Supplemental data. Pommerrenig et al. (2011). Plant Cell /tpc

Size: px
Start display at page:

Download "Supplemental data. Pommerrenig et al. (2011). Plant Cell /tpc"

Transcription

1 Supplemental Figure 1. Prediction of phloem-specific MTK1 expression in Arabidopsis shoots and roots. The images and the corresponding numbers showing absolute (A) or relative expression levels (B) of MTK1 were calculated by the Translatome efp Browser ( for At1g49820.

2 Supplemental Figure 2. Predictions of the phloem-specific expression of MTN and ARD genes in Arabidopsis shoots. The images and the corresponding numbers showing the relative expression of (A) the MTN1 and MTN2 genes and (B) of the ARD1 to ARD4 genes in different tissues of Arabidopsis shoots were taken from the Translatome efp Browser ( and assembled. 2

3 Supplemental Figure 3. Predictions of the expression pattern of MTI1 and DEP1 in Arabidopsis shoots. The images and the corresponding numbers showing the relative expressions of MTI1 and DEP1 in different tissues of Arabidopsis shoots were taken from the Translatome efp Browser ( 3

4 Supplemental Figure 4. Polyamine biosynthesis and polyamine biosynthetic enzymes in Arabidopsis. Intermediates of polyamine biosynthesis, abbreviations of gene names, MIPSnumbers and images showing the relative expressions in different Arabidopsis leaf tissues (Translatome efp Browser; are presented. 4

5 Supplemental Figure 5. Predictions of the expression patterns of transaminases potentially involved in the formation of Met from KMTB in the Arabidopsis vasculature. The images and the corresponding numbers showing the relative expressions of AAT, ASP2, ASP3 and ASP5 in different tissues of Arabidopsis shoots were taken from the Translatome efp Browser ( 5

6 Metabolites Elemental composition Phase RT (min) Identified ion m/z Mass accuracy (mda) 1 MS/MS Fragments (m/z) Coelution Disaccharides C 12H 22O 11 unpolar 0.43 [M+HCO 2] , 89, 101, 113, 134, 179 Monosaccharides C 6H 12O 6 unpolar 0.43 [M+HCO 2] , 89, 101, 113, 119, 131, 143, 179 Arginine C 6H 14N 4O 2 polar 0.38 [M+H] , 116, 142, 175 Methionine C 5H 11NO 2S polar 0.52 [M+H] SAM C 15H 22N 6O 5S polar 0.46 [M+H] Collision energy Ratio of S32/S34 Isotopomer (%) MTA C 11H 15N 5O 3S polar 0.88 [M+H] (6.1) 2 1 Mass difference between calculated and experimental mass (as neutral mass) 2 Theoretical value for C 11H 15N 5O 3S calculated by the software Isotopident ( Supplemental Table 1. Data confirming identification of differentially accumulating metabolites. 6

7 AtARD1p-f AtARD1-r AtARD2p-f AtARD2-r AtARD3p-f AtARD3p-r AtARD4p-f AtARD4-r AtDEP1-1649f AtDEP1+3660r AtDEP1c+1f AtDEP1c+1524r AtMTI1-1925f AtMTI1+2078r AtMTI1c+1f AtMTI1c+1125r AtMTKp-f AtMTKp-r AtMTN1p-f AtMTN1p-r AtSAMDC2-1231f AtSAMDC2-1r PmACL5A-fwd PmACL5A-rev PmACL5B-fwd PmACL5B-rev PmACO1-fwd PmACO1-rev PmALDP1-fwd 5 -CAC CCA TTT TGC AGC CAA TCC AAT-3 (At ARD1 promoter-gene fragment) 5 -TTT AGC CGA GGC ATT GAT CAT GAA G-3 (At ARD1 promoter-gene fragment) 5 -CAC CGA GGA AAC TTG GCT TGC TTG-3 (ARD2 promoter-gene fragment) 5 -GGC TGA CGC GTC TAT GAC ACC A-3 (ARD2 promoter-gene fragment) 5 -CAC CAC AGG AAA CTT GGC CAA CAC-3 (At ARD3 promoter) 5 -GGT TAT TCT TCT TTT GTG TTC A-3 (At ARD3 promoter) 5 -CAC CGG CCG TTG AAA TCT TGG TTA-3 (At ARD4 promoter-gene fragment) 5 -ATG TGC TTT AAC GGT TTC TCC A-3 (At ARD4 promoter-gene fragment) 5 -CAC CAT CTG CGA CAC AAT CTG CTG-3 (At DEP1 promoter-gene fragment) 5 -CAC CAT CTG CGA CAC AAT CTG CTG-3 (At DEP1 promoter-gene fragment) 5 -TCT CTG CGG CCG CAA GCT TGT AAA AGA AAT GGC GGT GGC TGC AGC GG-3 (At DEP1) 5 -TCT CTG CGG CCG CCT AGA TTT GGG AGA ATG ATG TGA CAG TCT-3 (At DEP1) 5 -CAC CTG AAA GAG GCC TAG CGA AGA-3 (At MTI1 promoter-gene fragment) 5 -CCA AGA AGA TAA CAG GAA ACT CAT CTC GT-3 (At MTI1 promoter-gene fragment) 5 -TCT CTG AAT TCA AGC TTG TAA AAG AAA TGT CCG GCG AAG GAG ACA CGA C-3 (At MTI1) 5 -TCT CTG AAT TCT CAA CGA GAT GAG TTT CCT GTT ATC TTC TTG-3 (At MTI1) 5 -CAA ATC ATT TTT ATA CCT CGA TGC-3 (At MTK promoter) 5 -GGC TTT TGG TAC AAA TTT TCA GA-3 (At MTK promoter) 5 -CAC CAG CGA AAA CAC CTT TGA TGG-3 (At MTN1 promoter) 5 -AAC CTT ATC CCT CTC TTC CG-3 (At MTN1 promoter) 5 -CAC CCA CGG GAA GAT AAC AAG GTC A-3 (At SAMDC2 promoter) 5 -ATA ATC TCA TTC ACG CTT TTT C-3 (At SAMDC2 promoter) 5 -ATC TTG AAG CCC AAG CTG AA-3 (Pm ACL5A) 5 -CTT CGA TGC TGA GTG GTT GA-3 (Pm ACL5A) 5 -AAA TGG GAG TGG TCA TGG AG-3 (Pm ACL5B) 5 -TGG ATT TGG ATG ATT CAG CA-3 (Pm ACL5B) 5 -CAA AGG CCT TGA AGC TGT TC-3 (Pm ACO1) 5 -GGA GCT GAA GAC CAC TGA CC-3 (Pm ACO1) 5 -TCC AAG GGT TCA GAG T-3 (Pm ALDP1) 7

8 PmALDP1-rev 5 -TTC CTG CTG TTT TTT G-3 (Pm ALDP1) PmARD-fwd 5 -TGT GTT GCA GGG AGT GGT TA-3 (Pm ARD1) PmARD-rev 5 -GCA TCA ACA TCA CC-3 (Pm ARD1) PmCPA1-fwd 5 -TAG GGA TTT GCT GGG ATC AG-3 (Pm CPA1) PmCPA1-rev 5 -TTT TGC CAT GCT CAG TTT CA-3 (Pm CPA1) PmDEP1-fwd 5 -TCA CAG AAT CTC TTG CTG AAG CA-3 (Pm DEP1) PmDEP1-rev 5 -ATC AAA GCA TAT CCA AAA ACG ACC GCT-3 (Pm DEP1) PmDEP1/2c-f 5 -GCA GGG GCT GTT ATT CAT AGT CAT GG-3 (Pm DEP1/2) PmDEP1/2c-r 5 -TTA TGA TAC ATT CAG CCT G-3 (Pm DEP1/2) PmDEP1/2-fwd1 5 -CCW CTB TTT WTG AAG GCD TAT-3 (Pm DEP1/2 degenerate primer) PmDEP1/2-rev1 5 -TAA TGA TAA CAT TCA GCC TG-3 (Pm DEP1/2 degenerate primer) PmDEP2-fwd 5 -GTG GAG TCT TTA ACA GAA TCG-3 (Pm DEP2) PmDEP2-rev 5 -AGA TCC TAC CCA AAG GCA ACA-3 (Pm DEP2) PmMTI1c-f 5 -ACC CAC CGC AAC ACT GGC AGT-3 (Pm MTI1) PmMTI1c-r 5 - TCG AAG GCT GGG TTC CAC AC-3 (Pm MTI1) PmMTI1-fwd 5 -GCT GTG ATT GTT GGA GCT GA-3 (Pm MTI1) PmMTI1-fwd2 5 - ACM CAT TGT AAT ACT GGM AG-3 (Pm MTI1 degenerate primer) PmMTI1-rev 5 -GCT GGG TTC CAC ACA GAA AT-3 (Pm MTI1) PmMTI1-rev3 5 - TCG AAK GCK GGG TTC CAB AC-3 (Pm MTI1 degenerate primer) PmMTK-fwd 5 -CAA CAA CGC AGA ACT CCA GA-3 (Pm MTK) PmMTK-rev 5 -CCG GAA TTT GAT GCA AGA CT-3 (Pm MTK) PmSAMDC1-fwd 5 -TGT AGA GAT TGC CGC TTC CT-3 (Pm SAMDC1) PmSAMDC1-rev 5 -CTG CAT GTG CCA AGT CTG TT-3 (Pm SAMDC1) PmSAMDC2-fwd 5 -TCC TCA TCC TCG CTC TCA CT-3 (Pm SAMDC2) PmSAMDC2-rev 5 -TGG GTT ACC TGG TTG AGA GG-3 (Pm SAMDC2) PmSPMS1-fwd 5 -CAT CAG ATC CTG TGG GTC CT-3 (Pm SPMS1) PmSPMS1-rev 5- GAC CTT CCG TTG AGC ATA GC-3 (Pm SPMS1) PmTUA-5 5 -CAT CTG CCG TAA ATC TCT TGA TAT-3 (Pm TUA2) PmTUA-3 5 -AGC AAC AGA AAG CTG CTC ATG GTA-3 (Pm TUA2) TOPO-1 5 -TCG GAT CCA CTA GTA ACG-3 (TOPO-Zero blunt II vector) TOPO GTG TGA TGG ATA TCT GC-3 (TOPO-Zero blunt II vector) Supplemental Table 2. Oligonucleotide primers used in this study. Primer names and sequences are listed in alphabetical order; gene targets are given in brackets. 8

9 Supplemental Data Set 1. Alignment (ClustalW; PHYLIP format) of the sequences used to calculate the phylogenetic tree shown in Figure 5. Two-letter abbreviations of the organisms (e.g. Av = Anabaena variabilis) and partial accession or MIPS numbers (Arabidopsis) are given at the top of the figure (shown as separate txt file). Supplemental Data Set 2. Alignment (ClustalW; PHYLIP format) of the sequences used to calculate the phylogenetic tree shown in Figure 7B. Sequences of the the N-terminal part (residues 1 to 248) of the Arabidopsis DEP1 protein, of related plant proteins and of characterized methylthioribulose-1-phosphate dehydratases from non-plant organisms were aligned. Two-letter abbreviations of the organisms (e.g. Ur = Uncinocarpus resii) and accession or MIPS numbers (Arabidopsis) are given at the top of the figure (shown as separate txt file). Supplemental Data Set 3. Alignment (ClustalW; PHYLIP format) of the sequences used to calculate the phylogenetic tree shown in Figure 7C. Sequences the C-terminal part (residues 249 to 507) of the Arabidopsis DEP1 protein, of related plant proteins and of characterized enolase-phosphatases from non-plant organisms were aligned. Two-letter abbreviations of the organisms (e.g. Vv = Vitis vinifera) and accession or MIPS numbers (Arabidopsis) are given at the top of the figure (shown as separate txt file). 9

Practical Bioinformatics

Practical Bioinformatics 5/2/2017 Dictionaries d i c t i o n a r y = { A : T, T : A, G : C, C : G } d i c t i o n a r y [ G ] d i c t i o n a r y [ N ] = N d i c t i o n a r y. h a s k e y ( C ) Dictionaries g e n e t i c C o

More information

SUPPORTING INFORMATION FOR. SEquence-Enabled Reassembly of β-lactamase (SEER-LAC): a Sensitive Method for the Detection of Double-Stranded DNA

SUPPORTING INFORMATION FOR. SEquence-Enabled Reassembly of β-lactamase (SEER-LAC): a Sensitive Method for the Detection of Double-Stranded DNA SUPPORTING INFORMATION FOR SEquence-Enabled Reassembly of β-lactamase (SEER-LAC): a Sensitive Method for the Detection of Double-Stranded DNA Aik T. Ooi, Cliff I. Stains, Indraneel Ghosh *, David J. Segal

More information

High throughput near infrared screening discovers DNA-templated silver clusters with peak fluorescence beyond 950 nm

High throughput near infrared screening discovers DNA-templated silver clusters with peak fluorescence beyond 950 nm Electronic Supplementary Material (ESI) for Nanoscale. This journal is The Royal Society of Chemistry 2018 High throughput near infrared screening discovers DNA-templated silver clusters with peak fluorescence

More information

SSR ( ) Vol. 48 No ( Microsatellite marker) ( Simple sequence repeat,ssr),

SSR ( ) Vol. 48 No ( Microsatellite marker) ( Simple sequence repeat,ssr), 48 3 () Vol. 48 No. 3 2009 5 Journal of Xiamen University (Nat ural Science) May 2009 SSR,,,, 3 (, 361005) : SSR. 21 516,410. 60 %96. 7 %. (),(Between2groups linkage method),.,, 11 (),. 12,. (, ), : 0.

More information

Advanced topics in bioinformatics

Advanced topics in bioinformatics Feinberg Graduate School of the Weizmann Institute of Science Advanced topics in bioinformatics Shmuel Pietrokovski & Eitan Rubin Spring 2003 Course WWW site: http://bioinformatics.weizmann.ac.il/courses/atib

More information

Clay Carter. Department of Biology. QuickTime and a TIFF (Uncompressed) decompressor are needed to see this picture.

Clay Carter. Department of Biology. QuickTime and a TIFF (Uncompressed) decompressor are needed to see this picture. QuickTime and a TIFF (Uncompressed) decompressor are needed to see this picture. Clay Carter Department of Biology QuickTime and a TIFF (LZW) decompressor are needed to see this picture. Ornamental tobacco

More information

SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS. Prokaryotes and Eukaryotes. DNA and RNA

SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS. Prokaryotes and Eukaryotes. DNA and RNA SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS 1 Prokaryotes and Eukaryotes 2 DNA and RNA 3 4 Double helix structure Codons Codons are triplets of bases from the RNA sequence. Each triplet defines an amino-acid.

More information

Number-controlled spatial arrangement of gold nanoparticles with

Number-controlled spatial arrangement of gold nanoparticles with Electronic Supplementary Material (ESI) for RSC Advances. This journal is The Royal Society of Chemistry 2016 Number-controlled spatial arrangement of gold nanoparticles with DNA dendrimers Ping Chen,*

More information

Characterization of Pathogenic Genes through Condensed Matrix Method, Case Study through Bacterial Zeta Toxin

Characterization of Pathogenic Genes through Condensed Matrix Method, Case Study through Bacterial Zeta Toxin International Journal of Genetic Engineering and Biotechnology. ISSN 0974-3073 Volume 2, Number 1 (2011), pp. 109-114 International Research Publication House http://www.irphouse.com Characterization of

More information

Crick s early Hypothesis Revisited

Crick s early Hypothesis Revisited Crick s early Hypothesis Revisited Or The Existence of a Universal Coding Frame Ryan Rossi, Jean-Louis Lassez and Axel Bernal UPenn Center for Bioinformatics BIOINFORMATICS The application of computer

More information

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1

Nature Structural & Molecular Biology: doi: /nsmb Supplementary Figure 1 Supplementary Figure 1 Zn 2+ -binding sites in USP18. (a) The two molecules of USP18 present in the asymmetric unit are shown. Chain A is shown in blue, chain B in green. Bound Zn 2+ ions are shown as

More information

Electronic supplementary material

Electronic supplementary material Applied Microbiology and Biotechnology Electronic supplementary material A family of AA9 lytic polysaccharide monooxygenases in Aspergillus nidulans is differentially regulated by multiple substrates and

More information

SUPPLEMENTARY DATA - 1 -

SUPPLEMENTARY DATA - 1 - - 1 - SUPPLEMENTARY DATA Construction of B. subtilis rnpb complementation plasmids For complementation, the B. subtilis rnpb wild-type gene (rnpbwt) under control of its native rnpb promoter and terminator

More information

Table S1. Primers and PCR conditions used in this paper Primers Sequence (5 3 ) Thermal conditions Reference Rhizobacteria 27F 1492R

Table S1. Primers and PCR conditions used in this paper Primers Sequence (5 3 ) Thermal conditions Reference Rhizobacteria 27F 1492R Table S1. Primers and PCR conditions used in this paper Primers Sequence (5 3 ) Thermal conditions Reference Rhizobacteria 27F 1492R AAC MGG ATT AGA TAC CCK G GGY TAC CTT GTT ACG ACT T Detection of Candidatus

More information

Supplementary Information for

Supplementary Information for Supplementary Information for Evolutionary conservation of codon optimality reveals hidden signatures of co-translational folding Sebastian Pechmann & Judith Frydman Department of Biology and BioX, Stanford

More information

NSCI Basic Properties of Life and The Biochemistry of Life on Earth

NSCI Basic Properties of Life and The Biochemistry of Life on Earth NSCI 314 LIFE IN THE COSMOS 4 Basic Properties of Life and The Biochemistry of Life on Earth Dr. Karen Kolehmainen Department of Physics CSUSB http://physics.csusb.edu/~karen/ WHAT IS LIFE? HARD TO DEFINE,

More information

Regulatory Sequence Analysis. Sequence models (Bernoulli and Markov models)

Regulatory Sequence Analysis. Sequence models (Bernoulli and Markov models) Regulatory Sequence Analysis Sequence models (Bernoulli and Markov models) 1 Why do we need random models? Any pattern discovery relies on an underlying model to estimate the random expectation. This model

More information

Supplemental Table 1. Primers used for cloning and PCR amplification in this study

Supplemental Table 1. Primers used for cloning and PCR amplification in this study Supplemental Table 1. Primers used for cloning and PCR amplification in this study Target Gene Primer sequence NATA1 (At2g393) forward GGG GAC AAG TTT GTA CAA AAA AGC AGG CTT CAT GGC GCC TCC AAC CGC AGC

More information

Supporting Information

Supporting Information Supporting Information T. Pellegrino 1,2,3,#, R. A. Sperling 1,#, A. P. Alivisatos 2, W. J. Parak 1,2,* 1 Center for Nanoscience, Ludwig Maximilians Universität München, München, Germany 2 Department of

More information

Supplemental Figure 1.

Supplemental Figure 1. A wt spoiiiaδ spoiiiahδ bofaδ B C D E spoiiiaδ, bofaδ Supplemental Figure 1. GFP-SpoIVFA is more mislocalized in the absence of both BofA and SpoIIIAH. Sporulation was induced by resuspension in wild-type

More information

TM1 TM2 TM3 TM4 TM5 TM6 TM bp

TM1 TM2 TM3 TM4 TM5 TM6 TM bp a 467 bp 1 482 2 93 3 321 4 7 281 6 21 7 66 8 176 19 12 13 212 113 16 8 b ATG TCA GGA CAT GTA ATG GAG GAA TGT GTA GTT CAC GGT ACG TTA GCG GCA GTA TTG CGT TTA ATG GGC GTA GTG M S G H V M E E C V V H G T

More information

Building a Multifunctional Aptamer-Based DNA Nanoassembly for Targeted Cancer Therapy

Building a Multifunctional Aptamer-Based DNA Nanoassembly for Targeted Cancer Therapy Supporting Information Building a Multifunctional Aptamer-Based DNA Nanoassembly for Targeted Cancer Therapy Cuichen Wu,, Da Han,, Tao Chen,, Lu Peng, Guizhi Zhu,, Mingxu You,, Liping Qiu,, Kwame Sefah,

More information

Supplementary Information

Supplementary Information Electronic Supplementary Material (ESI) for RSC Advances. This journal is The Royal Society of Chemistry 2014 Directed self-assembly of genomic sequences into monomeric and polymeric branched DNA structures

More information

Modelling and Analysis in Bioinformatics. Lecture 1: Genomic k-mer Statistics

Modelling and Analysis in Bioinformatics. Lecture 1: Genomic k-mer Statistics 582746 Modelling and Analysis in Bioinformatics Lecture 1: Genomic k-mer Statistics Juha Kärkkäinen 06.09.2016 Outline Course introduction Genomic k-mers 1-Mers 2-Mers 3-Mers k-mers for Larger k Outline

More information

6.047 / Computational Biology: Genomes, Networks, Evolution Fall 2008

6.047 / Computational Biology: Genomes, Networks, Evolution Fall 2008 MIT OpenCourseWare http://ocw.mit.edu 6.047 / 6.878 Computational Biology: Genomes, Networks, Evolution Fall 2008 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms.

More information

3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies

3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies Richard Owen (1848) introduced the term Homology to refer to structural similarities among organisms. To Owen, these similarities indicated that organisms were created following a common plan or archetype.

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION DOI:.38/NCHEM.246 Optimizing the specificity of nucleic acid hyridization David Yu Zhang, Sherry Xi Chen, and Peng Yin. Analytic framework and proe design 3.. Concentration-adjusted

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION DOI:.8/NCHEM. Conditionally Fluorescent Molecular Probes for Detecting Single Base Changes in Double-stranded DNA Sherry Xi Chen, David Yu Zhang, Georg Seelig. Analytic framework and probe design.. Design

More information

Supporting Information for. Initial Biochemical and Functional Evaluation of Murine Calprotectin Reveals Ca(II)-

Supporting Information for. Initial Biochemical and Functional Evaluation of Murine Calprotectin Reveals Ca(II)- Supporting Information for Initial Biochemical and Functional Evaluation of Murine Calprotectin Reveals Ca(II)- Dependence and Its Ability to Chelate Multiple Nutrient Transition Metal Ions Rose C. Hadley,

More information

The role of the FliD C-terminal domain in pentamer formation and

The role of the FliD C-terminal domain in pentamer formation and The role of the FliD C-terminal domain in pentamer formation and interaction with FliT Hee Jung Kim 1,2,*, Woongjae Yoo 3,*, Kyeong Sik Jin 4, Sangryeol Ryu 3,5 & Hyung Ho Lee 1, 1 Department of Chemistry,

More information

Evolvable Neural Networks for Time Series Prediction with Adaptive Learning Interval

Evolvable Neural Networks for Time Series Prediction with Adaptive Learning Interval Evolvable Neural Networs for Time Series Prediction with Adaptive Learning Interval Dong-Woo Lee *, Seong G. Kong *, and Kwee-Bo Sim ** *Department of Electrical and Computer Engineering, The University

More information

Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi

Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Supporting Information http://www.genetics.org/cgi/content/full/genetics.110.116228/dc1 Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Ben

More information

The Trigram and other Fundamental Philosophies

The Trigram and other Fundamental Philosophies The Trigram and other Fundamental Philosophies by Weimin Kwauk July 2012 The following offers a minimal introduction to the trigram and other Chinese fundamental philosophies. A trigram consists of three

More information

Protein Threading. Combinatorial optimization approach. Stefan Balev.

Protein Threading. Combinatorial optimization approach. Stefan Balev. Protein Threading Combinatorial optimization approach Stefan Balev Stefan.Balev@univ-lehavre.fr Laboratoire d informatique du Havre Université du Havre Stefan Balev Cours DEA 30/01/2004 p.1/42 Outline

More information

Re- engineering cellular physiology by rewiring high- level global regulatory genes

Re- engineering cellular physiology by rewiring high- level global regulatory genes Re- engineering cellular physiology by rewiring high- level global regulatory genes Stephen Fitzgerald 1,2,, Shane C Dillon 1, Tzu- Chiao Chao 2, Heather L Wiencko 3, Karsten Hokamp 3, Andrew DS Cameron

More information

evoglow - express N kit distributed by Cat.#: FP product information broad host range vectors - gram negative bacteria

evoglow - express N kit distributed by Cat.#: FP product information broad host range vectors - gram negative bacteria evoglow - express N kit broad host range vectors - gram negative bacteria product information distributed by Cat.#: FP-21020 Content: Product Overview... 3 evoglow express N -kit... 3 The evoglow -Fluorescent

More information

evoglow - express N kit Cat. No.: product information broad host range vectors - gram negative bacteria

evoglow - express N kit Cat. No.: product information broad host range vectors - gram negative bacteria evoglow - express N kit broad host range vectors - gram negative bacteria product information Cat. No.: 2.1.020 evocatal GmbH 2 Content: Product Overview... 4 evoglow express N kit... 4 The evoglow Fluorescent

More information

Codon Distribution in Error-Detecting Circular Codes

Codon Distribution in Error-Detecting Circular Codes life Article Codon Distribution in Error-Detecting Circular Codes Elena Fimmel, * and Lutz Strüngmann Institute for Mathematical Biology, Faculty of Computer Science, Mannheim University of Applied Sciences,

More information

Why do more divergent sequences produce smaller nonsynonymous/synonymous

Why do more divergent sequences produce smaller nonsynonymous/synonymous Genetics: Early Online, published on June 21, 2013 as 10.1534/genetics.113.152025 Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?

More information

AtTIL-P91V. AtTIL-P92V. AtTIL-P95V. AtTIL-P98V YFP-HPR

AtTIL-P91V. AtTIL-P92V. AtTIL-P95V. AtTIL-P98V YFP-HPR Online Resource 1. Primers used to generate constructs AtTIL-P91V, AtTIL-P92V, AtTIL-P95V and AtTIL-P98V and YFP(HPR) using overlapping PCR. pentr/d- TOPO-AtTIL was used as template to generate the constructs

More information

Near-instant surface-selective fluorogenic protein quantification using sulfonated

Near-instant surface-selective fluorogenic protein quantification using sulfonated Electronic Supplementary Material (ESI) for rganic & Biomolecular Chemistry. This journal is The Royal Society of Chemistry 2014 Supplemental nline Materials for ear-instant surface-selective fluorogenic

More information

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila

Evolutionary dynamics of abundant stop codon readthrough in Anopheles and Drosophila biorxiv preprint first posted online May. 3, 2016; doi: http://dx.doi.org/10.1101/051557. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. All rights reserved.

More information

The 3 Genomic Numbers Discovery: How Our Genome Single-Stranded DNA Sequence Is Self-Designed as a Numerical Whole

The 3 Genomic Numbers Discovery: How Our Genome Single-Stranded DNA Sequence Is Self-Designed as a Numerical Whole Applied Mathematics, 2013, 4, 37-53 http://dx.doi.org/10.4236/am.2013.410a2004 Published Online October 2013 (http://www.scirp.org/journal/am) The 3 Genomic Numbers Discovery: How Our Genome Single-Stranded

More information

ChemiScreen CaS Calcium Sensor Receptor Stable Cell Line

ChemiScreen CaS Calcium Sensor Receptor Stable Cell Line PRODUCT DATASHEET ChemiScreen CaS Calcium Sensor Receptor Stable Cell Line CATALOG NUMBER: HTS137C CONTENTS: 2 vials of mycoplasma-free cells, 1 ml per vial. STORAGE: Vials are to be stored in liquid N

More information

part 3: analysis of natural selection pressure

part 3: analysis of natural selection pressure part 3: analysis of natural selection pressure markov models are good phenomenological codon models do have many benefits: o principled framework for statistical inference o avoiding ad hoc corrections

More information

Supplementary Information

Supplementary Information Supplementary Information Arginine-rhamnosylation as new strategy to activate translation elongation factor P Jürgen Lassak 1,2,*, Eva Keilhauer 3, Max Fürst 1,2, Kristin Wuichet 4, Julia Gödeke 5, Agata

More information

Timing molecular motion and production with a synthetic transcriptional clock

Timing molecular motion and production with a synthetic transcriptional clock Timing molecular motion and production with a synthetic transcriptional clock Elisa Franco,1, Eike Friedrichs 2, Jongmin Kim 3, Ralf Jungmann 2, Richard Murray 1, Erik Winfree 3,4,5, and Friedrich C. Simmel

More information

Introduction to Molecular Phylogeny

Introduction to Molecular Phylogeny Introduction to Molecular Phylogeny Starting point: a set of homologous, aligned DNA or protein sequences Result of the process: a tree describing evolutionary relationships between studied sequences =

More information

Pathways and Controls of N 2 O Production in Nitritation Anammox Biomass

Pathways and Controls of N 2 O Production in Nitritation Anammox Biomass Supporting Information for Pathways and Controls of N 2 O Production in Nitritation Anammox Biomass Chun Ma, Marlene Mark Jensen, Barth F. Smets, Bo Thamdrup, Department of Biology, University of Southern

More information

Encoding of Amino Acids and Proteins from a Communications and Information Theoretic Perspective

Encoding of Amino Acids and Proteins from a Communications and Information Theoretic Perspective Jacobs University Bremen Encoding of Amino Acids and Proteins from a Communications and Information Theoretic Perspective Semester Project II By: Dawit Nigatu Supervisor: Prof. Dr. Werner Henkel Transmission

More information

Chain-like assembly of gold nanoparticles on artificial DNA templates via Click Chemistry

Chain-like assembly of gold nanoparticles on artificial DNA templates via Click Chemistry Electronic Supporting Information: Chain-like assembly of gold nanoparticles on artificial DNA templates via Click Chemistry Monika Fischler, Alla Sologubenko, Joachim Mayer, Guido Clever, Glenn Burley,

More information

Biosynthesis of Bacterial Glycogen: Primary Structure of Salmonella typhimurium ADPglucose Synthetase as Deduced from the

Biosynthesis of Bacterial Glycogen: Primary Structure of Salmonella typhimurium ADPglucose Synthetase as Deduced from the JOURNAL OF BACTERIOLOGY, Sept. 1987, p. 4355-4360 0021-9193/87/094355-06$02.00/0 Copyright X) 1987, American Society for Microbiology Vol. 169, No. 9 Biosynthesis of Bacterial Glycogen: Primary Structure

More information

Insects act as vectors for a number of important diseases of

Insects act as vectors for a number of important diseases of pubs.acs.org/synthbio Novel Synthetic Medea Selfish Genetic Elements Drive Population Replacement in Drosophila; a Theoretical Exploration of Medea- Dependent Population Suppression Omar S. Abari,,# Chun-Hong

More information

Supplemental Figure 1. Phenotype of ProRGA:RGAd17 plants under long day

Supplemental Figure 1. Phenotype of ProRGA:RGAd17 plants under long day Supplemental Figure 1. Phenotype of ProRGA:RGAd17 plants under long day conditions. Photo was taken when the wild type plant started to bolt. Scale bar represents 1 cm. Supplemental Figure 2. Flowering

More information

Supporting Information. An Electric Single-Molecule Hybridisation Detector for short DNA Fragments

Supporting Information. An Electric Single-Molecule Hybridisation Detector for short DNA Fragments Supporting Information An Electric Single-Molecule Hybridisation Detector for short DNA Fragments A.Y.Y. Loh, 1 C.H. Burgess, 2 D.A. Tanase, 1 G. Ferrari, 3 M.A. Maclachlan, 2 A.E.G. Cass, 1 T. Albrecht*

More information

FliZ Is a Posttranslational Activator of FlhD 4 C 2 -Dependent Flagellar Gene Expression

FliZ Is a Posttranslational Activator of FlhD 4 C 2 -Dependent Flagellar Gene Expression JOURNAL OF BACTERIOLOGY, July 2008, p. 4979 4988 Vol. 190, No. 14 0021-9193/08/$08.00 0 doi:10.1128/jb.01996-07 Copyright 2008, American Society for Microbiology. All Rights Reserved. FliZ Is a Posttranslational

More information

It is the author's version of the article accepted for publication in the journal "Biosystems" on 03/10/2015.

It is the author's version of the article accepted for publication in the journal Biosystems on 03/10/2015. It is the author's version of the article accepted for publication in the journal "Biosystems" on 03/10/2015. The system-resonance approach in modeling genetic structures Sergey V. Petoukhov Institute

More information

THE MATHEMATICAL STRUCTURE OF THE GENETIC CODE: A TOOL FOR INQUIRING ON THE ORIGIN OF LIFE

THE MATHEMATICAL STRUCTURE OF THE GENETIC CODE: A TOOL FOR INQUIRING ON THE ORIGIN OF LIFE STATISTICA, anno LXIX, n. 2 3, 2009 THE MATHEMATICAL STRUCTURE OF THE GENETIC CODE: A TOOL FOR INQUIRING ON THE ORIGIN OF LIFE Diego Luis Gonzalez CNR-IMM, Bologna Section, Via Gobetti 101, I-40129, Bologna,

More information

Symmetry Studies. Marlos A. G. Viana

Symmetry Studies. Marlos A. G. Viana Symmetry Studies Marlos A. G. Viana aaa aac aag aat caa cac cag cat aca acc acg act cca ccc ccg cct aga agc agg agt cga cgc cgg cgt ata atc atg att cta ctc ctg ctt gaa gac gag gat taa tac tag tat gca gcc

More information

part 4: phenomenological load and biological inference. phenomenological load review types of models. Gαβ = 8π Tαβ. Newton.

part 4: phenomenological load and biological inference. phenomenological load review types of models. Gαβ = 8π Tαβ. Newton. 2017-07-29 part 4: and biological inference review types of models phenomenological Newton F= Gm1m2 r2 mechanistic Einstein Gαβ = 8π Tαβ 1 molecular evolution is process and pattern process pattern MutSel

More information

Identification of a Locus Involved in the Utilization of Iron by Haemophilus influenzae

Identification of a Locus Involved in the Utilization of Iron by Haemophilus influenzae INFECrION AND IMMUNITY, OCt. 1994, p. 4515-4525 0019-9567/94/$04.00+0 Copyright 1994, American Society for Microbiology Vol. 62, No. 10 Identification of a Locus Involved in the Utilization of Iron by

More information

Glucosylglycerate phosphorylase, a novel enzyme specificity involved in compatible solute metabolism

Glucosylglycerate phosphorylase, a novel enzyme specificity involved in compatible solute metabolism Supplementary Information for Glucosylglycerate phosphorylase, a novel enzyme specificity involved in compatible solute metabolism Jorick Franceus, Denise Pinel, Tom Desmet Corresponding author: Tom Desmet,

More information

Evidence for RNA editing in mitochondria of all major groups of

Evidence for RNA editing in mitochondria of all major groups of Proc. Natl. Acad. Sci. USA Vol. 91, pp. 629-633, January 1994 Plant Biology Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta RUDOLF HIESEL, BRUNO COMBETTES*,

More information

Supplemental Figure 1. Differences in amino acid composition between the paralogous copies Os MADS17 and Os MADS6.

Supplemental Figure 1. Differences in amino acid composition between the paralogous copies Os MADS17 and Os MADS6. Supplemental Data. Reinheimer and Kellogg (2009). Evolution of AGL6-like MADSbox genes in grasses (Poaceae): ovule expression is ancient and palea expression is new Supplemental Figure 1. Differences in

More information

Supplementary Figure 1. Schematic of split-merger microfluidic device used to add transposase to template drops for fragmentation.

Supplementary Figure 1. Schematic of split-merger microfluidic device used to add transposase to template drops for fragmentation. Supplementary Figure 1. Schematic of split-merger microfluidic device used to add transposase to template drops for fragmentation. Inlets are labelled in blue, outlets are labelled in red, and static channels

More information

ydci GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC

ydci GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC Table S1. DNA primers used in this study. Name ydci P1ydcIkd3 Sequence GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC Kd3ydcIp2 lacz fusion YdcIendP1 YdcItrgP2 GAC AGC

More information

Using algebraic geometry for phylogenetic reconstruction

Using algebraic geometry for phylogenetic reconstruction Using algebraic geometry for phylogenetic reconstruction Marta Casanellas i Rius (joint work with Jesús Fernández-Sánchez) Departament de Matemàtica Aplicada I Universitat Politècnica de Catalunya IMA

More information

Supplemental data. Vos et al. (2008). The plant TPX2 protein regulates pro-spindle assembly before nuclear envelope breakdown.

Supplemental data. Vos et al. (2008). The plant TPX2 protein regulates pro-spindle assembly before nuclear envelope breakdown. Supplemental data. Vos et al. (2008). The plant TPX2 protein regulates pro-spindle assembly before nuclear envelope breakdown. SUPPLEMENTAL FIGURE 1 ONLINE Xenopus laevis! Xenopus tropicalis! Danio rerio!

More information

DNA sequence analysis of the imp UV protection and mutation operon of the plasmid TP110: identification of a third gene

DNA sequence analysis of the imp UV protection and mutation operon of the plasmid TP110: identification of a third gene QD) 1990 Oxford University Press Nucleic Acids Research, Vol. 18, No. 17 5045 DNA sequence analysis of the imp UV protection and mutation operon of the plasmid TP110: identification of a third gene David

More information

Supplementary information. Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization.

Supplementary information. Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization. Supplementary information Porphyrin-Assisted Docking of a Thermophage Portal Protein into Lipid Bilayers: Nanopore Engineering and Characterization. Benjamin Cressiot #, Sandra J. Greive #, Wei Si ^#,

More information

How DNA barcoding can be more effective in microalgae. identification: a case of cryptic diversity revelation in Scenedesmus

How DNA barcoding can be more effective in microalgae. identification: a case of cryptic diversity revelation in Scenedesmus How DNA barcoding can be more effective in microalgae identification: a case of cryptic diversity revelation in Scenedesmus (Chlorophyceae) Shanmei Zou, Cong Fei, Chun Wang, Zhan Gao, Yachao Bao, Meilin

More information

Characterization of Multiple-Antimicrobial-Resistant Salmonella Serovars Isolated from Retail Meats

Characterization of Multiple-Antimicrobial-Resistant Salmonella Serovars Isolated from Retail Meats APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Jan. 2004, p. 1 7 Vol. 70, No. 1 0099-2240/04/$08.00 0 DOI: 10.1128/AEM.70.1.1 7.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved. Characterization

More information

Motif Finding Algorithms. Sudarsan Padhy IIIT Bhubaneswar

Motif Finding Algorithms. Sudarsan Padhy IIIT Bhubaneswar Motif Finding Algorithms Sudarsan Padhy IIIT Bhubaneswar Outline Gene Regulation Regulatory Motifs The Motif Finding Problem Brute Force Motif Finding Consensus and Pattern Branching: Greedy Motif Search

More information

codon substitution models and the analysis of natural selection pressure

codon substitution models and the analysis of natural selection pressure 2015-07-20 codon substitution models and the analysis of natural selection pressure Joseph P. Bielawski Department of Biology Department of Mathematics & Statistics Dalhousie University introduction morphological

More information

Supporting Information

Supporting Information Supporting Information Mixed DNA-functionalized Nanoparticle Probes for Surface Enhanced Raman Scattering-based Multiplex DNA Detection Zhiliang Zhang, a, b Yongqiang Wen,* a Ying Ma, a Jia Luo, a Lei

More information

Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber.

Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber. Supplementary information: Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber. Ramon Rosselló-Mora 1, Marianna Lucio², Arantxa Peña 3, Jocelyn Brito-Echeverría

More information

NEW DNA CYCLIC CODES OVER RINGS

NEW DNA CYCLIC CODES OVER RINGS NEW DNA CYCLIC CODES OVER RINGS NABIL BENNENNI, KENZA GUENDA AND SIHEM MESNAGER arxiv:1505.06263v1 [cs.it] 23 May 2015 Abstract. This paper is dealing with DNA cyclic codes which play an important role

More information

Codon-model based inference of selection pressure. (a very brief review prior to the PAML lab)

Codon-model based inference of selection pressure. (a very brief review prior to the PAML lab) Codon-model based inference of selection pressure (a very brief review prior to the PAML lab) an index of selection pressure rate ratio mode example dn/ds < 1 purifying (negative) selection histones dn/ds

More information

Chemical Biology on Genomic DNA: minimizing PCR bias. Electronic Supplementary Information (ESI) for Chemical Communications

Chemical Biology on Genomic DNA: minimizing PCR bias. Electronic Supplementary Information (ESI) for Chemical Communications Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2014 Chemical Biology on Genomic DA: minimizing PCR bias Gordon R. McInroy, Eun-Ang Raiber, & Shankar

More information

supplementary information

supplementary information DOI: 10.1038/ncb1825 Figure S1 Venus::UNC-6 expression prior to and during AC invasion. (a-c) Nomarski images overlayed with Venus::UNC-6 ( SP) expression shown in yellow (left), and Venus::UNC-6 ( SP)

More information

Electronic Supporting Information for

Electronic Supporting Information for Electronic Supplementary Material (ESI) for Chemical Science. This journal is The Royal Society of Chemistry 2018 Electronic Supporting Information for A DNA-conjugated small molecule catalyst enzyme mimic

More information

A functional homologue of goosecoid in Drosophila

A functional homologue of goosecoid in Drosophila Development 122, 1641-1650 (1996) Printed in Great Britain The Company of Biologists Limited 1996 DEV1069 1641 A functional homologue of goosecoid in Drosophila Anne Goriely 1, Michael Stella 1, Catherine

More information

Evidence for Evolution: Change Over Time (Make Up Assignment)

Evidence for Evolution: Change Over Time (Make Up Assignment) Lesson 7.2 Evidence for Evolution: Change Over Time (Make Up Assignment) Name Date Period Key Terms Adaptive radiation Molecular Record Vestigial organ Homologous structure Strata Divergent evolution Evolution

More information

HADAMARD MATRICES AND QUINT MATRICES IN MATRIX PRESENTATIONS OF MOLECULAR GENETIC SYSTEMS

HADAMARD MATRICES AND QUINT MATRICES IN MATRIX PRESENTATIONS OF MOLECULAR GENETIC SYSTEMS Symmetry: Culture and Science Vol. 16, No. 3, 247-266, 2005 HADAMARD MATRICES AND QUINT MATRICES IN MATRIX PRESENTATIONS OF MOLECULAR GENETIC SYSTEMS Sergey V. Petoukhov Address: Department of Biomechanics,

More information

Dissertation. presented by: Hung-wei Sung Diploma: Master of Life Science born intaipei, Taiwan Oral examination:

Dissertation. presented by: Hung-wei Sung Diploma: Master of Life Science born intaipei, Taiwan Oral examination: Dissertation submitted to the Combined Faculties for the Natural Sciences and for Mathematics of the Ruperto-Carola University of Heidelberg, Germany for the degree of Doctor of Natural Sciences presented

More information

160, and 220 bases, respectively, shorter than pbr322/hag93. (data not shown). The DNA sequence of approximately 100 bases of each

160, and 220 bases, respectively, shorter than pbr322/hag93. (data not shown). The DNA sequence of approximately 100 bases of each JOURNAL OF BACTEROLOGY, JUlY 1988, p. 3305-3309 0021-9193/88/073305-05$02.00/0 Copyright 1988, American Society for Microbiology Vol. 170, No. 7 Construction of a Minimum-Size Functional Flagellin of Escherichia

More information

Table S1. DNA oligonucleo3des used for 3D pol mutagenesis. Fingers Domain Entry Channel. Fidelity

Table S1. DNA oligonucleo3des used for 3D pol mutagenesis. Fingers Domain Entry Channel. Fidelity Table S1. DNA oligonucleo3des used for 3D pol mutagenesis. Fingers Domain Entry Channel Fidelity Charged Residues Interac9ng with Template and Product RNAs Thumb Domain 3D pol Mutations Parental codon

More information

Diversity of Chlamydia trachomatis Major Outer Membrane

Diversity of Chlamydia trachomatis Major Outer Membrane JOURNAL OF ACTERIOLOGY, Sept. 1987, p. 3879-3885 Vol. 169, No. 9 0021-9193/87/093879-07$02.00/0 Copyright 1987, American Society for Microbiology Diversity of Chlamydia trachomatis Major Outer Membrane

More information

Gene manipulation in Bacillus thuringiensis : Biopesticide Development

Gene manipulation in Bacillus thuringiensis : Biopesticide Development Gene manipulation in Bacillus thuringiensis : Biopesticide Development For safer Environment, Agriculture and Food! Samir JAOUA Univ. of Qatar, CAS, Dept of Biol. & Environ. Sc / Centre of Biotechno. Sfax,

More information

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences Finding Regulatory Motifs in DNA Sequences Outline Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median

More information

Evolutionary Analysis of Viral Genomes

Evolutionary Analysis of Viral Genomes University of Oxford, Department of Zoology Evolutionary Biology Group Department of Zoology University of Oxford South Parks Road Oxford OX1 3PS, U.K. Fax: +44 1865 271249 Evolutionary Analysis of Viral

More information

Appendix B Protein-Signaling Networks from Single-cell Fluctuations and Information Theory Profiling B.1. Introduction

Appendix B Protein-Signaling Networks from Single-cell Fluctuations and Information Theory Profiling B.1. Introduction 92 Appendix B Protein-Signaling Networks from Single-cell Fluctuations and Information Theory Profiling B.1. Introduction Protein-signaling pathways play important roles in tissue processes ranging from

More information

Lecture IV A. Shannon s theory of noisy channels and molecular codes

Lecture IV A. Shannon s theory of noisy channels and molecular codes Lecture IV A Shannon s theory of noisy channels and molecular codes Noisy molecular codes: Rate-Distortion theory S Mapping M Channel/Code = mapping between two molecular spaces. Two functionals determine

More information

The Cell Cycle & Cell Division. Cell Function Cell Cycle. What does the cell do = cell physiology:

The Cell Cycle & Cell Division. Cell Function Cell Cycle. What does the cell do = cell physiology: Cell Function 2404 What does the cell do = cell physiology: 1. Cell Cycle & Cell Division 2. Membrane Transport 3. Secretion 4. Membrane Potential 5. Metabolism 6. Cellular Interactions 7. Cellular Control:

More information

Supporting Material. Protein Signaling Networks from Single Cell Fluctuations and Information Theory Profiling

Supporting Material. Protein Signaling Networks from Single Cell Fluctuations and Information Theory Profiling Supporting Material Protein Signaling Networks from Single Cell Fluctuations and Information Theory Profiling Young Shik Shin, Δ F. Remacle, ǁ Δ Rong Fan, Kiwook Hwang, Wei Wei, Habib Ahmad, R. D. Levine

More information

evoglow yeast kit distributed by product information Cat.#: FP-21040

evoglow yeast kit distributed by product information Cat.#: FP-21040 evoglow yeast kit product information distributed by Cat.#: FP-21040 Flavin-mononucleotide-based Fluorescent Protein (FbFP) evoglow basic kit Cat.# FP-21010 Quantity 20 µg each General Information Fluorescent

More information

Aoife McLysaght Dept. of Genetics Trinity College Dublin

Aoife McLysaght Dept. of Genetics Trinity College Dublin Aoife McLysaght Dept. of Genetics Trinity College Dublin Evolution of genome arrangement Evolution of genome content. Evolution of genome arrangement Gene order changes Inversions, translocations Evolution

More information

evoglow basic kit product information

evoglow basic kit product information evoglow basic kit product information Cat. No.: 2.1.010 Flavin-mononucleotide-based Fluorescent Protein (FbFP) evoglow basic kit Catalog No. evo-2.1.010 Quantity 20 µg each General Information Fluorescent

More information

Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family

Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family DNA Research 13, 205 228 (2006) doi:10.1093/dnares/dsl013 Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family

More information

Isolation of the hemf Operon Containing the Gene for the Escherichia coli Aerobic Coproporphyrinogen III Oxidase by

Isolation of the hemf Operon Containing the Gene for the Escherichia coli Aerobic Coproporphyrinogen III Oxidase by JOURNAL OF BACrERIOLOGY, Feb. 1994, p. 673-680 0021-9193/94/$04.00+0 Copyright X) 1994, American Society for Microbiology Vol. 176, No. 3 Isolation of the hemf Operon Containing the Gene for the Escherichia

More information