Received 13 September 2005/Returned for modification 7 November 2005/Accepted 8 May 2006

Size: px
Start display at page:

Download "Received 13 September 2005/Returned for modification 7 November 2005/Accepted 8 May 2006"

Transcription

1 JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2006, p Vol. 44, No /06/$ doi: /jcm Copyright 2006, American Society for Microbiology. All Rights Reserved. Clonality and Antimicrobial Resistance Gene Profiles of Multidrug- Resistant Salmonella enterica Serovar Infantis Isolates from Four Public Hospitals in Rio de Janeiro, Brazil E. L. Fonseca, 1 O. L. Mykytczuk, 4,5 M. D. Asensi, 1 E. M. F. Reis, 1 L. R. Ferraz, 2 F. L. Paula, 3 L. K. Ng, 4,5 and D. P. Rodrigues 1 * Bacteriology Department, Oswaldo Cruz Institute FIOCRUZ, Rio de Janeiro, Brazil 1 ; Public Health Laboratory, Brasilia, Brazil 2 ; Evandro Chagas Institute, Para, Brazil 3 ; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada 4 ; and Department of Medical Microbiology, Faculty of Medicine, University of Manitoba, Winnipeg, Manitoba, Canada 5 Received 13 September 2005/Returned for modification 7 November 2005/Accepted 8 May 2006 In Brazil, Salmonella enterica serovar Infantis resistant to various antimicrobials, including cephalosporins, has been identified as an etiological agent of severe gastroenteritis in hospitalized children since In this study, 35 serovar Infantis strains, isolated from children admitted to four different Rio de Janeiro, Brazil, hospitals between 1996 and 2001, were characterized by pulsed-field gel electrophoresis (PFGE) and antimicrobial susceptibility testing in order to determine their genetic relatedness and antimicrobial resistance profiles. Thirty-four serovar Infantis strains were resistant to at least two antibiotic classes, and all 35 strains were susceptible to fluoroquinolones, cephamycin, and carbapenem. Extended-spectrum beta-lactamase (ESBL) screening by double-disk diffusion indicated that 32 serovar Infantis strains (91.4%) produced betalactamases that were inhibited by clavulanic acid. Antimicrobial resistance gene profiles were determined by PCR for a subset of 11 multidrug-resistant serovar Infantis strains, and putative ESBLs were detected by isoelectric focusing. Ten serovar Infantis strains carried bla TEM, cati, ant(3 )Ia and/or ant(3 )Ib, suli and/or sulii, and tet(d) genes as well as an integron-associated aac(6 )-Iq cassette. Eight strains possessed at least four different beta-lactamases with pi profiles that confirmed the presence of both ESBLs and non-esbls. Our PFGE profiles indicated that 33 serovar Infantis strains isolated from Rio de Janeiro hospitals came from the same genetic lineage. For many years, ampicillin, sulfamethoxazole-trimethoprim, and chloramphenicol were the drugs of choice for the treatment of severe Salmonella infections, but increasing rates of resistance to these agents have significantly reduced their efficacies (28, 35). Subsequently, third-generation cephalosporins, due to their pharmacodynamic properties as well as low resistance levels in Salmonella, are being used to treat invasive salmonellosis (5, 11). In 1994, Asensi and Hofer reported the presence in Rio de Janeiro, Brazil, of Salmonella enterica serovar Infantis strains that were resistant to a growing number of antimicrobial agents (6). Two years later, a nosocomial outbreak in a neonatal unit of one hospital (designated HC) was reported by De Moraes et al. (13). The authors detected multidrug-resistant serovar Infantis phenotypes, including resistance to broadspectrum cephalosporins that was transferred by a plasmid of 148 kbp. An investigation carried out from 1998 to 1999 reported an infection due to extended-spectrum beta-lactamase (ESBL)-producing serovar Infantis in the neonatal unit of a public hospital (HC) in Rio de Janeiro, Brazil, indicating inadequate infection control practices and nursery overcrowding (30). Since then, multidrug-resistant serovar Infantis has been isolated in three other public health hospitals (designated HA, HB, and HD) of Rio de Janeiro, Brazil. Two are pediatric reference hospitals that often see children from the western and northern regions of the city, where parts of the population have lower socioeconomic and sanitary conditions. Some children were human immunodeficiency virus positive, and most suffered from recurring infections and had histories of rehospitalization. Although HC is a university-affiliated hospital and HD is a reference hospital for cancer, both provide medical care for patients with debilitating diseases such as AIDS and diabetes. In addition, these patients are subjected to prolonged hospitalizations that are often accompanied by the empirical use and sometimes overuse of antimicrobial drugs (ampicillin and/or cephalosporins and/or aminoglycosides). This led us to monitor the prevalence and antimicrobial susceptibility of serovar Infantis in hospitals in Rio de Janeiro, Brazil. The aims of this research were to (i) determine the antimicrobial susceptibility patterns, (ii) identify the main mechanisms involved in antimicrobial resistance, (iii) ascertain the presence and spread of integron-carried resistance genes, and finally, (iv) assess the macro-restriction fragment length polymorphisms between multidrug-resistant serovar Infantis strains from those hospitals. * Corresponding author. Mailing address: Laboratório de Enterobactérias, Departamento de Bacteriologia, Oswaldo Cruz Institute FIOCRUZ, Avenida Brasil, 4365 Pavilhão Rocha Lima, 3 andar, Manguinhos Rio de Janeiro, Brasil Phone: Fax: dalia@ioc.fiocruz.br. MATERIALS AND METHODS Bacterial strains. Serovar Infantis strains were isolated according to the method of Costa and Hofer (12), and the antigenic characterization was based on the Kauffmann-White scheme described by Poppof (29a). This study included

2 2768 FONSECA ET AL. J. CLIN. MICROBIOL. TABLE 1. PCR primers used to identify antimicrobial resistance genes and integrons in serovar Infantis Gene or integron Primer sequence 5 to 3 a Reference strain b (plasmid) Source (reference) teta tetb tetc tetd tete tetg teth cati catii catiii suli sulii DhfrI aada1 aada2 aph3 Ia aac6 Iq bla TEM-1 Integron 5 CS/ 3 CS F, GCT ACA TCC TGC TTG CCT TC; R, CAT AGA TCG CCG TGA AGA GG F, TTG GTT AGG GGC AAG TTT TG; R, GTA ATG GGC CAA TAA CAC CG F, CTT GAG AGC CTT CAA CCC AG; R, ATG GTC GTC ATC TAC CTG CC F, AAA CCA TTA CGG CAT TCT GC; R, GAC CGG ATA CAC CAT CCA TC F, AAA CCA CAT CCT CCA TAC GC; R, AAA TAG GCC ACA ACC GTC AG F, CAG CTT TCG GAT TCT TAC GG; R, GAT TGG TGA GGC TCG TTA GC F, CCT GAA AAC CAA ACT GCC TC; R, ACA GAC CAT CCC AAT AAG CG F, TCA GCT GGA TAT TAC GGC CT; R, CAT TCT GCC GAC ATG GAA G F, ATT CAG CCT GAC CAC CAA AC; R, CTT CCT GCT GAA ACT TTG CC F, CCC ACA ATT CAC CGT ATT CC; R, GAA CCT GTA CTG AGA GCG GC F, CAC CGC GGC GAT CGA AAT GC; R, GGT TTC CGA GAA GGT GAT F, ATC GCT CAT CAT TTT CGG CA; R, CTC GTG TGT GCG CAT GAA GT F, CGA AGA ATG GAG TTA TCG GG; R, TAA ACA TCA CCT TCC GGC TC F, GCG CTA AAT GAA ACC TTA AC; R, TCG CCT TTC ACG TAG TGG AC F, TGT TGG TTA CTG TGG CCG TA; R, GCT GCG AGT TCC ATA GCT TC F, TTA TGC CTC TTC CGA CCA TC; R, GAG AAA ACT CAC CGA GGC AG F, GCT GGA AAT GAA TCA TGG GT; R, TAA TTC CCC TAC CCT TCG CT F, ATA AAA TTC TTG AAG ACG AAA; R, GAC AGT TAC CAA TGC TTA ATC A F, GGC ATC CAA GCA GCA AG; R, AAG CAG ACT TGA CCT GA E. coli D20-15 (psl18) S. Levy (21) E. coli D20-16 (prt11) S. Levy (20) E. coli D20-6 (pbr322) S. Levy (20) E. coli D22-2 (psl106) S. Levy (20) E. coli D22-14 (psl1504) S. Levy (19) E. coli HB101 (pja8122) T. Aoki (37) Pasteurella multocida (pvm112) M. Roberts (15) LK 169 (pbr329) 2 E. coli J52 (psa) M. Roberts (25) E. coli J53 (R387) M. Roberts (24) 820 Proteus mirabilis P. H. Roy (18) Serovar Typhimurium CO-8861 C. Clark (31) C600 (R483) 32 E. coli JE 2571 (phh1457) D. Taylor (9) Serovar Typhimurium PT D. Taylor (7) E. coli JE 2571 (phh1457) D. Taylor (9) BR-SA D. Rodrigues (23) Neisseria gonorrhoeae Serovar Typhimurium PT D. Taylor (18) a F, forward primer; R, reverse primer. b The reference strain served as a positive control for PCRs. serovar Infantis strains isolated from the stools or blood of children under 7 months who were admitted to four public hospitals (HA, HB, HC, and HD) in Rio de Janeiro, Brazil, from 1996 to Only one isolate per patient was included in the study. Antimicrobial susceptibility testing and extended-spectrum beta-lactamase assay. Disk diffusion tests were performed according to Clinical and Laboratory Standards Institute (formerly National Committee for Clinical Laboratory Standards) (26) recommendations by using disks (Oxoid Limited, Hampshire, England) impregnated with ampicillin (AMP; 10 g), aztreonam (ATM; 30 g), cephalothin (CEF; 30 g), cefotaxime (CTX; 30 g), ceftriaxone (CRO; 30 g), ceftazidime (CAZ; 30 g), cefoxitin (FOX; 30 g), cefuroxime (CXM; 30 g), cefepime (FEP; 30 g), ciprofloxacin (CIP; 5 g), chloramphenicol (CHL; 30 g), streptomycin (STR; 10 g), kanamycin (KAN; 10 g), gentamicin (GEN; 10 g), imipenem (IPM; 10 g), nalidixic acid (NAL; 30 g), trimethoprim-sulfamethoxazole (SXT; 25 g), and tetracycline (TET; 30 g). For quality control of the culture media and antimicrobial disks, Escherichia coli ATCC 25922, E. coli ATCC 35218, Pseudomonas aeruginosa ATCC 27853, Enterococcus faecalis ATCC 29212, and Staphylococcus aureus ATCC were tested under the same conditions and antimicrobials as was suggested by the CLSI (26). The method described by the CLSI for other Enterobacteriaceae was used to perform double-disk diffusion for the screening of ESBL-producing strains. Double-disk diffusion was performed with cephalosporin and cephalosporin/clavulanic acid combination disks (Oxoid Limited, England). Klebsiella pneumoniae ATCC (positive) and E. coli ATCC (negative) were used as control strains. In addition, the production of ESBLs in 11 serovar Infantis strains was confirmed at the National Microbiology Laboratory, Public Health Agency of Canada, by using the Mast Diagnostics ESBL detection kit (Merseyside, United Kingdom) according to the manufacturer s instructions. Preparation of crude protein extracts and IEF. The 11 ESBL-positive isolates were grown in 2 ml of Mueller-Hinton broth at 37 C overnight, and cells were harvested by centrifugation at 16,000 g for 2 min. After discarding the supernatant, cells were resuspended in 250 l of 1% glycine and 30% glycerol and were sonicated twice for 30 s, with cooling of the cells on ice between sonications. Cell lysates were centrifuged at 16,000 g for 15 min. Supernatants were collected into clean tubes and stored at 20 C. Prior to isoelectric focusing (IEF), cell extracts were tested for beta-lactamase activity by adding 50 l of50 g/ml nitrocefin stock solution (Oxoid Limited, England) to 17 l of extract and then recording the time required for the reaction to turn dark pink. The optimal reaction time was 30 to 120 s. For reaction times of 5sorless, the extract was diluted with phosphate buffer and retested. For isolates with reaction times of 5 min or more, another extract was prepared from a culture of greater density and the test was redone. For IEF, precast polyacrylamide IEF minigels (ph 3 to 10) (Bio-Rad Laboratories, Hercules, CA) were assembled in a vertical Bio-Rad Mini-Protean II electrophoresis unit. Cathode buffer (20 mm lysine-20 mm arginine) (Bio-Rad) was added to the middle chamber, the wells were flushed, and then 10 l of crude extract was loaded in every second well. An IEF standard with pis ranging from 4.45 to 9.6 (Bio-Rad) was used, and a marker composed of beta-lactamases of known isoelectric points (pis) (bla TEM-1 [pi 5.4], bla TEM-4 [pi 5.9], bla TEM-3 [pi 6.3], bla SHV-3 [pi 7.0], and bla SHV-2 [pi 7.6]) was also used. Approximately 200 ml of anode buffer (7 mm phosphoric acid) (Bio-Rad) was

3 VOL. 44, 2006 GENE PROFILES OF SALMONELLA ENTERICA SEROVAR INFANTIS 2769 FIG. 2. PFGE macro-restriction fragment polymorphism. FIG. 1. PFGE: macro restriction fragment patterns of Salmonella serovar Infantis genome digested with SpeI. Lanes: M, molecular weight marker of Salmonella Branderup strains; A2, PFGE profile of 3 HD strains; C, PFGE profile of a midwestern hospital strain; B, PFGE profile of a northern hospital strain; A1, PFGE profile of 18 HA, 4 HB, 5 HC strains; A3, PFGE profile of 1 HA strain; A5, PFGE profile of 1 HA strain; A4, PFGE profile of 1 HA strain. added to the outer buffer chamber. The electrophoresis unit was placed on a tray and surrounded with ice. Electrophoresis was performed in three steps: 100 V for 1 h, 250 V for another hour, and finally, 500 V for 30 min. IEF gels were then dismantled from the unit, and the glass plates were separated while leaving the gel on one glass plate. To visualize beta-lactamase activity, 1 ml of nitrocefin stock solution (1 mg/ml) was added to 6 ml of molten 3% agarose in 50 mm phosphate buffer (ph 7.5) (cooled to 50 to 60 C), mixed by inversion, and then poured evenly over the gel. The presence of pink/red lines on the gel indicated beta-lactamase activity. Pictures of IEF gels were taken using a dark green filter, and the gels were transilluminated with white light. Detection of antimicrobial resistance genes. PCR was used to detect antimicrobial resistance genes and the presence of integrons in 11 isolates resistant to (at least) the following antimicrobials: ampicillin, chloramphenicol, streptomycin, sulfamethoxazole-trimethoprim, and tetracycline. Most of the primers used for the characterization of pentaresistant Salmonella serovar Typhimurium DT104 were previously described (27), and are all listed in Table 1. The DNA from the reference strains (also listed in Table 1) served as positive controls for the PCRs. Negative controls for PCRs consisted of all the reagents used for each primer pair minus the DNA template. Genomic DNA from cultures grown at 35 C on Mueller-Hinton agar with antimicrobials was extracted with a Puregene kit (Gentra Systems, Inc., Minneapolis, MN). The PCR mix for the detection of resistance genes and integrons included 1.0 M of forward and reverse primers, 1 Taq polymerase buffer, 1.5 mm MgCl 2, 200 M of each deoxynucleotide (datp, dctp, dgtp, and dttp) (Gibco BRL, Burlington, Ontario), U/ l Taq polymerase (Gibco BRL, Burlington, Ontario), and approximately 1 g of template DNA. Amplification conditions for all of the PCRs, except for integron and bla TEM amplification, were 1 cycle at 94 C for 5 min and 35 cycles for 94 C for 1 min, 55 C for 1 min, and 72 C for 1 min 30 s. An annealing temperature of 48 C was used for the amplification of bla TEM. Integron amplification involved 1 cycle at 94 C for 12 min and 35 cycles at 94 C for 1 min, 55 C for 1 min, and 72 C for 5 min. PCR products were analyzed by gel electrophoresis in a 1% agarose gel run at 100 V for 1 h. To visualize band migration, the gel was stained with ethidium bromide and observed under UV light. A 100-bp or 1-kb ladder (Gibco BRL, Ontario) was used to estimate amplicon size. DNA sequencing. Amplicons resulting from PCRs using the primers specific to the 5 conserved and 3 semiconserved segments or universal bla TEM primers were sequenced in both directions using an ABI Prism 377 DNA sequencer (Applied Biosystems Division of Perkin-Elmer, Foster City, CA). DNA sequences were compared to those in the GenBank database (National Center for Biotechnology Information) by using the BLAST suite of sequence similaritysearching programs (3, 4). Pulsed-field gel electrophoresis (PFGE). Genomic DNA was prepared as described previously by Persing et al. (29) with modifications. Serovar Infantis strains were grown in 10 ml of Mueller-Hinton broth at 37 C for 12 to 18 h. Cells were harvested by centrifugation at 2,000 g for 15 min. After discarding the supernatant, cells were resuspended with 1 ml of sterilized saline (0.85% NaCl) and the concentration was adjusted to cells/ml. A 5- l aliquot of cell suspension was added to 300 l of TEN buffer (0.5 M EDTA, 1 M Tris base, 4 M NaCl, ph 7.5) before embedding it in 340 l of low-melting-point agarose (Sigma-Aldrich Corporation, St. Louis, MS). Plugs were subjected to lysis for 5 h at 37 C in EC buffer (0.5 M EDTA, 1 M Tris base, NaCl, N-lauryl sarcosyl, Brij 58, sodium deoxycholate, ph 7.0) (Sigma-Aldrich, MS). RNase (10 mg/ml) (Sigma-Aldrich, MS) was added to the plugs for an overnight incubation at 37 C, and then proteinase K (20 mg/ml; Gibco BRL) treatment of the plugs was performed for 24 h at 54 C. Serovar Infantis strain plugs were washed four times with CHEF-TE 1 buffer (0.5 M EDTA, 1 M Tris base, ph 7.5) (Sigma-Aldrich, MS), followed by four washes with DNS buffer (1 M Tris base, 1 M MgCl 2 ) (Sigma-Aldrich, MS). The digestion step was performed for 20 h at 37 C with the restriction endonuclease SpeI (10 U/ l) (Amersham Pharmacia Biotech, England). Electrophoresis was performed at 6 V/cm for 22 h with switch time intervals of 0.5 to 25 s for 19 h and 30 to 60 s for 3honCHEF DRIII (Bio-Rad Laboratories, Richmond, CA). The agarose gels were stained with ethidium bromide, visualized by UV transillumination, and photographed on Image- Master VDS (Amersham Pharmacia Biotech, England). The fragment restriction patterns were analyzed by BioNumerics (Applied Maths, Belgium) and compared through the construction of a similarity matrix by using the Dice coefficient with a position tolerance setting of 1.0% and optimization setting of 1.0%, which generated a dendrogram. Serovar Branderup was included as a control. A clonal structure definition of serovar Infantis was achieved according to the criteria of Tenover et al., which correlates the number of fragment differences with genetic events (33). Two human epidemiologically unrelated serovar Infantis strains from other public health institutions of northern (a susceptible strain from Pará) and midwestern Brazil (a multidrug-resistant strain from Brasilia) were used to assess the utility of PFGE as an epidemiological marker for nosocomial infections. RESULTS AND DISCUSSION Many researchers are successfully using PFGE to investigate the epidemiologies of strains involved in outbreaks caused by beta-lactamase- and ESBL-producing bacteria (8). The PFGE analysis of the 35 serovar Infantis strains resulted in five PFGE restriction fragment profiles (Fig. 1 and 2). The comparative evaluation of the PFGE profiles yielded four fragment patterns (A1, A3, A4, and A5) for HA isolates. Three HB and five HC

4 2770 FONSECA ET AL. J. CLIN. MICROBIOL. TABLE 2. Antimicrobial resistance and PFGE profiles for serovar Infantis strains isolated between 1996 and 2001 from four Brazilian hospitals Resistance profile(s) a PFGE profile No. of strains Yr of isolation A HA A HC A HA A HA A HA A HB A HD CAZ, CTX, FEP) A HB CTX, CRO, FEP) A HA ACSSuTTmG (ATM, CEF, CXM, A HA ACSSuTTmG (ATM, CEF, CXM, A HD ASSuTTmKG (ATM, CEF, CXM, A HA ACSuTTm (ATM, CEF, CXM, CTX, CRO, FEP) A HA ACSuTTm (ATM, CEF, CXM, CTX, CRO, FEP) A HA ACSuTTmKG (ATM, CEF, CXM, A HA ACSuTTmG (ATM, CEF, CXM, CTX, CRO, FEP) A HA ASTKG (ATM, CEF, CXM, CAZ, FEP) A HD ACT (ATM, CEF, CXM, A HB ACT (ATM, CEF, CXM, A HA ACT (ATM, CEF, CXM, CTX, CRO, FEP) A HC ASTG (ATM, CEF, CAZ, FEP) A HA ASTG (ATM, CEF, CXM, CAZ, FEP) A HA AST (ATM, CEF, CXM, CTX, CRO, FEP) A HA AT (ATM, CEF, CXM, CTX, CRO, FEP) A HA AT (CEF, CXM, CTX, CRO, FEP) A HA ASTK A HA ACSG (CEF) C PHL Susceptible B IEC Hospital b a Cephalosporin and aztreonam resistance profiles are shown in parentheses. A, ampicillin; C, chloramphenicol; S, streptomycin; Su, sulfamethoxazole; T, tetracycline; Tm, trimethoprim; K, kanamycin; G, gentamicin. b PHL, Public Health Laboratory (Brasília, Brazil); IEC, Evandro Chagas Institute (Para, Brazil). isolates had the PFGE profile A1 that was also encountered in 18 HA strains. The three HD strains (PFGE profile A2), isolated in 2001, showed 95% similarity to PFGE profiles A1 and A3 (Fig. 1). Macro-restriction fragment patterns of strains from northern (PFGE profile B) and midwestern (PFGE profile C) regions of Brazil were completely different from those of strains from Rio de Janeiro, Brazil. The A1 profile, found in 26 strains isolated from 1996 to 2001 in HA, HB, and HC, was considered to be the PFGE profile associated with the MDR serovar Infantis outbreaks. The PFGE patterns of serovar Infantis strains were then classified according to their similarities to the outbreak pattern. Patterns that differed from the outbreak pattern by two fragments ( 90%) were considered to be subtypes. A variation of two to three fragments in a PFGE profile can occur when strains are cultured repeatedly or isolated multiple times from the same patient (33). Those patterns that differed by at least four fragments were classified as unrelated types by considering that they derived from two genetic events and their isolating origins. The susceptibility profiles of serovar Infantis are shown in Table 2. All of the strains were susceptible to carbapenem (imipenem), ciprofloxacin, nalidixic acid, and cephamycin (cefoxitin). All of the strains, except for one, were resistant to ampicillin, and most were resistant to cephalosporins (including extended spectrum). It is interesting that strains resistant to the highest number of antimicrobials (resistance profile ACSSuTTmKG, etc. [Table 2]) had similar PFGE profiles and were isolated from 1996 to 2001 from patients in different hospitals. The high prevalence of resistance to these particular antimicrobials may be due to selective pressure since these antimicrobials, with the exception of kanamycin and streptomycin, are among the agents most often prescribed in these hospitals. Resistance to kanamycin and streptomycin, however, may have been acquired through horizontal gene transfer since aminoglycoside resistance genes are often found on plasmids and transposons that encode resistance determinants for other classes of antimicrobials (34, 36). Tetracycline resistance (97.2%) and aztreonam resistance (96.1%) were also common among the multidrug-resistant strains. It is not surprising that the four hospitals involved in this study experienced great difficulties in deciding which antimicrobials to use for treatment. The implementation of effective screening methods for the detection of beta-lactamases and ESBLs as well as the establishment of surveillance programs became key factors in the control of hospital outbreaks (16). PCR detection of resistance genes in nine isolates resistant to five classes of antimicrobials, represented by ampicillin, chloramphenicol, streptomycin, sulfamethoxazole, and tetracycline, showed that all of the strains with the ACSSuTTmKG resistance profile carried bla TEM, cati, aada1, suli, sulii, and tet(d) resistance genes and an integron containing an aac(6 )-Iq gene cassette that codes for amikacin resistance (Table 3). The only variation among these strains was the

5 VOL. 44, 2006 GENE PROFILES OF SALMONELLA ENTERICA SEROVAR INFANTIS 2771 TABLE 3. Antimicrobial resistance genes detected in multidrug-resistant serovar Infantis strains Resistance profile a No. of strains Integron gene b PFGE profile Antimicrobial resistance genes c 6 aac(6 )-Iq A1 bla TEM, cati, aada1, suli/ii, tet(d) 1 aac(6 )-Iq A1 bla TEM, cati, aada1/a2, suli/ii, tet(d) CTX, CAZ, FEP) 1 aac(6 )-Iq A1 bla TEM, cati, aada1, suli/ii, tet(d) CTX, CRO, FEP) 1 aac(6 )-Iq A1 bla TEM, cati, aada1/a2, suli/ii, tet(d) ACSuTTmKG (ATM, CEF, CXM, 1 d aac(6 )-Iq A5 bla TEM, cati, aada1/a2, suli/ii, tet(d) ASSuTKG (ATM, CEF, CXM, 1 A1 bla TEM, aada1/a2, sulii, tet(d) a Cephalosporin and aztreonam resistance profiles are shown in parentheses. A, ampicillin; C, chloramphenicol; S, streptomycin; Su, sulfamethoxazole; T, tetracycline; Tm, trimethoprim; K, kanamycin; G, gentamicin. b The integron cassette size was 1,269 bp. c aada1/a2 or suli/ii indicates the presence of both aada1 and aada2 or both suli and sulii, homologous genes, respectively, within a strain. d This strain was intermediately resistant to streptomycin. presence or absence of the streptomycin/spectinomycin resistance gene aada2, also known as ant(3 )Ib, a variant of the gene aada1 [ant(3 )Ia]. The serovar Infantis strain with the ACSuTTmKG resistance profile was intermediately resistant to streptomycin and yet carried both aada1 and aada2. Redundancy of resistance genes was also detected in 10 strains carrying two sulfonamide resistance genes, suli and sulii. Thirty-two (91.4%) serovar Infantis strains were classified as clavulanic-acid-inhibited ESBL-producing strains according to CLSI standards (21 from HA, 3 from HB, 5 from HC, and 3 from HD). Twenty-two strains (62.8%) were resistant to both CTX and CAZ (Table 2), which suggested the presence of at least one ESBL. According to the beta-lactamase classification scheme of Bush et al. (1995), cefotaximases are class A ESBLs (group 2be) that generally have higher hydrolytic activities against cefotaxime than ceftazidime, while ceftazidimases (also group 2be ESBLs) generally hydrolyze ceftazidime more readily than cefotaxime (10). In addition, group 2be ESBLs inactivate not only extended-spectrum cephalosporins but also monobactams such as aztreonam. Ten of the serovar Infantis strains characterized in this study were resistant to both CTX and CAZ, while only one was resistant to only CTX (Table 3). DNA sequencing of the amplicons obtained with bla TEM primers (which targeted the conserved region of TEM-related enzymes) revealed the presence of the non-esbl bla TEM-1.In order to determine whether more than one beta-lactamase was produced by these 11 multidrug-resistant serovar Infantis strains, isoelectric focusing was performed (Table 4). The pi profiles indicated the presence of beta-lactamases with pi values of 5.4, 6.3, 6.9, and 9.0. The six strains with the antibiogram ACSSuTTmKG (resistance profile, ATM, CEP, CXM, had at least four different beta-lactamases (since there could be more than one betalactamase present in a strain with the same pi value), while another strain with the same resistance profile produced only two types of beta-lactamases (pis 9.0 and 5.4). This result is significant since all seven strains are resistant to CEP, CXM, CAZ, CTX, CRO, and FEP, indicating that resistance to those cephalosporins requires the presence of only two types of betalactamases with pi values of 5.4 and 9.0. In addition, those seven strains are also resistant to the monobactam ATM, which indicates, according to Bush et al., that a group 2be ESBL is present within the strain (10). The presence of identical antimicrobial resistance genes and the close relatedness of strains as determined by PFGE analysis provides evidence that the hospitals involved in this study had a salmonellosis outbreak that was caused by serovar Infantis strains that shared the same phylogenetic lineage. It is important to emphasize that strains from HC were isolated in only 1996, while strains from HB were isolated in 1997 and HA strains were isolated from 1996 to At the beginning of 2001, HD was informed about the characteristics and clonal nature of multidrug-resistant serovar Infantis so that appropriate control measures could be developed and, subsequently, serovar Infantis was no longer detected in the hospital environment. The guidelines and rules that provide for the planning of the National Program of Hospital Infection Control were defined by administrative rule GM as of 12 May, This decree categorizes children hospitalized in high-risk nurseries as intensive-care patients requiring particular attention to infections due to multidrug-resistant pathogens (22). These patients are subjected to standard procedures for controlling nosocomial infections, such as the cleaning and disinfection of medical equipment, frequent hand washing, patient-to-patient contact precautions, and the monitoring of patients stools for the presence of multidrug-resistant serovar Infantis. The best strategy for antimicrobial therapy and specific infection control measures for each patient was determined on a case-by-case basis (1). The results in this study indicate that efficient surveillance programs and effective decontamination procedures must be TABLE 4. -Lactamase profiles detected in multidrug-resistant serovar Infantis strains Resistance profile a CTX, CRO, FEP) CAZ, CTX, FEP) ACSuTTmKG (ATM, CEF, CXM, ASSuTKG (ATM, CEF, CXM, No. of strains PFGE profile Isoelectric points of -lactamases 6 A1 9, 6.9, 6.3, A1 9, A1 9, 6.9, 6.3, A1 9, 6.9, 6.3, A5 9, 6.3, A1 9, 6.9, 5.4 a Cephalosporin and aztreonam resistance profiles are shown in parentheses. A, ampicillin; C, chloramphenicol; S, streptomycin; Su, sulfamethoxazole; T, tetracycline; Tm, trimethoprim; K, kanamycin; G, gentamicin.

6 2772 FONSECA ET AL. J. CLIN. MICROBIOL. implemented for the prevention of nosocomial outbreaks of salmonellosis caused by multidrug-resistant serovar Infantis. ACKNOWLEDGMENTS We thank C. M. F. Reis and A. F. M. Santos (FIOCRUZ, Rio de Janeiro, Brazil) for her collaboration on the PFGE technique and photo documentation and E. Soares and his working group (FIOCRUZ, Rio de Janeiro, Brazil), who provided assistance and supplied reagents. This work was supported by grants from the Oswaldo Cruz Institute Pos-Graduation/FIOCRUZ-Rio de Janeiro and National Council for Scientific and Technological Development (CNPq), Brazil. O. Mykytczuk s student stipend was from the National Microbiology Laboratory and the University of Manitoba, Winnipeg, Manitoba, Canada. REFERENCES 1. Agência Nacional de Vigilância Sanitária (ANVISA) Manual de procedimentos básicos em microbiologia clínica para o controle de infecção hospitalar. [Online.] 2. Alton, N. K., and D. Vapnek Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9. Nature 282: Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman Basic local alignment search tool. J. Mol. Biol. 215: Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: Angulo, F. J., K. R. Johnson, R. V. Tauxe, and M. L. Cohen Origins and consequences of antimicrobial-resistant nontyphoidal Salmonella: implications for the use of fluoroquinolones in food animals. Microb. Drug Resist. 6: Asensi, M. D., and E. Hofer Serovars and multiple drug resistant Salmonella sp. isolated from children in Rio de Janeiro Brazil. Rev. Microbiol. São Paulo 25: Bito, A., and M. Susani Revised analysis of aada2 gene of plasmid psa. Antimicrob. Agents Chemother. 38: Bradford, P. A Extended-spectrum beta-lactamase in the 21st century: characterization, epidemiology, and detection of this important resistance threat. Clin. Microbiol. Rev. 14: Bradley, D. E., D. E. Taylor, and D. R. Cohen Specification of surface mating systems among conjugative drug resistance plasmids in Escherichia coli K-12. J. Bacteriol. 143: Bush, K., G. A. Jacoby, and A. A. Medeiros A functional classification scheme for -lactamases and its correlation with molecular structure. Antimicrob. Agents Chemother. 39: Chiappini, E. L., L. Galli. P. Pecile, A. Vierucci, and M. de Martino Results of a 5-year prospective surveillance study of antibiotic resistance among Salmonella enterica isolates and ceftriaxone therapy among children hospitalized for acute diarrhea. Clin. Ther. 24: Costa, G. A., and E. Hofer Isolamento e identificação de Enterobactérias, p Instituto Oswaldo Cruz FIOCRUZ, Rio de Janeiro, Brazil. 13. De Moraes, B. A., C. A. N. Cravo, M. M. Loureiro, C. A. Solari, and M. D. Asensi Epidemiological analysis of bacterial strains involved in hospital infection in a university hospital from Brazil. Rev. Inst. Med. Trop. São Paulo 42: Edelstain, M., and L. Stratchounski Development of single-strand conformational polymorphism (SSCP) PCR method for discriminatory detection of genes coding for TEM-family -lactamases. Program Abstr. 38th Intersci. Conf. Antimicrob. Agents Chemother., poster E Hansen, L. M., L. M. McMurry, S. B. Levy, and D. C. Hirsh A new tetracycline resistance determinant, Tet H, from Pasteurella multocida specifying active efflux of tetracycline. Antimicrob. Agents Chemother. 37: Kaye, K. S., H. S. Fraimow, and E. Abrutyn Pathogens resistant to antimicrobial agents epidemiology, molecular mechanisms and clinical management. Infect. Dis. Clin. N. Am. 14: Reference deleted. 18. Lévèsque, C., L. Piché, C. Larose, and P. H. Roy PCR mapping of integrons reveals several novel combinations of resistance genes. Antimicrob. Agents Chemother. 39: Marshall, B., S. Morrissey, P. Flynn, and S. B. Levy A new tetracycline-resistant determinant, class E, isolated from Enterobacteriaceae. Gene 50: Marshall, B., C. Tachibana, and S. B. Levy Frequency of tetracycline resistance determinant classes among lactose-fermenting coliforms. Antimicrob. Agents Chemother. 24: Mendez, B., C. Tachibana, and S. B. Levy Heterogeneity of tetracycline resistance determinants. Plasmid 3: Ministério da Saúde Portaria n 2.616, de 12 de maio de Dispõe sobre a obrigatoriedade da manutenção do Programa Nacional de Controle de Infecção Hospitalar. Ministério da Saúde, Brazilia, Brazil. 23. Mulvey, M. R., D. A. Boyd, L. Baker, O. Mykytczuk, E. M. Reis, M. D. Asensi, D. P. Rodrigues, and L. K. Ng Characterization of a Salmonella enterica serovar Agona strain harbouring a class 1 integron containing novel OXA-type -lactamase (bla OXA-53 ) and 6 -N-aminoglycoside acetyltransferase genes [aac(6 )-I30]. J. Antimicrob. Chemother. 54: Murray, I. A., J. V. Martinez-Suarez, T. J. Close, and W. V. Shaw Nucleotide sequences of genes encoding the type II chloramphenicol acetyltransferases of Escherichia coli and Haemophilus influenzae, which are sensitive to inhibition by thiol-reactive reagents. Biochem. J. 272: Murray, I. A., A. R. Hawkins, J. W. Keyte, and W. V. Shaw Nucleotide sequence analysis of overexpression of the gene encoding a type III chloramphenicol acetyltransferase. Biochem. J. 252: NCCLS Performance standards for antimicrobial susceptibility testing; 30th informational supplement. NCCLS document no. M100 S14, vol. 24. NCCLS, Wayne, Pa. 27. Ng, L.-K., M. R. Mulvey, I. Martin, G. A. Peters, and W. Johnson Genetic characterization of antimicrobial resistance in Canadian isolates of Salmonella serovar Typhimurium DT104. Antimicrob. Agents Chemother. 43: Olsen, S. J., R. Bishop, F. W. Brenner, T. H. Roels, N. Bean, R. V. Tauxe, and L. Slutsker The changing epidemiology of Salmonella: trends in serotype isolated from humans in the United States, J. Infect. Dis. 183: Persing, D. H., T. F. Smith, F. C. Tenover, and T. J. White (ed.) Diagnostic molecular microbiology: principles and applications. American Society for Microbiology, Washington, D.C. 29a.Poppof, M. Y Antigenic formulas of the Salmonella serovars. WHO Collaborating Center for Reference and Research for Salmonella Serovars, Institut Pasteur, Paris, France. 30. Pessoa-Silva, C. L., C. M. Toscano, B. M. Moreira, A. L. Santos, A. C. Frota, C. A. Solari, E. L. Amorim, M. da Gloria S. Carvalho, L. M. Teixeira, and W. R. Jarvis Infection due to extended-spectrum beta-lactamaseproducing Salmonella enterica subsp. enterica serovar Infantis in a neonatal unit. J. Pediatr. 141: Rådström, P., and G. Swedberg RSF1010 and a conjugative plasmid contain sulii, one of two known genes for plasmid-borne sulfonamide resistance dihydropteroate synthase. Antimicrob. Agents Chemother. 32: Sundström, L., and O. Sköld The dhfri trimethoprim resistance gene can be found at specific sites in other genetic surroundings. Antimicrob. Agents Chemother. 34: Tenover, F. C., R. D. Arbeit, R. V. Goering, P. A. Mickelsen, B. E. Murray, D. H. Persing, and B. Swaminathan Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J. Clin. Microbiol. 33: Tolmasky, M. E., R. M. Chamorro, J. H. Crosa, and P. M. Marini Transposon-mediated amikacin resistance in Klebsiella pneumoniae. Antimicrob. Agents Chemother. 32: Winokur, P. L., A. Brueggemann, D. L. DeSalvo, L. Hoffmann, M. D. Apley, E. K. Uhlenhopp, M. A. Pfaller, and G. V. Doern Animal and human multidrug-resistant, cephalosporin-resistant Salmonella isolates expressing a plasmid-mediated CMY-2 AmpC beta-lactamase. Antimicrob. Agents Chemother. 44: Vakulenko, S. B., and S. Mobashery Versatility of aminoglycosides and prospects for their future. Clin. Microbiol. Rev. 16: Zhao, J., and T. Aoki Nucleotide sequence analysis of the class G tetracycline resistance determinant from Vibrio anguillarum. Microbiol. Immunol. 36:

SUPPORTING INFORMATION FOR. SEquence-Enabled Reassembly of β-lactamase (SEER-LAC): a Sensitive Method for the Detection of Double-Stranded DNA

SUPPORTING INFORMATION FOR. SEquence-Enabled Reassembly of β-lactamase (SEER-LAC): a Sensitive Method for the Detection of Double-Stranded DNA SUPPORTING INFORMATION FOR SEquence-Enabled Reassembly of β-lactamase (SEER-LAC): a Sensitive Method for the Detection of Double-Stranded DNA Aik T. Ooi, Cliff I. Stains, Indraneel Ghosh *, David J. Segal

More information

Practical Bioinformatics

Practical Bioinformatics 5/2/2017 Dictionaries d i c t i o n a r y = { A : T, T : A, G : C, C : G } d i c t i o n a r y [ G ] d i c t i o n a r y [ N ] = N d i c t i o n a r y. h a s k e y ( C ) Dictionaries g e n e t i c C o

More information

Number-controlled spatial arrangement of gold nanoparticles with

Number-controlled spatial arrangement of gold nanoparticles with Electronic Supplementary Material (ESI) for RSC Advances. This journal is The Royal Society of Chemistry 2016 Number-controlled spatial arrangement of gold nanoparticles with DNA dendrimers Ping Chen,*

More information

Characterization of Multiple-Antimicrobial-Resistant Salmonella Serovars Isolated from Retail Meats

Characterization of Multiple-Antimicrobial-Resistant Salmonella Serovars Isolated from Retail Meats APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Jan. 2004, p. 1 7 Vol. 70, No. 1 0099-2240/04/$08.00 0 DOI: 10.1128/AEM.70.1.1 7.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. Characterization

More information

SUPPLEMENTARY DATA - 1 -

SUPPLEMENTARY DATA - 1 - - 1 - SUPPLEMENTARY DATA Construction of B. subtilis rnpb complementation plasmids For complementation, the B. subtilis rnpb wild-type gene (rnpbwt) under control of its native rnpb promoter and terminator

More information

Characterization of Pathogenic Genes through Condensed Matrix Method, Case Study through Bacterial Zeta Toxin

Characterization of Pathogenic Genes through Condensed Matrix Method, Case Study through Bacterial Zeta Toxin International Journal of Genetic Engineering and Biotechnology. ISSN 0974-3073 Volume 2, Number 1 (2011), pp. 109-114 International Research Publication House http://www.irphouse.com Characterization of

More information

Supplementary Information

Supplementary Information Electronic Supplementary Material (ESI) for RSC Advances. This journal is The Royal Society of Chemistry 2014 Directed self-assembly of genomic sequences into monomeric and polymeric branched DNA structures

More information

Supporting Information

Supporting Information Supporting Information T. Pellegrino 1,2,3,#, R. A. Sperling 1,#, A. P. Alivisatos 2, W. J. Parak 1,2,* 1 Center for Nanoscience, Ludwig Maximilians Universität München, München, Germany 2 Department of

More information

High throughput near infrared screening discovers DNA-templated silver clusters with peak fluorescence beyond 950 nm

High throughput near infrared screening discovers DNA-templated silver clusters with peak fluorescence beyond 950 nm Electronic Supplementary Material (ESI) for Nanoscale. This journal is The Royal Society of Chemistry 2018 High throughput near infrared screening discovers DNA-templated silver clusters with peak fluorescence

More information

Supplemental data. Pommerrenig et al. (2011). Plant Cell /tpc

Supplemental data. Pommerrenig et al. (2011). Plant Cell /tpc Supplemental Figure 1. Prediction of phloem-specific MTK1 expression in Arabidopsis shoots and roots. The images and the corresponding numbers showing absolute (A) or relative expression levels (B) of

More information

Supporting Information for. Initial Biochemical and Functional Evaluation of Murine Calprotectin Reveals Ca(II)-

Supporting Information for. Initial Biochemical and Functional Evaluation of Murine Calprotectin Reveals Ca(II)- Supporting Information for Initial Biochemical and Functional Evaluation of Murine Calprotectin Reveals Ca(II)- Dependence and Its Ability to Chelate Multiple Nutrient Transition Metal Ions Rose C. Hadley,

More information

SSR ( ) Vol. 48 No ( Microsatellite marker) ( Simple sequence repeat,ssr),

SSR ( ) Vol. 48 No ( Microsatellite marker) ( Simple sequence repeat,ssr), 48 3 () Vol. 48 No. 3 2009 5 Journal of Xiamen University (Nat ural Science) May 2009 SSR,,,, 3 (, 361005) : SSR. 21 516,410. 60 %96. 7 %. (),(Between2groups linkage method),.,, 11 (),. 12,. (, ), : 0.

More information

Crick s early Hypothesis Revisited

Crick s early Hypothesis Revisited Crick s early Hypothesis Revisited Or The Existence of a Universal Coding Frame Ryan Rossi, Jean-Louis Lassez and Axel Bernal UPenn Center for Bioinformatics BIOINFORMATICS The application of computer

More information

Clay Carter. Department of Biology. QuickTime and a TIFF (Uncompressed) decompressor are needed to see this picture.

Clay Carter. Department of Biology. QuickTime and a TIFF (Uncompressed) decompressor are needed to see this picture. QuickTime and a TIFF (Uncompressed) decompressor are needed to see this picture. Clay Carter Department of Biology QuickTime and a TIFF (LZW) decompressor are needed to see this picture. Ornamental tobacco

More information

Advanced topics in bioinformatics

Advanced topics in bioinformatics Feinberg Graduate School of the Weizmann Institute of Science Advanced topics in bioinformatics Shmuel Pietrokovski & Eitan Rubin Spring 2003 Course WWW site: http://bioinformatics.weizmann.ac.il/courses/atib

More information

SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS. Prokaryotes and Eukaryotes. DNA and RNA

SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS. Prokaryotes and Eukaryotes. DNA and RNA SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS 1 Prokaryotes and Eukaryotes 2 DNA and RNA 3 4 Double helix structure Codons Codons are triplets of bases from the RNA sequence. Each triplet defines an amino-acid.

More information

Building a Multifunctional Aptamer-Based DNA Nanoassembly for Targeted Cancer Therapy

Building a Multifunctional Aptamer-Based DNA Nanoassembly for Targeted Cancer Therapy Supporting Information Building a Multifunctional Aptamer-Based DNA Nanoassembly for Targeted Cancer Therapy Cuichen Wu,, Da Han,, Tao Chen,, Lu Peng, Guizhi Zhu,, Mingxu You,, Liping Qiu,, Kwame Sefah,

More information

Electronic supplementary material

Electronic supplementary material Applied Microbiology and Biotechnology Electronic supplementary material A family of AA9 lytic polysaccharide monooxygenases in Aspergillus nidulans is differentially regulated by multiple substrates and

More information

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1 Supplementary Figure 1 Zn 2+ -binding sites in USP18. (a) The two molecules of USP18 present in the asymmetric unit are shown. Chain A is shown in blue, chain B in green. Bound Zn 2+ ions are shown as

More information

Table S1. Primers and PCR conditions used in this paper Primers Sequence (5 3 ) Thermal conditions Reference Rhizobacteria 27F 1492R

Table S1. Primers and PCR conditions used in this paper Primers Sequence (5 3 ) Thermal conditions Reference Rhizobacteria 27F 1492R Table S1. Primers and PCR conditions used in this paper Primers Sequence (5 3 ) Thermal conditions Reference Rhizobacteria 27F 1492R AAC MGG ATT AGA TAC CCK G GGY TAC CTT GTT ACG ACT T Detection of Candidatus

More information

NSCI Basic Properties of Life and The Biochemistry of Life on Earth

NSCI Basic Properties of Life and The Biochemistry of Life on Earth NSCI 314 LIFE IN THE COSMOS 4 Basic Properties of Life and The Biochemistry of Life on Earth Dr. Karen Kolehmainen Department of Physics CSUSB http://physics.csusb.edu/~karen/ WHAT IS LIFE? HARD TO DEFINE,

More information

Supplemental Figure 1.

Supplemental Figure 1. A wt spoiiiaδ spoiiiahδ bofaδ B C D E spoiiiaδ, bofaδ Supplemental Figure 1. GFP-SpoIVFA is more mislocalized in the absence of both BofA and SpoIIIAH. Sporulation was induced by resuspension in wild-type

More information

Regulatory Sequence Analysis. Sequence models (Bernoulli and Markov models)

Regulatory Sequence Analysis. Sequence models (Bernoulli and Markov models) Regulatory Sequence Analysis Sequence models (Bernoulli and Markov models) 1 Why do we need random models? Any pattern discovery relies on an underlying model to estimate the random expectation. This model

More information

ydci GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC

ydci GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC Table S1. DNA primers used in this study. Name ydci P1ydcIkd3 Sequence GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC Kd3ydcIp2 lacz fusion YdcIendP1 YdcItrgP2 GAC AGC

More information

The Genetic Epidemiology of Antibiotic Resistance

The Genetic Epidemiology of Antibiotic Resistance The Genetic Epidemiology of Antibiotic Resistance Professor Neil Woodford Antimicrobial Resistance & Healthcare Associated Infections (AMRHAI) Reference Unit Crown copyright The forensics of AMR Resistance

More information

Expansion of Salmonella Typhimurium ST34 clone carrying multiple. resistance determinants in China

Expansion of Salmonella Typhimurium ST34 clone carrying multiple. resistance determinants in China AAC Accepts, published online ahead of print on 24 June 2013 Antimicrob. Agents Chemother. doi:10.1128/aac.01174-13 Copyright 2013, American Society for Microbiology. All Rights Reserved. 1 2 Expansion

More information

evoglow - express N kit distributed by Cat.#: FP product information broad host range vectors - gram negative bacteria

evoglow - express N kit distributed by Cat.#: FP product information broad host range vectors - gram negative bacteria evoglow - express N kit broad host range vectors - gram negative bacteria product information distributed by Cat.#: FP-21020 Content: Product Overview... 3 evoglow express N -kit... 3 The evoglow -Fluorescent

More information

Supplementary Information for

Supplementary Information for Supplementary Information for Evolutionary conservation of codon optimality reveals hidden signatures of co-translational folding Sebastian Pechmann & Judith Frydman Department of Biology and BioX, Stanford

More information

evoglow - express N kit Cat. No.: product information broad host range vectors - gram negative bacteria

evoglow - express N kit Cat. No.: product information broad host range vectors - gram negative bacteria evoglow - express N kit broad host range vectors - gram negative bacteria product information Cat. No.: 2.1.020 evocatal GmbH 2 Content: Product Overview... 4 evoglow express N kit... 4 The evoglow Fluorescent

More information

2 Salmonella Typhimurium

2 Salmonella Typhimurium 96 2006 Salmonella Typhimurium 2 1) 1) 2) 1) 2) 18 1 10 18 4 27 2 Salmonella Typhimurium 1 7 2 7 (ciprofloxacin (CPFX) MIC 16 mg/ml) S. Typhimurium 2 fosfomycin (FOM) 1 PCR gyra parc RAPD-PCR DNA S. Typhimurium

More information

Supplemental Table 1. Primers used for cloning and PCR amplification in this study

Supplemental Table 1. Primers used for cloning and PCR amplification in this study Supplemental Table 1. Primers used for cloning and PCR amplification in this study Target Gene Primer sequence NATA1 (At2g393) forward GGG GAC AAG TTT GTA CAA AAA AGC AGG CTT CAT GGC GCC TCC AAC CGC AGC

More information

The role of the FliD C-terminal domain in pentamer formation and

The role of the FliD C-terminal domain in pentamer formation and The role of the FliD C-terminal domain in pentamer formation and interaction with FliT Hee Jung Kim 1,2,*, Woongjae Yoo 3,*, Kyeong Sik Jin 4, Sangryeol Ryu 3,5 & Hyung Ho Lee 1, 1 Department of Chemistry,

More information

TM1 TM2 TM3 TM4 TM5 TM6 TM bp

TM1 TM2 TM3 TM4 TM5 TM6 TM bp a 467 bp 1 482 2 93 3 321 4 7 281 6 21 7 66 8 176 19 12 13 212 113 16 8 b ATG TCA GGA CAT GTA ATG GAG GAA TGT GTA GTT CAC GGT ACG TTA GCG GCA GTA TTG CGT TTA ATG GGC GTA GTG M S G H V M E E C V V H G T

More information

6.047 / Computational Biology: Genomes, Networks, Evolution Fall 2008

6.047 / Computational Biology: Genomes, Networks, Evolution Fall 2008 MIT OpenCourseWare http://ocw.mit.edu 6.047 / 6.878 Computational Biology: Genomes, Networks, Evolution Fall 2008 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms.

More information

Modelling and Analysis in Bioinformatics. Lecture 1: Genomic k-mer Statistics

Modelling and Analysis in Bioinformatics. Lecture 1: Genomic k-mer Statistics 582746 Modelling and Analysis in Bioinformatics Lecture 1: Genomic k-mer Statistics Juha Kärkkäinen 06.09.2016 Outline Course introduction Genomic k-mers 1-Mers 2-Mers 3-Mers k-mers for Larger k Outline

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION DOI:.38/NCHEM.246 Optimizing the specificity of nucleic acid hyridization David Yu Zhang, Sherry Xi Chen, and Peng Yin. Analytic framework and proe design 3.. Concentration-adjusted

More information

World Journal of Pharmaceutical Research SJIF Impact Factor 8.074

World Journal of Pharmaceutical Research SJIF Impact Factor 8.074 SJIF Impact Factor 8.074 Volume 7, Issue 5, 966-973. Research Article ISSN 2277 7105 MOLECULAR DETECTION OF ENTEROTOXIGENIC ISOLATES OF SALMONELLA TYPHIMURIUM, SHIGELLA FLEXNERI AND STAPHYLOCOCCUS AUREUS

More information

By Eliza Bielak Bacterial Genomics and Epidemiology, DTU-Food Supervised by Henrik Hasman, PhD

By Eliza Bielak Bacterial Genomics and Epidemiology, DTU-Food Supervised by Henrik Hasman, PhD By Eliza Bielak Bacterial Genomics and Epidemiology, DTU-Food elibi@food.dtu.dk Supervised by Henrik Hasman, PhD 1. Introduction to plasmid biology 2. Plasmid encoded resistance to β- lactams (basic theories)

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI:.8/NCHEM. Conditionally Fluorescent Molecular Probes for Detecting Single Base Changes in Double-stranded DNA Sherry Xi Chen, David Yu Zhang, Georg Seelig. Analytic framework and probe design.. Design

More information

Distribution of virulence genes in Salmonella serovars isolated from man & animals

Distribution of virulence genes in Salmonella serovars isolated from man & animals Indian J Med Res 117, February 2003, pp 66-70 Distribution of virulence genes in Salmonella serovars isolated from man & animals H.V. Murugkar*, H. Rahman* & P.K. Dutta Department of Microbiology, College

More information

Validation of EUCAST zone diameter breakpoints against reference broth microdilution

Validation of EUCAST zone diameter breakpoints against reference broth microdilution ORIGINAL ARTICLE BACTERIOLOGY Validation of EUCAST zone diameter breakpoints against reference broth microdilution S. Bengtsson 1, C. Bjelkenbrant 1 and G. Kahlmeter 1,2 1) Department of Clinical Microbiology,

More information

3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies

3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies Richard Owen (1848) introduced the term Homology to refer to structural similarities among organisms. To Owen, these similarities indicated that organisms were created following a common plan or archetype.

More information

Re- engineering cellular physiology by rewiring high- level global regulatory genes

Re- engineering cellular physiology by rewiring high- level global regulatory genes Re- engineering cellular physiology by rewiring high- level global regulatory genes Stephen Fitzgerald 1,2,, Shane C Dillon 1, Tzu- Chiao Chao 2, Heather L Wiencko 3, Karsten Hokamp 3, Andrew DS Cameron

More information

Evolvable Neural Networks for Time Series Prediction with Adaptive Learning Interval

Evolvable Neural Networks for Time Series Prediction with Adaptive Learning Interval Evolvable Neural Networs for Time Series Prediction with Adaptive Learning Interval Dong-Woo Lee *, Seong G. Kong *, and Kwee-Bo Sim ** *Department of Electrical and Computer Engineering, The University

More information

Escherichia coli O26 9

Escherichia coli O26 9 15 Vero b- (ESBL) Escherichia coli O26 1 1) 1) 2) 2) 2) 2) 3) 3) 1) 1) 2) 2 3) 16 10 18 16 12 17 Vero b- (Extended-spectrum b-lactamase: ESBL) Escherichia coli O26 9 2004 6 14 16 E. coli O O26 Vero VT1

More information

Why do more divergent sequences produce smaller nonsynonymous/synonymous

Why do more divergent sequences produce smaller nonsynonymous/synonymous Genetics: Early Online, published on June 21, 2013 as 10.1534/genetics.113.152025 Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?

More information

Received 9 June 2003/Accepted 29 September 2003

Received 9 June 2003/Accepted 29 September 2003 APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Jan. 2004, p. 318 323 Vol. 70, No. 1 0099-2240/04/$08.00 0 DOI: 10.1128/AEM.70.1.318 323.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved.

More information

Characterization of Class 1 Integrons and Antimicrobial Resistance in CTX-M-3-Producing Serratia marcescens Isolates from Southern Taiwan

Characterization of Class 1 Integrons and Antimicrobial Resistance in CTX-M-3-Producing Serratia marcescens Isolates from Southern Taiwan Jpn. J. Infect. Dis., 60, 250-256, 2007 Original Article Characterization of Class 1 Integrons and Antimicrobial Resistance in CTX-M-3-Producing Serratia marcescens Isolates from Southern Taiwan Chien-Fang

More information

The Trigram and other Fundamental Philosophies

The Trigram and other Fundamental Philosophies The Trigram and other Fundamental Philosophies by Weimin Kwauk July 2012 The following offers a minimal introduction to the trigram and other Chinese fundamental philosophies. A trigram consists of three

More information

Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi

Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Supporting Information http://www.genetics.org/cgi/content/full/genetics.110.116228/dc1 Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Ben

More information

Supplementary Information

Supplementary Information Supplementary Information Arginine-rhamnosylation as new strategy to activate translation elongation factor P Jürgen Lassak 1,2,*, Eva Keilhauer 3, Max Fürst 1,2, Kristin Wuichet 4, Julia Gödeke 5, Agata

More information

ChemiScreen CaS Calcium Sensor Receptor Stable Cell Line

ChemiScreen CaS Calcium Sensor Receptor Stable Cell Line PRODUCT DATASHEET ChemiScreen CaS Calcium Sensor Receptor Stable Cell Line CATALOG NUMBER: HTS137C CONTENTS: 2 vials of mycoplasma-free cells, 1 ml per vial. STORAGE: Vials are to be stored in liquid N

More information

Characteristics of extended-spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates from horses

Characteristics of extended-spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates from horses Veterinary Microbiology 124 (2007) 248 255 www.elsevier.com/locate/vetmic Characteristics of extended-spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates from horses An

More information

Identification of a Locus Involved in the Utilization of Iron by Haemophilus influenzae

Identification of a Locus Involved in the Utilization of Iron by Haemophilus influenzae INFECrION AND IMMUNITY, OCt. 1994, p. 4515-4525 0019-9567/94/$04.00+0 Copyright 1994, American Society for Microbiology Vol. 62, No. 10 Identification of a Locus Involved in the Utilization of Iron by

More information

Protein Threading. Combinatorial optimization approach. Stefan Balev.

Protein Threading. Combinatorial optimization approach. Stefan Balev. Protein Threading Combinatorial optimization approach Stefan Balev Stefan.Balev@univ-lehavre.fr Laboratoire d informatique du Havre Université du Havre Stefan Balev Cours DEA 30/01/2004 p.1/42 Outline

More information

Two novel Salmonella genomic island 1 variants in Proteus mirabilis

Two novel Salmonella genomic island 1 variants in Proteus mirabilis AAC Accepted Manuscript Posted Online 27 April 2015 Antimicrob. Agents Chemother. doi:10.1128/aac.00120-15 Copyright 2015, American Society for Microbiology. All Rights Reserved. 1 2 Two novel Salmonella

More information

The 3 Genomic Numbers Discovery: How Our Genome Single-Stranded DNA Sequence Is Self-Designed as a Numerical Whole

The 3 Genomic Numbers Discovery: How Our Genome Single-Stranded DNA Sequence Is Self-Designed as a Numerical Whole Applied Mathematics, 2013, 4, 37-53 http://dx.doi.org/10.4236/am.2013.410a2004 Published Online October 2013 (http://www.scirp.org/journal/am) The 3 Genomic Numbers Discovery: How Our Genome Single-Stranded

More information

Whole genome sequencing (WGS) as a tool for monitoring purposes. Henrik Hasman DTU - Food

Whole genome sequencing (WGS) as a tool for monitoring purposes. Henrik Hasman DTU - Food Whole genome sequencing (WGS) as a tool for monitoring purposes Henrik Hasman DTU - Food The Challenge Is to: Continue to increase the power of surveillance and diagnostic using molecular tools Develop

More information

FliZ Is a Posttranslational Activator of FlhD 4 C 2 -Dependent Flagellar Gene Expression

FliZ Is a Posttranslational Activator of FlhD 4 C 2 -Dependent Flagellar Gene Expression JOURNAL OF BACTERIOLOGY, July 2008, p. 4979 4988 Vol. 190, No. 14 0021-9193/08/$08.00 0 doi:10.1128/jb.01996-07 Copyright 2008, American Society for Microbiology. All Rights Reserved. FliZ Is a Posttranslational

More information

Codon Distribution in Error-Detecting Circular Codes

Codon Distribution in Error-Detecting Circular Codes life Article Codon Distribution in Error-Detecting Circular Codes Elena Fimmel, * and Lutz Strüngmann Institute for Mathematical Biology, Faculty of Computer Science, Mannheim University of Applied Sciences,

More information

Chain-like assembly of gold nanoparticles on artificial DNA templates via Click Chemistry

Chain-like assembly of gold nanoparticles on artificial DNA templates via Click Chemistry Electronic Supporting Information: Chain-like assembly of gold nanoparticles on artificial DNA templates via Click Chemistry Monika Fischler, Alla Sologubenko, Joachim Mayer, Guido Clever, Glenn Burley,

More information

Pathways and Controls of N 2 O Production in Nitritation Anammox Biomass

Pathways and Controls of N 2 O Production in Nitritation Anammox Biomass Supporting Information for Pathways and Controls of N 2 O Production in Nitritation Anammox Biomass Chun Ma, Marlene Mark Jensen, Barth F. Smets, Bo Thamdrup, Department of Biology, University of Southern

More information

Why the CDS? The unique advantages of using an Australian antimicrobial susceptibility testing method

Why the CDS? The unique advantages of using an Australian antimicrobial susceptibility testing method Why the CDS? The unique advantages of using an Australian antimicrobial susceptibility testing method Peter Newton Medical Microbiologist Wollongong Hospital, Wollongong, NSW Where do I come from? SEALS

More information

The New England Journal of Medicine

The New England Journal of Medicine The New England Journal of Medicine Copyright by the Massachusetts Medical Society VOLUME 5 O CTOBER 8, NUMBER 6 THE ISOLATION OF ANTIBIOTIC-RESISTANT SALMONELLA FROM RETAIL GROUND MEATS DAVID G. WHITE,

More information

AtTIL-P91V. AtTIL-P92V. AtTIL-P95V. AtTIL-P98V YFP-HPR

AtTIL-P91V. AtTIL-P92V. AtTIL-P95V. AtTIL-P98V YFP-HPR Online Resource 1. Primers used to generate constructs AtTIL-P91V, AtTIL-P92V, AtTIL-P95V and AtTIL-P98V and YFP(HPR) using overlapping PCR. pentr/d- TOPO-AtTIL was used as template to generate the constructs

More information

Resistance of Escherichia coli and Salmonella typhimurium to Carbenicillin

Resistance of Escherichia coli and Salmonella typhimurium to Carbenicillin J. gen. Microbiol. (1969, 58, 301-305 Printed in Great Britain 301 Resistance of Escherichia coli and Salmonella typhimurium to Carbenicillin By H. C. NEU AND H. S,WARZ Department of Medicine, College

More information

Received 11 February 2010/Accepted 6 July 2010

Received 11 February 2010/Accepted 6 July 2010 APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Sept. 2010, p. 5947 5959 Vol. 76, No. 17 0099-2240/10/$12.00 doi:10.1128/aem.00377-10 Copyright 2010, American Society for Microbiology. All Rights Reserved. The

More information

Supplementary Materials for

Supplementary Materials for www.sciencetranslationalmedicine.org/cgi/content/full/4/148/148ra116/dc1 Supplementary Materials for Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing

More information

Resistance to third-generation cephalosporins in human non-typhoidal Salmonella enterica isolates from England and Wales,

Resistance to third-generation cephalosporins in human non-typhoidal Salmonella enterica isolates from England and Wales, Royal College of Surgeons in Ireland e-publications@rcsi Clinical Microbiology Articles Department of Clinical Microbiology 1-4-2014 Resistance to third-generation cephalosporins in human non-typhoidal

More information

part 3: analysis of natural selection pressure

part 3: analysis of natural selection pressure part 3: analysis of natural selection pressure markov models are good phenomenological codon models do have many benefits: o principled framework for statistical inference o avoiding ad hoc corrections

More information

Timing molecular motion and production with a synthetic transcriptional clock

Timing molecular motion and production with a synthetic transcriptional clock Timing molecular motion and production with a synthetic transcriptional clock Elisa Franco,1, Eike Friedrichs 2, Jongmin Kim 3, Ralf Jungmann 2, Richard Murray 1, Erik Winfree 3,4,5, and Friedrich C. Simmel

More information

b-lactam resistance and b-lactamase expression in clinical Stenotrophomonas maltophilia isolates having defined phylogenetic relationships

b-lactam resistance and b-lactamase expression in clinical Stenotrophomonas maltophilia isolates having defined phylogenetic relationships Journal of Antimicrobial Chemotherapy Advance Access published December 13, 2005 Journal of Antimicrobial Chemotherapy doi:10.1093/jac/dki453 b-lactam resistance and b-lactamase expression in clinical

More information

Near-instant surface-selective fluorogenic protein quantification using sulfonated

Near-instant surface-selective fluorogenic protein quantification using sulfonated Electronic Supplementary Material (ESI) for rganic & Biomolecular Chemistry. This journal is The Royal Society of Chemistry 2014 Supplemental nline Materials for ear-instant surface-selective fluorogenic

More information

Screening Extended-spectrum b-lactamase Production in Enterobacter cloacae and Serratia marcescens Using Antibiogram-based Methods

Screening Extended-spectrum b-lactamase Production in Enterobacter cloacae and Serratia marcescens Using Antibiogram-based Methods J Microbiol Immunol Infect 2010;43(1):26 34 Contents lists available at ScienceDirect Journal of Microbiology, Immunology and Infection Journal homepage: http://www.e-jmii.com Original Article Screening

More information

Report: antimicrobial resistance in commensal E. coli from poultry, pigs, cows and veal calves. 2014

Report: antimicrobial resistance in commensal E. coli from poultry, pigs, cows and veal calves. 2014 CODA-CERVA Report: antimicrobial resistance in commensal E. coli from poultry, pigs, cows and veal calves. 2014 Vicky Jasson and Pierre Wattiau Veterinary and Agrochemical Research Centre 1 Introduction

More information

Whole genome sequencing (WGS) - there s a new tool in town. Henrik Hasman DTU - Food

Whole genome sequencing (WGS) - there s a new tool in town. Henrik Hasman DTU - Food Whole genome sequencing (WGS) - there s a new tool in town Henrik Hasman DTU - Food Welcome to the NGS world TODAY Welcome Introduction to Next Generation Sequencing DNA purification (Hands-on) Lunch (Sandwishes

More information

ESCMID Online Lecture Library

ESCMID Online Lecture Library E. coli producing extendedspectrum β lactamases Luis Martínez Martínez Dept. Molecular Biology, University of Cantabria Service of Microbiology Hosp. Univ. Marqués de Valdecilla Santander, Spain Barcelona

More information

ANTIMICROBIAL TESTING. E-Coli K-12 - E-Coli 0157:H7. Salmonella Enterica Servoar Typhimurium LT2 Enterococcus Faecalis

ANTIMICROBIAL TESTING. E-Coli K-12 - E-Coli 0157:H7. Salmonella Enterica Servoar Typhimurium LT2 Enterococcus Faecalis ANTIMICROBIAL TESTING E-Coli K-12 - E-Coli 0157:H7 Salmonella Enterica Servoar Typhimurium LT2 Enterococcus Faecalis Staphylococcus Aureus (Staph Infection MRSA) Streptococcus Pyrogenes Anti Bacteria effect

More information

Biosynthesis of Bacterial Glycogen: Primary Structure of Salmonella typhimurium ADPglucose Synthetase as Deduced from the

Biosynthesis of Bacterial Glycogen: Primary Structure of Salmonella typhimurium ADPglucose Synthetase as Deduced from the JOURNAL OF BACTERIOLOGY, Sept. 1987, p. 4355-4360 0021-9193/87/094355-06$02.00/0 Copyright X) 1987, American Society for Microbiology Vol. 169, No. 9 Biosynthesis of Bacterial Glycogen: Primary Structure

More information

Emergence of CTX-M-15 type extended-spectrum b-lactamase-producing Salmonella spp. in Kuwait and the United Arab Emirates

Emergence of CTX-M-15 type extended-spectrum b-lactamase-producing Salmonella spp. in Kuwait and the United Arab Emirates Journal of Medical Microbiology (2008), 57, 881 886 DOI 10.1099/jmm.0.47509-0 Emergence of CTX-M-15 type extended-spectrum b-lactamase-producing Salmonella spp. in Kuwait and the United Arab Emirates Vincent

More information

Supplementary Figure 1. Schematic of split-merger microfluidic device used to add transposase to template drops for fragmentation.

Supplementary Figure 1. Schematic of split-merger microfluidic device used to add transposase to template drops for fragmentation. Supplementary Figure 1. Schematic of split-merger microfluidic device used to add transposase to template drops for fragmentation. Inlets are labelled in blue, outlets are labelled in red, and static channels

More information

Molecular characterization of antimicrobial resistance in Salmonella isolated from animals in Japan

Molecular characterization of antimicrobial resistance in Salmonella isolated from animals in Japan Journal of Applied Microbiology ISSN 1364-5072 ORIGINAL ARTICLE Molecular characterization of antimicrobial resistance in Salmonella isolated from animals in Japan A.M. Ahmed 1,2, Y. Ishida 1 and T. Shimamoto

More information

3 S. Heidelberg ESBL Extended spectrum lactamase

3 S. Heidelberg ESBL Extended spectrum lactamase Vol. 25 No. 123 almonella Heidelberg 1 almonella enterica serovar Heidelberg 1 3. Heidelberg EBL Extended spectrum lactamase CTX M 2 EBL. Heidelberg almonella enterica serovar Heidelberg 1 3. Heidelberg

More information

Supporting Information

Supporting Information Supporting Information Mixed DNA-functionalized Nanoparticle Probes for Surface Enhanced Raman Scattering-based Multiplex DNA Detection Zhiliang Zhang, a, b Yongqiang Wen,* a Ying Ma, a Jia Luo, a Lei

More information

ACCEPTED. from Poultry and Humans in Belgium and France,

ACCEPTED. from Poultry and Humans in Belgium and France, AAC Accepts, published online ahead of print on February 00 Antimicrob. Agents Chemother. doi:./aac.0-0 Copyright 00, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights

More information

ANALYZING THE DIVERSITY OF A SMALL ANTIBODY MIMIC LIBRARY. Nick Empey. Chapel Hill 2010

ANALYZING THE DIVERSITY OF A SMALL ANTIBODY MIMIC LIBRARY. Nick Empey. Chapel Hill 2010 ANALYZING THE DIVERSITY OF A SMALL ANTIBODY MIMIC LIBRARY Nick Empey A thesis submitted to the faculty of the University of North Carolina at Chapel Hill in partial fulfillment of the requirements for

More information

Molecular Characterization of Antibiotic-Resistant Salmonella Isolates from Retail Meat from Markets in Northern Vietnam

Molecular Characterization of Antibiotic-Resistant Salmonella Isolates from Retail Meat from Markets in Northern Vietnam 1709 Journal of Food Protection, Vol. 75, No. 9, 2012, Pages 1709 1714 doi:10.4315/0362-028x.12-101 Copyright G, International Association for Food Protection Research Note Molecular Characterization of

More information

Survey of plasmid profiles of Shigella species isolated in Malaysia during

Survey of plasmid profiles of Shigella species isolated in Malaysia during World Journal of Microbiology & Biotechnology (2005) 21: 271 278 Ó Springer 2005 DOI 10.1007/s11274-004-3631-0 Survey of plasmid profiles of Shigella species isolated in Malaysia during 1994 2000 C.H.

More information

Encoding of Amino Acids and Proteins from a Communications and Information Theoretic Perspective

Encoding of Amino Acids and Proteins from a Communications and Information Theoretic Perspective Jacobs University Bremen Encoding of Amino Acids and Proteins from a Communications and Information Theoretic Perspective Semester Project II By: Dawit Nigatu Supervisor: Prof. Dr. Werner Henkel Transmission

More information

Salmonella enteritidis Identification and Isolation

Salmonella enteritidis Identification and Isolation Department of Microbiology, Qom Branch, Islamic Azad University. Qom, Iran Start Here Advisor Dr.Mohsen Zargar Consulting Advisor Dr.Taghi Salehi Zahraei Presented by Zeinab Yazdanpanah 1 Outcome Enterobacteriaceae

More information

DEVELOPMENT OF AN AFLP-BASED TYPING SYSTEM FOR THE GENUS PANTOEA

DEVELOPMENT OF AN AFLP-BASED TYPING SYSTEM FOR THE GENUS PANTOEA DEVELOPMENT OF AN AFLP-BASED TYPING SYSTEM FOR THE GENUS PANTOEA 5.1) Introduction: Since the first description of Pantoea ananatis in 1928 (Serrano, 1928), this bacterium has been subsequently isolated

More information

Chemical Biology on Genomic DNA: minimizing PCR bias. Electronic Supplementary Information (ESI) for Chemical Communications

Chemical Biology on Genomic DNA: minimizing PCR bias. Electronic Supplementary Information (ESI) for Chemical Communications Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2014 Chemical Biology on Genomic DA: minimizing PCR bias Gordon R. McInroy, Eun-Ang Raiber, & Shankar

More information

160, and 220 bases, respectively, shorter than pbr322/hag93. (data not shown). The DNA sequence of approximately 100 bases of each

160, and 220 bases, respectively, shorter than pbr322/hag93. (data not shown). The DNA sequence of approximately 100 bases of each JOURNAL OF BACTEROLOGY, JUlY 1988, p. 3305-3309 0021-9193/88/073305-05$02.00/0 Copyright 1988, American Society for Microbiology Vol. 170, No. 7 Construction of a Minimum-Size Functional Flagellin of Escherichia

More information

AAC Accepts, published online ahead of print on 20 August 2007 Antimicrob. Agents Chemother. doi: /aac

AAC Accepts, published online ahead of print on 20 August 2007 Antimicrob. Agents Chemother. doi: /aac AAC Accepts, published online ahead of print on 20 August 2007 Antimicrob. Agents Chemother. doi:10.1128/aac.00614-07 Copyright 2007, American Society for Microbiology and/or the Listed Authors/Institutions.

More information

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila biorxiv preprint first posted online May. 3, 2016; doi: http://dx.doi.org/10.1101/051557. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. All rights reserved.

More information

Emergence of Multidrug-Resistant Salmonella enterica Serovar Typhi in Korea

Emergence of Multidrug-Resistant Salmonella enterica Serovar Typhi in Korea ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Nov. 2004, p. 4130 4135 Vol. 48, No. 11 0066-4804/04/$08.00 0 DOI: 10.1128/AAC.48.11.4130 4135.2004 Copyright 2004, American Society for Microbiology. All Rights

More information

Pseudomonas putida 5

Pseudomonas putida 5 Pseudomonas putida 1 1 2 1 2 1 2 14 1 8 14 12 16 1997 1 21 12 5 Pseudomonas putida 8 27 imipenemipm IPM piperacillinceftazidimeamikacin norfloxacin 27 IPM IMP blaimp P. putida blaimp 27 8 9 4 1 MIC P.

More information

Title: Emergence of azithromycin resistance mediated by mph(a) gene in Salmonella Typhimurium clinical isolates in Latin America

Title: Emergence of azithromycin resistance mediated by mph(a) gene in Salmonella Typhimurium clinical isolates in Latin America Accepted Manuscript Title: Emergence of azithromycin resistance mediated by mph(a) gene in Salmonella Typhimurium clinical isolates in Latin America Author: Diego Faccone S13-71(18)30078-X https://doi.org/101/j.jgar.018.04.011

More information

The New England Journal of Medicine CEFTRIAXONE-RESISTANT SALMONELLA INFECTION ACQUIRED BY A CHILD FROM CATTLE

The New England Journal of Medicine CEFTRIAXONE-RESISTANT SALMONELLA INFECTION ACQUIRED BY A CHILD FROM CATTLE CEFTRIAXONE-RESISTANT SALMONELLA INFECTION ACQUIRED BY A CHILD FROM CATTLE PAUL D. FEY, PH.D., THOMAS J. SAFRANEK, M.D., MARK E. RUPP, M.D., EILEEN F. DUNNE, M.D., M.P.H., EFRAIN RIBOT, PH.D., PETER C.

More information

Rapid detection of extended-spectrum ß-lactamase-producing. Enterobacteriaceae

Rapid detection of extended-spectrum ß-lactamase-producing. Enterobacteriaceae JCM Accepts, published online ahead of print on 3 July 2012 J. Clin. Microbiol. doi:10.1128/jcm.00859-12 Copyright 2012, American Society for Microbiology. All Rights Reserved. 1 2 Rapid detection of extended-spectrum

More information