Approximate Bayesian computation: an application to weak-lensing peak counts Chieh-An Lin & Martin Kilbinger SAp, CEA Saclay Carnegie Mellon University, Pittsburgh
More informationStat 516, Homework 1
Stat 516, Homework 1 Due date: October 7 1. Consider an urn with n distinct balls numbered 1,..., n. We sample balls from the urn with replacement. Let N be the number of draws until we encounter a ball
More informationThe Particle Filter. PD Dr. Rudolph Triebel Computer Vision Group. Machine Learning for Computer Vision
The Particle Filter Non-parametric implementation of Bayes filter Represents the belief (posterior) random state samples. by a set of This representation is approximate. Can represent distributions that
More informationLecture 2: From Linear Regression to Kalman Filter and Beyond
Lecture 2: From Linear Regression to Kalman Filter and Beyond Department of Biomedical Engineering and Computational Science Aalto University January 26, 2012 Contents 1 Batch and Recursive Estimation
More informationAUTOMOTIVE ENVIRONMENT SENSORS
AUTOMOTIVE ENVIRONMENT SENSORS Lecture 5. Localization BME KÖZLEKEDÉSMÉRNÖKI ÉS JÁRMŰMÉRNÖKI KAR 32708-2/2017/INTFIN SZÁMÚ EMMI ÁLTAL TÁMOGATOTT TANANYAG Related concepts Concepts related to vehicles moving
More informationBayesian spatial hierarchical modeling for temperature extremes
Bayesian spatial hierarchical modeling for temperature extremes Indriati Bisono Dr. Andrew Robinson Dr. Aloke Phatak Mathematics and Statistics Department The University of Melbourne Maths, Informatics
More informationState-Space Methods for Inferring Spike Trains from Calcium Imaging
State-Space Methods for Inferring Spike Trains from Calcium Imaging Joshua Vogelstein Johns Hopkins April 23, 2009 Joshua Vogelstein (Johns Hopkins) State-Space Calcium Imaging April 23, 2009 1 / 78 Outline
More informationIntroduction to Machine Learning CMU-10701
Introduction to Machine Learning CMU-10701 Markov Chain Monte Carlo Methods Barnabás Póczos & Aarti Singh Contents Markov Chain Monte Carlo Methods Goal & Motivation Sampling Rejection Importance Markov
More informationStatistical Inference and Methods
Department of Mathematics Imperial College London d.stephens@imperial.ac.uk http://stats.ma.ic.ac.uk/ das01/ 31st January 2006 Part VI Session 6: Filtering and Time to Event Data Session 6: Filtering and
More informationMarkov Chain Monte Carlo
Markov Chain Monte Carlo Recall: To compute the expectation E ( h(y ) ) we use the approximation E(h(Y )) 1 n n h(y ) t=1 with Y (1),..., Y (n) h(y). Thus our aim is to sample Y (1),..., Y (n) from f(y).
More informationSummary of lecture 8. FIR Wiener filter: computed by solving a finite number of Wiener-Hopf equations, h(i)r yy (k i) = R sy (k); k = 0; : : : ; m
Summar of lecture 8 FIR Wiener filter: computed b solving a finite number of Wiener-Hopf equations, mx i= h(i)r (k i) = R s (k); k = ; : : : ; m Whitening filter: A filter that removes the correlation
More informationSTA 4273H: Sta-s-cal Machine Learning
STA 4273H: Sta-s-cal Machine Learning Russ Salakhutdinov Department of Computer Science! Department of Statistical Sciences! rsalakhu@cs.toronto.edu! h0p://www.cs.utoronto.ca/~rsalakhu/ Lecture 2 In our
More informationMarkov Chain Monte Carlo Methods for Stochastic Optimization
Markov Chain Monte Carlo Methods for Stochastic Optimization John R. Birge The University of Chicago Booth School of Business Joint work with Nicholas Polson, Chicago Booth. JRBirge U of Toronto, MIE,
More informationAuxiliary Particle Methods
Auxiliary Particle Methods Perspectives & Applications Adam M. Johansen 1 adam.johansen@bristol.ac.uk Oxford University Man Institute 29th May 2008 1 Collaborators include: Arnaud Doucet, Nick Whiteley
More informationThe Bayesian Choice. Christian P. Robert. From Decision-Theoretic Foundations to Computational Implementation. Second Edition.
Christian P. Robert The Bayesian Choice From Decision-Theoretic Foundations to Computational Implementation Second Edition With 23 Illustrations ^Springer" Contents Preface to the Second Edition Preface
More informationParticle Filtering Approaches for Dynamic Stochastic Optimization
Particle Filtering Approaches for Dynamic Stochastic Optimization John R. Birge The University of Chicago Booth School of Business Joint work with Nicholas Polson, Chicago Booth. JRBirge I-Sim Workshop,
More informationAdvances and Applications in Perfect Sampling
and Applications in Perfect Sampling Ph.D. Dissertation Defense Ulrike Schneider advisor: Jem Corcoran May 8, 2003 Department of Applied Mathematics University of Colorado Outline Introduction (1) MCMC
More informationStat 451 Lecture Notes Markov Chain Monte Carlo. Ryan Martin UIC
Stat 451 Lecture Notes 07 12 Markov Chain Monte Carlo Ryan Martin UIC www.math.uic.edu/~rgmartin 1 Based on Chapters 8 9 in Givens & Hoeting, Chapters 25 27 in Lange 2 Updated: April 4, 2016 1 / 42 Outline
More informationMarkov Chain Monte Carlo Methods for Stochastic
Markov Chain Monte Carlo Methods for Stochastic Optimization i John R. Birge The University of Chicago Booth School of Business Joint work with Nicholas Polson, Chicago Booth. JRBirge U Florida, Nov 2013
More informationMarkov Chain Monte Carlo methods
Markov Chain Monte Carlo methods Tomas McKelvey and Lennart Svensson Signal Processing Group Department of Signals and Systems Chalmers University of Technology, Sweden November 26, 2012 Today s learning
More informationLearning the hyper-parameters. Luca Martino
Learning the hyper-parameters Luca Martino 2017 2017 1 / 28 Parameters and hyper-parameters 1. All the described methods depend on some choice of hyper-parameters... 2. For instance, do you recall λ (bandwidth
More informationPart 1: Expectation Propagation
Chalmers Machine Learning Summer School Approximate message passing and biomedicine Part 1: Expectation Propagation Tom Heskes Machine Learning Group, Institute for Computing and Information Sciences Radboud
More informationBayesian Inference and MCMC
Bayesian Inference and MCMC Aryan Arbabi Partly based on MCMC slides from CSC412 Fall 2018 1 / 18 Bayesian Inference - Motivation Consider we have a data set D = {x 1,..., x n }. E.g each x i can be the
More informationSession 5B: A worked example EGARCH model
Session 5B: A worked example EGARCH model John Geweke Bayesian Econometrics and its Applications August 7, worked example EGARCH model August 7, / 6 EGARCH Exponential generalized autoregressive conditional
More informationDistributed Estimation, Information Loss and Exponential Families. Qiang Liu Department of Computer Science Dartmouth College
Distributed Estimation, Information Loss and Exponential Families Qiang Liu Department of Computer Science Dartmouth College Statistical Learning / Estimation Learning generative models from data Topic
More informationMarkov chain Monte Carlo methods for visual tracking
Markov chain Monte Carlo methods for visual tracking Ray Luo rluo@cory.eecs.berkeley.edu Department of Electrical Engineering and Computer Sciences University of California, Berkeley Berkeley, CA 94720
More informationRAO-BLACKWELLISED PARTICLE FILTERS: EXAMPLES OF APPLICATIONS
RAO-BLACKWELLISED PARTICLE FILTERS: EXAMPLES OF APPLICATIONS Frédéric Mustière e-mail: mustiere@site.uottawa.ca Miodrag Bolić e-mail: mbolic@site.uottawa.ca Martin Bouchard e-mail: bouchard@site.uottawa.ca
More informationBayesian Inference for DSGE Models. Lawrence J. Christiano
Bayesian Inference for DSGE Models Lawrence J. Christiano Outline State space-observer form. convenient for model estimation and many other things. Bayesian inference Bayes rule. Monte Carlo integation.
More informationBut if z is conditioned on, we need to model it:
Partially Unobserved Variables Lecture 8: Unsupervised Learning & EM Algorithm Sam Roweis October 28, 2003 Certain variables q in our models may be unobserved, either at training time or at test time or
More informationComputer Intensive Methods in Mathematical Statistics
Computer Intensive Methods in Mathematical Statistics Department of mathematics johawes@kth.se Lecture 16 Advanced topics in computational statistics 18 May 2017 Computer Intensive Methods (1) Plan of
More informationSurveying the Characteristics of Population Monte Carlo
International Research Journal of Applied and Basic Sciences 2013 Available online at www.irjabs.com ISSN 2251-838X / Vol, 7 (9): 522-527 Science Explorer Publications Surveying the Characteristics of
More informationBayesian Model Comparison:
Bayesian Model Comparison: Modeling Petrobrás log-returns Hedibert Freitas Lopes February 2014 Log price: y t = log p t Time span: 12/29/2000-12/31/2013 (n = 3268 days) LOG PRICE 1 2 3 4 0 500 1000 1500
More informationA new class of interacting Markov Chain Monte Carlo methods
A new class of interacting Marov Chain Monte Carlo methods P Del Moral, A Doucet INRIA Bordeaux & UBC Vancouver Worshop on Numerics and Stochastics, Helsini, August 2008 Outline 1 Introduction Stochastic
More informationMultiple Imputation for Missing Data in Repeated Measurements Using MCMC and Copulas
Multiple Imputation for Missing Data in epeated Measurements Using MCMC and Copulas Lily Ingsrisawang and Duangporn Potawee Abstract This paper presents two imputation methods: Marov Chain Monte Carlo
More informationMonte Carlo in Bayesian Statistics
Monte Carlo in Bayesian Statistics Matthew Thomas SAMBa - University of Bath m.l.thomas@bath.ac.uk December 4, 2014 Matthew Thomas (SAMBa) Monte Carlo in Bayesian Statistics December 4, 2014 1 / 16 Overview
More informationA note on Reversible Jump Markov Chain Monte Carlo
A note on Reversible Jump Markov Chain Monte Carlo Hedibert Freitas Lopes Graduate School of Business The University of Chicago 5807 South Woodlawn Avenue Chicago, Illinois 60637 February, 1st 2006 1 Introduction
More informationKernel Sequential Monte Carlo
Kernel Sequential Monte Carlo Ingmar Schuster (Paris Dauphine) Heiko Strathmann (University College London) Brooks Paige (Oxford) Dino Sejdinovic (Oxford) * equal contribution April 25, 2016 1 / 37 Section
More informationRobust Monte Carlo Methods for Sequential Planning and Decision Making
Robust Monte Carlo Methods for Sequential Planning and Decision Making Sue Zheng, Jason Pacheco, & John Fisher Sensing, Learning, & Inference Group Computer Science & Artificial Intelligence Laboratory
More information2D Image Processing (Extended) Kalman and particle filter
2D Image Processing (Extended) Kalman and particle filter Prof. Didier Stricker Dr. Gabriele Bleser Kaiserlautern University http://ags.cs.uni-kl.de/ DFKI Deutsches Forschungszentrum für Künstliche Intelligenz
More informationPackage RcppSMC. March 18, 2018
Type Package Title Rcpp Bindings for Sequential Monte Carlo Version 0.2.1 Date 2018-03-18 Package RcppSMC March 18, 2018 Author Dirk Eddelbuettel, Adam M. Johansen and Leah F. South Maintainer Dirk Eddelbuettel
More informationA Comparison of Particle Filters for Personal Positioning
VI Hotine-Marussi Symposium of Theoretical and Computational Geodesy May 9-June 6. A Comparison of Particle Filters for Personal Positioning D. Petrovich and R. Piché Institute of Mathematics Tampere University
More informationFor final project discussion every afternoon Mark and I will be available
Worshop report 1. Daniels report is on website 2. Don t expect to write it based on listening to one project (we had 6 only 2 was sufficient quality) 3. I suggest writing it on one presentation. 4. Include
More informationBayesian Estimation of Input Output Tables for Russia
Bayesian Estimation of Input Output Tables for Russia Oleg Lugovoy (EDF, RANE) Andrey Polbin (RANE) Vladimir Potashnikov (RANE) WIOD Conference April 24, 2012 Groningen Outline Motivation Objectives Bayesian
More informationRank Regression with Normal Residuals using the Gibbs Sampler
Rank Regression with Normal Residuals using the Gibbs Sampler Stephen P Smith email: hucklebird@aol.com, 2018 Abstract Yu (2000) described the use of the Gibbs sampler to estimate regression parameters
More informationThree examples of a Practical Exact Markov Chain Sampling
Three examples of a Practical Exact Markov Chain Sampling Zdravko Botev November 2007 Abstract We present three examples of exact sampling from complex multidimensional densities using Markov Chain theory
More informationBayesian Methods with Monte Carlo Markov Chains II
Bayesian Methods with Monte Carlo Markov Chains II Henry Horng-Shing Lu Institute of Statistics National Chiao Tung University hslu@stat.nctu.edu.tw http://tigpbp.iis.sinica.edu.tw/courses.htm 1 Part 3
More informationOn a multivariate implementation of the Gibbs sampler
Note On a multivariate implementation of the Gibbs sampler LA García-Cortés, D Sorensen* National Institute of Animal Science, Research Center Foulum, PB 39, DK-8830 Tjele, Denmark (Received 2 August 1995;
More informationBayesian Modeling of Conditional Distributions
Bayesian Modeling of Conditional Distributions John Geweke University of Iowa Indiana University Department of Economics February 27, 2007 Outline Motivation Model description Methods of inference Earnings
More informationLecture 4: Dynamic models
linear s Lecture 4: s Hedibert Freitas Lopes The University of Chicago Booth School of Business 5807 South Woodlawn Avenue, Chicago, IL 60637 http://faculty.chicagobooth.edu/hedibert.lopes hlopes@chicagobooth.edu
More information