Progenetic species in polychaetes (Annelida) and problems assessing their phylogenetic affiliation

Size: px
Start display at page:

Download "Progenetic species in polychaetes (Annelida) and problems assessing their phylogenetic affiliation"

Transcription

1 558 Progenetic species in polychaetes (Annelida) and problems assessing their phylogenetic affiliation Torsten H. Struck 1 FB 05 Biology/Chemistry, AG Zoology, University of Osnabrück, Barbarastrasse 11, Osnabrück, Germany Synopsis Progenesis is defined as the retention of ancestral juvenile characters by adult stages of descendants due to an acceleration of the sexual maturation and thus is often regarded as a fast evolutionary process. Several small, meiofaunal polychaetes, such as Dinophilidae, some Dorvilleidae (for example, Parapodrilus), and Protodrilida, exhibit morphological simplicity in that they lack features typical of larger polychaetes, for example, parapodia and/or head appendages. Due to the general resemblance of adult meiofaunal polychaetes to juveniles of larger forms, progenesis has been invoked to explain evolutionary origins of many smaller taxa with increasing frequency over the past 4 decades. In this review, I summarize the interstitial species of polychaetes for which progenetic origin has been suggested on the basis of morphology. However, critical examination of morphological data that includes larval features reveals that autapomorphic characters uniting supposed progenetic taxa to specific annelid lineages are often missing. Typically larval and juvenile characters, which are argued to support hypotheses of progenetic origin, are often widely dispersed, homoplastic features. Because of this situation, molecular data seem to be the most reliable source for phylogenetic inference. However, other biological data, for example, from life history and morphology, are necessities to substantiate the progenetic evolution of these species. Progenetic evolution and interstitial species Retention of ancestral juvenile characters by adult stages of descendants (paedomorphosis) can arise either by a retardation of somatic development (neoteny) or by an acceleration of the sexual maturation (progenesis) (Gould 1977). Westheide (1987) proposed that only a few steps of speciation are necessary in the progenetic adaptation process, because instead of the reduction of several morphological characters like size, parapodia, and chaetae and the retention of others like ciliary bands or protonephridia at the same time to achieve a small body resembling ancestral juvenile stages only the sexual maturation has to be sped up. Thus, progenesis combines a maximum of phenotypic alterations with a minimum of genotypic changes (Gould 1977). The marine interstitium, the space between the sand grains, is an environment characterized by an extreme and rigid requirement for very small body size. Gould (1977) expected progenesis to be the prime evolutionary process in such a case. Furthermore, this requirement for the interstitium can be assumed to very old with limited change during Earth history (Noodt 1974). As long as there have been seas there has been sediment with its pore system (Westheide 1987). Thus, due to this rigid but stable condition a high degree of adaptation for very small body size is required to invade the interstitium. On the other hand, once adapted to small body size alterations of selection pressures are less likely to happen. Therefore, Westheide (1987) concluded that the probability of a successful and permanent invasion of the interstitium by a new species increases with an increasing potential for a fast adaptive process concerning body size. Many marine invertebrates like polychaetes exhibit a biphasic life cycle. During this life cycle larval and/or juvenile stages inhabit the interstitial space temporarily. Due to their small body size this is a safe haven against larger predators. Several authors (Gould 1977; Rieger 1980; Westheide 1987) have proposed that a permanent habitation of the interstitium by these species appears to be most rapidly accomplished by progenesis. Although other evolutionary processes have been proposed and demonstrated (for example, Siewing 1963; Werner 1965; Boaden 1975), progenesis is regarded to have a fundamental role in the evolution of interstitial species (Westheide 1987; Warwick 2000). Common features of several interstitial polychaete species are a small body size, from only a few millimeters down to 300 mm in length, as well as a seemingly From the symposium WormNet: Recent Advances in Annelid Systematics, Development, and Evolution presented at the annual meeting of the Society for Integrative and Comparative Biology, January 4 8, 2005, at San Diego, California. 1 struck@biologie.uni-osnabrueck.de Integrative and Comparative Biology, volume 46, number 4, pp doi: /icb/icj055 Advance Access publication June 28, 2006 Ó The Author Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please journals.permissions@oxfordjournals.org.

2 Progenetic polychaetes 559 Table 1 Supposed progenetic taxa and their proposed phylogenetic affiliation in order of appearance in the text Supposed progenetic taxon Proposed phylogenetic affiliation Reference Dinophilidae Dorvilleidae (for example Westheide and Riser 1983; Westheide 1987; Eibye-Jacobsen and Kristensen 1994) Non-Eunicidan taxon (Struck and others 2002; Struck, Halanych, and Purschke 2005) Arenotrocha, Microdorvillea, Petrocha, Pusillotrocha, Ikosipodus, Neotenotrocha simple organization including only a few segments, missing or few parapodia and chaetae, a ventral ciliary gliding band, a epidermal nervous system, and protonephridia (for example, Westheide 1990). Due to the simple organization many of these taxa including Dinophilidae, Protodrilida, and Nerillidae were initially grouped together as Archiannelida and considered to reflect the basal organization of Annelida (see Hermans 1969). However, ultrastructural analyses (for example, Purschke and Jouin 1988), general arguments about annelid origins (for example, Westheide 1997), and 18S rdna (Struck and others 2002) changed this view. Due to resemblance with larval or juvenile stages independent progenetic origins has been suggested for many of the interstitial polychaete taxa (for example, Westheide 1987). The purpose of this review is to summarize the interstitial species of polychaetes for which a progenetic origin has been suggested, to outline the problems of assessing their phylogenetic position in Annelida, and to examine the support for progenetic hypotheses. Supposed progenetic polychaetes Supposed progenetic species of polychaetes, which I discuss briefly in this review, are listed in Table 1. Dorvilleidae (for example Westheide 1982; Westheide 1987; Eibye-Jacobsen and Kristensen 1994; Struck and others 2006) Parapodrilus, Apharyngtus, Apodotrocha Dorvilleidae (for example Westheide and Riser 1983; Westheide 1987; Eibye-Jacobsen and Kristensen 1994; Struck and others 2002; Struck and others 2006) Nerillidae Eunicida/Amphinomida (Westheide 1990; Rouse and Pleijel 2001; Worsaae and others 2005) Protodrilida Spionida (H. Hansen, Personal communication, Free University Berlin) Psammodrilus aedificator, Psammodriloides fauveli Psammodrilidae (Swedmark 1958; Swedmark 1964; Kristensen and Nørrevang 1982) Microphthalmus Hesionidae (for example Westheide 1967; Wolff 1969; Westheide 1987; but see Pleijel and Dahlgren 1998; Dahlgren and others 2000) Metaxypsamma uebelackerae Aphroditiformia/Pholoidae (Wolf 1986) Pisionidae Aphroditiformia (Struck, Purschke, and Halanych 2005; Wiklund and others 2005) Protoaricia oerstedi Orbiniidae (for example, Eisig 1914; Purschke and Tzetlin 1996; Bleidorn 2005) Branchiomaldane Arenicolidae (Bartolomaeus and Meyer, 1999; Bleidorn and others 2005) Maldanidae Arenicolidae (Tzetlin 1991; op. cit. Purschke and Tzetlin 1996) Protis, Protula, Apomatus Serpulidae (Knight-Jones and others 1997) Poeobius meseres Flabelligeridae (Burnette and others 2005) Dinophilidae is the classical example of progenesis in polychaetes. Due to convincing similarities to developmental stages of larger eunicidans and their relatively small size (Fig. 1), progenetic origin of Dinophilidae within Eunicida has been repeatedly assumed, already as early as the 19th century (Mecznikow 1866; Svesnikov 1958; Westheide 1987). Westheide (1982) and Westheide and Riser (1983) also discussed a phylogenetic hypothesis that the 2 dinophilid genera Dinophilus and Trilobodrilus are extremely derived Dorvilleidae. The most substantial evidence for a close relationship between dinophilids and eunicidans was derived from Åkesson s (1977) experiments demonstrating reciprocal infection with coelomic coccidian of the genus Grellia, parasites that are regarded as hostspecific. Finally, Eibye-Jacobsen and Kristensen (1994), on the basis of a morphological cladistic analysis, merged Dinophilidae with Dorvilleidae. In their analysis Dinophilidae and other supposedly progenetic dorvilleid species follow each other step by step and develop out of each other with gradually increasing juvenile organization (see also Fig. 2A). However, molecular analyses based on 18S and 28S rdna significantly rejected a closer relationship of Dinophilidae to any eunicidan taxon and thus Dinophilidae are

3 560 Torsten H. Struck Fig. 1. Adults of Dinophilus gyrociliatus (Dinophilidae) and Parapodrilus psammophilus ( Dorvilleidae ) are shown in comparison to early developmental stages of Schistomeringos rudolphi ( Dorvilleidae ) to exemplify the similarity of adult interstitial species and developmental stages of larger species (Modified after Westheide, 1984). not of progenetic origin within Eunicida (Struck and others 2002, Struck and others 2005a). However, their progenetic origin from another polychaete taxon can not be excluded (Müller and Westheide 2002). To date Dorvilleidae (Eunicida) is proposed to contain the greatest number of progenetic species. Eunicida (sensu Rouse and Pleijel 2001) is a speciesrich taxon for which monophyly has been well established by at least one morphological autapomorphy: a ventral pharyngeal organ with conspicuous jaw apparatus, consisting of cuticular mandibular and maxillary elements which can be, at least partially, regarded as homolog throughout the various extant and fossil taxa (Kielan-Jaworowska 1966; Wolf 1986; Purschke 1987; Orensanz 1990). Several dorvilleid genera are hypothesized to be of progenetic origin: Arenotrocha, Microdorvillea, Petrocha, Pusillotrocha, Ikosipodus, and Neotenotrocha (for example, Westheide 1982; Eibye-Jacobsen and Kristensen 1994). Additionally, the jawless Parapodrilus (Fig. 1), Apharyngtus, and Apodotrocha have also been included (Westheide 1965; Westheide and Riser 1983; Eibye-Jacobsen and Kristensen 1994). Adults of these species and Dinophilidae can be arranged in morphological series, which resemble the developmental series of larger eunicidans. Although Eibye-Jacobsen and Kristensen (1994) recovered in their cladistic analysis phylogenetic relationships similar to the order of the morphological series (see also Fig. 2A), the arrangement in morphological series may not necessarily reflect phylogenetic relationships (Westheide 1987). Molecular data provided additional support for the progenetic origin of the jaw bearing Microdorvillea (Struck and others 2006) and the jawless Parapodrilus (Struck and others 2002). Both taxa evolved independently from each other in a dorvilleid clade comprising the large genera Protodorvillea, Dorvillea, Schistomeringos, and Parougia. Furthermore, Ophryotrocha derived within this clade and thus, they might also be of progenetic origin (Struck and others 2006). In contrast to Eibye- Jacobsen and Kristensen s (1994) analysis molecular data support the hypothesis of several independent progenetic events (Westheide 1987). Similar to Dinophilidae, progenesis has also been proposed for the other former archiannelids Protodrilida and Nerillidae. Nerillidae resemble Aciculata in the morphology of sensory palps, prostomial antennae, compound chaetae, muscular pharynx, parapodial cirri, and one pair of pygidial cirri (Rouse and Fauchald 1997; Rouse and Pleijel 2001; Worsaae and others 2005). Westheide (1990) mentioned the superficial resemblance of adult Nerillidae and juvenile Onuphidae (Eunicida) (Hsieh and Simon 1987). However, except for the consistence of body configuration Nerillidae do not share any other feature with these or other juvenile stages (Westheide and Purschke 1996). Nonetheless, Rouse and Pleijel (2001) suggested that such a relationship should be considered. The presence of a ventral buccal organ has been pointed out as a possible synapomorphy for Nerillidae, Eunicida, and Amphinomida (Rouse and Fauchald 1997; Worsaae and others 2005). However, the different ventral organs are very likely not homolog (see Purschke and Tzetlin 1996). A study using 18S rdna and morphological date reconstructed a closer, but poorly supported relationship of Nerillidae to Amphinomida and Eunicida (Worsaae and others 2005). A close relationship of Protodrilida to Spionida has been proposed, but is not sustained by clear morphological synapomorphies. This proposal was based on evident structural correspondences of the

4 Progenetic polychaetes 561 Fig. 2. Weighted parsimony analyses using the original data matrix of Eibye-Jacobsen and Kristensen (1994) (A; tree length ¼ 290) and extended by a larval stage of Schistomeringos rudolphi (B; tree length ¼ 293). Strict consensus trees of 135 MP trees each. Only bootstrap values above 50 shown. Operational taxonomic units of interest highlighted. anterior end, the nervous system, specific structure of the palps, and nuchal organs (Orrhage 1974; Schlötzer- Schrehardt 1987; Purschke and Jouin 1988; Purschke 1990a; Purschke 1993). In particular, these workers highlight the similarities between the central nervous system and the innervations of the palps. Protodrilida s progenetic origin within Spionida is inferred from the presence of a prostomial, probably light sensitive statocyst in adult protodrilids and juvenile spionids (H. Hansen, Personal communication, Free University Berlin and Purschke 1990b,c, 1992). Another example of neoteny appears within the enigmatic interstitial Psammodrilidae. Psammodrilus aedificator and Psammodriloides fauveli are thought to be of progenetic origin from Psammodrilus balanoglossoides with P. fauveli possessing more neotenic features (Swedmark 1958; Swedmark 1964; Kristensen and Nørrevang 1982). The position of another interstitial genus, Microphthalmus, is also controversial. These Nereidiformia species were regarded as Hesionidae (for example, Westheide 1967; Wolff 1969; Westheide 1987). Westheide (1987) pointed out the apparent paedomorphic character of these small species in comparison with juvenile stages of larger Hesionidae (for example, Schram and Haaland 1984). However, a cladistic analysis of Nereidiformia placed Microphthalmus in a basal position or closely related to Pilargidae and Hesionides, and not closer to Hesionidae (Pleijel and Dahlgren 1998). Furthermore, a molecular analyses based on a 660 bp fragment of the mitochondrial cytochrome c oxidase subunit I (COI) also resulted in a close relationship of Pilargidae and Microphthalmus with Hesionidae as sister to this group (Dahlgren and others 2000). However, nodal support for these results was low in all analyses. Additionally, neither a combined

5 562 Torsten H. Struck analysis nor a molecular analysis omitting the highly variable third position of COI caused a significant increase of nodal support (Dahlgren and others 2000). Within Microphthalmus the species group of M. listensis, M. nahantensis, and M. carolensis is thought to be one of the few convincing examples of step-by-step progenetic evolution similar to a morphological series as exemplified above for dorvilleids and dinophilids (Westheide 1987; Westheide and Rieger 1987). For example, with a decreasing number of setigers larval features like the ciliary gliding band become increasingly persistent. Metaxypsamma uebelackerae, an interstitial species in fine to coarse sands and typically attributed to Aphroditiformia, has paired mounds of papillae very similar to structures in nectochaete I and II larval stages of Pholoe synophthalmica, leading to speculation of a progenetic origin within Pholoidae (Aphroditiformia) (Wolf 1986). Additionally, M. uebelackerae shows considerable similarities to the interstitial Pholoe swedmarki (Laubier 1975), which still possesses elytra. Both show similar adaptations to the interstitial habitat including reduced number of segments (up to 24 or 27, respectively, in contrast to up 90 in other Pholoidae), reduced or absent notopodia, and reduced tentacular cirri (Wolf 1986). The loss of elytra could have enabled M. uebelackerae to invade even smaller interstitial spaces than P. swedmarki (Wolf 1986). Recent molecular analyses supported the highly derived position of the interstitial Pisionidae within Aphroditiformia, the scale worms, and corroborated a closer relationship to Pholoidae and Sigalionidae (Struck and others 2005b; Wiklund and others 2005). Pisionidae lack elytra like M. uebelackerae and show at least heterochrony in the earlier developmental appearance of the venom glands and their associated styli than in other Aphroditiformia (Åkesson 1961). The evolution within Pisionidae is regarded as a transition from middle-sized infaunal species to small true interstitial species (Westheide 1987). However, the alternative direction from interstitial species to infaunal ones due to a secondary increase in size is also possible, especially taking into account that other infaunal Aphroditiformia still possess their elytra. To address this question the phylogenetic relationships within Pisionidae have to be studied in more detail. Another example of progenesis can be found in Orbiniidae. The ventral pharyngeal organ, pygidial cirri, and the shape of the thoracic neuropodia of Protoaricia oerstedi and juveniles of Naineris and Phylo exhibit a high degree of similarity and thus the progenetic origin of Protoaricia has been invoked (for example, Eisig 1914; Purschke and Tzetlin 1996). On the other hand, validity of Protoariciinae has been questioned due to considerations that these species are actually juveniles of other Orbiniidae taxa (Blake 1996). A molecular phylogenetic analysis using 16S and 18S rdna data recovered a significantly supported clade of P. oerstedi and Naineris species and thus corroborated their progenetic origin (Bleidorn 2005). Furthermore, several individuals of P. oerstedi in this analysis had visible eggs. Species of Branchiomaldane, typically considered as Arenicolidae, are characterized by a small body and the resemblance to juvenile stages of Arenicolides including the possession of tiny, largely unbranched gills and the lack of an achaetous, gill-less tail, which is typical for juvenile stages in other genera of Arenicolidae (Fauvel 1899; Ashworth 1912; Fournier and Barrie 1987; Bartolomaeus and Meyer 1999). Furthermore, juvenile stages of arenicolid species and adult Branchiomaldane possess pigmented photoreceptors, which are absent in the adults, and at least in Arenicola marina and Branchiomaldane these photoreceptors possess lenses (Nogueira and Rizzo 2001; Bleidorn and others 2005). Molecular data of 18S, 28S, and 16S rdna also confirmed a derived position of Branchiomaldane within Arenicolidae as sister to Arenicolides ecaudata (Bleidorn and others 2005). Thus, both morphological and molecular data support the hypothesis of their progenetic origin (Bartolomaeus and Meyer 1999). The foregut structures of different maldanid species, the bamboo worms, can be arranged in sequences resembling the ontogeny of the foregut structures of Arenicolidae and a progenetic origin of Maldanidae in general has not been discarded (Tzetlin 1991; op. cit. Purschke and Tzetlin 1996). Furthermore, the Clymenites larvae of Arenicolidae exhibit similarities to adult Maldanidae (Rouse 1992). However, preliminary analyses based on 18S rdna only revealed a sistergroup relationship of Maldanidae and Arenicoidae and thus it still remains unresolved whether maldanid species show a plesiomorphic condition of the foregut structure or an apomorphic, progenetic (Bleidorn and others 2005). Therefore, it is necessary to include more maldanid and arenicolid, as well as outgroup species to deduce the basal foregut structures of both taxa and thus to conclude on the most parsimonious process explaining their evolution. Finally, paedomorphic processes have often been invoked in the evolution of species in abyssal depth due to low temperatures and poor feeding (Zezina 1994). Within the well known Serpulidae, the Christmas tree worms, the genera Protis, Protula, and Apomatus are thought to be of paedomorphic origin (Knight-Jones and others 1997). Whereas Protula and some species of Protis lack an operculum, other

6 Progenetic polychaetes 563 Protis species and Apomatus possess a terminal vesicle at a pinnulated radiole. In that, these 3 genera resemble the development of 2 other serpulid genera, Serpula and Hydroides. After metamorphosis, a terminal vesicle is developed on one of the second dorsal pinnulated radioles. This vesicle differentiates into the first operculum. Thus, the first operculum is on a pinnulated radiole. Later it is replaced by other opercula on stalks without pinnules (Sentz-Braconnot 1964). Alternatively, the lack or reduction of opercula in Serpulidae has been regarded as an adaptation for respiratory necessities. For example, the lack of an operculum in Hyalopomatus cancerum may be due to a low oxygen environment (Knight-Jones and others 1997). However, the 3 supposed paedomorphic genera are found at great depth with oxygen saturation generally above 0.5 (Sverdrup and others 1942; Zibrowius 1977). Nonetheless, even a low oxygen habitat must not necessarily exclude paedomorphic processes. The former might be the driving selective force and the latter the adaptive process, which would also increase the body surface to volume ratio. Phylogenetic assessment of progenetic species This steadily growing assemblage of independent polychaete lineages indicates that progenesis, or more general paedomorphosis, is not an infrequent evolutionary process in polychaetes. Although not thoroughly investigated yet it seems especially frequent in the colonization of the interstitial habitat. As suggested by Westheide (1987) the biphasic life cycle of many polychaetes with larval and/or juvenile stages temporarily inhabiting the interstitial space may predispose them for a successful and permanent colonization of this space by means of progenesis. However, as discussed above and shown in Table 1 the phylogenetic assessment of many of the progenetic species is still uncertain based on morphology. For example, even though the supposed progenetic origin of Dinophilidae is well substantiated especially by investigations of the nervous system showing apparent larval and juvenile characters (Müller and Westheide 2002), their phylogenetic affiliation within Annelida, except for the exclusion from Eunicida, is unresolved (Struck and others 2002, Struck and others 2005a). The phylogenetic position of other taxa including Microphthalmus, Protodrilida, Nerillidae, and Psammodrilidae is also unresolved (see Dahlgren and others 2000; Rouse and Pleijel 2001). In contrast, placement of several other species in specific polychaete taxa is well established by morphological autapomorphies. For example, the inclusion of Microdorvillea and Ikosipodus within at least Eunicida is well established because of the possession of a ventral pharyngeal organ with a complex jaw apparatus consisting of mandibles and rows of maxillary pieces (for example, Eibye-Jacobsen and Kristensen 1994). However, even the position of these better-established taxa within that particular polychaete taxon is often uncertain. For example, based on the cladistic analysis of Eibye-Jacobsen and Kristensen (1994) Microdorvillea and Ikosipodus are members of a highly derived, unique crown group of progenetic dorvilleids and dinophilids comprising also Arenotrocha, Petrocha, Pusillotrocha, Neotenotrocha, Parapodrilus, Apodotrocha, Apharyngtus, Trilobodrilus, and Dinophilus (see Fig. 2A). Alternatively, Westheide (1982) and Westheide and Riser (1983) also suggested a close relationship of a group containing Pusillotrocha, Ikosipodus, Petrocha, Arenotrocha, and Microdorvillea, but far away from another group including Parapodrilus, Apodotrocha, Apharyngtus, Trilobodrilus, and Dinophilus. Furthermore, Westheide (1987) acknowledged the possibility that independent progenetic origins of species might occur even more often within dorvilleids. Molecular data substantiate the hypothesis of several independent progenetic origins of dorvilleid and dinophilid species (Struck and others 2002, Struck, Halanych and Purschke 2005a, 2006). Thus, the phylogenetic assessment of progenetic taxa in polychaetes is problematic and may be misled by morphology. This has also recently been shown for progenetic salamanders using a comparative approach between molecular and morphological data (Wiens and others 2005). Problematic factors Several factors may be responsible for the problems occurring in the phylogenetic assessment of progenetic taxa. In cladistic analyses of morphological data usually only adult stages are compared with each other to establish a common basis for judgment and homology. However, in the case of progenetic species, this means that adult taxa with larval features are compared with other adults, which already possessed a similar stage or features in an earlier phase of their development. Thus, one could argue that comparable life history stages are not being used to score the taxa. Especially within the salamander literature the possession of similar larval characters in the adult stages of distantly related paedomorphic taxa has been suggested and shown to obscure phylogenetic analyses based on adult morphology (for example, Hecht and Edwards 1976; Good and Wake 1992; Larson and Dimmick 1993; Wiens and others 2005). Similar to salamanders, larval characters in polychaetes exhibit an overall

7 564 Torsten H. Struck structural similarity. For example, and as mentioned above, investigations on the nervous system of the Dinophilidae clearly show larval and juvenile characters indicating progenetic evolution (Müller and Westheide 2002), but these structures are widespread among larval and juvenile polychaetes belonging to various taxa. This is also true for other typical larval features of progenetic species like protonephridia or ciliary gliding bands. Due to the deletion of potential paedomorphic characters from their data set Wiens and others (2005) were able to show the negative influence of synapomorphic characters of adult stages of nonpaedomorphic taxa on the phylogenetic placement of paedomorphic taxa. Because of the retention of a larval status these synapomorphic characters, completely developed only after metamorphosis, are absent in paedomorphic taxa and thus their placement in phylogenetic reconstructions may be misled. In the analysis of Eibye-Jacobsen and Kristensen (1994) the group of supposedly progenetic dorvilleids and dinophilids is only supported by absent characters, which are present in the adult stages of nonpaedomorphic ingroup and outgroup taxa. But not only with regard to paedomorphic taxa are reductions or even losses of characters problematic. The interpretation of absent morphological characters in a phylogenetic context as either plesiomorphic absent or secondary lost and thus apomorphic absent is difficult (for example, Purschke and others 2000; Collin and Cipriani 2003; Jenner 2004). At last, Wiens and others (2005) demonstrated the negative impact on the phylogenetic assessment of paedomorphic salamanders by convergent adaptation to the aquatic habitat. Similar adaptations of the same morphological characters could be shown in aquatic, nonpaedomorphic salamanders and even other aquatic tetrapods. In contrast to terrestrial, nonpaedomorphic salamanders with aquatic larval stages, paedomorphic salamander lineages lack the constraints imposed by terrestrial adult morphology and can more freely adapt to the aquatic niche (Wiens and others 2005). As most of the presented supposedly progenetic polychaetes inhabit the same environment, the marine interstitium, convergent adaptation might also be a factor to consider. Therefore, due to these reasons morphological analyses would most likely lead to one clade of taxa with presumed progenetic evolution, irrespectively whether these characters evolved independently or not. However, molecular phylogenies should be able to facilitate the distinction between homolog and convergent morphological characters, because neither the specific selection pressures of the new habitat nor the change in life history do affect this kind of data. The sequence of a gene will be the same independent from the developmental stage it is determined from. Thus, future taxonomic and phylogenetic studies of supposedly progenetic species should integrate the results from both molecules and morphology to obtain a more holistic knowledge of their evolution. Example of phylogenetic reconstruction using a hypothetical progenetic descendant The principal of progenesis assumes that a larval stage becomes sexual mature and arrests the further somatic development (Gould 1977). Accordingly, the coding of a larval stage of a recent species as a sexual mature stage would simulate this process with the advantage of knowing a priori the ancestor/sister taxon (that is, the sexual mature stage of the recent species). To show the validity of the arguments made above, I reanalyzed the absence/presence data matrix of Eibye-Jacobsen and Kristensen (1994) with the Eunicidae/Tetraprionidae outgroup including such a hypothetical progenetic descendant. Therefore, the early developmental stage of Schistomeringos rudolphi without appendages, jaws and parapodia, shown left in Fig. 1 (Richards 1967), was coded according to the character state description provided by Eibye- Jacobsen and Kristensen (1994) resulting in the following 38 character states: N11NNN1N111 N N011N11?00000.Tobe conservative the nonpaedomorphic characters 37 and 38 addressing sperm morphology were coded the same as in the adult stage of S. rudolphi. Exhaustive searches for the most parsimonious (MP) trees were performed using the branch and bound option in PAUP*4.0b (Swofford 2002). All character state transitions were unordered and characters were weighted as assigned in the final stage of the successive weighting (Table IV, Eibye-Jacobsen and Kristensen 1994). Strict consensus trees were drawn from the obtained MP trees. Additionally, bootstrap analyses of 1000 replicates were performed using a heuristic search with 10 random additions of taxa in each replicate with no more than trees saved per replicate (Nchuck ¼ ChuckScore ¼ 1). The strict consensus tree of 135 MP trees of the analysis without the larval Schistomeringos (Fig. 2A) is congruent with the one tree chosen by Eibye-Jacobsen and Kristensen (1994), except this analysis did not recover a sistergroup relationship of Parougia and Ougia. The analysis of the data set with the larval Schistomeringos generally revealed the same topology (Fig. 2B). The larval stage is not closely related to the adult Schistomeringos but to the jawless Parapodrilus, Apodotrocha, Apharyngtus, Dinophilus, and Trilobodrilus. Additionally, this clade is supported by the highest bootstrap value (91) in

8 Progenetic polychaetes 565 this analysis. Interestingly, the parapodia-bearing Parapodrilus is more closely placed to the other 4 taxa without parapodia than the parapodia-less larval stage. If the actual origin of the larval stage would have been unknown, as is the case for all included progenetic species, this bias of the morphological series may have been inferred to be credible. Thus, this analysis figuratively demonstrated the problems in assessing the phylogenetic position of progenetic species. How to assess the phylogenetic position of progenetic taxa Different strategies have been proposed how to assess the phylogenetic position of progenetic taxa using morphological data sets. A possibility would be to use only larval features (Wiens and others 2005). However, the developmental stages of different species have to be homologized to each other to provide a reasonable basis for the judgment of primary character homology. Furthermore, in continuously developing taxa like dorvilleids, the different developmental stages have to be defined first, which might provide an additional source of systematic error due to other unknown processes of heterochrony. Furthermore, due to the fact that progenetic evolution can take place in many different developmental stages (for example, see morphological series of dorvilleids (Westheide 1984)) no developmental stage can be neglected. Thus, the entire life histories of the investigated taxa have to be known and included based on an appropriate coding matrix. At last, as already mentioned larval features are often widespread among polychaetes belonging to various taxa. This is also known from salamanders (Wiens and others 2005). The exclusion of paedomorphic characters, defined as the presence of character states in both larval or juvenile stages of nonpaedomorphic taxa and adults of paedomorphic taxa (Wiens and others 2005), has been suggested for phylogenetic analyses of salamanders (for example, Duellman and Trueb 1986). However, this requires that such characters can be identified. Furthermore, Wiens and others (2005) showed that other factors like synapomorphies of adult characters in nonpaedomorphic taxa and convergent evolution have an impact on the phylogenetic assessment of paedomorphic taxa and thus they proposed to code the adult morphology of paedomorphic taxa as unknown, given the assumption that comparable life history stages are not being used to score the taxa. Whereas both approaches are possible with salamander data sets (30 paedomorphic excluded or 317 coded unknown out of 326 characters in Wiens and others 2005), in the analysis of Eibye-Jacobsen and Kristensen (1994) either only the characters 37 and 38 addressing sperm morphology would be regarded as nonpaedomorphic or all 38 characters in the supposed progenetic taxa had to be coded unknown. The latter effectively means that the progenetic taxa are excluded from the analysis. Nevertheless, to discriminate between the different types of characters is the most promising approach in the case of progenetic/paedomorphic taxa. Ideally the characters should be either exclusive to a certain stage (for example, reproductive or exclusively larval characters) or not alter during development (for example, the number of chromosomes). Sequence data of genes typically used in molecular phylogenetic analyses (for example, 18S rdna or cytochrome c oxidase subunit I) are not altered neither by developmental processes nor by evolutionary processes like progenesis or adaptation to a specific habitat (for example, Hillis and others 1996; Wiens and others 2005). Therefore, given data availability, number of characters and effort to generate new data molecular data are the data type of choice to elucidate the phylogenetic affiliations of supposed progenetic taxa. However, molecular phylogenetic analyses only produce trees and additional data are necessary to put the results into a biological context. With regard to progenesis this means to positively deduce the progenetic origin of a taxon the biology and life history of the particular taxon, as well as of the closest relatives has to be compared with further related taxa. Recent molecular phylogenetic analyses of Poeobius meseres and Flabelligeridae were able to show the highly derived position of this holopelagic taxon within the benthic flabelligerids (Burnette and others 2005). P. meseres possesses only 11 poorly defined segments with no setae (Rouse and Pleijel 2001). Based on midwater spawning, relatively late development of setae (that is, at or after the 11 setiger stage) and feeding larvae in Flabelligera commensalis (Spies 1977), a progenetic origin of the holopelagic Poeobius seems reasonable (Burnette and others 2005). Thus, progenetic origin within polychaetes not only occurs in the colonization of the interstitial space. Acknowledgments I appreciate the comments of Prof. Kenneth M. Halanych (Auburn University, USA), Dr Harald Hausen (Free University, Berlin, Germany), and Apl.-Prof. Dr Günter Purschke (University of Osnabrück, Germany) on earlier drafts. Financial support was provided by the NSF WormNet grant EAR Conflict of interest: None declared.

9 566 Torsten H. Struck References Åkesson B On the histological differentiation of the larvae of Pisione remota (Pisionidae, Polychaeta). Acta Zool 42: Åkesson B Parasite-host relationships and phylogenetic systematics. The taxonomic position of dinophilids. Mikrofauna Meeresboden 61: Ashworth JH Catalogue of the Chaetopoda in the British Museum. A. Polychaeta. Part I Arenicolidae. London: British Museum. Bartolomaeus T, Meyer K Zur Phylogenie der Arenicolidae. Courier Forschungsinstitut Senckenberg 215:23 9. Blake JA Family Orbiniidae Hartman, In: Blake JA, Hilbig B, Scott PH, editors. Taxonomic atlas of the benthic fauna of the santa maria basin and western santa barbara channel, Volume 6, The Annelida, Part 3: Polychaeta: Orbiniidae to Cossuridae. Santa Barbara, CA: Santa Barbara Museum of Natural History. p Bleidorn C Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data. Zool J Linn Soc 144: Bleidorn C, Vogt L, Bartolomaeus T Molecular phylogeny of lugworms (Annelida, Arenicolidae) inferred from three genes. Mol Phylogenet Evol 34: Boaden PJS Anaerobiosis, meiofauna and early metazoan evolution. Zool Scr 4:21 4. Burnette AB, Struck TH, Halanych KM Holopelagic Poeobius meseres (Poeobiidae, Annelida) is derived from benthic Flabelligerid worms. Biol Bull 208: Collin R, Cipriani R Dollo s law and the re-evolution of shell coiling. Proc R Soc Lond B Biol Sci 270: Dahlgren TG, Lundberg J, Pleijel F, Sundberg P Morphological and molecular evidence of the phylogeny of Nereidiform polychaetes (Annelida). J Zoolog Syst Evol Res 38: Duellman WE, Trueb L Biology of amphibians. New York: McGraw-Hill. Eibye-Jacobsen D, Kristensen RM A new genus and species of Dorvilleidae (Annelida, Polychaeta) from Bermuda, with a phylogenetic analysis of Dorvilleidae, Iphitimidae and Dinophilidae. Zool Scr 23: Eisig J Zur Systematik, Anatomie und Morphologie der Ariciiden nebst Beiträgen zur generellen Systematik. Mitt Zool Stn Neapel 21: Fauvel P Sur les stades Clymenides et Branchiomaldane des arenicolides. Bull Sci Fr Belg 32: Fournier JA, Barrie J Revisionary commentary on Branchiomaldane (Polychaeta: Arenicolidae) with description of a new species from Labrador. Biol Soc Wash 7: Good DA, Wake DB Geographic variation and speciation in the torrent salamanders of the genus Rhyacotriton (Caudata: Rhyacotritonidae). Univ Calif Publ Zool 126:1 91. Gould SJ Ontogeny and phylogeny. Cambridge, MA: The Belknapp Press of Harvard Universitiy Press. Hecht MK, Edwards JL The determination of parallel or monophyletic relationships: the proteid salamanders a test case. Am Nat 110: Hermans CO The systematic position of the Archiannelida. Syst Zool 18: Hillis DM, Moritz C, Mable BK Molecular systematics, 2nd edition. Sunderland, MA: Sinauer Associates, Inc. Hsieh H-L, Simon JL Larval development of Kinbergonuphis simoni, with a summary of development patterns in the family Onuphidae (Polychaeta). Bull Biol Soc Wash 7: Jenner RA When molecules and morphology clash: reconciling conflicting phylogenies of the Metazoa by considering secondary character loss. Evol Dev 6: Kielan-Jaworowska Z Polychaete jaw apparatus from the Ordovician and Silurian of Poland and a comparison with modern forms. Acta Palaeontol Pol 16: Knight-Jones EW, Knight-Jones P, Oliver PG, Mackie ASY A new species of Hyalopomatus (Serpulidae: Polychaeta) which lacks an operculum: is this an adaptation to low oxygen? Hydrobiologia 355: Kristensen RM, Nørrevang A Description of Psammodrilus aedificator sp.n. (Polychaeta), with notes on the Artic interstitial fauna of Disko Island, W. Greenland. Zool Scr 11: Larson A, Dimmick WW Phylogenetic relationships of the salamander families: an analysis of congruence among morphological and molecular characters. Herpetological Monographs 7: Laubier L Adaptations morphologiques et biologiques chez un aphroditien interstitiel: Pholoe swedmarki sp. n. Cah Biol Mar 16:671/683. Mecznikow E Apsilus lentiformis, ein Räderthier. Z Wiss Zool 16: Müller MCM, Westheide W Comparative analysis of the nervous systems in presumptive progenetic dinophilid and dorvilleid polychaetes (Annelida) by immunohistochemistry and clsm. Acta Zool 83: Nogueira JMM, Rizzo AE A new species of Branchiomaldane (Polychaeta: Arenicolidae) from the state of Sao Paulo, south eastern Brazil. J Mar Biolog Assoc UK 81: Noodt W Anpassungen an interstielle Bedingungen: Ein Faktor in der Evolution höherer Taxa der Crustacea. Faunistische-ökologische Mitteilungen 4: Orensanz JM The eunicemorph polychaete annelids from Antarctic and Subantarctic seas. With addenda to the Eunicemorpha of Argentina, Chile, New Zealand, Australia, and the southern Indian Ocean. Biol Antarc Seas 21: Orrhage L Über die Anatomie, Histologie und Verwandtschaft der Apistobranchidae (Polychaeta Sedentaria) nebst Bemerkungen über die systematische Stellung der Archianneliden. Zeitschrift für Morphologie und Ökologie der Tiere 79:1 45.

10 Progenetic polychaetes 567 Pleijel F, Dahlgren TG Position and delineation of Chrysopetalidae and Hesionidae (Annelida, Polychaeta, Phyllodocida). Cladistics 14: Purschke G Anatomy and ultrastructure of ventral pharyngeal organs and their phylogenetic importance in Polychaeta (Annelida) IV. The pharynx and jaws of the Dorvilleidae. Acta Zool 68: Purschke G. 1990a. Comparative electron microscopic investigation of the nuchal organs in Protodriloides, Protodrilus and Saccocirrus (Annelida, Polychaeta). Can J Zool 68: Purschke G. 1990b. Fine structure of the so-called statocysts in Protodrilus adhaerens (Protodrilidae, Polychaeta). Zool Anz 224: Purschke G. 1990c. Ultrastructure of the statocysts in Protodrilus species (Polychaeta): Reconstruction of the cellular organization with morphometric data from receptor cells. Zoomorphology 110: Purschke G Ultrastructural investigations of presumed photoreceptive organs in two Saccocirrus species (Polychaeta, Saccocirridae). J Morphol 211:7 21. Purschke G Structure of the prostomial appendages and the central nervous system in the Protodrilida (Polychaeta). Zoomorphology 113:1 20. Purschke G, Hessling R, Westheide W The phylogenetic position of the Clitellata and the Echiura on the problematic assessment of absent characters. J Zool Syst Evol Res 38: Purschke G, Jouin C Anatomy and ultrastructure of the ventral pharyngeal organs of Saccocirrus (Saccocirridae) and Protodriloides (Protodriloidae fam. n.) with remarks on the phylogenetic relationships within Protodrilida (Annelida: Polychaeta). J Zool 215: Purschke G, Tzetlin AB Dorsolateral ciliary folds in the polychaete foregut: structure, prevalence and phylogenetic significance. Acta Zool 77: Richards TL Reproduction and development of the polychaete Stauronereis rudolphi, including a summary of development in the superfamily Eunicea. Marine Biol 1: Rieger RM A new group of interstitial worms, Lobatocerebridae nov. fam. (Annelida) and its significance for metazoan phylogeny. Zoomorphology 95: Rouse GW Oogenesis and larval development in Micromaldane spp. (Polychaeta: Capitellida: Maldanidae). Invertebr Reprod Dev 21: Rouse GW, Fauchald K Cladistics and polychaetes. Zool Scr 26: Rouse GW, Pleijel F Polychaetes. Oxford: Oxford University Press. Schlötzer-Schrehardt U Ultrastructural investigation of the nuchal organs of Pygospio elegans (Polychaeta). II. Adult nuchal and dorsal organs. Zoomorphology 107: Schram TA, Haaland B Larval development and metamorphosis of Nereimyra punctata (O. F. Müller) (Hesionidae, Polychaeta). Sarsia 69: Sentz-Braconnot E Sur le développement des Serpulidae Hydroides norvegica (Gunnerus) et Serpula concharum Langerhans. Cah Biol Mar 5: Siewing R Zur Morphologie der aberranten Amphipodengruppe Ingolfiellidae und zur Bedeutung extremer Kleinformen für die Phylogenie. Zool Anz 171: Spies RB Reproduction and larval development of Flabelliderma commesalis. In: Reish DJ, Fauchald K, editors. Essays on Polychaetous annelids in memory of Dr Olga Hartman. Los Angeles: The Allan Hancock Foundation, University of Southern California. p Struck TH, Halanych KM, Purschke G Dinophilidae (Annelida) is most likely not a progenetic Eunicida; Evidence from 18S and 28S rdna. Mol Phylogenet Evol 37: Struck TH, Purschke G, Halanych KM A scaleless scale worm: molecular evidence for the phylogenetic placement of Pisione remota (Pisionidae, Annelida). Mar Biol Res 1: Struck TH, Purschke G, Halanych KM Phylogeny of Eunicida (Annelida) and exploring data congruence using a partition addition bootstrap alteration (PABA) approach. Syst Biol 55:1 20. Struck TH, Westheide W, Purschke G Progenesis in Eunicida ( Polychaeta, Annelida) separate evolutionary events? Evidence from molecular data. Mol Phylogenet Evol 25: Sverdrup HU, Johnson MW, Fleming RH The oceans. New York: Prentice-Hall. Svesnikov VA The morphology of certain eunicemorph (Polychaeta) larvae. Dokl Akad Nauk SSSR 121:695 7 (in Russian). Swedmark B Psammodriloides fauveli n. gen., n. sp. et la famille des Psammodrilidae (Polychaeta Sedentaria). Arkiv för Zoologi 12: Swedmark B The interstitial fauna of marine sand. Biol Rev Camb Philos Soc 39:1 42. Swofford DL PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, MA: Sinauer Associates. Tzetlin AB Evolution of feeding apparatus in the polychaetes of the order Capitellida. Zool Zhurnal 70:10 22 (in Russian). Warwick RM Are loriciferans paedomorphic (progenetic) priapulids? Vie et Milieu 50: Werner B Halammohydra Remane, Medusennatur und Stellung im System. Verh D Zool Kiel 1964: Westheide W Parapodrilus psammophilus nov. gen. nov. spec., eine neue Polychaeten-Gattung aus dem Mesopsammal der Nordsee. Helgoländer wissenschaftliche Meeresuntersuchungen 12: Westheide W Monographie der Gattungen Hesionides Friederich und Microphthalmus Mecznikow (Polychaeta, Hesionidae). Zeitschrift für Morphologie der Tiere 61: Westheide W Ikosipodus carolensis gen. et sp.n., an interstitial neotenic polychaete from North Carolina, U.S.A., and

11 568 Torsten H. Struck its phylogenetic relationships within Dorvilleidae. Zool Scr 11: Westheide W The concept of reproduction in polychaetes with small body size: adaptations in interstitial species. In: Pfannenstiel H-D, Fischer A, editors. Polychaete reproduction. Stuttgart: Fortschritte der Zoologie. p Westheide W Progenesis as a principle in meiofauna evolution. J Nat Hist 21: Westheide W Polychaetes: interstitial families. Oegstgeest: Universal Book Services. Westheide W The direction of evolution within the Polychaeta. J Nat Hist 31:1 15. Westheide W, Purschke G Leptonerilla diplocirrata, a new genus and species of interstitial polychaetes from the island of Hainan, south China (Nerillidae). Proc Biol Soc Wash 109: Westheide W, Rieger RM Systematics of the amphiatlantic Microphthalmus listensis species-group (Polychaeta: Hesionidae): facts and concepts for reconstruction of phylogeny and speciation. Zeitschrift für zoologische Systematik und Evolutionsforschung 25: Westheide W, Riser NW Morphology and phylogenetic relationships of the neotenic interstitial polychaete Apodotrocha progenerans n.gen.,n.sp. (Annelida). Zoomorphology 103: Wiens JJ, Bonett RM, Chippindale PT Ontogeny discombobulates phylogeny: paedomorphosis and higher-level Salamander relationships. Syst Biol 54: Wiklund H, Nygren A, Pleijel F, Sundberg P Phylogeny of Aphroditiformia (Polychaeta) based on molecular and morphological data. Mol Phylogenet Evol 37: Wolf PS A new genus and species of interstitial Sigalionidae and a report on the presence of venom glands in some scale-worm families (Annelida: Polychaeta). Proc Biol Soc Wash 99: Wolff WJ Three species of Microphthalmus (Polychaeta) new to the Netherlands. Zool Meded 43: Worsaae K, Nygren A, Rouse G, Giribet G, Persson J, Sundberg P, Pleijel F Phylogenetic position of Nerillidae and Aberranta (Polychaeta, Annelida), analysed by direct optimization of combined molecular and morphological data. Zool Scr 34: Zezina ON Deep-sea brachiopods. Their peculiarities in morphology and evolution. Sarsia 79: Zibrowius HW Review of Serpulidae from depths exceeding 2000 metres. In: Reish D, Fauchald K, editors. Essays on Polychaetous annelids in memory of Dr Olga Hartman. Los Angeles: Allan Hancock Foundation. p

On the absence of circular muscle elements in the body wall of Dysponetus pygmaeus (Chrysopetalidae, Polychaeta, Annelida)

On the absence of circular muscle elements in the body wall of Dysponetus pygmaeus (Chrysopetalidae, Polychaeta, Annelida) Blackwell Science Ltd On the absence of circular muscle elements in the body wall of Dysponetus pygmaeus (Chrysopetalidae, Polychaeta, Annelida) Alexander B. Tzetlin, Anna Zhadan, Ilia Ivanov, Monika C.

More information

Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2012 University of California, Berkeley

Integrative Biology 200A PRINCIPLES OF PHYLOGENETICS Spring 2012 University of California, Berkeley Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2012 University of California, Berkeley B.D. Mishler Feb. 7, 2012. Morphological data IV -- ontogeny & structure of plants The last frontier

More information

ESS 345 Ichthyology. Systematic Ichthyology Part II Not in Book

ESS 345 Ichthyology. Systematic Ichthyology Part II Not in Book ESS 345 Ichthyology Systematic Ichthyology Part II Not in Book Thought for today: Now, here, you see, it takes all the running you can do, to keep in the same place. If you want to get somewhere else,

More information

Reconstructing the history of lineages

Reconstructing the history of lineages Reconstructing the history of lineages Class outline Systematics Phylogenetic systematics Phylogenetic trees and maps Class outline Definitions Systematics Phylogenetic systematics/cladistics Systematics

More information

Patterns of Evolution

Patterns of Evolution Patterns of Evolution A tree that represents an estimate (hypothesis) of evolutionary relatedness is a phylogeny Classifications can be based on groupings within a phylogeny Groupings can be categorized

More information

Classifications can be based on groupings g within a phylogeny

Classifications can be based on groupings g within a phylogeny Patterns of Evolution A tree that represents an estimate (hypothesis) of evolutionary relatedness is a phylogeny Classifications can be based on groupings g within a phylogeny y Groupings can be categorized

More information

(Stevens 1991) 1. morphological characters should be assumed to be quantitative unless demonstrated otherwise

(Stevens 1991) 1. morphological characters should be assumed to be quantitative unless demonstrated otherwise Bot 421/521 PHYLOGENETIC ANALYSIS I. Origins A. Hennig 1950 (German edition) Phylogenetic Systematics 1966 B. Zimmerman (Germany, 1930 s) C. Wagner (Michigan, 1920-2000) II. Characters and character states

More information

On the ground pattern of Annelida**

On the ground pattern of Annelida** Org. Divers. Evol. 2, 181 196 (2002) Urban & Fischer Verlag http://www.urbanfischer.de/journals/ode On the ground pattern of Annelida** Günter Purschke* Spezielle Zoologie, Universität Osnabrück, Germany

More information

6. Molecular phylogeny of lugworms (Annelida, Arenicolidae) inferred from three genes

6. Molecular phylogeny of lugworms (Annelida, Arenicolidae) inferred from three genes 6. Phylogeny of Arenicolidae 98 6. Molecular phylogeny of lugworms (Annelida, Arenicolidae) inferred from three genes Abstract - Arenicolids comprise a group of 4 genera in which about 30 nominal species

More information

Classification and Phylogeny

Classification and Phylogeny Classification and Phylogeny The diversity it of life is great. To communicate about it, there must be a scheme for organization. There are many species that would be difficult to organize without a scheme

More information

Classification and Phylogeny

Classification and Phylogeny Classification and Phylogeny The diversity of life is great. To communicate about it, there must be a scheme for organization. There are many species that would be difficult to organize without a scheme

More information

Name. Ecology & Evolutionary Biology 2245/2245W Exam 2 1 March 2014

Name. Ecology & Evolutionary Biology 2245/2245W Exam 2 1 March 2014 Name 1 Ecology & Evolutionary Biology 2245/2245W Exam 2 1 March 2014 1. Use the following matrix of nucleotide sequence data and the corresponding tree to answer questions a. through h. below. (16 points)

More information

8/23/2014. Introduction to Animal Diversity

8/23/2014. Introduction to Animal Diversity Introduction to Animal Diversity Chapter 32 Objectives List the characteristics that combine to define animals Summarize key events of the Paleozoic, Mesozoic, and Cenozoic eras Distinguish between the

More information

POPULATION GENETICS Winter 2005 Lecture 17 Molecular phylogenetics

POPULATION GENETICS Winter 2005 Lecture 17 Molecular phylogenetics POPULATION GENETICS Winter 2005 Lecture 17 Molecular phylogenetics - in deriving a phylogeny our goal is simply to reconstruct the historical relationships between a group of taxa. - before we review the

More information

--Therefore, congruence among all postulated homologies provides a test of any single character in question [the central epistemological advance].

--Therefore, congruence among all postulated homologies provides a test of any single character in question [the central epistemological advance]. Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2008 University of California, Berkeley B.D. Mishler Jan. 29, 2008. The Hennig Principle: Homology, Synapomorphy, Rooting issues The fundamental

More information

Systematics - BIO 615

Systematics - BIO 615 A Knyght ther was, and that a worthy man, A Knyght ther was, and he was a worthy man, A Knyght ther was, and that a worthy man, A Knyght ther was, and he was a worthy man, A Knyght ther was, and he wasn

More information

Introduction to characters and parsimony analysis

Introduction to characters and parsimony analysis Introduction to characters and parsimony analysis Genetic Relationships Genetic relationships exist between individuals within populations These include ancestordescendent relationships and more indirect

More information

Classification, Phylogeny yand Evolutionary History

Classification, Phylogeny yand Evolutionary History Classification, Phylogeny yand Evolutionary History The diversity of life is great. To communicate about it, there must be a scheme for organization. There are many species that would be difficult to organize

More information

Phylogenetics - IB 200B 17 Feb Heterochrony & Phylogenetics

Phylogenetics - IB 200B 17 Feb Heterochrony & Phylogenetics Heterochrony & Phylogenetics All members of a monophyletic taxon share a common ancestor whose developmental pathway was modified to produce descendant morphologies. Haeckel, E. 1899 - originally a physician

More information

Lecture V Phylogeny and Systematics Dr. Kopeny

Lecture V Phylogeny and Systematics Dr. Kopeny Delivered 1/30 and 2/1 Lecture V Phylogeny and Systematics Dr. Kopeny Lecture V How to Determine Evolutionary Relationships: Concepts in Phylogeny and Systematics Textbook Reading: pp 425-433, 435-437

More information

Systematics Lecture 3 Characters: Homology, Morphology

Systematics Lecture 3 Characters: Homology, Morphology Systematics Lecture 3 Characters: Homology, Morphology I. Introduction Nearly all methods of phylogenetic analysis rely on characters as the source of data. A. Character variation is coded into a character-by-taxon

More information

Letter to the Editor. The Effect of Taxonomic Sampling on Accuracy of Phylogeny Estimation: Test Case of a Known Phylogeny Steven Poe 1

Letter to the Editor. The Effect of Taxonomic Sampling on Accuracy of Phylogeny Estimation: Test Case of a Known Phylogeny Steven Poe 1 Letter to the Editor The Effect of Taxonomic Sampling on Accuracy of Phylogeny Estimation: Test Case of a Known Phylogeny Steven Poe 1 Department of Zoology and Texas Memorial Museum, University of Texas

More information

Integrative Biology 200 "PRINCIPLES OF PHYLOGENETICS" Spring 2018 University of California, Berkeley

Integrative Biology 200 PRINCIPLES OF PHYLOGENETICS Spring 2018 University of California, Berkeley Integrative Biology 200 "PRINCIPLES OF PHYLOGENETICS" Spring 2018 University of California, Berkeley B.D. Mishler Feb. 14, 2018. Phylogenetic trees VI: Dating in the 21st century: clocks, & calibrations;

More information

. I 41 ~:;~.. ,,:i, ~""".' to\\y 1. l'.-

. I 41 ~:;~.. ,,:i, ~.' to\\y 1. l'.- ~:;~.. t,,:i,,. ~""".'. I 41 to\\y 1 l'.- 05 UNIVERSITY OF WASHINGTON DEPARTMENT OF OOEANOORAPHY Seattle, Washington 98105 Technical Reports Nos. 136, 137, 138, 139, 140, and 141 A COMPILATION OF ARTICLES

More information

Need for systematics. Applications of systematics. Linnaeus plus Darwin. Approaches in systematics. Principles of cladistics

Need for systematics. Applications of systematics. Linnaeus plus Darwin. Approaches in systematics. Principles of cladistics Topics Need for systematics Applications of systematics Linnaeus plus Darwin Approaches in systematics Principles of cladistics Systematics pp. 474-475. Systematics - Study of diversity and evolutionary

More information

Biologists have used many approaches to estimating the evolutionary history of organisms and using that history to construct classifications.

Biologists have used many approaches to estimating the evolutionary history of organisms and using that history to construct classifications. Phylogenetic Inference Biologists have used many approaches to estimating the evolutionary history of organisms and using that history to construct classifications. Willi Hennig developed d the techniques

More information

Chapter 26 Phylogeny and the Tree of Life

Chapter 26 Phylogeny and the Tree of Life Chapter 26 Phylogeny and the Tree of Life Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence from morphological, biochemical, and gene sequence

More information

Non-independence in Statistical Tests for Discrete Cross-species Data

Non-independence in Statistical Tests for Discrete Cross-species Data J. theor. Biol. (1997) 188, 507514 Non-independence in Statistical Tests for Discrete Cross-species Data ALAN GRAFEN* AND MARK RIDLEY * St. John s College, Oxford OX1 3JP, and the Department of Zoology,

More information

The Ecology of Meiofauna and the Adaption to its Habitat. Marinbiologische Seminar Raimund Schnegg

The Ecology of Meiofauna and the Adaption to its Habitat. Marinbiologische Seminar Raimund Schnegg The Ecology of Meiofauna and the Adaption to its Habitat Marinbiologische Seminar 17.06.2014 Raimund Schnegg What is the meiofauna? Members of the zoobenthos defined by mesh size of sieves: >1 mm = macrofauna

More information

Lecture 6 Phylogenetic Inference

Lecture 6 Phylogenetic Inference Lecture 6 Phylogenetic Inference From Darwin s notebook in 1837 Charles Darwin Willi Hennig From The Origin in 1859 Cladistics Phylogenetic inference Willi Hennig, Cladistics 1. Clade, Monophyletic group,

More information

Phylogeny and systematics. Why are these disciplines important in evolutionary biology and how are they related to each other?

Phylogeny and systematics. Why are these disciplines important in evolutionary biology and how are they related to each other? Phylogeny and systematics Why are these disciplines important in evolutionary biology and how are they related to each other? Phylogeny and systematics Phylogeny: the evolutionary history of a species

More information

An Introduction to the Invertebrates (part 4?!) Annelida & Nematoda. Reference: Chapter 33.3, 33.4

An Introduction to the Invertebrates (part 4?!) Annelida & Nematoda. Reference: Chapter 33.3, 33.4 An Introduction to the Invertebrates (part 4?!) Annelida & Nematoda Reference: Chapter 33.3, 33.4 More Relationships Slime molds Tubulinids Entamoebas Nucleariids Fungi Choanoflagellates Animals Excavata

More information

Patterns of evolution

Patterns of evolution To branch or not to branch Patterns of evolution Chapter 3 Cladogenesis lineages branch into two or more lines Anagenesis evolutionary change in a lineage without branching Anagenesis and Cladogenesis

More information

Chapter 26: Phylogeny and the Tree of Life Phylogenies Show Evolutionary Relationships

Chapter 26: Phylogeny and the Tree of Life Phylogenies Show Evolutionary Relationships Chapter 26: Phylogeny and the Tree of Life You Must Know The taxonomic categories and how they indicate relatedness. How systematics is used to develop phylogenetic trees. How to construct a phylogenetic

More information

Lecture 11 Friday, October 21, 2011

Lecture 11 Friday, October 21, 2011 Lecture 11 Friday, October 21, 2011 Phylogenetic tree (phylogeny) Darwin and classification: In the Origin, Darwin said that descent from a common ancestral species could explain why the Linnaean system

More information

SPECIATION. REPRODUCTIVE BARRIERS PREZYGOTIC: Barriers that prevent fertilization. Habitat isolation Populations can t get together

SPECIATION. REPRODUCTIVE BARRIERS PREZYGOTIC: Barriers that prevent fertilization. Habitat isolation Populations can t get together SPECIATION Origin of new species=speciation -Process by which one species splits into two or more species, accounts for both the unity and diversity of life SPECIES BIOLOGICAL CONCEPT Population or groups

More information

I. Short Answer Questions DO ALL QUESTIONS

I. Short Answer Questions DO ALL QUESTIONS EVOLUTION 313 FINAL EXAM Part 1 Saturday, 7 May 2005 page 1 I. Short Answer Questions DO ALL QUESTIONS SAQ #1. Please state and BRIEFLY explain the major objectives of this course in evolution. Recall

More information

Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut

Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut University-Egypt Phylogenetic analysis Phylogenetic Basics: Biological

More information

UoN, CAS, DBSC BIOL102 lecture notes by: Dr. Mustafa A. Mansi. The Phylogenetic Systematics (Phylogeny and Systematics)

UoN, CAS, DBSC BIOL102 lecture notes by: Dr. Mustafa A. Mansi. The Phylogenetic Systematics (Phylogeny and Systematics) - Phylogeny? - Systematics? The Phylogenetic Systematics (Phylogeny and Systematics) - Phylogenetic systematics? Connection between phylogeny and classification. - Phylogenetic systematics informs the

More information

Integrating Fossils into Phylogenies. Throughout the 20th century, the relationship between paleontology and evolutionary biology has been strained.

Integrating Fossils into Phylogenies. Throughout the 20th century, the relationship between paleontology and evolutionary biology has been strained. IB 200B Principals of Phylogenetic Systematics Spring 2011 Integrating Fossils into Phylogenies Throughout the 20th century, the relationship between paleontology and evolutionary biology has been strained.

More information

Biology 211 (2) Week 1 KEY!

Biology 211 (2) Week 1 KEY! Biology 211 (2) Week 1 KEY Chapter 1 KEY FIGURES: 1.2, 1.3, 1.4, 1.5, 1.6, 1.7 VOCABULARY: Adaptation: a trait that increases the fitness Cells: a developed, system bound with a thin outer layer made of

More information

Current status of annelid phylogeny

Current status of annelid phylogeny Org Divers Evol (2016) 16:345 362 DOI 10.1007/s13127-016-0265-7 REVIEW Current status of annelid phylogeny Anne Weigert 1 & Christoph Bleidorn 1,2 Received: 27 August 2015 /Accepted: 16 January 2016 /Published

More information

Phylogenetic Analysis

Phylogenetic Analysis Phylogenetic Analysis Aristotle Through classification, one might discover the essence and purpose of species. Nelson & Platnick (1981) Systematics and Biogeography Carl Linnaeus Swedish botanist (1700s)

More information

Dr. Amira A. AL-Hosary

Dr. Amira A. AL-Hosary Phylogenetic analysis Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut University-Egypt Phylogenetic Basics: Biological

More information

Chapter Chemical Uniqueness 1/23/2009. The Uses of Principles. Zoology: the Study of Animal Life. Fig. 1.1

Chapter Chemical Uniqueness 1/23/2009. The Uses of Principles. Zoology: the Study of Animal Life. Fig. 1.1 Fig. 1.1 Chapter 1 Life: Biological Principles and the Science of Zoology BIO 2402 General Zoology Copyright The McGraw Hill Companies, Inc. Permission required for reproduction or display. The Uses of

More information

Chapter 19: Taxonomy, Systematics, and Phylogeny

Chapter 19: Taxonomy, Systematics, and Phylogeny Chapter 19: Taxonomy, Systematics, and Phylogeny AP Curriculum Alignment Chapter 19 expands on the topics of phylogenies and cladograms, which are important to Big Idea 1. In order for students to understand

More information

What is Phylogenetics

What is Phylogenetics What is Phylogenetics Phylogenetics is the area of research concerned with finding the genetic connections and relationships between species. The basic idea is to compare specific characters (features)

More information

Heterochrony repolarized: a phylogenetic analysis of developmental timing in plethodontid salamanders

Heterochrony repolarized: a phylogenetic analysis of developmental timing in plethodontid salamanders Bonett et al. EvoDevo 2014, 5:27 RESEARCH Open Access Heterochrony repolarized: a phylogenetic analysis of developmental timing in plethodontid salamanders Ronald M Bonett *, Michael A Steffen and Grant

More information

Blastocoelomates. General Features. General Features. Phylogenetic Relationships. Phylogenetic Relationships

Blastocoelomates. General Features. General Features. Phylogenetic Relationships. Phylogenetic Relationships General Features Blastocoelomates 1. A large and heterogeneous group. a. also known as "Aschelminthes" - cavity worms. General Features b. Nearly any source you consult will have a different arrangement

More information

C3020 Molecular Evolution. Exercises #3: Phylogenetics

C3020 Molecular Evolution. Exercises #3: Phylogenetics C3020 Molecular Evolution Exercises #3: Phylogenetics Consider the following sequences for five taxa 1-5 and the known outgroup O, which has the ancestral states (note that sequence 3 has changed from

More information

"PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION" Integrative Biology 200B Spring 2011 University of California, Berkeley

PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION Integrative Biology 200B Spring 2011 University of California, Berkeley "PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION" Integrative Biology 200B Spring 2011 University of California, Berkeley B.D. Mishler March 31, 2011. Reticulation,"Phylogeography," and Population Biology:

More information

Phylogenetic relationship among S. castellii, S. cerevisiae and C. glabrata.

Phylogenetic relationship among S. castellii, S. cerevisiae and C. glabrata. Supplementary Note S2 Phylogenetic relationship among S. castellii, S. cerevisiae and C. glabrata. Phylogenetic trees reconstructed by a variety of methods from either single-copy orthologous loci (Class

More information

Systematics - Bio 615

Systematics - Bio 615 Bayesian Phylogenetic Inference 1. Introduction, history 2. Advantages over ML 3. Bayes Rule 4. The Priors 5. Marginal vs Joint estimation 6. MCMC Derek S. Sikes University of Alaska 7. Posteriors vs Bootstrap

More information

Phylogenetics - IB 200B 8 Feb Heterochrony & Phylogenetics

Phylogenetics - IB 200B 8 Feb Heterochrony & Phylogenetics Heterochrony & Phylogenetics All members of a monophyletic taxon share a common ancestor whose developmental pathway was modified to produce descendant morphologies. Haeckel, E. 1899 - originally a physician

More information

8/23/2014. Phylogeny and the Tree of Life

8/23/2014. Phylogeny and the Tree of Life Phylogeny and the Tree of Life Chapter 26 Objectives Explain the following characteristics of the Linnaean system of classification: a. binomial nomenclature b. hierarchical classification List the major

More information

CHAPTER 26 PHYLOGENY AND THE TREE OF LIFE Connecting Classification to Phylogeny

CHAPTER 26 PHYLOGENY AND THE TREE OF LIFE Connecting Classification to Phylogeny CHAPTER 26 PHYLOGENY AND THE TREE OF LIFE Connecting Classification to Phylogeny To trace phylogeny or the evolutionary history of life, biologists use evidence from paleontology, molecular data, comparative

More information

Phylogenetic Analysis

Phylogenetic Analysis Phylogenetic Analysis Aristotle Through classification, one might discover the essence and purpose of species. Nelson & Platnick (1981) Systematics and Biogeography Carl Linnaeus Swedish botanist (1700s)

More information

Phylogenetic Analysis

Phylogenetic Analysis Phylogenetic Analysis Aristotle Through classification, one might discover the essence and purpose of species. Nelson & Platnick (1981) Systematics and Biogeography Carl Linnaeus Swedish botanist (1700s)

More information

Phylogeny 9/8/2014. Evolutionary Relationships. Data Supporting Phylogeny. Chapter 26

Phylogeny 9/8/2014. Evolutionary Relationships. Data Supporting Phylogeny. Chapter 26 Phylogeny Chapter 26 Taxonomy Taxonomy: ordered division of organisms into categories based on a set of characteristics used to assess similarities and differences Carolus Linnaeus developed binomial nomenclature,

More information

Microbial Taxonomy and the Evolution of Diversity

Microbial Taxonomy and the Evolution of Diversity 19 Microbial Taxonomy and the Evolution of Diversity Copyright McGraw-Hill Global Education Holdings, LLC. Permission required for reproduction or display. 1 Taxonomy Introduction to Microbial Taxonomy

More information

Supplementary Figures. Supplementary Figure S1. Cladogram showing distribution of sternal features in Archosauria.

Supplementary Figures. Supplementary Figure S1. Cladogram showing distribution of sternal features in Archosauria. Supplementary Information Insight into the Early Evolution of the Avian Sternum from Juvenile Enantiornithines Xiaoting Zheng, Xiaoli Wang, Jingmai O Connor, Zhonghe Zhou. Supplementary Figures Supplementary

More information

Consensus Methods. * You are only responsible for the first two

Consensus Methods. * You are only responsible for the first two Consensus Trees * consensus trees reconcile clades from different trees * consensus is a conservative estimate of phylogeny that emphasizes points of agreement * philosophy: agreement among data sets is

More information

Evidence of a dorsal pharynx in the marine polychaete Capitella teleta (Polychaeta: Capitellidae)

Evidence of a dorsal pharynx in the marine polychaete Capitella teleta (Polychaeta: Capitellidae) Zoosymposia 2: 317 328 (2009) www.mapress.com/zoosymposia/ Copyright 2009 Magnolia Press ISSN 1178-9905 (print edition) ZOOSYMPOSIA ISSN 1178-9913 (online edition) Evidence of a dorsal pharynx in the marine

More information

Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data

Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data Lin- Blackwell Science, LtdOxford, UKZOJZoological Journal of the Linnean Society0024-4082The nean Society of London, 2005? 2005 144? 5973 Original Article PHYLOGENY AND EVOLUTION OF ORBINIIDAEC. BLEIDORN

More information

Bio 175 FALL 2004 EVOLUTION FINAL EXAMINATION Monday December 6, 2004

Bio 175 FALL 2004 EVOLUTION FINAL EXAMINATION Monday December 6, 2004 1 Bio 175 FALL 2004 EVOLUTION FINAL EXAMINATION Monday December 6, 2004 GENERAL INSTRUCTIONS 1. Write your NAME ON EVERY PAGE and ANSWER ONLY IN THE SPACE PROVIDED. 2. Please read the question carefully

More information

LECTURE 08. Today: 3/3/2014

LECTURE 08. Today: 3/3/2014 Spring 2014: Mondays 10:15am 12:05pm (Fox Hall, Room 204) Instructor: D. Magdalena Sorger Website: theantlife.com/teaching/bio295-islands-evolution LECTURE 08 Today: Quiz follow up Follow up on minute

More information

18.4 Embryonic development involves cell division, cell differentiation, and morphogenesis

18.4 Embryonic development involves cell division, cell differentiation, and morphogenesis 18.4 Embryonic development involves cell division, cell differentiation, and morphogenesis An organism arises from a fertilized egg cell as the result of three interrelated processes: cell division, cell

More information

Evolutionary trends. Horse size increased steadily. Phylogeny and the fossil record

Evolutionary trends. Horse size increased steadily. Phylogeny and the fossil record Phylogeny and the fossil record The fossil record: trends and rates Chapter 4 Strong correspondence between phylogenetic branching order and order of appearance in the fossil record Evolutionary trends

More information

Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2012 University of California, Berkeley

Integrative Biology 200A PRINCIPLES OF PHYLOGENETICS Spring 2012 University of California, Berkeley Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2012 University of California, Berkeley B.D. Mishler April 12, 2012. Phylogenetic trees IX: Below the "species level;" phylogeography; dealing

More information

Big Idea #1: The process of evolution drives the diversity and unity of life

Big Idea #1: The process of evolution drives the diversity and unity of life BIG IDEA! Big Idea #1: The process of evolution drives the diversity and unity of life Key Terms for this section: emigration phenotype adaptation evolution phylogenetic tree adaptive radiation fertility

More information

"PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION" Integrative Biology 200B Spring 2009 University of California, Berkeley

PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION Integrative Biology 200B Spring 2009 University of California, Berkeley "PRINCIPLES OF PHYLOGENETICS: ECOLOGY AND EVOLUTION" Integrative Biology 200B Spring 2009 University of California, Berkeley B.D. Mishler Jan. 22, 2009. Trees I. Summary of previous lecture: Hennigian

More information

How to read and make phylogenetic trees Zuzana Starostová

How to read and make phylogenetic trees Zuzana Starostová How to read and make phylogenetic trees Zuzana Starostová How to make phylogenetic trees? Workflow: obtain DNA sequence quality check sequence alignment calculating genetic distances phylogeny estimation

More information

Unit 9: Evolution Guided Reading Questions (80 pts total)

Unit 9: Evolution Guided Reading Questions (80 pts total) Name: AP Biology Biology, Campbell and Reece, 7th Edition Adapted from chapter reading guides originally created by Lynn Miriello Unit 9: Evolution Guided Reading Questions (80 pts total) Chapter 22 Descent

More information

Consensus methods. Strict consensus methods

Consensus methods. Strict consensus methods Consensus methods A consensus tree is a summary of the agreement among a set of fundamental trees There are many consensus methods that differ in: 1. the kind of agreement 2. the level of agreement Consensus

More information

A data based parsimony method of cophylogenetic analysis

A data based parsimony method of cophylogenetic analysis Blackwell Science, Ltd A data based parsimony method of cophylogenetic analysis KEVIN P. JOHNSON, DEVIN M. DROWN & DALE H. CLAYTON Accepted: 20 October 2000 Johnson, K. P., Drown, D. M. & Clayton, D. H.

More information

1/27/2010. Systematics and Phylogenetics of the. An Introduction. Taxonomy and Systematics

1/27/2010. Systematics and Phylogenetics of the. An Introduction. Taxonomy and Systematics Systematics and Phylogenetics of the Amphibia: An Introduction Taxonomy and Systematics Taxonomy, the science of describing biodiversity, mainly naming unnamed species, and arranging the diversity into

More information

PHYLOGENY & THE TREE OF LIFE

PHYLOGENY & THE TREE OF LIFE PHYLOGENY & THE TREE OF LIFE PREFACE In this powerpoint we learn how biologists distinguish and categorize the millions of species on earth. Early we looked at the process of evolution here we look at

More information

The practice of naming and classifying organisms is called taxonomy.

The practice of naming and classifying organisms is called taxonomy. Chapter 18 Key Idea: Biologists use taxonomic systems to organize their knowledge of organisms. These systems attempt to provide consistent ways to name and categorize organisms. The practice of naming

More information

Arthropoda ARTHRO JOINTED PODA FEET

Arthropoda ARTHRO JOINTED PODA FEET Arthropoda ARTHRO JOINTED PODA FEET The arthropods are a group of animals which has attained the greatest biological success largest number of species and individuals and occupy the greatest number of

More information

Chapter 27: Evolutionary Genetics

Chapter 27: Evolutionary Genetics Chapter 27: Evolutionary Genetics Student Learning Objectives Upon completion of this chapter you should be able to: 1. Understand what the term species means to biology. 2. Recognize the various patterns

More information

Evolutionary Developmental Biology

Evolutionary Developmental Biology Evolutionary Developmental Biology It all started with the Swiss professor Louis Agassiz (1807-1873), who emigrated to the US and became a Harvard prof... EVO a.k.a. EVO-DEVO DEVO Hence, the embryos of

More information

Chapter 22: Descent with Modification 1. BRIEFLY summarize the main points that Darwin made in The Origin of Species.

Chapter 22: Descent with Modification 1. BRIEFLY summarize the main points that Darwin made in The Origin of Species. AP Biology Chapter Packet 7- Evolution Name Chapter 22: Descent with Modification 1. BRIEFLY summarize the main points that Darwin made in The Origin of Species. 2. Define the following terms: a. Natural

More information

X X (2) X Pr(X = x θ) (3)

X X (2) X Pr(X = x θ) (3) Notes for 848 lecture 6: A ML basis for compatibility and parsimony Notation θ Θ (1) Θ is the space of all possible trees (and model parameters) θ is a point in the parameter space = a particular tree

More information

A new branchiate hesionid polychaete (Annelida, Hesionidae) from New Caledonia

A new branchiate hesionid polychaete (Annelida, Hesionidae) from New Caledonia A new branchiate hesionid polychaete (Annelida, Hesionidae) from New Caledonia Christine RUTA Departamento de Zoologia, Laboratório de Polychaeta, Universidade Federal do Rio de Janeiro, Sala A0-108, Bloco

More information

Connectivity using DNA the basics

Connectivity using DNA the basics Connectivity using DNA the basics Greg Rouse Scripps Institution of Oceanography WORKSHOP ON THE DESIGN OF IMPACT REFERENCE ZONES AND PRESERVATION REFERENCE ZONES IN DEEP-SEA MINING CONTRACT AREAS Sept

More information

Combining Data Sets with Different Phylogenetic Histories

Combining Data Sets with Different Phylogenetic Histories Syst. Biol. 47(4):568 581, 1998 Combining Data Sets with Different Phylogenetic Histories JOHN J. WIENS Section of Amphibians and Reptiles, Carnegie Museum of Natural History, Pittsburgh, Pennsylvania

More information

Using phylogenetics to estimate species divergence times... Basics and basic issues for Bayesian inference of divergence times (plus some digression)

Using phylogenetics to estimate species divergence times... Basics and basic issues for Bayesian inference of divergence times (plus some digression) Using phylogenetics to estimate species divergence times... More accurately... Basics and basic issues for Bayesian inference of divergence times (plus some digression) "A comparison of the structures

More information

Introduction to Biosystematics - Zool 575

Introduction to Biosystematics - Zool 575 Introduction to Biosystematics Lecture - Outline. Four steps in Phylogenetic Inference 2. Data - Selection 3. - What is it? - How does one recognize it? 4.. haracter (data) selection (not too fast, not

More information

Patterns in Evolution - Novelty

Patterns in Evolution - Novelty Patterns in Evolution - Novelty Uses of Phylogenetic Analysis Allows mapping order of character state changes Documents evolutionary trends in development Reveals that Homoplasy is common Can attempt to

More information

Patterns in Evolution - Novelty. Uses of Phylogenetic Analysis. Allows mapping order of character state changes

Patterns in Evolution - Novelty. Uses of Phylogenetic Analysis. Allows mapping order of character state changes Patterns in Evolution - Novelty Uses of Phylogenetic Analysis Allows mapping order of character state changes Documents evolutionary trends in development Reveals that Homoplasy is common Can attempt to

More information

BIOLOGY 432 Midterm I - 30 April PART I. Multiple choice questions (3 points each, 42 points total). Single best answer.

BIOLOGY 432 Midterm I - 30 April PART I. Multiple choice questions (3 points each, 42 points total). Single best answer. BIOLOGY 432 Midterm I - 30 April 2012 Name PART I. Multiple choice questions (3 points each, 42 points total). Single best answer. 1. Over time even the most highly conserved gene sequence will fix mutations.

More information

Unit 7: Evolution Guided Reading Questions (80 pts total)

Unit 7: Evolution Guided Reading Questions (80 pts total) AP Biology Biology, Campbell and Reece, 10th Edition Adapted from chapter reading guides originally created by Lynn Miriello Name: Unit 7: Evolution Guided Reading Questions (80 pts total) Chapter 22 Descent

More information

Effects of Gap Open and Gap Extension Penalties

Effects of Gap Open and Gap Extension Penalties Brigham Young University BYU ScholarsArchive All Faculty Publications 200-10-01 Effects of Gap Open and Gap Extension Penalties Hyrum Carroll hyrumcarroll@gmail.com Mark J. Clement clement@cs.byu.edu See

More information

CHAPTER 10 Taxonomy and Phylogeny of Animals

CHAPTER 10 Taxonomy and Phylogeny of Animals CHAPTER 10 Taxonomy and Phylogeny of Animals 10-1 10-2 Copyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display. Linnaeus and Taxonomy More than 1.5 million species of

More information

Phylogenetic methods in molecular systematics

Phylogenetic methods in molecular systematics Phylogenetic methods in molecular systematics Niklas Wahlberg Stockholm University Acknowledgement Many of the slides in this lecture series modified from slides by others www.dbbm.fiocruz.br/james/lectures.html

More information

Evolutionary Developmental Biology

Evolutionary Developmental Biology Evolutionary Developmental Biology a.k.a. EVO-DEVO Paedomorphosis is common among salamanders. Note how this hellbender (top) and mudpuppy (bottom) both have gills, paddle tails, and weaker limbs... Top:

More information

OEB 181: Systematics. Catalog Number: 5459

OEB 181: Systematics. Catalog Number: 5459 OEB 181: Systematics Catalog Number: 5459 Tu & Th, 10-11:30 am, MCZ 202 Wednesdays, 2-4 pm, Science Center 418D Gonzalo Giribet (Biolabs 1119, ggiribet@oeb.harvard.edu) Charles Marshall (MCZ 111A, cmarshall@fas.harvard.edu

More information

Animal Diversity. Features shared by all animals. Animals are multicellular, heterotrophic eukaryotes with tissues that develop from embryonic layers

Animal Diversity. Features shared by all animals. Animals are multicellular, heterotrophic eukaryotes with tissues that develop from embryonic layers Animal Diversity Animals are multicellular, heterotrophic eukaryotes with tissues that develop from embryonic layers Nutritional mode Ingest food and use enzymes in the body to digest Cell structure and

More information

Mollusca: General Characteristics

Mollusca: General Characteristics Mollusca: General Characteristics Molluscan Taxonomic Classes Polyplacophora Cephalopoda Bivalvia 7,650 sp Other 5 Classes ~1100 Gastropoda Scaphopoda Gastropoda 40,000 sp and Aplacophora Monoplacophora

More information

Concepts and Methods in Molecular Divergence Time Estimation

Concepts and Methods in Molecular Divergence Time Estimation Concepts and Methods in Molecular Divergence Time Estimation 26 November 2012 Prashant P. Sharma American Museum of Natural History Overview 1. Why do we date trees? 2. The molecular clock 3. Local clocks

More information