Adaptively Compressed Polarizability Operator
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1 Adaptively Compressed Polarizability Operator For Accelerating Large Scale ab initio Phonon Calculations Ze Xu 1 Lin Lin 2 Lexing Ying 3 1,2 UC Berkeley 3 ICME, Stanford University BASCD, December 3rd 2016 Ze Xu (UC Berkeley) ACP BASCD / 40
2 Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
3 Phonon Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
4 Phonon What is Phonon? In physics, a phonon is a collective excitation in a periodic, elastic arrangement of atoms or molecules in condensed matter... it represents an excited state in the quantum mechanical quantization of the modes of vibrations of elastic structures of interacting particles. wikipedia Ze Xu (UC Berkeley) ACP BASCD / 40
5 Phonon Lattice Wave Figure 1: Lattice wave example. Figure from wikipedia. Ze Xu (UC Berkeley) ACP BASCD / 40
6 Phonon Phonon Dispersion Relations Figure 2: Phonon dispersion and densities of states of gallium arsenide (GaAs). Figure from S. Baroni et al., Ze Xu (UC Berkeley) ACP BASCD / 40
7 Phonon Why Care? Ze Xu (UC Berkeley) ACP BASCD / 40
8 Phonon Why Care? Thermal conductivity; specific heat; Ze Xu (UC Berkeley) ACP BASCD / 40
9 Phonon Why Care? Thermal conductivity; specific heat; Elastic neutron scattering; Ze Xu (UC Berkeley) ACP BASCD / 40
10 Phonon Why Care? Thermal conductivity; specific heat; Elastic neutron scattering; Electrical conductivity; Ze Xu (UC Berkeley) ACP BASCD / 40
11 Phonon Why Care? Thermal conductivity; specific heat; Elastic neutron scattering; Electrical conductivity; Electron-phonon interaction related topics; Ze Xu (UC Berkeley) ACP BASCD / 40
12 Phonon Why Care? Thermal conductivity; specific heat; Elastic neutron scattering; Electrical conductivity; Electron-phonon interaction related topics; Ze Xu (UC Berkeley) ACP BASCD / 40
13 Phonon Elastic neutron scattering Thermal conductivity; specific heat; Elastic neutron scattering; Electrical conductivity; Electron-phonon interaction related topics; Figure 3: In elastic neutron-scattering, the neutron bounces off the bombarded nucleus without exciting or destabilizing it. Figure from The Schlumberger Oilfield Glossary. Ze Xu (UC Berkeley) ACP BASCD / 40
14 Phonon Electron-phonon interaction Thermal conductivity; specific heat; Elastic neutron scattering; Electrical conductivity; Electron-phonon interaction related topics; major contributor to electrical resistance in most inorganic metals and semiconductors above zero (very low) temperature; Overheating problem; Ze Xu (UC Berkeley) ACP BASCD / 40
15 Phonon Dynamical Matrix D I,J = 1 2 E tot ({R I }), MI M J R I R J M I mass of the I-th atom, I = 1,..., N A. R I R d position of the I-th atom, I = 1,..., N A. D R dn A dn A Ze Xu (UC Berkeley) ACP BASCD / 40
16 DFT Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
17 DFT Density Functional Theory Ab initio calculation DFT. most widely used; exact description of ground state properties: electron density, energy, and atomic forces. Ze Xu (UC Berkeley) ACP BASCD / 40
18 DFT Kohn-Sham Density Functional Theory E KS ({ψ i }; {R I }) = 1 N e ψ i (r) 2 dr + V ion (r; {R I })ρ(r) dr 2 i=1 + 1 v c (r, r )ρ(r)ρ(r ) dr dr + E xc [ρ] 2 (1) + E II ({R I }). Ze Xu (UC Berkeley) ACP BASCD / 40
19 DFT Derivative F I = VI (r R I )ρ(r) dr E II({R I }). R I R I 2 E tot ({R I }) = R I R J VI (r R I ) δρ(r) dr + δ I,J R I δr J + 2 E II ({R I }) R I R J. ρ(r) 2 V I R 2 (r R I ) dr I Ze Xu (UC Berkeley) ACP BASCD / 40
20 DFT Derivative F I = VI (r R I )ρ(r) dr E II({R I }). (2) R I R I 2 E tot ({R I }) = R I R J VI (r R I ) δρ(r) dr+δ I,J R I δr J + 2 E II ({R I }) R I R J. ρ(r) 2 V I R 2 (r R I ) dr I (3) Ze Xu (UC Berkeley) ACP BASCD / 40
21 DFT Polarizability Operator δρ(r) = δr J Fréchet derivative χ(r, r ) := operator. δρ(r) V J δv ion (r (r R J ) dr. ) R J δρ(r) δv ion (r ) is the reducible polarizability Ze Xu (UC Berkeley) ACP BASCD / 40
22 DFT KSDFT Cont. Kohn-Sham equations (W. Kohn and L. Sham 1965) H[ρ]ψ i = ( 12 ) + V[ρ] ψ i = ε i ψ i, (4) ε i energy level; ψ i orbitals; N e ψ i (r)ψ j (r) dr = δ ij, ρ(r) = ψ i (r) 2. (5) index i = 1,..., N e called occupied states; i = N e + 1,... unoccupied states; ε g = ε Ne+1 ε Ne band gap; i=1 V[ρ](r) = V ion (r; {R I }) + v c (r, r )ρ(r ) dr + V xc [ρ](r) V ion = I V I, g J = V J R J. Ze Xu (UC Berkeley) ACP BASCD / 40
23 DFT Sternheimer Equations Q projection onto unoccupied states; Q(ε i H)Qζ ij = Q(ψ i g j ). i = 1,..., N e, j = 1,..., dn a (6) ζ ij defined as the solution to the equation. This is the core part of density-functional perturbation theory (DFPT) (S. Baroni et al. 2001). Ze Xu (UC Berkeley) ACP BASCD / 40
24 DFT How to solve that? Q(ε i H)Qζ ij = Q(ψ i g j ). i = 1,..., N e, j = 1,..., dn a SVD? Frozen phonon approach? (Or finite difference in math) Compression? Ze Xu (UC Berkeley) ACP BASCD / 40
25 DFT How to solve that? cont. Q(ε i H)Qζ ij = Q(ψ i g j ). i = 1,..., N e, j = 1,..., dn a SVD? Frozen phonon approach? (Or finite difference in math) Compression! ACP formulation reduces the computational complexity of phonon calculations from O(N 4 e ) to O(N 3 e ) for the first time (X.et al. 2016). Ze Xu (UC Berkeley) ACP BASCD / 40
26 DFT The Dyson Equation Irreducible polarizability operator χ 0 = δρ δv χ = χ 0 + χ 0 v hxc χ or U = χ 0 G + χ 0 v hxc U, U = χg. (7) So compression of χ 0 can only be done adaptively. Ze Xu (UC Berkeley) ACP BASCD / 40
27 ACP Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
28 ACP Adaptively Compressed Polarizability Operator Q(ε i H)Qζ ij = Q(ψ i g j ). i = 1,..., N e, j = 1,..., dn a Chebyshev interpolation disentangle the energy dependence on the left Interpolative separable density fitting method compress the rhs vectors. Adaptively compressed cost stays the same across iterations. Ze Xu (UC Berkeley) ACP BASCD / 40
29 ACP Chebyshev Interpolation Pick {ε c } I [ε 1, ε Ne ]. Lagrange interpolation N c ζ = ζ c c=1 c c ε ε c. ε c ε c Ze Xu (UC Berkeley) ACP BASCD / 40
30 ACP Interpolative Decomposition M ij = ψ i g j, or M ij (r) = ψ i (r)g j (r). N µ N µ M ij (r) ξ µ (r)m ij (r µ ) ξ µ (r)ψ i (r µ )g j (r µ ). (8) µ=1 µ=1 (H. Cheng, Z. Gimbutas, P. G. Martinsson, and V. Rokhlin, 2005) Ze Xu (UC Berkeley) ACP BASCD / 40
31 ACP Interpolative Separable Density Fitting Two-step procedure: subsampled random Fourier Transform and QR decomposition. (J. Lu and L. Ying, 2015) Ze Xu (UC Berkeley) ACP BASCD / 40
32 ACP Reconstruction To avoid O(Ne 4 ) complexity, construct N e N c W µ = 2 ψ i ε i ε c ζ cµ ψ i (r µ ). (9) ε c ε c i=1 c=1 c c N µ χ 0 g j W µ g j (r µ ), (10) µ=1 or formally, we have χ 0 χ 0 := W Π T. Ze Xu (UC Berkeley) ACP BASCD / 40
33 ACP Iterative scheme Introduce the following change of variable U = Ũ B, B = v 1 hxcg, (11) Iterative scheme: Ũ = χ 0 [Ũ]v hxcũ + B. (12) (a)construct χ k 0[Ũ k ] = W k (Π k ) T ( ) 1 (b)ũ k+1 = I W k (Π k ) T v hxc B (13) = B + W k ( I (Π k ) T v hxc W k) 1 (Π k ) T v hxc B. Ze Xu (UC Berkeley) ACP BASCD / 40
34 Numerical Examples Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
35 Numerical Examples One-dimensional Model ϱd DFPT ACP FD phonon frequency ϱd DFPT ACP FD phonon frequency Figure 4: Phonon spectrum for the 1D systems computed using ACP, DFPT, and FD, for both (a) insulating and (b) semiconducting systems. Ze Xu (UC Berkeley) ACP BASCD / 40
36 Numerical Examples One-dimensional Model cont DFPT ACP FD DFPT ACP FD Time (s) 10 3 Time (s) System size: # of Atom System size: # of Atom Figure 5: Computational time of 1D examples. Comparison among DFPT, ACP, and FD for (a) insulating, and (b) semiconducting systems, respectively. Ze Xu (UC Berkeley) ACP BASCD / 40
37 Numerical Examples Two-dimensional Model occupied unoccupied εi index(i) Figure 6: The electron density ρ of the 2D system with defects (a), and the occupied and unoccupied eigenvalues (b). Ze Xu (UC Berkeley) ACP BASCD / 40
38 Numerical Examples Two-dimensional Model cont DFPT ACP ϱd phonon frequency Figure 7: Phonon spectrum for the 2D system with defects. N A = 69. Ze Xu (UC Berkeley) ACP BASCD / 40
39 What s More? Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
40 What s More? Split Representation of ACP N e χ 0 (r, r ) = 2 i=1 j=n e+1 N e = 2 + N t i=1 j=n e+1 N e i=1 j=n t+1 := χ (1) 0 + χ (2) 0. ψ i (r)ψ j (r)ψ i (r )ψ j (r ) ε i ε j ψ i (r)ψ j (r)ψ i (r )ψ j (r ) ε i ε j ψ i (r)ψ j (r)ψ i (r )ψ j (r ) ε i ε j Ze Xu (UC Berkeley) ACP BASCD / 40
41 What s More? Silicon with 8 Atoms External Perturbation (avg along z-axis) ACP Response (avg along z-axis) Figure 8: External perturbation and response. Ze Xu (UC Berkeley) ACP BASCD / 40
42 What s More? Silicon with 8 Atoms cont. Error of ACP Response (avg along z-axis) #10-8 Error of FD Response (avg along z-axis) 6 # Figure 9: Error on response. Ze Xu (UC Berkeley) ACP BASCD / 40
43 Conclusion Table of Contents 1 What is Phonon? 2 How to Compute? 3 Adaptively Compressed Polarizability Operator 4 Numerical Examples 5 What s More? 6 Conclusion Ze Xu (UC Berkeley) ACP BASCD / 40
44 Conclusion Conclusion ACP formulation reduces the computational complexity of phonon calculations from O(N 4 e ) to O(N 3 e ) for the first time. Recently we extend the formulation to cope with real materials. L. Lin, Z. Xu and L. Ying, Adaptively compressed polarizability operator for accelerating large scale ab initio phonon calculations, SIAM Multiscale Model. Simul. accepted, 2016 Ze Xu (UC Berkeley) ACP BASCD / 40
45 Conclusion Conclusion ACP formulation reduces the computational complexity of phonon calculations from O(N 4 e ) to O(N 3 e ) for the first time. Recently we extend the formulation to cope with real materials. L. Lin, Z. Xu and L. Ying, Adaptively compressed polarizability operator for accelerating large scale ab initio phonon calculations, SIAM Multiscale Model. Simul. accepted, 2016 Thanks for your attention. Ze Xu (UC Berkeley) ACP BASCD / 40
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MULTISCALE MODEL. SIMUL. Vol. 15, No. 1, pp. 29 55 c 2017 Society for Industrial and Applied Mathematics ADAPTIVELY COMPRESSED POLARIZABILITY OPERATOR FOR ACCELERATING LARGE SCALE AB INITIO PHONON CALCULATIONS
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