Student-t Process as Alternative to Gaussian Processes Discussion

Size: px
Start display at page:

Download "Student-t Process as Alternative to Gaussian Processes Discussion"

Transcription

1 Student-t Process as Alternative to Gaussian Processes Discussion A. Shah, A. G. Wilson and Z. Gharamani Discussion by: R. Henao Duke University June 20, 2014

2 Contributions The paper is concerned about the following aspects of Student-t processes: Definition and motivation of inverse Wishart processes (IWP). Propose a Student-t process (TP) derived from a hierarchical GP model. Show that predictive covariances of a TP depend on training observations. Show that TP is the most general elliptic symmetric process with analytic marginal and predictive distributions. Derive new sampling strategy for IWP. Show that an analytic TP noise model can separate signal from noise analytically. Empirically show non-trivial differences between GP and TP.

3 Inverse Wishart Distribution Definition (Dawid, 1981). Σ Π(n) has inverse Wishart distribution with parameters ν R +, K Π(n) and we write Σ IW n(ν,k) if its density is given by { p(σ) = c n(ν,k) K (ν+2n)/2 exp 1 } 2 trace(kσ 1 ), with Some properties: c n(ν,k) = When ν > 2, E[Σ] = (ν 2) 1 K. K (ν+n 1)/2 2 (ν+n 1)n/2 Γ n((ν +n 1)/2). Wishart and inverse Wishart distributions place prior mass on every Σ Π(n). Σ W n(ν,k) iff Σ 1 IW n(ν n+1,k 1 ). Dawid (1981) showed that the inverse Wishart distribution is closed under marginalization, so if Σ IW n(ν,k) then Σ 11 IW n1 (ν,k 11).

4 Inverse Wishart process Definition. σ is an inverse Wishart process on X with parameters ν R + and base kernel k θ : X X R if for any finite collection x 1,...,x n X: σ(x 1,...,x n) IW n(ν,k). K Π(n) with k ij = k θ (x i,x j). σ IWP(ν,k θ ). Generative model: where φ : X R. σ IWP(ν,k θ ), y σ GP(φ,(ν 2)σ) For data y = [y 1... y n] with φ = [φ(x 1)... φ(x n)] and Σ = σ(x 1,...,x n) p(y φ,ν,k) = p(y φ, Σ)p(Σ ν, K)dΣ ( 1+ 1 ) (ν+n)/2 ν 2 (y φ) K 1 (y φ)

5 Student-t process Definition. y R n has multivariate Student-t distribution with parameters ν R +\[0,2], φ R n and K Π(n) if it has density p(y) = ( Γ((ν +2)/2) (ν 2) n/2 π n/2 Γ(ν/2) K 1/ ) (ν+n)/2 ν 2 (y φ) K 1 (y φ). We write y MVT n(ν,φ,k). Some properties: E[y] = E[y Σ] = φ. cov[y] = E[(y φ)(y φ) Σ] = E[(ν 2)Σ] = K. Lemma. MVT is closed under marginalization. Definition. f is a Student-t process on X with parameters ν > 2, mean function φ : X R, and kernel function k θ : X X R, if any finite collection of function values [f(x 1)... f(x n)] MVT n(ν,φ,k), where K Π(n) with k ij = k θ (x i,x j) and φ R n with φ i = φ(x i). We write f T P(ν,φ,k θ ).

6 Relation to Gaussian process GP is a special case of TP. Lemma. Suppose that f T P(ν,φ,k θ ) and g GP(φ,k θ ), then f tends to g in distribution as ν. ν controls the tails of the distribution.

7 Conditional distribution Lemma. Suppose y MVT n(ν,φ,k) and let y = [y 1 y 2], with y 1 R n 1 and y 2 R n 2, then ( ) y 2 y 1 MVT n2 ν +n 1, φ ν +β1 2 2, ν +n 1 2 K 22, where φ2 = K 21K 1 11 (y1 φ1)+φ2. β 1 = (y 1 φ) K 1 11 (y1 φ). K22 = K 22 K 21K 1 11 K12. E[y 2 y 1] = φ 2. cov[y 2 y 1] = ν+β 1 2 ν+n 1 2 K 22. The predictive covariance of y 2 depends on y 1 via β 1.

8 Another covariance prior Yu et al., Scale mixture of Gaussians construction r 1 Gamma(ν/2,ρ/2), y r N(φ,r(ν 2)K/ρ), where K Π(n), φ R n, ν > 2, ρ > 0 and marginally y MVT n(ν,φ,k). Besides ( r 1 ν +n y Gamma, ρ ( )) 1+ β1, 2 2 ν 2 hence E[r(ν 2)/ρ y] = ν+β 1 2 ν+n 1 2.

9 Elliptical processes Definition. y R n is elliptically symmetric iff there exists µ R n, R a non-negative random variable, Ω a n d matrix with maximal rank d and u uniformly distributed on the unit sphere in R d independent of R such that y D = µ+rωu. Lemma (Fang et al., 1989). Suppose R 1 χ 2 (n) and R 2 Gamma 1 (ν/2,1/2) independently. If R = R 1, then y is Gaussian distributed. If R = (ν 2)R 1R 2, then y is MVT distributed. Definition Let Y = {y i} be a countable family of random variables. It is an elliptical process if any finite subset of them are jointly elliptically symmetric. Theorem (Kelker, 1970). Suppose Y = {y i} is an elliptical process. Any finite collection z = {z 1,...,z n} Y has a density iff there exists a non-negative random variable r such that z r N(µ,rΩΩ ). Corollary. Suppose Y = {y i} is an elliptical process. Any finite collection z = {z 1,...,z n} Y has an analytically representable density iff Y is a Gaussian process or a Student-t process.

10 A New Way to Sample the IWP Theorem. Let Σ Π(n). Suppose {λ 1,...,λ n} are the eigenvalues of Σ. There exists Q Ξ(n) such that Σ = QΛQ, where Λ = diag(λ 1,...,λ n). Using the facts that Q Q = I and AB = BA p(σ)dσ = p(qλq ) J(Σ;Q,Λ) dλdq n λ ν+2n 2 i e 2λ 1 i λ i λ j n dλ i dq, i=1 thus Q is uniformly distributed over Ξ(n) and the λ i are exchangeable. We draw Σ = QΛQ (Dawid, 1977): Q Υ n,n. Λ Θ n(ν). j i

11 Modeling Noisy Functions A common practice for GP is y = f +ǫ, f GP(φ,k θ ), ǫ N(0,ψI). This model is tractable because Gaussian distributions are closed under addition. MVT is not closed under addition but we write k = k θ +ψδ. Empirically MVT n(ν,0,k)+mvt n(ν,0,ψi) MVT n(ν,0,k+ψi).

12 Experiments Regression: Squared exponential kernel function plus delta. Sampling with Hamiltonian Monte Carlo for θ. 2 artificial and 3 benchmark datasets. Performance measure: MSE and log-likelihood. Bayesian optimization: ARD Matérn kernel function plus delta. Sampling with slice sampling for θ. 3 benchmark functions. Performance measure: minimum function vale vs. function evaluations.

arxiv: v2 [stat.ml] 19 Feb 2014

arxiv: v2 [stat.ml] 19 Feb 2014 Student-t Processes as Alternatives to Gaussian Processes Amar Shah Andrew Gordon Wilson Zoubin Ghahramani University of Cambridge University of Cambridge University of Cambridge arxiv:4.46v [stat.ml]

More information

Practical Bayesian Optimization of Machine Learning. Learning Algorithms

Practical Bayesian Optimization of Machine Learning. Learning Algorithms Practical Bayesian Optimization of Machine Learning Algorithms CS 294 University of California, Berkeley Tuesday, April 20, 2016 Motivation Machine Learning Algorithms (MLA s) have hyperparameters that

More information

Multivariate Normal & Wishart

Multivariate Normal & Wishart Multivariate Normal & Wishart Hoff Chapter 7 October 21, 2010 Reading Comprehesion Example Twenty-two children are given a reading comprehsion test before and after receiving a particular instruction method.

More information

GAUSSIAN PROCESS REGRESSION

GAUSSIAN PROCESS REGRESSION GAUSSIAN PROCESS REGRESSION CSE 515T Spring 2015 1. BACKGROUND The kernel trick again... The Kernel Trick Consider again the linear regression model: y(x) = φ(x) w + ε, with prior p(w) = N (w; 0, Σ). The

More information

Gaussian Processes. Le Song. Machine Learning II: Advanced Topics CSE 8803ML, Spring 2012

Gaussian Processes. Le Song. Machine Learning II: Advanced Topics CSE 8803ML, Spring 2012 Gaussian Processes Le Song Machine Learning II: Advanced Topics CSE 8803ML, Spring 01 Pictorial view of embedding distribution Transform the entire distribution to expected features Feature space Feature

More information

Hierarchical Modeling for Univariate Spatial Data

Hierarchical Modeling for Univariate Spatial Data Hierarchical Modeling for Univariate Spatial Data Geography 890, Hierarchical Bayesian Models for Environmental Spatial Data Analysis February 15, 2011 1 Spatial Domain 2 Geography 890 Spatial Domain This

More information

Nonparameteric Regression:

Nonparameteric Regression: Nonparameteric Regression: Nadaraya-Watson Kernel Regression & Gaussian Process Regression Seungjin Choi Department of Computer Science and Engineering Pohang University of Science and Technology 77 Cheongam-ro,

More information

Nonparametric Bayesian Methods (Gaussian Processes)

Nonparametric Bayesian Methods (Gaussian Processes) [70240413 Statistical Machine Learning, Spring, 2015] Nonparametric Bayesian Methods (Gaussian Processes) Jun Zhu dcszj@mail.tsinghua.edu.cn http://bigml.cs.tsinghua.edu.cn/~jun State Key Lab of Intelligent

More information

A Few Special Distributions and Their Properties

A Few Special Distributions and Their Properties A Few Special Distributions and Their Properties Econ 690 Purdue University Justin L. Tobias (Purdue) Distributional Catalog 1 / 20 Special Distributions and Their Associated Properties 1 Uniform Distribution

More information

Motivation Scale Mixutres of Normals Finite Gaussian Mixtures Skew-Normal Models. Mixture Models. Econ 690. Purdue University

Motivation Scale Mixutres of Normals Finite Gaussian Mixtures Skew-Normal Models. Mixture Models. Econ 690. Purdue University Econ 690 Purdue University In virtually all of the previous lectures, our models have made use of normality assumptions. From a computational point of view, the reason for this assumption is clear: combined

More information

Computer Vision Group Prof. Daniel Cremers. 2. Regression (cont.)

Computer Vision Group Prof. Daniel Cremers. 2. Regression (cont.) Prof. Daniel Cremers 2. Regression (cont.) Regression with MLE (Rep.) Assume that y is affected by Gaussian noise : t = f(x, w)+ where Thus, we have p(t x, w, )=N (t; f(x, w), 2 ) 2 Maximum A-Posteriori

More information

Gaussian Process Regression

Gaussian Process Regression Gaussian Process Regression 4F1 Pattern Recognition, 21 Carl Edward Rasmussen Department of Engineering, University of Cambridge November 11th - 16th, 21 Rasmussen (Engineering, Cambridge) Gaussian Process

More information

Hierarchical Modelling for Univariate Spatial Data

Hierarchical Modelling for Univariate Spatial Data Hierarchical Modelling for Univariate Spatial Data Sudipto Banerjee 1 and Andrew O. Finley 2 1 Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, U.S.A. 2 Department

More information

STA 4273H: Statistical Machine Learning

STA 4273H: Statistical Machine Learning STA 4273H: Statistical Machine Learning Russ Salakhutdinov Department of Computer Science! Department of Statistical Sciences! rsalakhu@cs.toronto.edu! h0p://www.cs.utoronto.ca/~rsalakhu/ Lecture 7 Approximate

More information

Pattern Recognition and Machine Learning. Bishop Chapter 2: Probability Distributions

Pattern Recognition and Machine Learning. Bishop Chapter 2: Probability Distributions Pattern Recognition and Machine Learning Chapter 2: Probability Distributions Cécile Amblard Alex Kläser Jakob Verbeek October 11, 27 Probability Distributions: General Density Estimation: given a finite

More information

Lecture 5: GPs and Streaming regression

Lecture 5: GPs and Streaming regression Lecture 5: GPs and Streaming regression Gaussian Processes Information gain Confidence intervals COMP-652 and ECSE-608, Lecture 5 - September 19, 2017 1 Recall: Non-parametric regression Input space X

More information

Review. DS GA 1002 Statistical and Mathematical Models. Carlos Fernandez-Granda

Review. DS GA 1002 Statistical and Mathematical Models.   Carlos Fernandez-Granda Review DS GA 1002 Statistical and Mathematical Models http://www.cims.nyu.edu/~cfgranda/pages/dsga1002_fall16 Carlos Fernandez-Granda Probability and statistics Probability: Framework for dealing with

More information

Gaussian Process Regression Networks

Gaussian Process Regression Networks Gaussian Process Regression Networks Andrew Gordon Wilson agw38@camacuk mlgengcamacuk/andrew University of Cambridge Joint work with David A Knowles and Zoubin Ghahramani June 27, 2012 ICML, Edinburgh

More information

Gaussian with mean ( µ ) and standard deviation ( σ)

Gaussian with mean ( µ ) and standard deviation ( σ) Slide from Pieter Abbeel Gaussian with mean ( µ ) and standard deviation ( σ) 10/6/16 CSE-571: Robotics X ~ N( µ, σ ) Y ~ N( aµ + b, a σ ) Y = ax + b + + + + 1 1 1 1 1 1 1 1 1 1, ~ ) ( ) ( ), ( ~ ), (

More information

Multiple Random Variables

Multiple Random Variables Multiple Random Variables This Version: July 30, 2015 Multiple Random Variables 2 Now we consider models with more than one r.v. These are called multivariate models For instance: height and weight An

More information

COMS 4721: Machine Learning for Data Science Lecture 10, 2/21/2017

COMS 4721: Machine Learning for Data Science Lecture 10, 2/21/2017 COMS 4721: Machine Learning for Data Science Lecture 10, 2/21/2017 Prof. John Paisley Department of Electrical Engineering & Data Science Institute Columbia University FEATURE EXPANSIONS FEATURE EXPANSIONS

More information

Scalable kernel methods and their use in black-box optimization

Scalable kernel methods and their use in black-box optimization with derivatives Scalable kernel methods and their use in black-box optimization David Eriksson Center for Applied Mathematics Cornell University dme65@cornell.edu November 9, 2018 1 2 3 4 1/37 with derivatives

More information

Probabilistic & Unsupervised Learning

Probabilistic & Unsupervised Learning Probabilistic & Unsupervised Learning Gaussian Processes Maneesh Sahani maneesh@gatsby.ucl.ac.uk Gatsby Computational Neuroscience Unit, and MSc ML/CSML, Dept Computer Science University College London

More information

Some Curiosities Arising in Objective Bayesian Analysis

Some Curiosities Arising in Objective Bayesian Analysis . Some Curiosities Arising in Objective Bayesian Analysis Jim Berger Duke University Statistical and Applied Mathematical Institute Yale University May 15, 2009 1 Three vignettes related to John s work

More information

STAT 518 Intro Student Presentation

STAT 518 Intro Student Presentation STAT 518 Intro Student Presentation Wen Wei Loh April 11, 2013 Title of paper Radford M. Neal [1999] Bayesian Statistics, 6: 475-501, 1999 What the paper is about Regression and Classification Flexible

More information

Introduction to Gaussian Processes

Introduction to Gaussian Processes Introduction to Gaussian Processes Iain Murray murray@cs.toronto.edu CSC255, Introduction to Machine Learning, Fall 28 Dept. Computer Science, University of Toronto The problem Learn scalar function of

More information

Introduction to Gaussian Processes

Introduction to Gaussian Processes Introduction to Gaussian Processes Neil D. Lawrence GPSS 10th June 2013 Book Rasmussen and Williams (2006) Outline The Gaussian Density Covariance from Basis Functions Basis Function Representations Constructing

More information

Advances and Applications in Perfect Sampling

Advances and Applications in Perfect Sampling and Applications in Perfect Sampling Ph.D. Dissertation Defense Ulrike Schneider advisor: Jem Corcoran May 8, 2003 Department of Applied Mathematics University of Colorado Outline Introduction (1) MCMC

More information

Multivariate Random Variable

Multivariate Random Variable Multivariate Random Variable Author: Author: Andrés Hincapié and Linyi Cao This Version: August 7, 2016 Multivariate Random Variable 3 Now we consider models with more than one r.v. These are called multivariate

More information

Random Eigenvalue Problems Revisited

Random Eigenvalue Problems Revisited Random Eigenvalue Problems Revisited S Adhikari Department of Aerospace Engineering, University of Bristol, Bristol, U.K. Email: S.Adhikari@bristol.ac.uk URL: http://www.aer.bris.ac.uk/contact/academic/adhikari/home.html

More information

STA 4273H: Sta-s-cal Machine Learning

STA 4273H: Sta-s-cal Machine Learning STA 4273H: Sta-s-cal Machine Learning Russ Salakhutdinov Department of Computer Science! Department of Statistical Sciences! rsalakhu@cs.toronto.edu! h0p://www.cs.utoronto.ca/~rsalakhu/ Lecture 2 In our

More information

Part 6: Multivariate Normal and Linear Models

Part 6: Multivariate Normal and Linear Models Part 6: Multivariate Normal and Linear Models 1 Multiple measurements Up until now all of our statistical models have been univariate models models for a single measurement on each member of a sample of

More information

Advanced Introduction to Machine Learning CMU-10715

Advanced Introduction to Machine Learning CMU-10715 Advanced Introduction to Machine Learning CMU-10715 Gaussian Processes Barnabás Póczos http://www.gaussianprocess.org/ 2 Some of these slides in the intro are taken from D. Lizotte, R. Parr, C. Guesterin

More information

Bayesian Gaussian / Linear Models. Read Sections and 3.3 in the text by Bishop

Bayesian Gaussian / Linear Models. Read Sections and 3.3 in the text by Bishop Bayesian Gaussian / Linear Models Read Sections 2.3.3 and 3.3 in the text by Bishop Multivariate Gaussian Model with Multivariate Gaussian Prior Suppose we model the observed vector b as having a multivariate

More information

Variational Principal Components

Variational Principal Components Variational Principal Components Christopher M. Bishop Microsoft Research 7 J. J. Thomson Avenue, Cambridge, CB3 0FB, U.K. cmbishop@microsoft.com http://research.microsoft.com/ cmbishop In Proceedings

More information

Computer Vision Group Prof. Daniel Cremers. 9. Gaussian Processes - Regression

Computer Vision Group Prof. Daniel Cremers. 9. Gaussian Processes - Regression Group Prof. Daniel Cremers 9. Gaussian Processes - Regression Repetition: Regularized Regression Before, we solved for w using the pseudoinverse. But: we can kernelize this problem as well! First step:

More information

PREDICTING SOLAR GENERATION FROM WEATHER FORECASTS. Chenlin Wu Yuhan Lou

PREDICTING SOLAR GENERATION FROM WEATHER FORECASTS. Chenlin Wu Yuhan Lou PREDICTING SOLAR GENERATION FROM WEATHER FORECASTS Chenlin Wu Yuhan Lou Background Smart grid: increasing the contribution of renewable in grid energy Solar generation: intermittent and nondispatchable

More information

Multiple-step Time Series Forecasting with Sparse Gaussian Processes

Multiple-step Time Series Forecasting with Sparse Gaussian Processes Multiple-step Time Series Forecasting with Sparse Gaussian Processes Perry Groot ab Peter Lucas a Paul van den Bosch b a Radboud University, Model-Based Systems Development, Heyendaalseweg 135, 6525 AJ

More information

1 Data Arrays and Decompositions

1 Data Arrays and Decompositions 1 Data Arrays and Decompositions 1.1 Variance Matrices and Eigenstructure Consider a p p positive definite and symmetric matrix V - a model parameter or a sample variance matrix. The eigenstructure is

More information

STA414/2104 Statistical Methods for Machine Learning II

STA414/2104 Statistical Methods for Machine Learning II STA414/2104 Statistical Methods for Machine Learning II Murat A. Erdogdu & David Duvenaud Department of Computer Science Department of Statistical Sciences Lecture 3 Slide credits: Russ Salakhutdinov Announcements

More information

Spatial smoothing using Gaussian processes

Spatial smoothing using Gaussian processes Spatial smoothing using Gaussian processes Chris Paciorek paciorek@hsph.harvard.edu August 5, 2004 1 OUTLINE Spatial smoothing and Gaussian processes Covariance modelling Nonstationary covariance modelling

More information

Econ 2148, fall 2017 Gaussian process priors, reproducing kernel Hilbert spaces, and Splines

Econ 2148, fall 2017 Gaussian process priors, reproducing kernel Hilbert spaces, and Splines Econ 2148, fall 2017 Gaussian process priors, reproducing kernel Hilbert spaces, and Splines Maximilian Kasy Department of Economics, Harvard University 1 / 37 Agenda 6 equivalent representations of the

More information

Gibbs Sampling in Linear Models #2

Gibbs Sampling in Linear Models #2 Gibbs Sampling in Linear Models #2 Econ 690 Purdue University Outline 1 Linear Regression Model with a Changepoint Example with Temperature Data 2 The Seemingly Unrelated Regressions Model 3 Gibbs sampling

More information

A Bayesian Treatment of Linear Gaussian Regression

A Bayesian Treatment of Linear Gaussian Regression A Bayesian Treatment of Linear Gaussian Regression Frank Wood December 3, 2009 Bayesian Approach to Classical Linear Regression In classical linear regression we have the following model y β, σ 2, X N(Xβ,

More information

MFM Practitioner Module: Quantitative Risk Management. John Dodson. September 23, 2015

MFM Practitioner Module: Quantitative Risk Management. John Dodson. September 23, 2015 MFM Practitioner Module: Quantitative Risk Management September 23, 2015 Mixtures Mixtures Mixtures Definitions For our purposes, A random variable is a quantity whose value is not known to us right now

More information

Multivariate Distributions

Multivariate Distributions IEOR E4602: Quantitative Risk Management Spring 2016 c 2016 by Martin Haugh Multivariate Distributions We will study multivariate distributions in these notes, focusing 1 in particular on multivariate

More information

GWAS V: Gaussian processes

GWAS V: Gaussian processes GWAS V: Gaussian processes Dr. Oliver Stegle Christoh Lippert Prof. Dr. Karsten Borgwardt Max-Planck-Institutes Tübingen, Germany Tübingen Summer 2011 Oliver Stegle GWAS V: Gaussian processes Summer 2011

More information

Multivariate Statistics

Multivariate Statistics Multivariate Statistics Chapter 2: Multivariate distributions and inference Pedro Galeano Departamento de Estadística Universidad Carlos III de Madrid pedro.galeano@uc3m.es Course 2016/2017 Master in Mathematical

More information

Gaussian Processes (10/16/13)

Gaussian Processes (10/16/13) STA561: Probabilistic machine learning Gaussian Processes (10/16/13) Lecturer: Barbara Engelhardt Scribes: Changwei Hu, Di Jin, Mengdi Wang 1 Introduction In supervised learning, we observe some inputs

More information

The exam is closed book, closed notes except your one-page (two sides) or two-page (one side) crib sheet.

The exam is closed book, closed notes except your one-page (two sides) or two-page (one side) crib sheet. CS 189 Spring 013 Introduction to Machine Learning Final You have 3 hours for the exam. The exam is closed book, closed notes except your one-page (two sides) or two-page (one side) crib sheet. Please

More information

CPSC 540: Machine Learning

CPSC 540: Machine Learning CPSC 540: Machine Learning MCMC and Non-Parametric Bayes Mark Schmidt University of British Columbia Winter 2016 Admin I went through project proposals: Some of you got a message on Piazza. No news is

More information

Reliability Monitoring Using Log Gaussian Process Regression

Reliability Monitoring Using Log Gaussian Process Regression COPYRIGHT 013, M. Modarres Reliability Monitoring Using Log Gaussian Process Regression Martin Wayne Mohammad Modarres PSA 013 Center for Risk and Reliability University of Maryland Department of Mechanical

More information

Likelihood NIPS July 30, Gaussian Process Regression with Student-t. Likelihood. Jarno Vanhatalo, Pasi Jylanki and Aki Vehtari NIPS-2009

Likelihood NIPS July 30, Gaussian Process Regression with Student-t. Likelihood. Jarno Vanhatalo, Pasi Jylanki and Aki Vehtari NIPS-2009 with with July 30, 2010 with 1 2 3 Representation Representation for Distribution Inference for the Augmented Model 4 Approximate Laplacian Approximation Introduction to Laplacian Approximation Laplacian

More information

Pattern Recognition and Machine Learning. Bishop Chapter 6: Kernel Methods

Pattern Recognition and Machine Learning. Bishop Chapter 6: Kernel Methods Pattern Recognition and Machine Learning Chapter 6: Kernel Methods Vasil Khalidov Alex Kläser December 13, 2007 Training Data: Keep or Discard? Parametric methods (linear/nonlinear) so far: learn parameter

More information

Stein Variational Gradient Descent: A General Purpose Bayesian Inference Algorithm

Stein Variational Gradient Descent: A General Purpose Bayesian Inference Algorithm Stein Variational Gradient Descent: A General Purpose Bayesian Inference Algorithm Qiang Liu and Dilin Wang NIPS 2016 Discussion by Yunchen Pu March 17, 2017 March 17, 2017 1 / 8 Introduction Let x R d

More information

Lecture: Gaussian Process Regression. STAT 6474 Instructor: Hongxiao Zhu

Lecture: Gaussian Process Regression. STAT 6474 Instructor: Hongxiao Zhu Lecture: Gaussian Process Regression STAT 6474 Instructor: Hongxiao Zhu Motivation Reference: Marc Deisenroth s tutorial on Robot Learning. 2 Fast Learning for Autonomous Robots with Gaussian Processes

More information

Hilbert Space Methods for Reduced-Rank Gaussian Process Regression

Hilbert Space Methods for Reduced-Rank Gaussian Process Regression Hilbert Space Methods for Reduced-Rank Gaussian Process Regression Arno Solin and Simo Särkkä Aalto University, Finland Workshop on Gaussian Process Approximation Copenhagen, Denmark, May 2015 Solin &

More information

Hierarchical Modelling for Univariate Spatial Data

Hierarchical Modelling for Univariate Spatial Data Spatial omain Hierarchical Modelling for Univariate Spatial ata Sudipto Banerjee 1 and Andrew O. Finley 2 1 Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, U.S.A.

More information

Spatial Statistics with Image Analysis. Lecture L02. Computer exercise 0 Daily Temperature. Lecture 2. Johan Lindström.

Spatial Statistics with Image Analysis. Lecture L02. Computer exercise 0 Daily Temperature. Lecture 2. Johan Lindström. C Stochastic fields Covariance Spatial Statistics with Image Analysis Lecture 2 Johan Lindström November 4, 26 Lecture L2 Johan Lindström - johanl@maths.lth.se FMSN2/MASM2 L /2 C Stochastic fields Covariance

More information

Linear regression example Simple linear regression: f(x) = ϕ(x)t w w ~ N(0, ) The mean and covariance are given by E[f(x)] = ϕ(x)e[w] = 0.

Linear regression example Simple linear regression: f(x) = ϕ(x)t w w ~ N(0, ) The mean and covariance are given by E[f(x)] = ϕ(x)e[w] = 0. Gaussian Processes Gaussian Process Stochastic process: basically, a set of random variables. may be infinite. usually related in some way. Gaussian process: each variable has a Gaussian distribution every

More information

Lecture 3. Probability - Part 2. Luigi Freda. ALCOR Lab DIAG University of Rome La Sapienza. October 19, 2016

Lecture 3. Probability - Part 2. Luigi Freda. ALCOR Lab DIAG University of Rome La Sapienza. October 19, 2016 Lecture 3 Probability - Part 2 Luigi Freda ALCOR Lab DIAG University of Rome La Sapienza October 19, 2016 Luigi Freda ( La Sapienza University) Lecture 3 October 19, 2016 1 / 46 Outline 1 Common Continuous

More information

Bayesian Regression Linear and Logistic Regression

Bayesian Regression Linear and Logistic Regression When we want more than point estimates Bayesian Regression Linear and Logistic Regression Nicole Beckage Ordinary Least Squares Regression and Lasso Regression return only point estimates But what if we

More information

The joint posterior distribution of the unknown parameters and hidden variables, given the

The joint posterior distribution of the unknown parameters and hidden variables, given the DERIVATIONS OF THE FULLY CONDITIONAL POSTERIOR DENSITIES The joint posterior distribution of the unknown parameters and hidden variables, given the data, is proportional to the product of the joint prior

More information

Computer Emulation With Density Estimation

Computer Emulation With Density Estimation Computer Emulation With Density Estimation Jake Coleman, Robert Wolpert May 8, 2017 Jake Coleman, Robert Wolpert Emulation and Density Estimation May 8, 2017 1 / 17 Computer Emulation Motivation Expensive

More information

CSci 8980: Advanced Topics in Graphical Models Gaussian Processes

CSci 8980: Advanced Topics in Graphical Models Gaussian Processes CSci 8980: Advanced Topics in Graphical Models Gaussian Processes Instructor: Arindam Banerjee November 15, 2007 Gaussian Processes Outline Gaussian Processes Outline Parametric Bayesian Regression Gaussian

More information

A Review of Pseudo-Marginal Markov Chain Monte Carlo

A Review of Pseudo-Marginal Markov Chain Monte Carlo A Review of Pseudo-Marginal Markov Chain Monte Carlo Discussed by: Yizhe Zhang October 21, 2016 Outline 1 Overview 2 Paper review 3 experiment 4 conclusion Motivation & overview Notation: θ denotes the

More information

Dependence. Practitioner Course: Portfolio Optimization. John Dodson. September 10, Dependence. John Dodson. Outline.

Dependence. Practitioner Course: Portfolio Optimization. John Dodson. September 10, Dependence. John Dodson. Outline. Practitioner Course: Portfolio Optimization September 10, 2008 Before we define dependence, it is useful to define Random variables X and Y are independent iff For all x, y. In particular, F (X,Y ) (x,

More information

ST 740: Linear Models and Multivariate Normal Inference

ST 740: Linear Models and Multivariate Normal Inference ST 740: Linear Models and Multivariate Normal Inference Alyson Wilson Department of Statistics North Carolina State University November 4, 2013 A. Wilson (NCSU STAT) Linear Models November 4, 2013 1 /

More information

1 Exercises for lecture 1

1 Exercises for lecture 1 1 Exercises for lecture 1 Exercise 1 a) Show that if F is symmetric with respect to µ, and E( X )

More information

COMP 551 Applied Machine Learning Lecture 20: Gaussian processes

COMP 551 Applied Machine Learning Lecture 20: Gaussian processes COMP 55 Applied Machine Learning Lecture 2: Gaussian processes Instructor: Ryan Lowe (ryan.lowe@cs.mcgill.ca) Slides mostly by: (herke.vanhoof@mcgill.ca) Class web page: www.cs.mcgill.ca/~hvanho2/comp55

More information

Probabilistic Graphical Models Lecture 20: Gaussian Processes

Probabilistic Graphical Models Lecture 20: Gaussian Processes Probabilistic Graphical Models Lecture 20: Gaussian Processes Andrew Gordon Wilson www.cs.cmu.edu/~andrewgw Carnegie Mellon University March 30, 2015 1 / 53 What is Machine Learning? Machine learning algorithms

More information

A Process over all Stationary Covariance Kernels

A Process over all Stationary Covariance Kernels A Process over all Stationary Covariance Kernels Andrew Gordon Wilson June 9, 0 Abstract I define a process over all stationary covariance kernels. I show how one might be able to perform inference that

More information

Expectation Propagation for Approximate Bayesian Inference

Expectation Propagation for Approximate Bayesian Inference Expectation Propagation for Approximate Bayesian Inference José Miguel Hernández Lobato Universidad Autónoma de Madrid, Computer Science Department February 5, 2007 1/ 24 Bayesian Inference Inference Given

More information

Random Matrix Eigenvalue Problems in Probabilistic Structural Mechanics

Random Matrix Eigenvalue Problems in Probabilistic Structural Mechanics Random Matrix Eigenvalue Problems in Probabilistic Structural Mechanics S Adhikari Department of Aerospace Engineering, University of Bristol, Bristol, U.K. URL: http://www.aer.bris.ac.uk/contact/academic/adhikari/home.html

More information

Gaussian processes. Chuong B. Do (updated by Honglak Lee) November 22, 2008

Gaussian processes. Chuong B. Do (updated by Honglak Lee) November 22, 2008 Gaussian processes Chuong B Do (updated by Honglak Lee) November 22, 2008 Many of the classical machine learning algorithms that we talked about during the first half of this course fit the following pattern:

More information

The Bayesian approach to inverse problems

The Bayesian approach to inverse problems The Bayesian approach to inverse problems Youssef Marzouk Department of Aeronautics and Astronautics Center for Computational Engineering Massachusetts Institute of Technology ymarz@mit.edu, http://uqgroup.mit.edu

More information

STAT Advanced Bayesian Inference

STAT Advanced Bayesian Inference 1 / 32 STAT 625 - Advanced Bayesian Inference Meng Li Department of Statistics Jan 23, 218 The Dirichlet distribution 2 / 32 θ Dirichlet(a 1,...,a k ) with density p(θ 1,θ 2,...,θ k ) = k j=1 Γ(a j) Γ(

More information

Outline Lecture 2 2(32)

Outline Lecture 2 2(32) Outline Lecture (3), Lecture Linear Regression and Classification it is our firm belief that an understanding of linear models is essential for understanding nonlinear ones Thomas Schön Division of Automatic

More information

Efficient Bayesian Multivariate Surface Regression

Efficient Bayesian Multivariate Surface Regression Efficient Bayesian Multivariate Surface Regression Feng Li feng.li@cufe.edu.cn School of Statistics and Mathematics Central University of Finance and Economics Outline of the talk 1 Introduction to flexible

More information

Notes on Random Vectors and Multivariate Normal

Notes on Random Vectors and Multivariate Normal MATH 590 Spring 06 Notes on Random Vectors and Multivariate Normal Properties of Random Vectors If X,, X n are random variables, then X = X,, X n ) is a random vector, with the cumulative distribution

More information

Learning Gaussian Process Models from Uncertain Data

Learning Gaussian Process Models from Uncertain Data Learning Gaussian Process Models from Uncertain Data Patrick Dallaire, Camille Besse, and Brahim Chaib-draa DAMAS Laboratory, Computer Science & Software Engineering Department, Laval University, Canada

More information

An Introduction to Bayesian Linear Regression

An Introduction to Bayesian Linear Regression An Introduction to Bayesian Linear Regression APPM 5720: Bayesian Computation Fall 2018 A SIMPLE LINEAR MODEL Suppose that we observe explanatory variables x 1, x 2,..., x n and dependent variables y 1,

More information

Introduction to Gaussian Processes

Introduction to Gaussian Processes Introduction to Gaussian Processes Iain Murray School of Informatics, University of Edinburgh The problem Learn scalar function of vector values f(x).5.5 f(x) y i.5.2.4.6.8 x f 5 5.5 x x 2.5 We have (possibly

More information

Kernel adaptive Sequential Monte Carlo

Kernel adaptive Sequential Monte Carlo Kernel adaptive Sequential Monte Carlo Ingmar Schuster (Paris Dauphine) Heiko Strathmann (University College London) Brooks Paige (Oxford) Dino Sejdinovic (Oxford) December 7, 2015 1 / 36 Section 1 Outline

More information

Extreme Value Analysis and Spatial Extremes

Extreme Value Analysis and Spatial Extremes Extreme Value Analysis and Department of Statistics Purdue University 11/07/2013 Outline Motivation 1 Motivation 2 Extreme Value Theorem and 3 Bayesian Hierarchical Models Copula Models Max-stable Models

More information

Gaussian processes for spatial modelling in environmental health: parameterizing for flexibility vs. computational efficiency

Gaussian processes for spatial modelling in environmental health: parameterizing for flexibility vs. computational efficiency Gaussian processes for spatial modelling in environmental health: parameterizing for flexibility vs. computational efficiency Chris Paciorek March 11, 2005 Department of Biostatistics Harvard School of

More information

CPSC 540: Machine Learning

CPSC 540: Machine Learning CPSC 540: Machine Learning Undirected Graphical Models Mark Schmidt University of British Columbia Winter 2016 Admin Assignment 3: 2 late days to hand it in today, Thursday is final day. Assignment 4:

More information

Gaussian Processes in Machine Learning

Gaussian Processes in Machine Learning Gaussian Processes in Machine Learning November 17, 2011 CharmGil Hong Agenda Motivation GP : How does it make sense? Prior : Defining a GP More about Mean and Covariance Functions Posterior : Conditioning

More information

On an Additive Semigraphoid Model for Statistical Networks With Application to Nov Pathway 25, 2016 Analysis -1 Bing / 38Li,

On an Additive Semigraphoid Model for Statistical Networks With Application to Nov Pathway 25, 2016 Analysis -1 Bing / 38Li, On an Additive Semigraphoid Model for Statistical Networks With Application to Pathway Analysis - Bing Li, Hyunho Chun & Hongyu Zhao Kim Youngrae SNU Stat. Multivariate Lab Nov 25, 2016 On an Additive

More information

Nonparametric Regression With Gaussian Processes

Nonparametric Regression With Gaussian Processes Nonparametric Regression With Gaussian Processes From Chap. 45, Information Theory, Inference and Learning Algorithms, D. J. C. McKay Presented by Micha Elsner Nonparametric Regression With Gaussian Processes

More information

Automatic Relevance Determination

Automatic Relevance Determination Automatic Relevance Determination Elia Liitiäinen (eliitiai@cc.hut.fi) Time Series Prediction Group Adaptive Informatics Research Centre Helsinki University of Technology, Finland October 24, 2006 Introduction

More information

Restricted Maximum Likelihood in Linear Regression and Linear Mixed-Effects Model

Restricted Maximum Likelihood in Linear Regression and Linear Mixed-Effects Model Restricted Maximum Likelihood in Linear Regression and Linear Mixed-Effects Model Xiuming Zhang zhangxiuming@u.nus.edu A*STAR-NUS Clinical Imaging Research Center October, 015 Summary This report derives

More information

Log Gaussian Cox Processes. Chi Group Meeting February 23, 2016

Log Gaussian Cox Processes. Chi Group Meeting February 23, 2016 Log Gaussian Cox Processes Chi Group Meeting February 23, 2016 Outline Typical motivating application Introduction to LGCP model Brief overview of inference Applications in my work just getting started

More information

Lecture : Probabilistic Machine Learning

Lecture : Probabilistic Machine Learning Lecture : Probabilistic Machine Learning Riashat Islam Reasoning and Learning Lab McGill University September 11, 2018 ML : Many Methods with Many Links Modelling Views of Machine Learning Machine Learning

More information

Introduction to Bayesian Inference

Introduction to Bayesian Inference University of Pennsylvania EABCN Training School May 10, 2016 Bayesian Inference Ingredients of Bayesian Analysis: Likelihood function p(y φ) Prior density p(φ) Marginal data density p(y ) = p(y φ)p(φ)dφ

More information

Kazuhiko Kakamu Department of Economics Finance, Institute for Advanced Studies. Abstract

Kazuhiko Kakamu Department of Economics Finance, Institute for Advanced Studies. Abstract Bayesian Estimation of A Distance Functional Weight Matrix Model Kazuhiko Kakamu Department of Economics Finance, Institute for Advanced Studies Abstract This paper considers the distance functional weight

More information

Stat260: Bayesian Modeling and Inference Lecture Date: February 10th, Jeffreys priors. exp 1 ) p 2

Stat260: Bayesian Modeling and Inference Lecture Date: February 10th, Jeffreys priors. exp 1 ) p 2 Stat260: Bayesian Modeling and Inference Lecture Date: February 10th, 2010 Jeffreys priors Lecturer: Michael I. Jordan Scribe: Timothy Hunter 1 Priors for the multivariate Gaussian Consider a multivariate

More information

Bayesian Learning. HT2015: SC4 Statistical Data Mining and Machine Learning. Maximum Likelihood Principle. The Bayesian Learning Framework

Bayesian Learning. HT2015: SC4 Statistical Data Mining and Machine Learning. Maximum Likelihood Principle. The Bayesian Learning Framework HT5: SC4 Statistical Data Mining and Machine Learning Dino Sejdinovic Department of Statistics Oxford http://www.stats.ox.ac.uk/~sejdinov/sdmml.html Maximum Likelihood Principle A generative model for

More information