Searching for Nested Oscillations in Frequency and Sensor Space. Will Penny. Wellcome Trust Centre for Neuroimaging. University College London.

Size: px
Start display at page:

Download "Searching for Nested Oscillations in Frequency and Sensor Space. Will Penny. Wellcome Trust Centre for Neuroimaging. University College London."

Transcription

1 in Frequency and Sensor Space Oscillation Wellcome Trust Centre for Neuroimaging. University College London. Non- Workshop on Non-Invasive Imaging of Nonlinear Interactions. 20th Annual Computational Neuroscience (CNS) Meeting. 28th July 2011, Stockholm

2 Oscillation Oscillation Non- Phase Amplitude Coupling (PAC).

3 Canolty et al (2006) define the modulation index as 1 N M = z[n] N where n=1 z[n] = a γ [n] exp (iφ θ [n]) The significance of M is then assessed using a surrogate data approach. Oscillation Non-

4 Vanhatalo et al. (2004) and Mormann et al. (2005) use the (PLV) between the phase of the lower frequency oscillation and the phase of the amplitude envelope of the higher frequency oscillation 1 PLV = N N exp ( i(φ θ [n] φ aγ [n]) ) n=1 The significance of PLV is then assessed using a surrogate data approach. Oscillation Non-

5 Oscillation Bruns and Eckhorn (2004) define the as ESC = Corr(x θ [n], a γ [n]) The significance of ESC is assessed using t distributions. Non-

6 Penny et al. (2008) use a (GLM) approach based on the multiple regression model a γ = Xβ + e where β are regression coefficients, e is additive Gaussian noise and the design matrix X contains three columns: cos(φ θ [n]) sin(φ θ [n]) A column of 1 s Oscillation Non- Significance is assessed using F-tests over the first two regression coefficients. More generally, X could be a Fourier series.

7 ECoG Data Data from Kai Miller and Jeff Ojemann at Washington State. They collected from subjects performing a one-back visual working memory task. Each item (picture of a house) was presented twice. On the second presentation of the item subjects press a button. On the second presentation the item therefore does nt need to be remembered. On the first presentation it does. We computed PAC measures for each trial between 6Hz theta and high gamma (76 to 200Hz). Oscillation Non- The measures were then Gaussianised for each trial, and we tested for between condition (remember vs not) differences using two sample t-tests at each electrode.

8 ESC and GLM detect nested oscillations that the other measures don t. ECoG Data ESC (top left), GLM (top right), PLV (bottom left), (bottom right). Oscillation Non-

9 ECoG Data Oscillation Non- Current item does not need to be remembered.

10 ECoG Data Oscillation Non- Current item needs to be remembered.

11 A population of Slow GABA-A cells inhibits a population of Fast GABA-A cells. Oscillation Non- Each cell is a single compartment Hodgkin-Huxley model (White et al, 1998).

12 Populations of GABA-B (top,slow) and GABA-A (bottom,fast) cells. Oscillation Non- Fast cells had synaptic rise times of 1ms and fall times of 9ms. For the slow cells they are 5ms and 150ms.

13 Comparison of PAC measures. Oscillation Non- GLM (green), PLV (black), ESC (red), (blue). See Penny et al. (2008) for many further tests.

14 Experimental Paradigm Oscillation Non- of Visual Working Memory (Fuentemilla et al. 2010).

15 Multivariate Analysis at Encoding Oscillation Non- Multivariate classification based on sensor space spectra using features from 13 to 80 Hz.

16 Multivariate Classification of Maintenance Oscillation Non- Greater replay during memory conditions.

17 Replay is Phase-Locked to Theta Theta activity was then projected to source space, and for each source, Poch et al. (2011) computed the phases at which patterns were replayed. To see if these phases were non-uniformly distributed, a PLV measure was computed for each source. Poch et al. (2011) then tested to see which sources had PLVs that predicted of memory performance. This identified a right hippocampal and a right inferior frontal region. Oscillation Non-

18 Theta Sources Oscillation Non-

19 Theta Sources Oscillation Non-

20 Processing Stream Extract phase of theta activity in source region. Extract time-frequency maps at each sensor, v, from frequencies f = 16 : 4 : 128 Hz during delay period. For each trial compute GLM PAC measure. Record fitted regression coefficients s fv and c fv. The sine and cosine terms for each frequency and sensor Create a NIFTI format image for each measure. There are 3 conditions and 40 trials per condition, with 2 measures per trial. This gives 240 data points per subject Set up design matrix in SPM and implement a GLM analysis in space-frequency Litvak et al, 2010) Use Random Field Theory to correct for multiple comparisons Oscillation Non-

21 Images are entered in the following order Sine coefficients for Sine coefficients for Non-Config Sine coefficients for Config Cos coefficients for Cos coefficients for Non-Config Cos coefficients for Config Oscillation Non-

22 Oscillation Non-

23 The statistical signifiance of phase amplitude coupling is corrected for the multiple comparisons over space and frequency using Random Field Theory. Oscillation Non- We can use the standard threshold eg FWE=0.05.

24 Non- Oscillation Non-

25 Non- Oscillation Non-

26 Non- Oscillation Non-

27 Oscillation Non-

28 Oscillation Non-

29 Oscillation Non-

30 G. Buzsaki (2006) Rhythms of the Brain. Oxford University Press. R. Canolty et al (2006) High gamma power is phase-locked to theta oscillations in neocortex. Science 313, L. Fuentemilla et al (2010) Theta-coupled periodic replay in working memory. Current Biology 20, 1-7. V. Litvak et al. (2011) EEG and MEG data analysis in SPM8. Comput Intell Neurosci. Article ID: K. Miller et al. (2009) Power-Law Scaling in the Brain Surface Electric Potential. PLoS CB, 5(12):e F. Mormann et al. (2005) Phase/amplitude reset and theta-gamma interaction in the human medial temporal lobe. Hippocampus 15: W. Penny et al (2008) Testing for Oscillation. Journal of Neuroscience Methods, 174, C. Poch et al (2011) theta-phase modulation of replay correlates with configural-relational short-term memory performance. Journal of Neuroscience, 31(19): S. Vanhatalo et al. (2004) Infraslow oscillations modulate excitability and interictal activity in the human cortex during sleep. PNAS 101(14): Oscillation Non- J. White et al. (2000) s of interneurons with fast and slow GABA-A kinetics. Proc Natl Acad Sci USA, 97(14):

Consider the following spike trains from two different neurons N1 and N2:

Consider the following spike trains from two different neurons N1 and N2: About synchrony and oscillations So far, our discussions have assumed that we are either observing a single neuron at a, or that neurons fire independent of each other. This assumption may be correct in

More information

A Multivariate Time-Frequency Based Phase Synchrony Measure for Quantifying Functional Connectivity in the Brain

A Multivariate Time-Frequency Based Phase Synchrony Measure for Quantifying Functional Connectivity in the Brain A Multivariate Time-Frequency Based Phase Synchrony Measure for Quantifying Functional Connectivity in the Brain Dr. Ali Yener Mutlu Department of Electrical and Electronics Engineering, Izmir Katip Celebi

More information

Statistical inference for MEG

Statistical inference for MEG Statistical inference for MEG Vladimir Litvak Wellcome Trust Centre for Neuroimaging University College London, UK MEG-UK 2014 educational day Talk aims Show main ideas of common methods Explain some of

More information

Dynamic Causal Modelling for EEG and MEG. Stefan Kiebel

Dynamic Causal Modelling for EEG and MEG. Stefan Kiebel Dynamic Causal Modelling for EEG and MEG Stefan Kiebel Overview 1 M/EEG analysis 2 Dynamic Causal Modelling Motivation 3 Dynamic Causal Modelling Generative model 4 Bayesian inference 5 Applications Overview

More information

New Machine Learning Methods for Neuroimaging

New Machine Learning Methods for Neuroimaging New Machine Learning Methods for Neuroimaging Gatsby Computational Neuroscience Unit University College London, UK Dept of Computer Science University of Helsinki, Finland Outline Resting-state networks

More information

Recipes for the Linear Analysis of EEG and applications

Recipes for the Linear Analysis of EEG and applications Recipes for the Linear Analysis of EEG and applications Paul Sajda Department of Biomedical Engineering Columbia University Can we read the brain non-invasively and in real-time? decoder 1001110 if YES

More information

Exercises. Chapter 1. of τ approx that produces the most accurate estimate for this firing pattern.

Exercises. Chapter 1. of τ approx that produces the most accurate estimate for this firing pattern. 1 Exercises Chapter 1 1. Generate spike sequences with a constant firing rate r 0 using a Poisson spike generator. Then, add a refractory period to the model by allowing the firing rate r(t) to depend

More information

Dynamic Causal Modelling for EEG and MEG

Dynamic Causal Modelling for EEG and MEG Dynamic Causal Modelling for EEG and MEG Stefan Kiebel Ma Planck Institute for Human Cognitive and Brain Sciences Leipzig, Germany Overview 1 M/EEG analysis 2 Dynamic Causal Modelling Motivation 3 Dynamic

More information

A Canonical Circuit for Generating Phase-Amplitude Coupling

A Canonical Circuit for Generating Phase-Amplitude Coupling A Canonical Circuit for Generating Phase-Amplitude Coupling Angela C. E. Onslow 1,2 *, Matthew W. Jones 3, Rafal Bogacz 4,5,6 1 Bristol Centre for Complexity Sciences (B.C.C.S.), University of Bristol,

More information

Principles of DCM. Will Penny. 26th May Principles of DCM. Will Penny. Introduction. Differential Equations. Bayesian Estimation.

Principles of DCM. Will Penny. 26th May Principles of DCM. Will Penny. Introduction. Differential Equations. Bayesian Estimation. 26th May 2011 Dynamic Causal Modelling Dynamic Causal Modelling is a framework studying large scale brain connectivity by fitting differential equation models to brain imaging data. DCMs differ in their

More information

Event-related fmri. Christian Ruff. Laboratory for Social and Neural Systems Research Department of Economics University of Zurich

Event-related fmri. Christian Ruff. Laboratory for Social and Neural Systems Research Department of Economics University of Zurich Event-related fmri Christian Ruff Laboratory for Social and Neural Systems Research Department of Economics University of Zurich Institute of Neurology University College London With thanks to the FIL

More information

NeuroImage 54 (2011) Contents lists available at ScienceDirect. NeuroImage. journal homepage:

NeuroImage 54 (2011) Contents lists available at ScienceDirect. NeuroImage. journal homepage: NeuroImage 54 (211) 836 85 Contents lists available at ScienceDirect NeuroImage journal homepage: www.elsevier.com/locate/ynimg Spatially distributed patterns of oscillatory coupling between high-frequency

More information

The General Linear Model. Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London

The General Linear Model. Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London The General Linear Model Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London SPM Course Lausanne, April 2012 Image time-series Spatial filter Design matrix Statistical Parametric

More information

Techniques to Estimate Brain Connectivity from Measurements with Low Spatial Resolution

Techniques to Estimate Brain Connectivity from Measurements with Low Spatial Resolution Techniques to Estimate Brain Connectivity from Measurements with Low Spatial Resolution 1. What is coherence? 2. The problem of volume conduction 3. Recent developments G. Nolte Dept. of Neurophysiology

More information

Modelling temporal structure (in noise and signal)

Modelling temporal structure (in noise and signal) Modelling temporal structure (in noise and signal) Mark Woolrich, Christian Beckmann*, Salima Makni & Steve Smith FMRIB, Oxford *Imperial/FMRIB temporal noise: modelling temporal autocorrelation temporal

More information

Frequency of gamma oscillations routes flow of information in the hippocampus

Frequency of gamma oscillations routes flow of information in the hippocampus Vol 46 9 November 9 doi:.38/nature8573 LETTERS Frequency of gamma oscillations routes flow of information in the hippocampus Laura Lee Colgin, Tobias Denninger {, Marianne Fyhn {, Torkel Hafting {, Tora

More information

Dynamic Causal Modelling for fmri

Dynamic Causal Modelling for fmri Dynamic Causal Modelling for fmri André Marreiros Friday 22 nd Oct. 2 SPM fmri course Wellcome Trust Centre for Neuroimaging London Overview Brain connectivity: types & definitions Anatomical connectivity

More information

Synchrony in Neural Systems: a very brief, biased, basic view

Synchrony in Neural Systems: a very brief, biased, basic view Synchrony in Neural Systems: a very brief, biased, basic view Tim Lewis UC Davis NIMBIOS Workshop on Synchrony April 11, 2011 components of neuronal networks neurons synapses connectivity cell type - intrinsic

More information

Bayesian inference J. Daunizeau

Bayesian inference J. Daunizeau Bayesian inference J. Daunizeau Brain and Spine Institute, Paris, France Wellcome Trust Centre for Neuroimaging, London, UK Overview of the talk 1 Probabilistic modelling and representation of uncertainty

More information

Data analysis methods in the neuroscience Zoltán Somogyvári

Data analysis methods in the neuroscience Zoltán Somogyvári Data analysis methods in the neuroscience Zoltán Somogyvári Wigner Research Centre for Physics of the Hungarian Academy of Sciences Methods applicable to one time series The Fourier transformation The

More information

Model Comparison. Course on Bayesian Inference, WTCN, UCL, February Model Comparison. Bayes rule for models. Linear Models. AIC and BIC.

Model Comparison. Course on Bayesian Inference, WTCN, UCL, February Model Comparison. Bayes rule for models. Linear Models. AIC and BIC. Course on Bayesian Inference, WTCN, UCL, February 2013 A prior distribution over model space p(m) (or hypothesis space ) can be updated to a posterior distribution after observing data y. This is implemented

More information

The General Linear Model (GLM)

The General Linear Model (GLM) he General Linear Model (GLM) Klaas Enno Stephan ranslational Neuromodeling Unit (NU) Institute for Biomedical Engineering University of Zurich & EH Zurich Wellcome rust Centre for Neuroimaging Institute

More information

Marr's Theory of the Hippocampus: Part I

Marr's Theory of the Hippocampus: Part I Marr's Theory of the Hippocampus: Part I Computational Models of Neural Systems Lecture 3.3 David S. Touretzky October, 2015 David Marr: 1945-1980 10/05/15 Computational Models of Neural Systems 2 Marr

More information

Wellcome Trust Centre for Neuroimaging, UCL, UK.

Wellcome Trust Centre for Neuroimaging, UCL, UK. Bayesian Inference Will Penny Wellcome Trust Centre for Neuroimaging, UCL, UK. SPM Course, Virginia Tech, January 2012 What is Bayesian Inference? (From Daniel Wolpert) Bayesian segmentation and normalisation

More information

Bayesian inference J. Daunizeau

Bayesian inference J. Daunizeau Bayesian inference J. Daunizeau Brain and Spine Institute, Paris, France Wellcome Trust Centre for Neuroimaging, London, UK Overview of the talk 1 Probabilistic modelling and representation of uncertainty

More information

HST 583 FUNCTIONAL MAGNETIC RESONANCE IMAGING DATA ANALYSIS AND ACQUISITION A REVIEW OF STATISTICS FOR FMRI DATA ANALYSIS

HST 583 FUNCTIONAL MAGNETIC RESONANCE IMAGING DATA ANALYSIS AND ACQUISITION A REVIEW OF STATISTICS FOR FMRI DATA ANALYSIS HST 583 FUNCTIONAL MAGNETIC RESONANCE IMAGING DATA ANALYSIS AND ACQUISITION A REVIEW OF STATISTICS FOR FMRI DATA ANALYSIS EMERY N. BROWN AND CHRIS LONG NEUROSCIENCE STATISTICS RESEARCH LABORATORY DEPARTMENT

More information

PERFORMANCE STUDY OF CAUSALITY MEASURES

PERFORMANCE STUDY OF CAUSALITY MEASURES PERFORMANCE STUDY OF CAUSALITY MEASURES T. Bořil, P. Sovka Department of Circuit Theory, Faculty of Electrical Engineering, Czech Technical University in Prague Abstract Analysis of dynamic relations in

More information

Patterns, Memory and Periodicity in Two-Neuron Delayed Recurrent Inhibitory Loops

Patterns, Memory and Periodicity in Two-Neuron Delayed Recurrent Inhibitory Loops Math. Model. Nat. Phenom. Vol. 5, No. 2, 2010, pp. 67-99 DOI: 10.1051/mmnp/20105203 Patterns, Memory and Periodicity in Two-Neuron Delayed Recurrent Inhibitory Loops J. Ma 1 and J. Wu 2 1 Department of

More information

Effective Connectivity & Dynamic Causal Modelling

Effective Connectivity & Dynamic Causal Modelling Effective Connectivity & Dynamic Causal Modelling Hanneke den Ouden Donders Centre for Cognitive Neuroimaging Radboud University Nijmegen Advanced SPM course Zurich, Februari 13-14, 2014 Functional Specialisation

More information

Rhythms in the gamma range (30 80 Hz) and the beta range

Rhythms in the gamma range (30 80 Hz) and the beta range Gamma rhythms and beta rhythms have different synchronization properties N. Kopell, G. B. Ermentrout, M. A. Whittington, and R. D. Traub Department of Mathematics and Center for BioDynamics, Boston University,

More information

Causality and communities in neural networks

Causality and communities in neural networks Causality and communities in neural networks Leonardo Angelini, Daniele Marinazzo, Mario Pellicoro, Sebastiano Stramaglia TIRES-Center for Signal Detection and Processing - Università di Bari, Bari, Italy

More information

Causal modeling of fmri: temporal precedence and spatial exploration

Causal modeling of fmri: temporal precedence and spatial exploration Causal modeling of fmri: temporal precedence and spatial exploration Alard Roebroeck Maastricht Brain Imaging Center (MBIC) Faculty of Psychology & Neuroscience Maastricht University Intro: What is Brain

More information

Analyzing Anatomical and Functional Brain Connectivity. - M/EEG Functional and Resting-State Connectivity Maren Grigutsch

Analyzing Anatomical and Functional Brain Connectivity. - M/EEG Functional and Resting-State Connectivity Maren Grigutsch Analyzing Anatomical and Functional Brain Connectivity - M/EEG Functional and Resting-State Connectivity Maren Grigutsch Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig Functional

More information

Experimental design of fmri studies & Resting-State fmri

Experimental design of fmri studies & Resting-State fmri Methods & Models for fmri Analysis 2016 Experimental design of fmri studies & Resting-State fmri Sandra Iglesias With many thanks for slides & images to: Klaas Enno Stephan, FIL Methods group, Christian

More information

Experimental design of fmri studies

Experimental design of fmri studies Methods & Models for fmri Analysis 2017 Experimental design of fmri studies Sara Tomiello With many thanks for slides & images to: Sandra Iglesias, Klaas Enno Stephan, FIL Methods group, Christian Ruff

More information

Statistical Inference

Statistical Inference Statistical Inference Jean Daunizeau Wellcome rust Centre for Neuroimaging University College London SPM Course Edinburgh, April 2010 Image time-series Spatial filter Design matrix Statistical Parametric

More information

Experimental design of fmri studies

Experimental design of fmri studies Experimental design of fmri studies Sandra Iglesias With many thanks for slides & images to: Klaas Enno Stephan, FIL Methods group, Christian Ruff SPM Course 2015 Overview of SPM Image time-series Kernel

More information

Will Penny. 21st April The Macroscopic Brain. Will Penny. Cortical Unit. Spectral Responses. Macroscopic Models. Steady-State Responses

Will Penny. 21st April The Macroscopic Brain. Will Penny. Cortical Unit. Spectral Responses. Macroscopic Models. Steady-State Responses The The 21st April 2011 Jansen and Rit (1995), building on the work of Lopes Da Sliva and others, developed a biologically inspired model of EEG activity. It was originally developed to explain alpha activity

More information

Beyond Univariate Analyses: Multivariate Modeling of Functional Neuroimaging Data

Beyond Univariate Analyses: Multivariate Modeling of Functional Neuroimaging Data Beyond Univariate Analyses: Multivariate Modeling of Functional Neuroimaging Data F. DuBois Bowman Department of Biostatistics and Bioinformatics Center for Biomedical Imaging Statistics Emory University,

More information

Approximate, not perfect synchrony maximizes the downstream effectiveness of excitatory neuronal ensembles

Approximate, not perfect synchrony maximizes the downstream effectiveness of excitatory neuronal ensembles Börgers et al. RESEARCH Approximate, not perfect synchrony maximizes the downstream effectiveness of excitatory neuronal ensembles Christoph Börgers *, Jie Li and Nancy Kopell 2 * Correspondence: cborgers@tufts.edu

More information

Collecting the data. A.- F. Miller 2012 DQF- COSY Demo 1

Collecting the data. A.- F. Miller 2012 DQF- COSY Demo 1 A.- F. Miller 2012 DQF- COSY Demo 1 gradient Double-Quantum-Filtered COSY (gdqf-cosy) This spectrum produces cross peaks exclusively between 1 Hs that are connected through bonds, usually 3 or less. (Exceptions

More information

arxiv: v4 [stat.me] 27 Nov 2017

arxiv: v4 [stat.me] 27 Nov 2017 CLASSIFICATION OF LOCAL FIELD POTENTIALS USING GAUSSIAN SEQUENCE MODEL Taposh Banerjee John Choi Bijan Pesaran Demba Ba and Vahid Tarokh School of Engineering and Applied Sciences, Harvard University Center

More information

Electroencephalogram Based Causality Graph Analysis in Behavior Tasks of Parkinson s Disease Patients

Electroencephalogram Based Causality Graph Analysis in Behavior Tasks of Parkinson s Disease Patients University of Denver Digital Commons @ DU Electronic Theses and Dissertations Graduate Studies 1-1-2015 Electroencephalogram Based Causality Graph Analysis in Behavior Tasks of Parkinson s Disease Patients

More information

Spatial Cells in the Hippocampal Formation

Spatial Cells in the Hippocampal Formation Spatial Cells in the Hippocampal Formation John O Keefe University College London Nobel Prize Lecture Stockholm 7 December 2014 Henry Molaison 1926-2008 Suzanne Corkin Brenda Milner He cannot recall anything

More information

The ASL signal. Parenchy mal signal. Venous signal. Arterial signal. Input Function (Label) Dispersion: (t e -kt ) Relaxation: (e -t/t1a )

The ASL signal. Parenchy mal signal. Venous signal. Arterial signal. Input Function (Label) Dispersion: (t e -kt ) Relaxation: (e -t/t1a ) Lecture Goals Other non-bold techniques (T2 weighted, Mn contrast agents, SSFP, Dynamic Diffusion, ASL) Understand Basic Principles in Spin labeling : spin inversion, flow vs. perfusion ASL variations

More information

The Mixed States of Associative Memories Realize Unimodal Distribution of Dominance Durations in Multistable Perception

The Mixed States of Associative Memories Realize Unimodal Distribution of Dominance Durations in Multistable Perception The Mixed States of Associative Memories Realize Unimodal Distribution of Dominance Durations in Multistable Perception Takashi Kanamaru Department of Mechanical Science and ngineering, School of Advanced

More information

Experimental design of fmri studies

Experimental design of fmri studies Experimental design of fmri studies Zurich SPM Course 2016 Sandra Iglesias Translational Neuromodeling Unit (TNU) Institute for Biomedical Engineering (IBT) University and ETH Zürich With many thanks for

More information

Gamma and Theta Rhythms in Biophysical Models of Hippocampal Circuits

Gamma and Theta Rhythms in Biophysical Models of Hippocampal Circuits Gamma and Theta Rhythms in Biophysical Models of Hippocampal Circuits N. Kopell, C. Börgers, D. Pervouchine, P. Malerba, and A. Tort Introduction The neural circuits of the hippocampus are extremely complex,

More information

Part 2: Multivariate fmri analysis using a sparsifying spatio-temporal prior

Part 2: Multivariate fmri analysis using a sparsifying spatio-temporal prior Chalmers Machine Learning Summer School Approximate message passing and biomedicine Part 2: Multivariate fmri analysis using a sparsifying spatio-temporal prior Tom Heskes joint work with Marcel van Gerven

More information

Decision-making and Weber s law: a neurophysiological model

Decision-making and Weber s law: a neurophysiological model European Journal of Neuroscience, Vol. 24, pp. 901 916, 2006 doi:10.1111/j.14-9568.2006.04940.x Decision-making and Weber s law: a neurophysiological model Gustavo Deco 1 and Edmund T. Rolls 2 1 Institucio

More information

Morphometry. John Ashburner. Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK.

Morphometry. John Ashburner. Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK. Morphometry John Ashburner Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK. Morphometry is defined as: Measurement of the form of organisms or of their parts. The American Heritage

More information

arxiv:physics/ v1 [physics.bio-ph] 19 Feb 1999

arxiv:physics/ v1 [physics.bio-ph] 19 Feb 1999 Odor recognition and segmentation by coupled olfactory bulb and cortical networks arxiv:physics/9902052v1 [physics.bioph] 19 Feb 1999 Abstract Zhaoping Li a,1 John Hertz b a CBCL, MIT, Cambridge MA 02139

More information

Dynamic Causal Modelling for EEG/MEG: principles J. Daunizeau

Dynamic Causal Modelling for EEG/MEG: principles J. Daunizeau Dynamic Causal Modelling for EEG/MEG: principles J. Daunizeau Motivation, Brain and Behaviour group, ICM, Paris, France Overview 1 DCM: introduction 2 Dynamical systems theory 3 Neural states dynamics

More information

Detection of spike patterns using pattern ltering, with applications to sleep replay in birdsong

Detection of spike patterns using pattern ltering, with applications to sleep replay in birdsong Neurocomputing 52 54 (2003) 19 24 www.elsevier.com/locate/neucom Detection of spike patterns using pattern ltering, with applications to sleep replay in birdsong Zhiyi Chi a;, Peter L. Rauske b, Daniel

More information

Neural Nets in PR. Pattern Recognition XII. Michal Haindl. Outline. Neural Nets in PR 2

Neural Nets in PR. Pattern Recognition XII. Michal Haindl. Outline. Neural Nets in PR 2 Neural Nets in PR NM P F Outline Motivation: Pattern Recognition XII human brain study complex cognitive tasks Michal Haindl Faculty of Information Technology, KTI Czech Technical University in Prague

More information

Morphometrics with SPM12

Morphometrics with SPM12 Morphometrics with SPM12 John Ashburner Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK. What kind of differences are we looking for? Usually, we try to localise regions of difference.

More information

2.3 Oscillation. The harmonic oscillator equation is the differential equation. d 2 y dt 2 r y (r > 0). Its solutions have the form

2.3 Oscillation. The harmonic oscillator equation is the differential equation. d 2 y dt 2 r y (r > 0). Its solutions have the form 2. Oscillation So far, we have used differential equations to describe functions that grow or decay over time. The next most common behavior for a function is to oscillate, meaning that it increases and

More information

Synaptic dynamics. John D. Murray. Synaptic currents. Simple model of the synaptic gating variable. First-order kinetics

Synaptic dynamics. John D. Murray. Synaptic currents. Simple model of the synaptic gating variable. First-order kinetics Synaptic dynamics John D. Murray A dynamical model for synaptic gating variables is presented. We use this to study the saturation of synaptic gating at high firing rate. Shunting inhibition and the voltage

More information

Songting Li. Applied Mathematics, Mathematical and Computational Neuroscience, Biophysics

Songting Li. Applied Mathematics, Mathematical and Computational Neuroscience, Biophysics Songting Li Contact Information Phone: +1-917-930-3505 email: songting@cims.nyu.edu homepage: http://www.cims.nyu.edu/ songting/ Address: Courant Institute, 251 Mercer Street, New York, NY, United States,

More information

A. Motivation To motivate the analysis of variance framework, we consider the following example.

A. Motivation To motivate the analysis of variance framework, we consider the following example. 9.07 ntroduction to Statistics for Brain and Cognitive Sciences Emery N. Brown Lecture 14: Analysis of Variance. Objectives Understand analysis of variance as a special case of the linear model. Understand

More information

Morphometrics with SPM12

Morphometrics with SPM12 Morphometrics with SPM12 John Ashburner Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK. What kind of differences are we looking for? Usually, we try to localise regions of difference.

More information

Figure 1-figure supplement 1

Figure 1-figure supplement 1 Figure 1-figure supplement 1 a 1 Stroop Task b 1 Reading Task 8 8 Percent Correct 6 4 2 Percent Correct 6 4 2 c 1 2 3 4 5 6 7 8 9 1 11 12 13 14 15 Subject Number d 1 2 3 4 5 6 7 8 9 1 11 12 13 14 15 Subject

More information

Detecting event-related changes of multivariate phase coupling in dynamic brain networks

Detecting event-related changes of multivariate phase coupling in dynamic brain networks J Neurophysiol 107: 2020 2031, 2012. First published January 12, 2011; doi:10.1152/jn.00610.2011. Detecting event-related changes of multivariate phase coupling in dynamic brain networks Ryan T. Canolty,

More information

Mutual Information in Frequency and its Application to Measure Cross-Frequency Coupling in Epilepsy

Mutual Information in Frequency and its Application to Measure Cross-Frequency Coupling in Epilepsy Mutual Information in Frequency and its Application to Measure Cross-Frequency Coupling in Epilepsy Rakesh Malladi, Member, IEEE, Don H Johnson, Fellow, IEEE, Giridhar P Kalamangalam, Nitin Tandon, and

More information

!) + log(t) # n i. The last two terms on the right hand side (RHS) are clearly independent of θ and can be

!) + log(t) # n i. The last two terms on the right hand side (RHS) are clearly independent of θ and can be Supplementary Materials General case: computing log likelihood We first describe the general case of computing the log likelihood of a sensory parameter θ that is encoded by the activity of neurons. Each

More information

LINEAR SYSTEMS. J. Elder PSYC 6256 Principles of Neural Coding

LINEAR SYSTEMS. J. Elder PSYC 6256 Principles of Neural Coding LINEAR SYSTEMS Linear Systems 2 Neural coding and cognitive neuroscience in general concerns input-output relationships. Inputs Light intensity Pre-synaptic action potentials Number of items in display

More information

A MULTIVARIATE TIME-FREQUENCY BASED PHASE SYNCHRONY MEASURE AND APPLICATIONS TO DYNAMIC BRAIN NETWORK ANALYSIS. Ali Yener Mutlu

A MULTIVARIATE TIME-FREQUENCY BASED PHASE SYNCHRONY MEASURE AND APPLICATIONS TO DYNAMIC BRAIN NETWORK ANALYSIS. Ali Yener Mutlu A MULTIVARIATE TIME-FREQUENCY BASED PHASE SYNCHRONY MEASURE AND APPLICATIONS TO DYNAMIC BRAIN NETWORK ANALYSIS By Ali Yener Mutlu A DISSERTATION Submitted to Michigan State University in partial fulfillment

More information

How do biological neurons learn? Insights from computational modelling of

How do biological neurons learn? Insights from computational modelling of How do biological neurons learn? Insights from computational modelling of neurobiological experiments Lubica Benuskova Department of Computer Science University of Otago, New Zealand Brain is comprised

More information

The Multivariate Gaussian Distribution

The Multivariate Gaussian Distribution 9.07 INTRODUCTION TO STATISTICS FOR BRAIN AND COGNITIVE SCIENCES Lecture 4 Emery N. Brown The Multivariate Gaussian Distribution Analysis of Background Magnetoencephalogram Noise Courtesy of Simona Temereanca

More information

Conductance-Based Integrate-and-Fire Models

Conductance-Based Integrate-and-Fire Models NOTE Communicated by Michael Hines Conductance-Based Integrate-and-Fire Models Alain Destexhe Department of Physiology, Laval University School of Medicine, Québec, G1K 7P4, Canada A conductance-based

More information

Will Penny. SPM short course for M/EEG, London 2013

Will Penny. SPM short course for M/EEG, London 2013 SPM short course for M/EEG, London 2013 Ten Simple Rules Stephan et al. Neuroimage, 2010 Model Structure Bayes rule for models A prior distribution over model space p(m) (or hypothesis space ) can be updated

More information

Nature Neuroscience: doi: /nn Supplementary Figure 1. Localization of responses

Nature Neuroscience: doi: /nn Supplementary Figure 1. Localization of responses Supplementary Figure 1 Localization of responses a. For each subject, we classified neural activity using an electrode s response to a localizer task (see Experimental Procedures). Auditory (green), indicates

More information

Estimation of Propagating Phase Transients in EEG Data - Application of Dynamic Logic Neural Modeling Approach

Estimation of Propagating Phase Transients in EEG Data - Application of Dynamic Logic Neural Modeling Approach Proceedings of International Joint Conference on Neural Networks, Orlando, Florida, USA, August 12-17, 2007 Estimation of Propagating Phase Transients in EEG Data - Application of Dynamic Logic Neural

More information

Old and New Methods in the Age of Big Data

Old and New Methods in the Age of Big Data Old and New Methods in the Age of Big Data Zoltán Somogyvári1,2 1Department of Theory Wigner Research Center for Physics of the Hungarian Academy of Sciences 2National Institute for Clinical Neuroscience

More information

The Damped Pendulum. Physics 211 Lab 3 3/18/2016

The Damped Pendulum. Physics 211 Lab 3 3/18/2016 PHYS11 Lab 3 Physics 11 Lab 3 3/18/16 Objective The objective of this lab is to record the angular position of the pendulum vs. time with and without damping. The data is then analyzed and compared to

More information

Temporal Neuronal Oscillations can Produce Spatial Phase Codes

Temporal Neuronal Oscillations can Produce Spatial Phase Codes See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/237845243 Temporal Neuronal Oscillations can Produce Spatial Phase Codes Chapter in Attention

More information

Fundamentals of Computational Neuroscience 2e

Fundamentals of Computational Neuroscience 2e Fundamentals of Computational Neuroscience 2e January 1, 2010 Chapter 10: The cognitive brain Hierarchical maps and attentive vision A. Ventral visual pathway B. Layered cortical maps Receptive field size

More information

Neuronal Shot Noise and Brownian 1/f 2 Behavior in the Local Field Potential

Neuronal Shot Noise and Brownian 1/f 2 Behavior in the Local Field Potential Neuronal Shot Noise and Brownian 1/f 2 Behavior in the Joshua Milstein 1 *, Florian Mormann 1,2, Itzhak Fried 2,3, Christof Koch 1 1 California Institute of Technology, Pasadena, California, United States

More information

Learning from Data: Regression

Learning from Data: Regression November 3, 2005 http://www.anc.ed.ac.uk/ amos/lfd/ Classification or Regression? Classification: want to learn a discrete target variable. Regression: want to learn a continuous target variable. Linear

More information

Tracking whole-brain connectivity dynamics in the resting-state

Tracking whole-brain connectivity dynamics in the resting-state Tracking whole-brain connectivity dynamics in the resting-state Supplementary Table. Peak Coordinates of ICNs ICN regions BA t max Peak (mm) (continued) BA t max Peak (mm) X Y Z X Y Z Subcortical networks

More information

An Introductory Course in Computational Neuroscience

An Introductory Course in Computational Neuroscience An Introductory Course in Computational Neuroscience Contents Series Foreword Acknowledgments Preface 1 Preliminary Material 1.1. Introduction 1.1.1 The Cell, the Circuit, and the Brain 1.1.2 Physics of

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/319/5869/1543/dc1 Supporting Online Material for Synaptic Theory of Working Memory Gianluigi Mongillo, Omri Barak, Misha Tsodyks* *To whom correspondence should be addressed.

More information

M/EEG source analysis

M/EEG source analysis Jérémie Mattout Lyon Neuroscience Research Center Will it ever happen that mathematicians will know enough about the physiology of the brain, and neurophysiologists enough of mathematical discovery, for

More information

CORRELATION TRANSFER FROM BASAL GANGLIA TO THALAMUS IN PARKINSON S DISEASE. by Pamela Reitsma. B.S., University of Maine, 2007

CORRELATION TRANSFER FROM BASAL GANGLIA TO THALAMUS IN PARKINSON S DISEASE. by Pamela Reitsma. B.S., University of Maine, 2007 CORRELATION TRANSFER FROM BASAL GANGLIA TO THALAMUS IN PARKINSON S DISEASE by Pamela Reitsma B.S., University of Maine, 27 Submitted to the Graduate Faculty of the Department of Mathematics in partial

More information

How to read a burst duration code

How to read a burst duration code Neurocomputing 58 60 (2004) 1 6 www.elsevier.com/locate/neucom How to read a burst duration code Adam Kepecs a;, John Lisman b a Cold Spring Harbor Laboratory, Marks Building, 1 Bungtown Road, Cold Spring

More information

A realistic neocortical axonal plexus model has implications for neocortical processing and temporal lobe epilepsy

A realistic neocortical axonal plexus model has implications for neocortical processing and temporal lobe epilepsy A realistic neocortical axonal plexus model has implications for neocortical processing and temporal lobe epilepsy Neocortical Pyramidal Cells Can Send Signals to Post-Synaptic Cells Without Firing Erin

More information

Nature Neuroscience: doi: /nn.2283

Nature Neuroscience: doi: /nn.2283 Supplemental Material for NN-A2678-T Phase-to-rate transformations encode touch in cortical neurons of a scanning sensorimotor system by John Curtis and David Kleinfeld Figure S. Overall distribution of

More information

How Spike Generation Mechanisms Determine the Neuronal Response to Fluctuating Inputs

How Spike Generation Mechanisms Determine the Neuronal Response to Fluctuating Inputs 628 The Journal of Neuroscience, December 7, 2003 23(37):628 640 Behavioral/Systems/Cognitive How Spike Generation Mechanisms Determine the Neuronal Response to Fluctuating Inputs Nicolas Fourcaud-Trocmé,

More information

Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting

Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting Eugene M. Izhikevich The MIT Press Cambridge, Massachusetts London, England Contents Preface xv 1 Introduction 1 1.1 Neurons

More information

Jean-Baptiste Poline

Jean-Baptiste Poline Edinburgh course Avril 2010 Linear Models Contrasts Variance components Jean-Baptiste Poline Neurospin, I2BM, CEA Saclay, France Credits: Will Penny, G. Flandin, SPM course authors Outline Part I: Linear

More information

ICA [6] ICA) [7, 8] ICA ICA ICA [9, 10] J-F. Cardoso. [13] Matlab ICA. Comon[3], Amari & Cardoso[4] ICA ICA

ICA [6] ICA) [7, 8] ICA ICA ICA [9, 10] J-F. Cardoso. [13] Matlab ICA. Comon[3], Amari & Cardoso[4] ICA ICA 16 1 (Independent Component Analysis: ICA) 198 9 ICA ICA ICA 1 ICA 198 Jutten Herault Comon[3], Amari & Cardoso[4] ICA Comon (PCA) projection persuit projection persuit ICA ICA ICA 1 [1] [] ICA ICA EEG

More information

COMP 546. Lecture 21. Cochlea to brain, Source Localization. Tues. April 3, 2018

COMP 546. Lecture 21. Cochlea to brain, Source Localization. Tues. April 3, 2018 COMP 546 Lecture 21 Cochlea to brain, Source Localization Tues. April 3, 2018 1 Ear pinna auditory canal cochlea outer middle inner 2 Eye Ear Lens? Retina? Photoreceptors (light -> chemical) Ganglion cells

More information

Dynamical systems in neuroscience. Pacific Northwest Computational Neuroscience Connection October 1-2, 2010

Dynamical systems in neuroscience. Pacific Northwest Computational Neuroscience Connection October 1-2, 2010 Dynamical systems in neuroscience Pacific Northwest Computational Neuroscience Connection October 1-2, 2010 What do I mean by a dynamical system? Set of state variables Law that governs evolution of state

More information

Data Analysis I: Single Subject

Data Analysis I: Single Subject Data Analysis I: Single Subject ON OFF he General Linear Model (GLM) y= X fmri Signal = Design Matrix our data = what we CAN explain x β x Betas + + how much x of it we CAN + explain ε Residuals what

More information

Gamma-band synchronization in the neocortex: novel analysis methods and their application to sensory and motivational systems Vinck, M.A.

Gamma-band synchronization in the neocortex: novel analysis methods and their application to sensory and motivational systems Vinck, M.A. UvA-DARE (Digital Academic Repository) Gamma-band synchronization in the neocortex: novel analysis methods and their application to sensory and motivational systems Vinck, M.A. Link to publication Citation

More information

RECOGNITION ALGORITHM FOR DEVELOPING A BRAIN- COMPUTER INTERFACE USING FUNCTIONAL NEAR INFRARED SPECTROSCOPY

RECOGNITION ALGORITHM FOR DEVELOPING A BRAIN- COMPUTER INTERFACE USING FUNCTIONAL NEAR INFRARED SPECTROSCOPY The 212 International Conference on Green Technology and Sustainable Development (GTSD212) RECOGNITION ALGORITHM FOR DEVELOPING A BRAIN- COMPUTER INTERFACE USING FUNCTIONAL NEAR INFRARED SPECTROSCOPY Cuong

More information

Dynamic Modeling of Brain Activity

Dynamic Modeling of Brain Activity 0a Dynamic Modeling of Brain Activity EIN IIN PC Thomas R. Knösche, Leipzig Generative Models for M/EEG 4a Generative Models for M/EEG states x (e.g. dipole strengths) parameters parameters (source positions,

More information

A Model for Real-Time Computation in Generic Neural Microcircuits

A Model for Real-Time Computation in Generic Neural Microcircuits A Model for Real-Time Computation in Generic Neural Microcircuits Wolfgang Maass, Thomas Natschläger Institute for Theoretical Computer Science Technische Universitaet Graz A-81 Graz, Austria maass, tnatschl

More information

Learning Cycle Linear Hybrid Automata for Excitable Cells

Learning Cycle Linear Hybrid Automata for Excitable Cells Learning Cycle Linear Hybrid Automata for Excitable Cells Sayan Mitra Joint work with Radu Grosu, Pei Ye, Emilia Entcheva, I V Ramakrishnan, and Scott Smolka HSCC 2007 Pisa, Italy Excitable Cells Outline

More information

Decoding conceptual representations

Decoding conceptual representations Decoding conceptual representations!!!! Marcel van Gerven! Computational Cognitive Neuroscience Lab (www.ccnlab.net) Artificial Intelligence Department Donders Centre for Cognition Donders Institute for

More information