ROI Reconstruction in CT
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1 Reconstruction in CT From Tomo reconstruction in the 21st centery, IEEE Sig. Proc. Magazine (R.Clackdoyle M.Defrise) L. Desbat TIMC-IMAG September 10, 2013 L. Desbat Reconstruction in CT
2 Outline 1 CT Radiology 2 Radon Transform 3 reconstriction Motivations parallel Hilbert Projection Equality DBP-H Inversion L. Desbat Reconstruction in CT
3 CT Radiology CT scanner: principle L. Desbat Reconstruction in CT
4 X-ray attenuation CT Radiology I D I S Source I D Detector L. Desbat Reconstruction in CT l
5 X-ray attenuation CT Radiology I D I S2 µ 1 I S Source I D Detector e L. Desbat Reconstruction in CT e l
6 X-ray attenuation CT Radiology I D I S2 µ 1 I S Source I D Detector I S 2 2 e e 2e L. Desbat Reconstruction in CT l
7 X-ray attenuation CT Radiology I D I S2 µ 1 I S Source I D Detector I S 2 2 e I S 2 3 e 2e L. Desbat Reconstruction in CT 3e l
8 X-ray attenuation CT Radiology I D I S2 µ 1 I S Source I D Detector I S 2 2 e I S 2 3 I S 2 4 e 2e L. Desbat Reconstruction in CT 3e 4e l
9 X-ray attenuation CT Radiology I D I S Source I D Detector L. Desbat Reconstruction in CT l
10 X-ray attenuation CT Radiology I D I S2 µ 2 I S Source I D Detector e e L. Desbat Reconstruction in CT l
11 X-ray attenuation CT Radiology I D I S2 µ 2 I S Source I D Detector I S 2 2 e e 2e L. Desbat Reconstruction in CT l
12 X-ray attenuation CT Radiology I D I S2 µ 2 I S Source I D Detector I S 2 2 e I S 2 3 e 2e 3e L. Desbat Reconstruction in CT l
13 CT Radiology X-ray attenuation I D I S2 µ 2 I S Source I D Detector I S 2 2 e I S 2 3 I S 2 4 e 2e 3e 4e L. Desbat Reconstruction in CT l
14 X-ray attenuation CT Radiology I S I D Source Detector L. Desbat Reconstruction in CT
15 X-ray attenuation CT Radiology Lambert-Beer s Law I D (x) = I S e µl I S : intensité initiale µ : coefficient d atténuation I S µ I D l : épaisseur du tissus Source Detector l L. Desbat Reconstruction in CT
16 X-ray attenuation CT Radiology Lambert-Beer s Law I D = I S e (µ 1l 1 +µ 2 l 2 +µ 3 l 3 ) µ 1 µ 2 µ 3 I D = I S e i µ i dl i I S Source I D Detector I D = I S e D S µ(l)dl l1 l2 l3 L. Desbat Reconstruction in CT
17 x-ray image formation CT Radiology Metal Bone Fat tissues Water and soft tissues Air L. Desbat Reconstruction in CT
18 From Radiology to Tomography Radon Transform I D = I S e D S µ(l)dl ( ) D ID ln = µ(l)dl With a CT we measure the integral of µ over lines I S S L. Desbat Reconstruction in CT
19 Radon Transform parametrization e2 Ω O e1 L. Desbat Reconstruction in CT
20 Radon Transform parametrization x D Detector e2 Ω O e1 Source x S L. Desbat Reconstruction in CT
21 Radon Transform parametrization ζ(ϕ) x D Detector e2 Ω θ(ϕ) φ [0, 2π[, s R ϕ p(φ, s) = Rµ(φ, s) = R µ (sθ(φ) + lζ(φ)) dl s O e1 Source x S L. Desbat Reconstruction in CT
22 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
23 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
24 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
25 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
26 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
27 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
28 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
29 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
30 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
31 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
32 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
33 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
34 Radon Transform ζ(ϕ) e2 Ω θ(ϕ) ϕ O e1 L. Desbat Reconstruction in CT
35 Radon Transform e2 θ(ϕ) Ω ζ(ϕ) ϕ O e1 L. Desbat Reconstruction in CT
36 Radon Transform θ(ϕ) e2 Ω ζ(ϕ) O ϕ e1 L. Desbat Reconstruction in CT
37 Radon Transform θ(ϕ) e2 Ω ϕ ζ(ϕ) O e1 L. Desbat Reconstruction in CT
38 Radon Transform θ(ϕ) e2 Ω ϕ O e1 ζ(ϕ) L. Desbat Reconstruction in CT
39 Radon Transform e2 Ω θ(ϕ) ϕ O e1 ζ(ϕ) L. Desbat Reconstruction in CT
40 ζ(ϕ) L. Desbat Reconstruction in CT Radon Transform e2 Ω θ(ϕ) ϕ O e1
41 ζ(ϕ) L. Desbat Reconstruction in CT Radon Transform e2 Ω θ(ϕ) ϕ O e1
42 Radon Transform e2 Ω θ(ϕ) O ϕ e1 ζ(ϕ) L. Desbat Reconstruction in CT
43 Center Slice Theorem Definition R θ µf (s) def = Rµf (θ, s) (1) Theorem Let µ L 1 (R 2 ) then R θ µ(σ) = ˆµ(σθ) L. Desbat Reconstruction in CT
44 Proof of Center Slice Theorem Proof. R θ µ(σ) = R θ µ(s)e 2iπσs ds R = µ (sθ + lζ) dle 2iπσs ds R R = µ(x)e 2iπσθ x dx R 2 = ˆµ(σθ) where we made the change of variables (s, l) to (x 1, x 2 ) i.e. x = sθ + lζ. This is a rotation thus dlds = dx 1 dx 2 L. Desbat Reconstruction in CT
45 Filtered Back Projection Theorem Let µ L 1 (R 2 ) sufficiently smooth then π µ(x) = R θ µ(σ) σ e 2iπσx θ dσdφ 0 R L. Desbat Reconstruction in CT
46 Filtered Back Projection, proof Proof. µ(x) = = = ˆµ(ξ)e 2iπξ x dξ R 2 ˆµ(σθ)e 2iπσθ x σ dσdφ 0 R R θ µ(σ) σ e 2iπσθ x dσdφ π π 0 R where we have made the polar change of variable ξ = σθ(φ), (φ, σ) [0π[ R, thus dξ 1 dξ 2 = σ dσdφ, and we have used theorem 2. L. Desbat Reconstruction in CT
47 Non Local Filter We define p H the Hilbert transform of the parallel projection p p H (φ, s) = + p(φ, t)h(s t)dt where h(u) = 1 πu and ĥ(σ) = isgn(σ) (distribution). The ramp filtering p R of p is p R (φ, s) = 1 2π s p H (φ, s) The filter p φ (s) p F φ (σ) p filter φ (σ) σ p F 1 φfiltered (s) is non local!!! σ = 1 2π (2iπσ) ( isgn(σ)) is the Hilbert filtering composed by the derivation. L. Desbat Reconstruction in CT
48 geometry α ζ(α) α v(t) Figure: The variables (t, α) L. Desbat Reconstruction in CT
49 geometry We first define the source trajectory along a curve v : C R 2 t v(t) The fan-beam data are then defined by We remark that g (v t, α) = + 0 µ (v t + lζ(α)) dl (2) p(φ, s) = g(v t, φ) + g(v t, φ + π) where s = v t θ(φ) L. Desbat Reconstruction in CT
50 Inversion We consider the circular trajectory, v t = ( R v cos t, R v sin t), Theorem Let µ L 1 (R 2 ) sufficiently smooth then where µ(x) = 1 2 g WF (v t, φ) = 2π 0 t+π/2 t π/2 where r is the ramp filter (ˆr(σ) = σ ). Proof... change of variables 1 x v t 2 g WF (v t, arg(x v t )) dt R v cos(ψ t)g(v t, ψ)r (sin(φ ψ)) dψ L. Desbat Reconstruction in CT
51 Short Scan Figure: Short scan with (Parker) weight is possible... L. Desbat Reconstruction in CT
52 Trajectories, small detectors Motivations parallel Hilbert Projection Equality DBP-H Inversion Figure: Small detector yields truncated data. L. Desbat Reconstruction in CT
53 Hilbert and Motivations parallel Hilbert Projection Equality DBP-H Inversion We define g H the Hilbert transform of the fan beam projection g g H (v t, φ) = 2π 0 g H (v t, ψ)h (sin(φ ψ)) dψ where h(u) = 1 πu L. Desbat Reconstruction in CT
54 Motivations parallel Hilbert Projection Equality DBP-H Inversion The parallel Hilbert Projection Equality Theorem p H (φ, v t θ) = g H (v t, φ) (3) (idea compute p H (φ, s) from g H (v t, φ) with v t θ = s) v(λ) L. Desbat Reconstruction in CT
55 New Reconstruction Conditions Motivations parallel Hilbert Projection Equality DBP-H Inversion Recall with p R (φ, s) = 1 2π s p H (φ, s) p H (φ, s) = g H (v t, φ) Theorem The point x can be reconstructed from FB non truncated projections provided a fan beam vertex can be found on each line passing through x. L. Desbat Reconstruction in CT
56 New Reconstruction Formula Motivations parallel Hilbert Projection Equality DBP-H Inversion µ(x) = 1 2 where C 1 x v t w (v t, arg(x v t )) g F (v t, arg(x v t )) dt g F (v t, φ) = 1 2π where h is the hilbert filter. t+π/2 t π/2 h (sin(ψ φ)) g t (v t, ψ)dψ L. Desbat Reconstruction in CT
57 Very Short Scan Motivations parallel Hilbert Projection Equality DBP-H Inversion Figure: Very Short Scan... L. Desbat Reconstruction in CT
58 Virtual Fean Beam Motivations parallel Hilbert Projection Equality DBP-H Inversion Figure: Data truncation: spine... L. Desbat Reconstruction in CT
59 Idea Motivations parallel Hilbert Projection Equality DBP-H Inversion The idea of the Differentiated Backprojection is to compute the Hilbert transform of µ along a direction α from the back projection of the devivation of the projection. µ is then reconstructed from the inversion of the Hilbert transform. L. Desbat Reconstruction in CT
60 Truncated projections Motivations parallel Hilbert Projection Equality DBP-H Inversion Figure: Data truncation: spine... L. Desbat Reconstruction in CT
Sampling in tomography
in tomography Echantillonnage en tomographie L. Desbat TIMC-IMAG, UMR 5525, UJF-Grenoble 1 15 June 2012 L. Desbat in tomography Outline CT, Radon transform and its inversion 1 CT, Radon transform and its
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