Runaway. demogenetic model for sexual selection. Louise Chevalier. Jacques Labonne
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1 Runaway demogenetic model for sexual selection Louise Chevalier Master 2 thesis UPMC, Specialization Oceanography and Marine Environments Jacques Labonne UMR Ecobiop INRA - National Institute for Agronomic Research
2 Runaway Model 1) Objective of Runaway 2) Choices for modelling 3) Example of simulation
3 Runaway Model 1) Objective of Runaway 2) Choices for modelling 3) Example of simulation
4 1) Objective of Runaway To study the co-evolution of traits and genome architecture under sexual selection.
5 1) Objective of Runaway To study the co-evolution of traits and genome architecture under sexual selection. sexual selection : - differences in mating and reproductive success caused by competition over mate and related to the expression of traits. - result in the evolution of this traits ( it can be morphological and behavioural traits) - distinction between sexual and other natural selection Sexual selection depends, not on a struggle for existence, but on a struggle between the males for possession of females: the result is not death to the unsuccessful competitor, but few or no offspring Darwin 1859, p. 88
6 1) Objective of Runaway To study the co-evolution of traits and genome architecture under sexual selection. Why this study? - sexual selection have a strong impact on the evolution on morphological and behavioural traits - genetic basis of these traits : the polygeny, the pleiotropy, and the spatial location in the genome (implying possible physical linkage) affect the evolution of these traits
7 Runaway Model 1) Objective of Runaway 2) Choices for modelling 3) Example of simulation
8 2) Choices for modelling a) demogenetic cycle When demogenetic meet behavioural ecology population individual 1 Genome a individual 2 Genome b individual 3 Genome c individual 4 Genome d.. 1) Survival Depend on: The genetic value of R The density of individuals 2) Mating behaviour Choosiness on fecundity Competitiveness of phenotype individual 1 individual 2 individual 4 back in the population Time step: 1 generation. The age of individual is a number of generations and depend on survival. individual 1 Genome x individual 2 Genome y 3) Reproduction Offspring number depend on parent s fecundity Meiosis and mutations: new genomes
9 2) Choices for modelling b) Traits under sexual selection When demogenetic meets behavioural ecology The genome of each individual is coding for 4 traits: - R : energy invested in reproduction - Ig : gametic investment (i.e. fecundity) - Pr : choosiness on the Ig - Ph : competitiveness for mating
10 2) Choices for modelling c) How to model mating behaviours? 1. Mate choice beetween individuals is mutual 2. Individuals express a choosiness on the fecondity (trait Ig) of their partner 3. Some individuals are more competitive for mating because their are more efficient at finding a partner or more conspicuous by others
11 2) Choices for modelling c) How to model mating behaviours? Encounters between individuals - Mating groups are done by drawing a given number of individuals (the size of the group can be chosen in the user interface) - Mating can occur between two individuals from the same mating group - individuals are sorted according to their phenotypic values ( decreasing order) Ph 1 Ph 2 Ph 3 Ph 4 Ph 1 meet each individual until mutual choice He is the first to choose his partner or the first to be presented to a potential partner
12 2) Choices for modelling c) How to model mating behaviours? Mating beetween individuals Probability that ind. 1 agrees to mate with ind. 2 : logit function of Ig and Pr P ind1 ind2 Ig ind 2 P ind1 ind2 = exp( pr1 a. Ig2 b ) 1 + exp( pr1 a. Ig2 b ) pr1: choosiness value for ind 1 Ig2: gametic investment for ind 2 a et b: parameters to adjust the shape of the function Mating random number 1 P ind1 ind2 random number 2 P ind2 ind1
13 2) Choices for modelling c) How to model mating behaviours? Mating beetween individuals The choosiness is adjusted according to mate quality distribution (Ig values) in the mating group Ig ind1 = Ig ind1 Ig min Ig min Ig max Ig min: lower value of gametic investment in the mating group Ig max: higher value of gametic investment in the mating group
14 2) choices for modelisation d) How to model genetic basis of traits? Genetical architecture: Using library Genetics - fixed number of genes - diploid DNA - sexual chromosomes and cytoplasmic DNA are not modeled - recombinaison probability map can be tuned - fixed number of potential alleles
15 2) Choices for modelisation d) How to model genetic basis of traits? Allelic expression Each allele can code for each of the traits (pleiotropy) Allelic effects for each traits : random draw from beta distributions Trait value : sum of allelic effects over all loci T j = n l=1 T = trait value n = loci number a i = value of the allele i for the trait j at the locus l a ij
16 2) Choices for modelisation d) How to model genetic basis of traits? Reproduction Number of offspring = min ( Ig ind a, Ig ind b) α α demographic constant New genomes are created : - meioses and fecundation processes (library genetics) -Mutation : random draw of a new allele from the pool of existing alleles defined by the user
17 Runaway Model 1) Objective of Runaway 2) Choices for modelling 3) Example of simulation
18 3) Example of simulation a) interface user and choices for scenarios Population size Carying capacity Number of genes Number of potential alleles
19 3) Example of simulation a) interface user and choices for scenarios Mating group size Type of encounter Type of preference
20 3) Example of simulation a) interface user and choices for scenarios Mutation rate Allelic effects for traits Allelic effects for Pr, Ph and Ig : random draw from a beta (1,3) distribution Allelic effects for R : random draw from a beta (1,1) distribution
21 3)Instances of simulation b) outputs: data extractor and Stand viewer Scenario : Population size and carying capacity : Mating group size : 30 Encounter with competitivity on phenotype and mate choice with choosiness on Ig 100 genes, 500 potential alleles per loci Allelic effects for traits Allelic effects distribution for Pr, Ph and Ig Allelic effects distribution for R
22 3) Instances of simulation b) outputs: data extractor and Stand viewer Initial stand - Trait distribution - genome viewer The mean allelic effect for Pr Ph and Ig is rather low for every loci
23 Mean trait values 3) Instances of simulation b) outputs: data extractor and Stand viewer Evolution over 1000 generations - Mean trait values in the population R Ph Mean value of trait R is increasing because of increasing value of phenotype while gametic investment remain constant and preference is decreasing. Ig Pr 0 generations 1000
24 3) Instances of simulation b) outputs: data extractor and Stand viewer Evolution over 1000 generations - Traits distribution in the population 500 generations 1000 generations Unimodal distributions Reduced variation phenotype preference investment resource
25 3) Instances of simulation b) instance of output: data extractor and Stand viewer Evolution over 1000 generations - Computing the correlation beetween traits 0.12 preference - investment Negative correlation beetween phenotype and preference 0 phenotype - investment phenotype - preference generations
26 Mean survival rate 3) Instance of simulation Number of individuals b) outputs: data extractor and Stand viewer Evolution over 1000 generations - Demography : survival depend on resource trait value and on density Mean survival rate in the population remain constante Because R mean value is increasing while the population size is decresing generations generations
27 3) Instance of simulation b) outputs : data extractor and Stand viewer Evolution over 1000 generations - Mean fitness in the population : lifetime reproductive success mean fitness mean age Two offsprings per individual on average generations
28 3) Instance of simulation number of alleles b) outputs: data extractor and Stand viewer Evolution over 1000 generations - Genome structure Number of allele Mean allelic effect per locus generations - Loss of allelic diversity
29 a work in progress.. It was just an example for a given combination of parameters.. Severals simulations are currently running in order to make a first sensitivity analysis combinations of parameters - 30 simulations for each combination of parameters - evolution over 3000 generations To understand how the different assumption influence the course of evolution and to compare the behaviour of the model with already published analytical models
30 Any questions?
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MCAT Biology - Problem Drill 08: Meiosis and Genetic Variability Question No. 1 of 10 1. A human female has pairs of autosomes and her sex chromosomes are. Question #01 (A) 22, XX. (B) 23, X. (C) 23, XX.
STUDY GUIDE SECTION 16-1 Genetic Equilibrium
STUDY GUIDE SECTION 16-1 Genetic Equilibrium Name Period Date Multiple Choice-Write the correct letter in the blank. 1. The smallest unit in which evolution occurs is a. an individual organism. c. a species