I for morphological change is a widely recognized need in contemporary

Size: px
Start display at page:

Download "I for morphological change is a widely recognized need in contemporary"

Transcription

1 Copyright by the Genetics Society of America GENETICS OF MANDIBLE FORM IN THE MOUSE WILLIAM R. ATCHLEY, A. ALISON PLUMMER AND BRUCE RISKA Laboratory of Genetics, University of Wisconsin, Madison, Wisconsin Manuscript received March 11, 1985 Revised copy accepted July 1, 1985 ABSTRACT The underlying determination of phenotypic variability and covariability is described for 14 traits that define the morphological size and shape of the mature mouse mandible. Variability is partitioned into components due to direct additive and dominance genetic effects, indirect maternal additive genetic effects, genetic covariance between direct additive and indirect maternal additive effects and common and residual environmental effects. Multivariate analyses of the dimensionality of genetic variability indicate several complex and independent genetic components underlie the morphological form of the mandible. The multidimensional nature of the genetic components suggests a complex picture with regard to the consequences of selection on mandibular form. NTEGRATION of development and evolution into a comprehensive theory I for morphological change is a widely recognized need in contemporary biology (BONNER 1982; RAFF and KAUFMANN 1982; GOODWIN, HOLDER and WYLIE 1983; LANDE 1983; CHEVERUD, RUTLEDGE and ATCHLEY 1983; ATCH- LEY 1984; ATCHLEY et al. 1984b). However, this integration has proven elusive because, although there is a clear and highly articulated theory of evolution, a comparable theory for development does not exist (BONNER 1982; MAYNARD SMITH 1983). Lack of an integrated theory stems partially from the inadequacy of existing models to explain developmental and morphological variability. However, resolution of important evolutionary questions about adaptive strategies, response to selection, rates of morphological divergence, evolutionary stasis or phylogenetic reconstruction often depends on a critical understanding of the underlying causes of variability in morphological structures. The final form (size and shape) of complex morphological structures, such as the mammalian cranium and mandible, results from integration of growth and morphogenesis in individual components during ontogeny. Such morphogenetic integration is potentially highly intricate because the individual components of a given structure often have different embryonic origins, may be under the influence of different controlling factors and, as a result, may develop at different rates (MOORE and LAVELLE 1974; MOORE 1981; HALL 1978; SLAVKIN 1979). Initiation, termination, rate and localization of the developmental processes underlying growth and morphogenesis are under control of gene loci whose Genetics 111: November, 1985.

2 556 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA allelic composition varies among individuals, populations and higher taxa. Natural selection acts upon genetic variability in the regulatory aspects of growth and morphogenesis to stabilize and coordinate ontogenies to produce a particular morphological form or to cause a directional change culminating in a new morphological form. Thus, a plausible causal model of variability in growth and morphogenesis must include a rigorous description of form at various points during ontogeny, elucidation of the developmental origins and ontogenies of the components of form and quantification of the underlying causes of their variability and covariability. Considerable energy has been devoted to precise quantitative description of form (e.g., THOMPSON 1917; JOLICOEUR and MOSIMANN 1960; BLACKITH and REYMENT 1971; BOOKSTEIN 1978, 1984; STRAUSS and BOOKSTEIN 1982; CHEV- ERUD, RUTLEDCE and ATCHLEY 1983). Further, the developmental origins and ontogenies of components of complex morphological structures, such as the mammalian cranium and mandible, are reasonably well understood (HALL 1978; MOORE 1981 ; SLAVKIN 1979). Unfortunately, however, there has been little quantification of the underlying causal factors responsible for variability of morphological form. A variety of genetic, hormonal, vascular, biomechanical and dietary factors have been shown to influence craniomandibular form, but few studies have quantified these causal factors and discussed their relative importance to growth and morphogenesis. In particular, the genetic component has not been systematically examined using plausible models to accurately explore the causal basis of variability. This paper describes and quantifies the underlying causes of variability and covariability in morphological form of the mandible in mature randombred mice. We examine four major aspects of morphological size and shape including (1) the underlying determination of phenotypic variability, (2) the dimensionality of genetic variability in the form of the mandible, (3) whether the genetic correlation structure among traits reflects developmental history and (4) the evolutionary impact of selection on various parts of the mandible. A companion paper (ATCHLEY et al. 1985) examines the genetic aspects of size-related scaling in these mandible traits. MATERIALS AND METHODS Husbandry: ICR randombred mice obtained at 4 wk of age from Sprague-Dawley were allowed to acclimate to our laboratory for 2-3 wk. Randomly chosen males were then mated to randomly chosen females. All litters were standardized to eight individuals, four males and four females. Pups were reared in a crossfostering design where a random half of each litter was nursed by an unrelated female which had pupped on the same day. After weaning, the parents were sacrificed and the carcasses retained for analysis. A total of 3624 mice, including 931 parental generation mice and 2693 progeny, were analyzed. Because of the size of the experiment, the mice were reared as two replicates, and any resultant variation between replicates was removed statistically. Specimen preparation and traits recorded: Progeny were weighed at weekly intervals, beginning at 2 wk after birth and continuing until 70 days of age. Growth in body weight is described by RISKA, ATCHLEY and RUTLEDCE (1984) while ATCHLEY et al. (1984a) have examined the quantitative genetics of brain and body sire association. The progeny were sacrificed at 70 days of age, and carcasses for both the parental and progeny generations were skinned, eviscerated and skele-

3 GENETICS OF MANDIBLE FORM 557,.... -".' '14 b I FIGURE 1.-Outline of the mature mouse mandible denoting the position of morphological landmarks used to describe the traits presented in Table 1. tonized by dermestid beetles. The cleaned dentary bones were separated at the mandibular symphysis, and the right half was placed on a glass microscope slide on the negative carrier of a photographic enlarger. The mandible image was projected onto a digitizer connected to a microcomputer, and 19 landmark points were recorded in x-y coordinate space (Figure 1). Associated musculature for the mandible is shown in Figure 2. Fourteen traits were chosen to represent the functional and morphogenetic aspects of the rodent mandible. Among these were Euclidean distances between points, vertical or horizontal distances relative to a horizontal reference line through points 2 and 4 and areas of polygons defined by a series of points. Table 1 gives a description of the traits, together with a code. Genetic model: Mammals develop under the influence of two different genotypes-the genotype of the individual and that of its mother-and both have significant effects on phenotypic variability. The mother's genotype defines the effect from the uterine and early postnatal (nursing) environment. As a result, any model explaining the underlying causal components of variability must include both genotypes. Thus, the genetic model for the variance of a trait Y, a; (or its covariance with another trait X) is & = 6; = U$, + CAoAm + 0% + a', where U% = phenotypic variance, azo = direct additive genetic variance, a$. = direct dominance genetic variance, 04, = indirect maternal additive genetic variance, U$, = indirect maternal dominance genetic variance, uaaoan = genetic covariance between Ao and Am, U: = common environmental variance including nonadditive maternal and cage effects, and a% = residual variance unique to the individual mouse. Direct genetic effects in this model (A0 and Do) arise from the individual's own genotype, where Ao stems from the variance of average effects of alleles at loci controlling a particular trait. Do arises from the variance of combinations of alleles at these loci. Indirect effects (Am and Dm) arise from these same relationships in the mother's genotype. These indirect effects arise from genes that are active in the mother but that affect the offspring because of the maternal effect. Covariance between direct and indirect maternal effects (uaaoam) can have a significant effect on the phenotypic variance in the offspring, an effect increasing or decreasing 6% depending on the sign of the covariance. Genes involved in this covariance term may affect growth and morphogenesis directly by mediating growth in the individual itself and indirectly by affecting maternal performance, which, in turn, affects growth and morphogenesis in the progeny (DICKERSON 1947; HAN- RAHAN 1976; RISKA, RUTLEDCE and ATCHLEY 1985a). Variances (covariances) from several types of relatives were used to obtain estimates of genetic

4 558 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA Muscles attaching on medial surface Muscles attaching on lateral surface FIGURE 2.-Attachment points for muscles on the medial and lateral surfaces of the mouse mandible. Abbreviations: AZM = anterior zygomaticomandibularis; D = digastric; G = geniohyoideus and genioglossus; LM = lateral masseter; LP = lateral pterygoid; MP = medial pterygoid; MY = mylohyoid; PZM = posterior zygomaticomandibularis; SM = superficial masseter; T = temporalis. and environmental variance and covariance components. Table 2 gives the expectations for the causal components of similarity between mice of varying degrees of relatedness. These observational components are as follows: (1) cov(0, S)-covariance between sire and offspring; (2) cov(0,n # D)-covariance between nurse and offspring, where the nurse is not the genetic dam; (3) cov(0,d # N)-covariance between dam and offspring, where the offspring was nursed by an unrelated dam; (4) cov(0, D = N)-covariance between dam and offspring, where the dam is also the nurse; (5) cov(fs), D = N-covariance between full sibs nursed by their own dam; (6) cov(fs), D # N- covariance between full sibs nursed by the same unrelated dam; (7) cov(fs), D =,# N-covariance between full sibs, one nursed by the genetic dam, the other by an unrelated nurse; (8) cov(ur), N = N-covariance between unrelated individuals both nursed by the same nurse, the genetic dam of one of them; (9) cov(ur), D, = Np-covariance between unrelated individuals, each nursed by the dam of the other; (10) var(residua1)-variance among full sibs, all with the same nurse. Statistical methodology: Estimates of the causal components of variability in sex-adjusted logtransformed data for the 14 mandible traits were obtained by simultaneous solutions, using a generalized least-squares analysis. Details of the analytical procedure are described elsewhere (RISKA, RUTLEDGE and ATCHLEY ). Ridge regression-like procedures were used on the variance components to assess their stability. Direct additive genetic variance and covariance estimates obtained with this design are quite stable, as shown by their small standard errors compared to other components. As a result, estimates of narrow-sense heritability and additive genetic correlation between traits are quite reliable. The other components (e.g., dominance) are less reliably estimated by this design because of high correlations between the estimates. Dominance estimates were reasonably unstable in the ridge-like analyses, suggesting that the contribution of dominance to phenotypic variability is probably underestimated because of correlation with the environmental variance estimates. Estimates of components associated with maternal performance (VA,, CAoAm, and

5 Descriptions of GENETICS OF MANDIBLE FORM TABLE 1 the mandible traits employed in the genetic analyses, together with a short code Posterior mandible length (P0sTMANLEN)-Euclidean distance from Anterior mandible length (ANTMANLEN)-Euclidean distance from Height at mandibular notch (NOTCHHIGH)-Euclidean distance from Height at incisor region (INcISHIGH)-Euclidean distance from Concavity (CONCAVITY)-VertiCal distance from 3 to a he computed from Height of ascending ramus (RAMUSHIGH)-VeTtiCal distance from 2 to a horizontal line at 16 parallel to the line computed from Condyloid width (condylwrd)-euclidean distance from 15 to 18 a. Condyloid length (C0NDYLLEN)-Euclidean distance from the midpoint of a line from to the midpoint of a line from Coronoid height (CDRONHIGH)-VertiCal distance (perpendicular to 2-4 he) from Coronoid area (CORoNSIzE)-~rea defined by the triangle (1 1, 12, 14) minus the area of (12, 13, 14) 11. Angular process length (ANGLJLARLEN)-EUClidean distance of a line segment from the midpoint of 1-2 to the midpoint Tooth bearing area (TOOTHAREA)-Area of a polygon defined by points (3, 4, 5, 6, 7, a, 9, 11) 13. Superior incisive process curve (SUPERINCIS)-ShOrteSt distance to 8 from a line from Inferior incisive process curve (INFERINCIS)-ShOrteSt distance to 5 from a line from 4-6 Traits are described with references to Figure 1. TABLE 2 Expectations for observational components of variance Causual components and expectations Observational components do gm ~ A ~ A ~ dsa. (a& + 4) a; 1. cov(0, S) cov(0, N # D) cov(0, D # N) cov(0, D = N) cov(fs), D = N cov(fs), D # N cov(fs), D =,# N a. CO~(UR), N = N COV(UR), DI = N var(residua1) More complete descriptions of the observational components are given in the text. V,) were highly variable, as evidenced by the relative sizes of their standard errors. It is not possible to estimate unbiasedly the dominance maternal genetic variance with these analyses; therefore, this source of variation is pooled with the common environmental variance.

6 560 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA In spite of the instability of the initial estimates of direct dominance, they are included here because little is actually known about the levels of dominance variance, particularly in skeletal traits. WRIGHT (1968, p. 418) stated that even if linkage and interaction are treated as negligible in effect, the difficulty of obtaining sufficiently reliable data for estimation of the variance due to dominance is great.... The results tend to confirm the view that dominance is not a general property of minor gene differences involved in quantitative variability, but there was great uncertainty in each individual case. The underlying distributions of variance and covariance components are not well studied; therefore, for statistical inference we assume normal distribution theory. Thus, genetic statistics that differ from zero or from other numerical values by at least two standard errors are assumed to be statistically significant. Obviously, the mandible is morphogenetically and functionally a highly integrated structure, and many of these traits will exhibit varying amounts of intercorrelation. To resolve these intercorrelations, a principal components analysis was carried out on the phenotypic data, and the resultant vectors were rotated to orthogonal simple structure using the Varimax criterion (RUMMEL 1970). The original data are projected onto the Varimax-rotated vectors to produce a new set of synthetic traits, the rotated principal components scores (RPC). These scores position each individual mouse on an axis of multivariate variability described by rotated principal component vectors. Because these scores represent new synthetic morphogenetic traits, their underlying causal components of variability can be estimated as was done with the original univariate traits. Additive genetic and residual environmental correlations are presented for the 14 traits. Additive genetic covariance has a definition equivalent to additive genetic variance in that the indirect maternal covariance is not included. Residual environmental correlation is that correlation after postnatal maternal affects have been removed. A small number of pairwise direct dominance genetic correlations are included for the traits having the largest dominance variance. As noted above, dominance variance and covariance are not very reliably estimated with this design and the standard errors are large; thus, critical discussion and statistical tests based on these estimates are not warranted. However, in a few instances, preliminary correlation data are useful in discussions about common dominance effects among several functionally related traits that exhibit dominance. Three different multivariate statistical procedures are used to explore the structure of the genetic and residual environmental correlations among these traits. First, a UPGMA cluster analysis is perfortned on each correlation matrix to examine hierarchical structure (SNEATH and SOKAL 1973). Second, a Varimax-rotated principal component analysis of each correlation matrix is used to examine multivariate patterns of phenotypic, additive genetic and environmental covariability. Third, the level of integration among the phenotypic, additive genetic and residual environniental correlation matrices is described by an index of integration, I (CHEVERUD et al. 1983). The formula for this index is I = L=, i (A, - 1)2/(n* - n)) where A, is the ith eigenvalue and n is the number of eigenvalues or traits. In a well-conditioned matrix, the index will take values between 0 and 1, where 0 implies no integration (very low or zero correlation coefficients) and 1 is perfect integration where all the correlation coefficients are unity. RESULTS This paper describes four major aspects of morphological size and shape in the rodent mandible including (1) the underlying determination of phenotypic variability; (2) the dimensionality of the genetic variability in the form of the mandible; (3) whether the correlation structure among these 14 traits reflects the developmental history of the mandible; and (4) the evolutionary impact of selection on various parts of the mandible. Results relating to points 1-3 are discussed here, and their relationship to point 4 is considered in the DISCUS- SION.

7 GENETICS OF MANDIBLE FORM 56 1 Variance components: Table 3 provides the variance components and their standard errors for the 14 mandible traits. Proportions of the phenotypic variance due to additive direct genetic variance ( = narrow-sense heritability, h'), direct dominance genetic variance (d2) and additive maternal genetic variance (m') are also given. Negative variance estimates for d2 and m2 are denoted by a blank. Since h', d2 and m2 are proportions, geometric rather than arithmetic means are given. The additive genetic variance component is significantly different from zero for all traits. Narrow-sense heritability estimates range from 0.09 (CONCAVITY and CONDYLWID) to 0.44 (NOTCHHIGH), with a geometric mean of 0.19 over all 14 traits. These heritability estimates are considerably lower than previous full-sib analyses involving mandibular traits (e.g., ATCHLEY 1983a) since heritability estimates in these latter studies included '/2 U&,. The geometric mean for d' is In four traits-superincis, TOOTHAREA, INFERINCIS and CONDYLWID-the estimated dominance genetic variance is a relatively large proportion of the phenotypic variance. The actual variance components for direct dominance have large standard errors, and direct dominance variance is probably underestimated with this design (RISKA, RUTLEDCE and ATCHLEY 1985b). Traits with largest dominance variance are associated with the incisor and molar region of the corpus and the area of the condylar processes. As will be shown later, most of these traits also have a large additive genetic correlation among them. The geometric mean for m2 is 0.07 and one individual estimate (NOTCHHIGH) is significantly different from zero (m' = 0.26). The covariance between additive direct and additive maternal genetic variance is a small proportion of the phenotypic variance; however, in several instances it ranges up to about 8-9% of the variability. In a number of instances, this covariance term is negative; therefore, it has a dampening effect on the phenotypic variance. Covariance components: Additive genetic and residual environmental correlation coefficients among these 14 traits are given in Table 4. Genetic correlations due to dominance are estimated for the seven traits with the largest dominance variance estimates (Table 5). Dominance correlation estimates for many of the remaining traits cannot be obtained because of negative variance estimates. Formulas for computing standard errors for the correlations are not available for the type of simultaneous estimation procedure used here; however, they are expected to be relatively small for the additive genetic and residual environmental correlations, but relatively large for those due to dominance. Assuming these mice are randomly mating (and, as a result, in linkage equilibrium), the additive genetic correlations describe the genetic association between pairs of traits arising from the summed additive effects of alleles at each relevant locus that impinge on both traits, i.e., pleiotropy. Absolute values for the additive genetic correlations range from 0.01 to 1.12, with a mean of 0.32 (ko.02). Only one of the 91 estimates of additive genetic correlations is greater than unity (CONDYLWID with SUPERINCIS = 1.12). This specific estimate probably represents sampling variability around a parametric correlation of near 1.0. Three of the 21 estimated dominance correlations have values above

8 562 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA TABLE 3 Variance components for 14 mandible traits on ICR randombred mice POSTMANLEN ANTMANLEN NOTCHHIGH INCISHIGH CONCAVITY RAMUSHIGH CONDYI.WID CONDYLLEN CORONHIGH CORONSIZE ANGULARLEN TOOTHAREA SUPERINCIS INFERINCIS Trait V,. Vo. V,, CdoAm VC V, VP h2 d2 m t f f I lo f k f f t f f f lo f I k f k f Y f3 I f f nata are sex-adjusted and log-transformed. Elements in the table have been multiplied by h2 = narrow-sense heritability; d2 = the proportion of phenotypic variance due to direct dominance; m2 = the proportion of phenotypic variance due to additive maternal genetic variance. unity, which is expected from the greater instability in estimating of dominance effects. As would be expected in a morphogenetically and functionally highly integrated structure like the mandible, there are several pairs of traits with high additive genetic correlations. These high correlations usually reflect developmental or functional relationships. For example, CONDYLWID has high additive genetic correlations with the curvature of the incisor, SUPERINCIS (1.12), and with other traits reflecting the development of the anterior corpus region, i.e., INCISHIGH (0.62), ANTMANLEN (0.65) and TOOTHAREA (0.78). CONDYLWID, SUPERINCIS, TOOTHAREA and ANTMANLEN all have reasonably

9 GENETICS OF MANDIBLE FORM 563 TABLE 4 Additive genetic and residual environmental correlations between 14 mandible traits Traits POSTMANLEN ANTMANLEN NOTCHHIGH INCISHIGH CONCAVITY RAMUSHIGH CONDYLWID CONDYLLEN CORONHIGH CORONSIZE ANGULARLEN TOOTHAREA SUP ER IN C I S INFERINCIS z P Y E I ~~ All values have been multiplied by 100. Genetic correlations are below the diagonal, and environmental are above the diagonal. large dominance variances (geometric mean of d2 = 0.16). Is this high dominance variance due to a shared dominance effect; that is, do they share a high dominance correlation? With two exceptions (ANTMALEN with CONDLYWID and SUPERINCIS with INFERINCIS), CONDYLWID, ANTMANLEN, TOOTHAREA, SUPERINCIS and INFERINCIS have low intertrait dominance correlations. Thus, except for SUPERINCIS and INFERINCIS, the higher dominance variances in individual measures from the corpus region do not translate into high dominance correlations between traits from within that region. Although dominance effects in one trait are not highly correlated with dominance effects in other traits from the corpus region, this regional relationship does not seem to hold for the ramus. For POSTMANLEN, NOTCHHIGH and CONDYLWID, at least POSTMANLEN has a high correlation with the other two ramus traits; however, NOTCHHIGH and CON- DYLWID have a more modest correlation of 0.4, which is similar to that between INFERINCIS and ANTMANLEN in the corpus region. Residual environmental correlations have lower values than the additive genetic correlations and range in value from 0.01 to The mean of absolute values is only 0.18 (2 0.03). there are only ten coefficients in the matrix that

10 564 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA TABLE 5 Genetic correlations due to dominance between seven mandible traits Traits POSTMANLEN - ANTMANLEN NOTCHHIGH CONDYLWID TOOTH AREA SUPERINCIS INFERINClS All values have been multiplied by are >0.5 and only one trait, TOOTHAREA, that has an environmental correlation >0.5 with more than one trait. Dimensionality of genetic variability in form Table 6 gives the Varimax-rotated principal components analysis of the phenotypic data. Principal component vectors are interpreted by the magnitude and sign of their coefficients. The first phenotypic vector has largest coefficients for TOOTHAREA, ANTMANLEN, INCISHIGH, CONCAVITY, ANGULARLEN and RAMUSHIGH. Thus, these traits reflect measures of the height of the mandible, particularly at the anterior or symphysial end. The remaining phenotypic principal component vectors will not be verbally described in order to conserve space. Table 7 provides the variance components for these multivariate patterns of variability. These four vectors represent 61 % of the total phenotypic variability in these 14 traits. The geometric means are 0.19, 0.07 and 0.06 for h2, d2 and m2, respectively, for these multivariate constructs. These values for independent multivariate patterns are very similar to those averaged for the individual traits. Four eigenvectors were extracted from the genetic correlation matrix and Varimax-rotated. The first vector reflects genetic covariation in the several measures of height or length of the mandible and has highest coefficients for CONCAVITY, ANTMANLEN, CONDYLWID, TOOTHAREA, RAMUSHIGH and ANGULAR- LEN. The second vector reflects genetic variability in the ramus, with largest coefficients for CORONSIZE, POSTMANLEN, NOTCHHIGH, ANGULARLEN and CON- DYLLEN. CONDYLLEN has an opposite sign for its coefficient, so it varies inversely relative to the other four traits. The third genetic vector represents covariation between curvature of the

11 GENETICS OF MANDIBLE FORM 565 TABLE 6 Varimax-rotated principal components of the phenotypic, additive genetic and residual environmental correlations for 14 mandible traits from ICR randombred mice Phenotypic Genetic Environmental Trait POSTMANLEN ANTMANLEN NOTCHHIGH INCISHIGH CONCAVITY RAMUSHIGH CONDYLWID CONDYLLEN CORONHIGH CORONSIZE ANGULARLEN TOOTHAREA SUPERINCIS INFERINCIS Variance exp. % GI PI 32 G2 G3 G GI El 54 G2 59 Gs 73 G4 90 p E ps I08 E p E All coefficients have been multiplied by 100. Below the factor matrices are matrices of the congruence between Varimax-rotated principal components solutions of the phenotypic, genetic and residual environmental correlation matrices. Congruence is given in degrees of the angles between vectors. P = phenotypic; G = additive genetic; E = residual environmental. incisor and condyloid dimensions and has highest values for SUPERINCIS, CON- DYLLEN and CONDYLWID. The last genetic vector reflects an inverse relationship between INCISHIGH and CORONHIGH, so that the thicker the anterior portion of the mandible, the shorter the coronoid process. Four factors were also extracted from the residual environmental correlation matrix. The first environmental vector concerns primarily the lower dimensions of the ramus and has largest coefficients on POSTMANLEN, ANGULARLEN, RAMUSHIGH and CONCAVITY. This vector may simply be describing the environmentally induced variability in the angular process. The second vector describes the environmental covariability in the corpus and has largest coefficients for TOOTHAREA, SUPERINCIS, INCISHIGH and ANTMANLEN.

12 566 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA TABLE 7 Variance components for phenotypic Varimax-rotated principal components scores of 14 mandible traits on ICR randombred mice Trait V,. VD. v.4, CAoAn VC VE VP h2 d2 m' PI f &U U +49 Ps U f40 +I13 k82 +3U 275 +lo4 +54 Pa I47 k U P.j f49 f142 k87 f93 +U7 +lo4 +51 Data are sex-adjusted and log-transformed. Elements in the table have been multiplied by The third environmental vector reflects variability primarily in the upper ramus, with large coefficients for CORONSIZE, CORONHIGH, NOTCHHIGH and CONDYLLEN. Since CONDYLLEN differs in sign, length of the condyloid process varies inversely with ramus height. The fourth vector reflects variability in INFERINCIS, CONDYLWID, RAMUSHIGH and ANTMANLEN. This suggests a pattern of environmental covariability between the length and curvature of the incisor region with the height of the ramus and width of the condyloid process. The index of integration (I) for the phenotypic, additive genetic and residual environmental matrices is 0.27, 0.39 and 0.25, respectively. These values are rather low and mirror the computed average correlations given earlier. This suggests considerable heterogeneity in the correlations arising from a number of independent patterns of variability with a resultant low level of morphogenetic integration. Do genetic and environmental factors have similar effects on the correlations between traits? The product-moment correlation between the 91 pairs of genetic and environmental correlations in Table 4 is 0.43 (P < 0.01). Concordance between phenotypic, genetic and residual environmental vectors can be ascertained by the angle between vectors computed as the arc cosine of the cross-products of the vector coefficients divided by the square root of the product of the values. Vectors exhibiting an angle of 90" are orthogonal to each other, whereas those with a value of 0" are completely concordant. The values of vector concordance are given in Table 6. Between the phenotypic and genetic factor matrices, vectors PI with GI and P2 with G2 exhibit greatest concordance. For the genetic and residual environmental matrices, GI with E4 and GP with ES show most similarity. Developmental history vs. genetic correlation UPGMA cluster analysis of the additive genetic correlations was performed on 12 of the 14 traits (Figure 3). CONCAVITY and INFERINCIS were excluded from these analyses. These latter two traits help define the overall outline of

13 I' GENETICS OF MANDIBLE FORM 567 I I I I I I I 0! GENETIC CORRELATION POSTMANLEN ANGULARLEN NOTCHHIGH CORONSIZE ANTMANLEN TOOTHAREA INCISHIGH RAMUSHIGH CONDYLWID SUPERINCIS CONDYLLEN CORONHIGH FIGURE J.-UPGMA cluster analysis of the additive genetic correlations of 12 traits from the mature mouse mandible. Actual correlations are given in Table 4. the mandible, however, they are difficult to integrate into discussions about growth and morphogenesis. One large cluster of ten traits is produced, while the remaining two traits are unrelated to the remaining ten in a genetic correlation sense. Cluster analysis is not a tool for statistical inference; that is, it is difficult to rigorously delimit clusters in a probabilistic sense, such as one might do with multiple comparisons testing of arithmetic means. As a result, it is difficult to know where to make partitions within the large cluster in Figure 3. We have chosen to be rather conservative and to delimit the clusters at a value slightly greater than 0.4. There are three distinct clusters of two or more traits. One cluster, composed of POSTMANLEN, ANGULARLEN, NOTCHHIGH and CORONSIZE, relates to the dimensions of the ramus. POSTMANLEN and ANGULARLEN are measures of the lower portion of the ramus, and a part-whole relationship exists, in that growth in ANGULARLEN is a major contributor to POSTMANLEN. NOTCHHIGH and co- RONSIZE relate to the- height of the ramus. All four of these traits relate to posterior growth of the mandible (Fig. 4). The second cluster includes ANTMANLEN, TOOTHAREA and INCISHIGH, and all measure various features of the corpus or distal portion of the mandible. As such, they reflect an anterior growth pattern of the mandible (Figure 4). RA- MUSHIGH measures the height of the ramus and is linked to this latter cluster of corpus traits at a genetic correlation of approximately 0.4. The third cluster describes the high correlation between CONDYLWID and SUPERINCIS, discussed previously. The two remaining measures, CORONHIGH and CONDYLLEN, act as independent traits. They both possess significant additive genetic variance (Table 3);

14 568 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA POSTMANLEN ANGULARLEN RAMUSHIGH NOTCHHIGH - INCISHIGH CORONHIGH CORONSIZE DISCUSSION Mandibular growth and morphogenesis has been the subject of considerable experimental analysis (BHASKAR 1953; HALL 1978, 1982a,b, 1984; MOORE and LAVELLE 1974; MOORE 1981 ; SPERBER 1981 ; SLAVKIN 1979). Understanding these results is facilitated by a brief review of some aspects of mandibular growth and morphogenesis. Origzn of the mandible: The mammalian mandible arises from neural crestderived mesenchyme and contains four progenitor cell populations: chondroblasts, fibroblasts, osteoblasts and myoblasts. Interplay among these cells and their derivative tissues, together with neural and vascular tissue and the teeth, will determine mandibular form. The majority of the mandible is composed of a single bone, the dentary. The body of the dentary and the basal portion of the condylar process results from intramembranous ossification. This ossifying membrane, together with its accompanying neural and muscular tissue, is attached to Meckel s cartilage along the future body of the mandible. As ossification and the accompanying development of associated neural and muscular systems proceeds, secondary mandibular cartilages appear on the dermal bone at the future sites of the condylar, coronoid and angular processes (HALL 1978). Through endochondral ossification, these secondary cartilages will serve an important role in growth in the ramus of the mandible.

15 GENETICS OF MANDIBLE FORM 569 The causal components of skeletal growth and morphogenesis have often been referred to by developmental biologists as being of either intrinsic or extrinsic origin (MOSS 1972; THOROGOOD 1983; HINCHLIFFE and JOHNSON 1983; HALL 1984). Intrinsic factors are involved with programming tissuespecific morphogenesis and generating the basic form of individual skeletal elements. According to HALL (1982a,b), intrinsic processes include the initial size of the embryonic primordia, regulation of component synthesis, the intrinsic rate and polarization of cell division, the amount of extracellular matrix deposited by each cell, how the cells interact to produce a tissue or organ of a specific shape, the extent of programmed cell death, and so on. Developmental variability in these processes arises from genetic as well as nongenetic causal components. Extrinsic refers to influences on individual skeletal elements arising from adjacent developing tissues, such as muscles, nerves, blood vessels, teeth and connective and skeletal tissue. Extrinsic factors, including biomechanical and biophysical factors, hormones and functional matrices, influence final form and size of the skeletal element by acting in conjunction with intrinsic factors. In terms of their morphogenetic effects, extrinsic factors may be local (e.g., biomechanical) or systematic (e.g., hormones and vitamins). HALL (1984) has described extrinsic influences as epigenetic factors; that is, epigenetic interactions being those where one tissue has an influence on the development of another. Further, there may be interactive and feedback loops occur between intrinsic and extrinsic factors. As in the case of intrinsic factors, variability in extrinsic or epigenetic factors includes both heritable and nonheritable components (HALL 1984). Late prenatal and early postnatal mandibular growth and morphogenesis occurs by several processes that are important in clarifying the origin of variability (MOORE 1981). Secondary cartilage associated with the coronoid, angular and condylar processes undergoes endochondral ossification. During early postnatal growth, development and maintenance of the cartilage in these mandibular processes depend on local muscle activity so that response to local mechanical stimuli produces a balance with bone deposition and resorption (HALL 1978). Extirpation of the medial pterygoid or masseter muscles causes resorption of the angular process, while removal of the temporal muscles causes a similar reduction in size of the coronoid process (HALL 1982a). Congenital paralysis of these muscles results in a considerable reduction or absence of the mandibular processes (HERRING and LAKARS 1981). Thus, development of the secondary cartilages and their effect on these mandibular processes is compensatory or adaptive and depends on muscle development and activity. The condylar region is a major region of postnatal growth in the mandible. The actual direction of intrinsic growth produced by the condylar region depends on its precise shape (MOORE 1981); however, its orientation is generally posterosuperior, so that increments of growth increase mandibular height and depth. Since the condyle abuts the cranial base at the temporomandibular joint, the intrinsic growth results in the mandible being displaced anteroinferiorl y.

16 570 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA In addition, there are numerous regional surface remodeling changes that serve to maintain the proportions of the mandible as it increases in size (MOORE 1981). Bone deposition occurs at the posterior border of the ramus and the anterior end of the symphysial region. Resorption of bone occurs along the anterior border of the ramus (coronoid process) and in the alveolar region. These deposition and resorption patterns produce a posteriorly directed component of growth that is superimposed upon the intrinsic growth of the mandible and matches the posterior component of growth at the condylar cartilage. Causal components of mandibular size and shape: The patterns in the components of phenotypic variability in mandibular dimensions reflect both the heritable and nonheritable ontogenetic history of these traits (ATCHLEY 1983a; NONAKA and NAKATA 1984; BAILEY 1985). All mandible dimensions exhibit significant amounts of direct additive genetic variance, and heritabilities range from 10-44%. Traits representing the major dimensions of the bone usually had reasonably large heritabilities; however, traits where some of the variability more obviously arises from extrinsic biomechanical factors had a larger proportion of phenotypic variability due to environmental rather than additive genetic effects. Three such traits are condylwid, CORONSIZE and ANGULARLEN, and the geometric mean of the heritability for these three traits is 0.1 1, compared with 0.22 for the remaining 11 traits. The level of dominance variance estimated for some traits is rather unexpected in view of the often-made assumption of no significance levels of dominance in quantitative genetics studies of skeletal traits. Obviously, at least in the mandible, dominance can be an important component of phenotypic variability, occasionally exceeding the proportional contribution of direct additive genetic variance. Traits related to the shapes of certain functional components of the mandible seemed to have reasonably large fractions of their genetic variability in the dominance component. Included here are incisor shape, condylar dimensions and area of the mandible associated with the molars. Dimensionality of the variability: The mandible appears to be a single bone, but it can actually be partitioned into several developmental and functional skeletal units (Figure 5) including the basal unit (inferior alveolar neurovascular bundle), the condylar (temporomandibular joint and lateral pterygoid muscle), the coronoid (temporalis muscle), the angular (masseter and medial pterygoid muscle), the coronoid (temporalis muscle), the angular (masseter and medial pterygoid muscles), the alveolar (mandibular dentitions), and the symphysial (facial and genial muscles) (MOORE 1973, 1981). Each skeletal unit is influenced by the growth pattern of its own functional unit. In view of this embryologic heterogeneity, the mandible should show a number of distinct morphogenetic patterns of variability belying the unitary appearance of this bone. This is, in fact, what the results demonstrate. For example, the cluster analyses indicate the existence of a number of clusters of traits. However, the level of correlation at which the various clusters are joined suggests a number of independent genetically controlled developmental processes reflecting patterns of morphological variability based on embryologic origin, functional specialization or anatomical continguity.

17 GENETICS OF MANDIBLE FORM 57 1 MURINE MANDIBLE DEVELOPMENT Meckel s Cartilage Neural Crest of - First Arch Anterior Qrorrlh Incisor Alveolar Process Symphyseal Secondary Cartilage SuDe.rlor Growth Molar Alveolar Process, PosIerior Growth c Angular Process Suppositions about the complexity of the underlying control of mandibular size and shape are supported by the dimensionality of the phenotypic correlation matrix as shown by the Varimax-rotated phenotypic principal components. Each vector reflects an independent pattern of morphological variability, and all four vectors have significant amounts of genetic variance. Further, the patterns of direct additive us. direct dominance differed considerably between eigenvectors. Finally, both the additive genetic and residual environmental correlation matrices also had multiple and independent patterns of covariability. Additional evidence for the complexity in the underlying causal components stems from comparison of genetic integration values for skeletal traits from various regions of the body relative to the complexity of their development. Numerical values of the integration statistic, I, are provided describing the homogeneity of pairwise phenotypic, genetic and residual environmental correlations. The higher the correlation among traits, the fewer independent dimensions of variability and the closer Z will be to unity. Although integration of the mandible dimensions is judged to be low, no Z values were given for other body regions to judge the appropriateness of this statement. Table 8 provides Z values for sets of traits from several rodent body regions arising from both static and ontogenetic data. As will be seen, I values parallel complexity in embryologic origin of the structures. Further, integration is less in the mandible than in almost any other set of dimensions. Comparison of integration in 19 measurements from the rat scapula and humerus (LEAMY and ATCHLEY 1984) is of interest because the scapula is

18 ~ 572 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA TABLE 8 Index of integration (I) for phenotyfiic (P), genetic (G) and residual environmental (E) correlation matrices from various static and ontogenetic studies in rats and mice IP IC , Studies are labeled as 1-7 and are identified as follows: (1) mouse mandible (14 traits)-this study; (2) mouse pelvis (8 traits)-l. A. P. KOHN and W. R. ATCHLEY (unpublished results); (3) rat pelvis (8 traits)-l. A. P. KOHN and W. R. ATCHLEY (Unpublished results); (4) rat scapula and humerus (19 traits)-leamy and ATCHLEY 1984; (5) rat body weight through Ontogeny-CHEV- ERUD, RUTLEDGE and ATCHLEY 1983; (6) rat tail length through ontogeny-cheverud, RUTLEDGE and ATCHLEY 1983; (7) mouse live body measurements during ontogeny (5 traits)-leamy and CHEVERUD analogous to the mandible in that it also appears in the adult organism as a single bone with extensive associated musculature. Further, the scapula develops from several ossification centers. However, Z values for phenotypic, genetic and residual environmental correlations are considerably higher for the scapular traits than for the mandible. IC is about 40% higher for the scapula compared with that for the mandible. L. A. P. KOHN and W. R. ATCHLEY (unpublished results) examined eight dimensions from the pelvis of mice and rats. The mice are a subset of those used in this study. Zp and Z, are comparable between the pelvis and mandible; however, 1, in the mandible data is approximately 40% less than Z, from the pelvis of both the mouse and the rat. LEAMY and CHEVERUD (1984) examined the genetic correlation of age-specific values of the same trait followed through postnatal ontogeny. They give ontogenetic I values for five traits at five postnatal ages in sibs of the mice used in the present study. The traits include body weight, head length, trunk length, trunk circumference and tail length. The values for Z for each trait, as well as the averages over all traits, are higher than those given here for the mandible. These data suggest that the genetic components underlying rodent mandible size and shape are more heterogeneous than those involved in other complex skeletal structures. Neither the rodent scapula nor pelvis seem to have the degree of extrinsic control on bone development found in the mandible. Developmental history: Does the pattern of genetic correlations among these traits reflect the developmental history of the mandible? This intriguing question arises because the additive genetic correlations are a reflection of the genetic similarity arising from pleiotropy among the traits. It has been suggested (ATCHLEY 1984) that the additive genetic correlation itself has a strong developmental component because the genes affecting a pair of traits jointly are not simply those acting only at that particular time. The genetic correlation also will include genetic associations occurring at earlier periods in ontogeny, because many developmental processes are hierarchical and also depend on

19 GENETICS OF MANDIBLE FORM 573 Condylar Process AI gular Process Ch FIGURE 6.--Schematic BER 1981). illustration of the functional units of the mandible. (Redrawn from SPER- processes occurring at different times. Thus, are higher genetic correlations the result of more common developmental processes? The developmental history of the rodent mandible is reasonably well-known (BHASKAR 1953; HALL 1978, 1982a,b; MOORE 1981), and much of this information is summarized in Figure 5. The skeletal structure of the mandible contains two different developmental lineages representing intramembraneous us. endochondral patterns of ossification of cartilage; that is, ossification of primary or secondary cartilage, respectively. Considering the so-called functional units of the mandible described in Figure 6, the body of the dentary and basal portion of the condylar process is derived by intramembrane ossification. The other lineages, associated with the ossification of secondary cartilage, include the angular and coronoid processes and the remainder of the condyloid process. The prenatal and early postnatal developmental history of these various lineages are different. Further, the lineage containing those structures derived from secondary cartilage is heterogeneous in terms of the underlying causal factors (different groups of biomechanical factors stimulating their development). Part of the problem with discussing a developmental history as reflected by the pattern of genetic correlations among these traits is that some include more than one functional unit. For example, TOOTHAREA includes portions of the mandible from the body as well as the alveolar process, whereas POSTMAN- LEN includes skeletal material from the body and angular process. However, in spite of these difficulties, in several instances, the hierarchical pattern of genetic correlations as reflected by the cluster analysis does represent ontogenetic history. For example, ANTMANLEN, TOOTHAREA and INCISHIGH cluster together, as do ANGULARLEN and POSTMANLEN. However, the similarity in genetic correlations between pairs of traits can be the result of a form of parallelism in development because high genetic cor-

20 574 W. R. ATCHLEY, A. A. PLUMMER AND B. RISKA relations between unrelated pairs of traits can be achieved by quite different developmental patterns. ATCHLEY et al. (1985) describe several examples of the diversity in origin of high genetic correlations between these mandible traits and adult body weight. The coordination of growth trajectories, which is one source of high genetic correlations, may occur by compensating processes that accelerate growth at one period of development and retard it at others (RISKA, ATCHLEY and RUTLEDGE 1984; ATCHLEY 1984). Further, structures of embryologically heterogeneous origins can exhibit high genetic correlations simply because of a simultaneous response to a common growth stimulating factor, e.g., growth hormone or somatomedins (ATCHLEY et al ). This may be the reason for the high genetic correlation between mandible dimensions and femur length in rats (ATCHLEY 1983a). Selection: An evolutionary consequence of the diversity of morphogenetic patterns and resultant low genetic integration is that selection on some parts of the mandible will invoke a heterogeneous response in other mandibular dimensions. The direct response to selection in a single trait is a function of the heritability and intensity of selection. However, associated with a direct response to selection for a trait is a correlated response in other traits possessing significant additive genetic covariance with the trait under selection (FAL- CONER 1981). Indeed, the effect of selection for a single mandible dimension on the remainder of the mandible is defined by the additive genetic and phenotypic variance-covariance matrices. Thus, selection to alter the size and/ or shape of different regions of the mandible might require different selection indices. Individual traits associated with the overall dimensions of the mandible (NOTCHHIGH, TOOTHAREA, RAMUSHIGH, CONDYLHIGH, CONDYLLEN, INCISHIGH and ANTMALEN) had the greatest proportion of additive genetic variance. All things being equal, one would expect that the overall dimensions of the mandible would respond readily to selection. Incisor shape and condylar width (SUPERINCIS, INFERINCIS and CONDYLWID) are dimensions with a greater proportion of their genetic variance in the form of direct dominance variance and, as a result, would be expected to be less responsive to selection. These conclusions are reinforced by the multivariate results. The cluster analysis of the genetic correlations in conjunction with the individual correlation coefficients aids in the speculation about the morphogenetic effects of selection. INFERINCIS, CORONHIGH and CONDYLLEN would be expected to behave independently. These three traits possess additive genetic variance; however, they exhibit little additive genetic correlation with the remaining mandible dimensions. The correlation structure of the remaining 11 traits is such that selection on any of them would produce some level of correlated response in the others, the magnitude being a function of the heritability and genetic correlation. However, this discussion relates to selection and response in adult traits only and ignores the fact that there may be a significant ontogenetic component to genetic variance-covariance structure among these traits. If the variance-covariance structure changes during ontogeny, then the response to selection

21 GENETICS OF MANDIBLE FORM 575 might be expected to vary as well, depending on when during ontogeny selection occurred, and on which traits. Based on genetic correlations between these traits in adult mice and body weight and weight gain during postnatal ontogeny, ATCHLEY et al. (1985) suggest that the genetic variance-covariance structure among these traits may have a significance ontogenetic component. ANT- MANLEN and POSTMANLEN at 70 days of age have similar genetic correlations with body weight at 14 days of age and body weight gain between conception and 14 days of age. However, the correlation of these traits with body weight at 70 days of age is quite different, and they arrive at this divergence correlation by different relationships with weight gain after 28 days of age. Thus, the genetic variance-covariance matrix may not be as stable during ontogeny as has been supposed. The result is that accurate predictions of response to selection in the adults may need to be modified to include information about the genetic variance-covariance structure at other points during ontogeny. We are indebted to our colleague JACK RUTLEDCE for many suggestions and critical comments while the research was in progress. BRIAN K. HALL, SUSAN W. HERRING, JAMES M. CHEVERUD and LUCI A. KOHN made numerous important constructive comments on the manuscript and provided us with timely assistance on matters of development and anatomy. We are particularly grateful to SUSAN HERRING who provided the information in Figure 5. This research was supported by National Science Foundation grant DEB and by the College of Agriculture and Life Sciences of the University of Wisconsin, Madison. Contribution 2820 from the Laboratory of Genetics, University of Wisconsin. LITERATURE CITED ATCHLEY, W. R., 1983a A genetic analysis of the mandible and maxilla in the rat. J. Craniofacial Genet. Dev. Biol. 3: ATCHLEY, W. R., 1983b Some genetic aspects of morphometric variation. pp In: Numerical Taxonomy, Edited by J. FELSENSTEIN. Springer-Verlag, Berlin. ATCHLEY, W. R., 1984 Ontogeny, timing of development, and genetic variance-covariance structure. Am. Nat. 123: ATCHLEY, W. R., S. W. HERRING, B. RrsKA and A. A. PLUMMER, 1984a Effects of the muscular dysgenesis gene on developmental stability in the mouse mandible. J. Craniofacial Genet. Dev. Biol. 4: ATCHLEY, W. R., A. A. PLUMMER and B. RISKA, 1985 Genetic analysis of size scaling patterns in the mouse mandible. Genetics 111: ATCHLEY, W. R., B. RISKA, L. A. KOHN, A. A. PLUMMER and J. J. RUTLEDGE, 1984b A quantitative genetic analysis of brain and body size associations, their origin and ontogeny: data from mice. Evolution 38: BAILEY, D. W., Genes that affect the shape of the murine mandible. J. Hered. 76: 107- BHASKAR, S. N., 1953 Growth pattern of the rat mandible from 13 days insemination age to 30 days after birth. Am. J. Anat. 92: BLACKITH, R. E. and R. A. REYMENT, 1971 York. Multivariate Morphometries. Academic Press, New BONNER, J. T., 1982 Evolution and Development. Springer-Verlag, New York.

The concept of breeding value. Gene251/351 Lecture 5

The concept of breeding value. Gene251/351 Lecture 5 The concept of breeding value Gene251/351 Lecture 5 Key terms Estimated breeding value (EB) Heritability Contemporary groups Reading: No prescribed reading from Simm s book. Revision: Quantitative traits

More information

Lecture 9. Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Synbreed course version 3 July 2013

Lecture 9. Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Synbreed course version 3 July 2013 Lecture 9 Short-Term Selection Response: Breeder s equation Bruce Walsh lecture notes Synbreed course version 3 July 2013 1 Response to Selection Selection can change the distribution of phenotypes, and

More information

Lecture 7 Correlated Characters

Lecture 7 Correlated Characters Lecture 7 Correlated Characters Bruce Walsh. Sept 2007. Summer Institute on Statistical Genetics, Liège Genetic and Environmental Correlations Many characters are positively or negatively correlated at

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Pleiotropic Scaling of Gene Effects and the Cost of Complexity by Günter P. Wagner et al. Figure S1: Figure S1: schematic summary of findings. (a) Most QTL affect a relatively small number of traits (

More information

Resemblance among relatives

Resemblance among relatives Resemblance among relatives Introduction Just as individuals may differ from one another in phenotype because they have different genotypes, because they developed in different environments, or both, relatives

More information

MIXED MODELS THE GENERAL MIXED MODEL

MIXED MODELS THE GENERAL MIXED MODEL MIXED MODELS This chapter introduces best linear unbiased prediction (BLUP), a general method for predicting random effects, while Chapter 27 is concerned with the estimation of variances by restricted

More information

Multiple random effects. Often there are several vectors of random effects. Covariance structure

Multiple random effects. Often there are several vectors of random effects. Covariance structure Models with multiple random effects: Repeated Measures and Maternal effects Bruce Walsh lecture notes SISG -Mixed Model Course version 8 June 01 Multiple random effects y = X! + Za + Wu + e y is a n x

More information

Models with multiple random effects: Repeated Measures and Maternal effects

Models with multiple random effects: Repeated Measures and Maternal effects Models with multiple random effects: Repeated Measures and Maternal effects 1 Often there are several vectors of random effects Repeatability models Multiple measures Common family effects Cleaning up

More information

QUANTITATIVE GENETICS OF GEOMETRIC SHAPE IN THE MOUSE MANDIBLE

QUANTITATIVE GENETICS OF GEOMETRIC SHAPE IN THE MOUSE MANDIBLE Evolution, 55(11), 2001, pp. 2342 2352 QUANTITATIVE GENETICS OF GEOMETRIC SHAPE IN THE MOUSE MANDIBLE CHRISTIAN PETER KLINGENBERG 1,2 AND LARRY J. LEAMY 3,4 1 Laboratory for Development and Evolution,

More information

Selection on Multiple Traits

Selection on Multiple Traits Selection on Multiple Traits Bruce Walsh lecture notes Uppsala EQG 2012 course version 7 Feb 2012 Detailed reading: Chapter 30 Genetic vs. Phenotypic correlations Within an individual, trait values can

More information

Developmental integration in a complex morphological structure: how distinct are the modules in the mouse mandible?

Developmental integration in a complex morphological structure: how distinct are the modules in the mouse mandible? EVOLUTION & DEVELOPMENT 5:5, 522 531 (2003) Developmental integration in a complex morphological structure: how distinct are the modules in the mouse mandible? Christian Peter Klingenberg, a, Katharina

More information

Genetic Divergence in Mandible Form in Relation to Molecular Divergence in Inbred Mouse Strains

Genetic Divergence in Mandible Form in Relation to Molecular Divergence in Inbred Mouse Strains Copyright 1988 by the Genetics Society of America Genetic Divergence in Mandible Form in Relation to Molecular Divergence in nbred Mouse Strains William R. Atchley,* Scott Newman+ and David E. Cowley*

More information

Morphometric integration and modularity in configurations of landmarks: tools for evaluating a priori hypotheses

Morphometric integration and modularity in configurations of landmarks: tools for evaluating a priori hypotheses EVOLUTION & DEVELOPMENT 11:4, 405 421 (2009) DOI: 10.1111/j.1525-142X.2009.00347.x Morphometric integration and modularity in configurations of landmarks: tools for evaluating a priori hypotheses Christian

More information

Introduction to Embryology. He who sees things grow from the beginning will have the finest view of them.

Introduction to Embryology. He who sees things grow from the beginning will have the finest view of them. He who sees things grow from the beginning will have the finest view of them. Aristotle 384 322 B.C. Introduction to Embryology This lecture will introduce you to the science of developmental biology or

More information

Variation and its response to selection

Variation and its response to selection and its response to selection Overview Fisher s 1 is the raw material of evolution no natural selection without phenotypic variation no evolution without genetic variation Link between natural selection

More information

Variance Components: Phenotypic, Environmental and Genetic

Variance Components: Phenotypic, Environmental and Genetic Variance Components: Phenotypic, Environmental and Genetic You should keep in mind that the Simplified Model for Polygenic Traits presented above is very simplified. In many cases, polygenic or quantitative

More information

Folding of the embryo.. the embryo is becoming a tube like structure

Folding of the embryo.. the embryo is becoming a tube like structure The embryo is a Folding of the embryo.. the embryo is becoming a tube like structure WEEK 4 EMBRYO General features Primordia of the brain Somites Primordia of the heart Branchial arches Primordia

More information

Quantitative characters - exercises

Quantitative characters - exercises Quantitative characters - exercises 1. a) Calculate the genetic covariance between half sibs, expressed in the ij notation (Cockerham's notation), when up to loci are considered. b) Calculate the genetic

More information

Cell-Cell Communication in Development

Cell-Cell Communication in Development Biology 4361 - Developmental Biology Cell-Cell Communication in Development October 2, 2007 Cell-Cell Communication - Topics Induction and competence Paracrine factors inducer molecules Signal transduction

More information

Modularity for Mathematica User s Guide Version 2.0

Modularity for Mathematica User s Guide Version 2.0 Modularity 2.0 for Mathematica P. David Polly and Anjali Goswami, 2010 (updated April 2018) User s Guide Version 2.0 For use with: Goswami, A. & Polly, P. D. 2010 Methods for studying morphological integration,

More information

Enduring understanding 1.A: Change in the genetic makeup of a population over time is evolution.

Enduring understanding 1.A: Change in the genetic makeup of a population over time is evolution. The AP Biology course is designed to enable you to develop advanced inquiry and reasoning skills, such as designing a plan for collecting data, analyzing data, applying mathematical routines, and connecting

More information

INTRODUCTION TO ANIMAL BREEDING. Lecture Nr 3. The genetic evaluation (for a single trait) The Estimated Breeding Values (EBV) The accuracy of EBVs

INTRODUCTION TO ANIMAL BREEDING. Lecture Nr 3. The genetic evaluation (for a single trait) The Estimated Breeding Values (EBV) The accuracy of EBVs INTRODUCTION TO ANIMAL BREEDING Lecture Nr 3 The genetic evaluation (for a single trait) The Estimated Breeding Values (EBV) The accuracy of EBVs Etienne Verrier INA Paris-Grignon, Animal Sciences Department

More information

Variance Component Models for Quantitative Traits. Biostatistics 666

Variance Component Models for Quantitative Traits. Biostatistics 666 Variance Component Models for Quantitative Traits Biostatistics 666 Today Analysis of quantitative traits Modeling covariance for pairs of individuals estimating heritability Extending the model beyond

More information

Where Do Bat Wings Come From?

Where Do Bat Wings Come From? Where o at Wings ome From? 1 ats are the only mammals that have evolved the power of flight. They can avoid obstacles and slip through tight spaces. Many species are nocturnal and use echolocation to guide

More information

Chapter 18 Lecture. Concepts of Genetics. Tenth Edition. Developmental Genetics

Chapter 18 Lecture. Concepts of Genetics. Tenth Edition. Developmental Genetics Chapter 18 Lecture Concepts of Genetics Tenth Edition Developmental Genetics Chapter Contents 18.1 Differentiated States Develop from Coordinated Programs of Gene Expression 18.2 Evolutionary Conservation

More information

Paraxial and Intermediate Mesoderm

Paraxial and Intermediate Mesoderm Biology 4361 Paraxial and Intermediate Mesoderm December 6, 2007 Mesoderm Formation Chick Major Mesoderm Lineages Mesodermal subdivisions are specified along a mediolateral axis by increasing amounts of

More information

Animal Model. 2. The association of alleles from the two parents is assumed to be at random.

Animal Model. 2. The association of alleles from the two parents is assumed to be at random. Animal Model 1 Introduction In animal genetics, measurements are taken on individual animals, and thus, the model of analysis should include the animal additive genetic effect. The remaining items in the

More information

... x. Variance NORMAL DISTRIBUTIONS OF PHENOTYPES. Mice. Fruit Flies CHARACTERIZING A NORMAL DISTRIBUTION MEAN VARIANCE

... x. Variance NORMAL DISTRIBUTIONS OF PHENOTYPES. Mice. Fruit Flies CHARACTERIZING A NORMAL DISTRIBUTION MEAN VARIANCE NORMAL DISTRIBUTIONS OF PHENOTYPES Mice Fruit Flies In:Introduction to Quantitative Genetics Falconer & Mackay 1996 CHARACTERIZING A NORMAL DISTRIBUTION MEAN VARIANCE Mean and variance are two quantities

More information

Principles of Experimental Embryology

Principles of Experimental Embryology Biology 4361 Developmental Biology Principles of Experimental Embryology September 19, 2006 Major Research Questions How do forces outside the embryo affect its development? (Environmental Developmental

More information

Big Idea 1: The process of evolution drives the diversity and unity of life.

Big Idea 1: The process of evolution drives the diversity and unity of life. Big Idea 1: The process of evolution drives the diversity and unity of life. understanding 1.A: Change in the genetic makeup of a population over time is evolution. 1.A.1: Natural selection is a major

More information

Comparative Vertebrate Anatomy Specific Objectives

Comparative Vertebrate Anatomy Specific Objectives Comparative Vertebrate Anatomy Specific Objectives Page 1 General Information A course in Comparative Morphology can be approached from a number of different directions. In my opinion, the important aspects

More information

AP Curriculum Framework with Learning Objectives

AP Curriculum Framework with Learning Objectives Big Ideas Big Idea 1: The process of evolution drives the diversity and unity of life. AP Curriculum Framework with Learning Objectives Understanding 1.A: Change in the genetic makeup of a population over

More information

Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Uppsala EQG course version 31 Jan 2012

Short-Term Selection Response: Breeder s equation. Bruce Walsh lecture notes Uppsala EQG course version 31 Jan 2012 Short-Term Selection Response: Breeder s equation Bruce Walsh lecture notes Uppsala EQG course version 31 Jan 2012 Response to Selection Selection can change the distribution of phenotypes, and we typically

More information

Evolution and development of shape: integrating quantitative approaches

Evolution and development of shape: integrating quantitative approaches Evolution and development of shape: integrating quantitative approaches Christian Peter Klingenberg Abstract Morphological traits have long been a focus of evolutionary developmental biology ( evo-devo

More information

Lecture 4. Basic Designs for Estimation of Genetic Parameters

Lecture 4. Basic Designs for Estimation of Genetic Parameters Lecture 4 Basic Designs for Estimation of Genetic Parameters Bruce Walsh. Aug 003. Nordic Summer Course Heritability The reason for our focus, indeed obsession, on the heritability is that it determines

More information

Lecture WS Evolutionary Genetics Part I 1

Lecture WS Evolutionary Genetics Part I 1 Quantitative genetics Quantitative genetics is the study of the inheritance of quantitative/continuous phenotypic traits, like human height and body size, grain colour in winter wheat or beak depth in

More information

Lecture 6: Selection on Multiple Traits

Lecture 6: Selection on Multiple Traits Lecture 6: Selection on Multiple Traits Bruce Walsh lecture notes Introduction to Quantitative Genetics SISG, Seattle 16 18 July 2018 1 Genetic vs. Phenotypic correlations Within an individual, trait values

More information

Selection on multiple characters

Selection on multiple characters Selection on multiple characters Introduction So far we ve studied only the evolution of a single trait, e.g., height or weight. But organisms have many traits, and they evolve at the same time. How can

More information

Contrasts for a within-species comparative method

Contrasts for a within-species comparative method Contrasts for a within-species comparative method Joseph Felsenstein, Department of Genetics, University of Washington, Box 357360, Seattle, Washington 98195-7360, USA email address: joe@genetics.washington.edu

More information

A A A A B B1

A A A A B B1 LEARNING OBJECTIVES FOR EACH BIG IDEA WITH ASSOCIATED SCIENCE PRACTICES AND ESSENTIAL KNOWLEDGE Learning Objectives will be the target for AP Biology exam questions Learning Objectives Sci Prac Es Knowl

More information

Maternal Genetic Models

Maternal Genetic Models Maternal Genetic Models In mammalian species of livestock such as beef cattle sheep or swine the female provides an environment for its offspring to survive and grow in terms of protection and nourishment

More information

Osteology 101: It s all in the Bones (Adapted from Walker, S Exploring Physical Anthropology)

Osteology 101: It s all in the Bones (Adapted from Walker, S Exploring Physical Anthropology) ANTHR 1-L: Biological Anthropology Lab R. Mitchell, Instructor Name Osteology 101: It s all in the Bones (Adapted from Walker, S. 2005. Exploring Physical Anthropology) Many subjects within the discipline

More information

BIO Lab 5: Paired Chromosomes

BIO Lab 5: Paired Chromosomes Paired Chromosomes Of clean animals and of animals that are not clean.two and two, male and female, went into the ark with Noah as God had commanded Noah. Genesis 7:8-9 Introduction A chromosome is a DNA

More information

Major questions of evolutionary genetics. Experimental tools of evolutionary genetics. Theoretical population genetics.

Major questions of evolutionary genetics. Experimental tools of evolutionary genetics. Theoretical population genetics. Evolutionary Genetics (for Encyclopedia of Biodiversity) Sergey Gavrilets Departments of Ecology and Evolutionary Biology and Mathematics, University of Tennessee, Knoxville, TN 37996-6 USA Evolutionary

More information

Homework Assignment, Evolutionary Systems Biology, Spring Homework Part I: Phylogenetics:

Homework Assignment, Evolutionary Systems Biology, Spring Homework Part I: Phylogenetics: Homework Assignment, Evolutionary Systems Biology, Spring 2009. Homework Part I: Phylogenetics: Introduction. The objective of this assignment is to understand the basics of phylogenetic relationships

More information

Quantitative evolution of morphology

Quantitative evolution of morphology Quantitative evolution of morphology Properties of Brownian motion evolution of a single quantitative trait Most likely outcome = starting value Variance of the outcomes = number of step * (rate parameter)

More information

Lecture 32: Infinite-dimensional/Functionvalued. Functions and Random Regressions. Bruce Walsh lecture notes Synbreed course version 11 July 2013

Lecture 32: Infinite-dimensional/Functionvalued. Functions and Random Regressions. Bruce Walsh lecture notes Synbreed course version 11 July 2013 Lecture 32: Infinite-dimensional/Functionvalued Traits: Covariance Functions and Random Regressions Bruce Walsh lecture notes Synbreed course version 11 July 2013 1 Longitudinal traits Many classic quantitative

More information

Control of Gene Expression

Control of Gene Expression Control of Gene Expression Mechanisms of Gene Control Gene Control in Eukaryotes Master Genes Gene Control In Prokaryotes Epigenetics Gene Expression The overall process by which information flows from

More information

Dr. Amira A. AL-Hosary

Dr. Amira A. AL-Hosary Phylogenetic analysis Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut University-Egypt Phylogenetic Basics: Biological

More information

Anatomy & Physiology Standards and Benchmarks

Anatomy & Physiology Standards and Benchmarks Anatomy & Standards and Standard 1: Understands and applies principles of scientific inquiry Power : Identifies questions and concepts that guide science investigations Uses technology and mathematics

More information

Lecture 24: Multivariate Response: Changes in G. Bruce Walsh lecture notes Synbreed course version 10 July 2013

Lecture 24: Multivariate Response: Changes in G. Bruce Walsh lecture notes Synbreed course version 10 July 2013 Lecture 24: Multivariate Response: Changes in G Bruce Walsh lecture notes Synbreed course version 10 July 2013 1 Overview Changes in G from disequilibrium (generalized Bulmer Equation) Fragility of covariances

More information

Evolutionary quantitative genetics and one-locus population genetics

Evolutionary quantitative genetics and one-locus population genetics Evolutionary quantitative genetics and one-locus population genetics READING: Hedrick pp. 57 63, 587 596 Most evolutionary problems involve questions about phenotypic means Goal: determine how selection

More information

Lesson 16. References: Chapter: 9: Reading for Next Lesson: Chapter: 9:

Lesson 16. References: Chapter: 9: Reading for Next Lesson: Chapter: 9: Lesson 16 Lesson Outline: The Skull o Neurocranium, Form and Function o Dermatocranium, Form and Function o Splanchnocranium, Form and Function Evolution and Design of Jaws Fate of the Splanchnocranium

More information

The Wright Fisher Controversy. Charles Goodnight Department of Biology University of Vermont

The Wright Fisher Controversy. Charles Goodnight Department of Biology University of Vermont The Wright Fisher Controversy Charles Goodnight Department of Biology University of Vermont Outline Evolution and the Reductionist Approach Adding complexity to Evolution Implications Williams Principle

More information

Detailed Learning Outcomes

Detailed Learning Outcomes Detailed Learning Outcomes Following lectures, workshops and directed study activities, students should: 1. Understand the principles behind the study of bioscience in relation to the profession of SLT

More information

3. Properties of the relationship matrix

3. Properties of the relationship matrix 3. Properties of the relationship matrix 3.1 Partitioning of the relationship matrix The additive relationship matrix, A, can be written as the product of a lower triangular matrix, T, a diagonal matrix,

More information

I. Short Answer Questions DO ALL QUESTIONS

I. Short Answer Questions DO ALL QUESTIONS EVOLUTION 313 FINAL EXAM Part 1 Saturday, 7 May 2005 page 1 I. Short Answer Questions DO ALL QUESTIONS SAQ #1. Please state and BRIEFLY explain the major objectives of this course in evolution. Recall

More information

1. they are influenced by many genetic loci. 2. they exhibit variation due to both genetic and environmental effects.

1. they are influenced by many genetic loci. 2. they exhibit variation due to both genetic and environmental effects. October 23, 2009 Bioe 109 Fall 2009 Lecture 13 Selection on quantitative traits Selection on quantitative traits - From Darwin's time onward, it has been widely recognized that natural populations harbor

More information

BIOL Evolution. Lecture 9

BIOL Evolution. Lecture 9 BIOL 432 - Evolution Lecture 9 J Krause et al. Nature 000, 1-4 (2010) doi:10.1038/nature08976 Selection http://www.youtube.com/watch?v=a38k mj0amhc&feature=playlist&p=61e033 F110013706&index=0&playnext=1

More information

Quantitative characters II: heritability

Quantitative characters II: heritability Quantitative characters II: heritability The variance of a trait (x) is the average squared deviation of x from its mean: V P = (1/n)Σ(x-m x ) 2 This total phenotypic variance can be partitioned into components:

More information

Paraxial and Intermediate Mesoderm

Paraxial and Intermediate Mesoderm Biology 4361 Paraxial and Intermediate Mesoderm December 7, 2006 Major Mesoderm Lineages Mesodermal subdivisions are specified along a mediolateral axis by increasing amounts of BMPs more lateral mesoderm

More information

Q Expected Coverage Achievement Merit Excellence. Punnett square completed with correct gametes and F2.

Q Expected Coverage Achievement Merit Excellence. Punnett square completed with correct gametes and F2. NCEA Level 2 Biology (91157) 2018 page 1 of 6 Assessment Schedule 2018 Biology: Demonstrate understanding of genetic variation and change (91157) Evidence Q Expected Coverage Achievement Merit Excellence

More information

Introduction to Genetics

Introduction to Genetics Introduction to Genetics The Work of Gregor Mendel B.1.21, B.1.22, B.1.29 Genetic Inheritance Heredity: the transmission of characteristics from parent to offspring The study of heredity in biology is

More information

Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut

Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut Amira A. AL-Hosary PhD of infectious diseases Department of Animal Medicine (Infectious Diseases) Faculty of Veterinary Medicine Assiut University-Egypt Phylogenetic analysis Phylogenetic Basics: Biological

More information

EXERCISES FOR CHAPTER 3. Exercise 3.2. Why is the random mating theorem so important?

EXERCISES FOR CHAPTER 3. Exercise 3.2. Why is the random mating theorem so important? Statistical Genetics Agronomy 65 W. E. Nyquist March 004 EXERCISES FOR CHAPTER 3 Exercise 3.. a. Define random mating. b. Discuss what random mating as defined in (a) above means in a single infinite population

More information

Reinforcement Unit 3 Resource Book. Meiosis and Mendel KEY CONCEPT Gametes have half the number of chromosomes that body cells have.

Reinforcement Unit 3 Resource Book. Meiosis and Mendel KEY CONCEPT Gametes have half the number of chromosomes that body cells have. 6.1 CHROMOSOMES AND MEIOSIS KEY CONCEPT Gametes have half the number of chromosomes that body cells have. Your body is made of two basic cell types. One basic type are somatic cells, also called body cells,

More information

Lecture 9. QTL Mapping 2: Outbred Populations

Lecture 9. QTL Mapping 2: Outbred Populations Lecture 9 QTL Mapping 2: Outbred Populations Bruce Walsh. Aug 2004. Royal Veterinary and Agricultural University, Denmark The major difference between QTL analysis using inbred-line crosses vs. outbred

More information

Chetek-Weyerhaeuser Middle School

Chetek-Weyerhaeuser Middle School Chetek-Weyerhaeuser Middle School Science 7 Units and s Science 7A Unit 1 Nature of Science Scientific Explanations (12 days) s 1. I can make an informed decision using a scientific decision-making model

More information

Appendix 2. The Multivariate Normal. Thus surfaces of equal probability for MVN distributed vectors satisfy

Appendix 2. The Multivariate Normal. Thus surfaces of equal probability for MVN distributed vectors satisfy Appendix 2 The Multivariate Normal Draft Version 1 December 2000, c Dec. 2000, B. Walsh and M. Lynch Please email any comments/corrections to: jbwalsh@u.arizona.edu THE MULTIVARIATE NORMAL DISTRIBUTION

More information

SIGNIFICANCE OF EMBRYOLOGY

SIGNIFICANCE OF EMBRYOLOGY This lecture will discuss the following topics : Definition of Embryology Significance of Embryology Old and New Frontiers Introduction to Molecular Regulation and Signaling Descriptive terms in Embryology

More information

Biology 224 Human Anatomy and Physiology - II Week 1; Lecture 1; Monday Dr. Stuart S. Sumida. Review of Early Development of Humans.

Biology 224 Human Anatomy and Physiology - II Week 1; Lecture 1; Monday Dr. Stuart S. Sumida. Review of Early Development of Humans. Biology 224 Human Anatomy and Physiology - II Week 1; Lecture 1; Monday Dr. Stuart S. Sumida Review of Early Development of Humans Special Senses Review: Historical and Developmental Perspectives Ontogeny

More information

Essential knowledge 1.A.2: Natural selection

Essential knowledge 1.A.2: Natural selection Appendix C AP Biology Concepts at a Glance Big Idea 1: The process of evolution drives the diversity and unity of life. Enduring understanding 1.A: Change in the genetic makeup of a population over time

More information

A SEARCH FOR QUANTITATIVE TRAIT LOCI AFFECTING ASYMMETRY OF MANDIBULAR CHARACTERS IN MICE

A SEARCH FOR QUANTITATIVE TRAIT LOCI AFFECTING ASYMMETRY OF MANDIBULAR CHARACTERS IN MICE Evolution. 51(3). 1997. pp. 957-969 A SEARCH FOR QUANTITATIVE TRAIT LOCI AFFECTING ASYMMETRY OF MANDIBULAR CHARACTERS IN MICE LARRY J. LEAMY,l ERIC J. ROUTMAN,2 AND JAMES M. CHEVERUD J I Department of

More information

Partitioning Genetic Variance

Partitioning Genetic Variance PSYC 510: Partitioning Genetic Variance (09/17/03) 1 Partitioning Genetic Variance Here, mathematical models are developed for the computation of different types of genetic variance. Several substantive

More information

MS-LS3-1 Heredity: Inheritance and Variation of Traits

MS-LS3-1 Heredity: Inheritance and Variation of Traits MS-LS3-1 Heredity: Inheritance and Variation of Traits MS-LS3-1. Develop and use a model to describe why structural changes to genes (mutations) located on chromosomes may affect proteins and may result

More information

Patterns of inheritance

Patterns of inheritance Patterns of inheritance Learning goals By the end of this material you would have learnt about: How traits and characteristics are passed on from one generation to another The different patterns of inheritance

More information

G E INTERACTION USING JMP: AN OVERVIEW

G E INTERACTION USING JMP: AN OVERVIEW G E INTERACTION USING JMP: AN OVERVIEW Sukanta Dash I.A.S.R.I., Library Avenue, New Delhi-110012 sukanta@iasri.res.in 1. Introduction Genotype Environment interaction (G E) is a common phenomenon in agricultural

More information

C3020 Molecular Evolution. Exercises #3: Phylogenetics

C3020 Molecular Evolution. Exercises #3: Phylogenetics C3020 Molecular Evolution Exercises #3: Phylogenetics Consider the following sequences for five taxa 1-5 and the known outgroup O, which has the ancestral states (note that sequence 3 has changed from

More information

Chapter 1. The Human Organism 1-1

Chapter 1. The Human Organism 1-1 Chapter 1 The Human Organism 1-1 Overview of Anatomy and Physiology Anatomy: Scientific discipline that investigates the body s structure Physiology: Scientific investigation of the processes or functions

More information

Evolution and the Genetics of Structured populations. Charles Goodnight Department of Biology University of Vermont

Evolution and the Genetics of Structured populations. Charles Goodnight Department of Biology University of Vermont Evolution and the Genetics of Structured populations Charles Goodnight Department of Biology University of Vermont Outline What is Evolution Evolution and the Reductionist Approach Fisher/Wright Controversy

More information

Principles of Experimental Embryology

Principles of Experimental Embryology Biology 4361 Developmental Biology Principles of Experimental Embryology June 16, 2008 Overview What forces affect embryonic development? The embryonic environment: external and internal How do forces

More information

5. Best Linear Unbiased Prediction

5. Best Linear Unbiased Prediction 5. Best Linear Unbiased Prediction Julius van der Werf Lecture 1: Best linear unbiased prediction Learning objectives On completion of Lecture 1 you should be able to: Understand the principle of mixed

More information

Developmental Zoology. Ectodermal derivatives (ZOO ) Developmental Stages. Developmental Stages

Developmental Zoology. Ectodermal derivatives (ZOO ) Developmental Stages. Developmental Stages Developmental Zoology (ZOO 228.1.0) Ectodermal derivatives 1 Developmental Stages Ø Early Development Fertilization Cleavage Gastrulation Neurulation Ø Later Development Organogenesis Larval molts Metamorphosis

More information

Name: Hour: Teacher: ROZEMA. Inheritance & Mutations Connected to Speciation

Name: Hour: Teacher: ROZEMA. Inheritance & Mutations Connected to Speciation Name: Hour: Teacher: ROZEMA Inheritance & Mutations Connected to Speciation Let s Review What We Already Know: What Have We Learned? Lesson 26: PI 1 (Projected Image) - Human Karyotype (image from https://en.wikipedia.org/wiki/karyotype#/media/file:nhgri_human_male_karyotype.png)

More information

Association Testing with Quantitative Traits: Common and Rare Variants. Summer Institute in Statistical Genetics 2014 Module 10 Lecture 5

Association Testing with Quantitative Traits: Common and Rare Variants. Summer Institute in Statistical Genetics 2014 Module 10 Lecture 5 Association Testing with Quantitative Traits: Common and Rare Variants Timothy Thornton and Katie Kerr Summer Institute in Statistical Genetics 2014 Module 10 Lecture 5 1 / 41 Introduction to Quantitative

More information

Genetics, brain development, and behavior

Genetics, brain development, and behavior Genetics, brain development, and behavior Jan. 13, 2004 Questions: Does it make sense to talk about genes for behavior? How do genes turn into brains? Can environment affect development before birth? What

More information

STUDY GUIDE SECTION 1-1 THE WORLD OF BIOLOGY

STUDY GUIDE SECTION 1-1 THE WORLD OF BIOLOGY STUDY GUIDE SECTION 1-1 THE WORLD OF BIOLOGY Multiple Choice-Write the correct letter in the blank. Name Period Date 1. A short segment of DNA that contains instructions for the development of a single

More information

THE WORLD OF BIOLOGY SECTION 1-1 REVIEW. VOCABULARY REVIEW Define the following terms. MULTIPLE CHOICE Write the correct letter in the blank.

THE WORLD OF BIOLOGY SECTION 1-1 REVIEW. VOCABULARY REVIEW Define the following terms. MULTIPLE CHOICE Write the correct letter in the blank. SECTION 1-1 REVIEW THE WORLD OF BIOLOGY VOCABULARY REVIEW Define the following terms. 1. development 2. reproduction 3. organ 4. tissue MULTIPLE CHOICE Write the correct letter in the blank. 1. Biology

More information

Paraxial and Intermediate Mesoderm

Paraxial and Intermediate Mesoderm Biology 4361 Paraxial and Intermediate Mesoderm December 6, 2007 Mesoderm Formation Chick Major Mesoderm Lineages Mesodermal subdivisions are specified along a mediolateral axis by increasing amounts of

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature25973 Power Simulations We performed extensive power simulations to demonstrate that the analyses carried out in our study are well powered. Our simulations indicate very high power for

More information

Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2012 University of California, Berkeley

Integrative Biology 200A PRINCIPLES OF PHYLOGENETICS Spring 2012 University of California, Berkeley Integrative Biology 200A "PRINCIPLES OF PHYLOGENETICS" Spring 2012 University of California, Berkeley B.D. Mishler Feb. 7, 2012. Morphological data IV -- ontogeny & structure of plants The last frontier

More information

GBLUP and G matrices 1

GBLUP and G matrices 1 GBLUP and G matrices 1 GBLUP from SNP-BLUP We have defined breeding values as sum of SNP effects:! = #$ To refer breeding values to an average value of 0, we adopt the centered coding for genotypes described

More information

Evolution of phenotypic traits

Evolution of phenotypic traits Quantitative genetics Evolution of phenotypic traits Very few phenotypic traits are controlled by one locus, as in our previous discussion of genetics and evolution Quantitative genetics considers characters

More information

Interest Grabber. Analyzing Inheritance

Interest Grabber. Analyzing Inheritance Interest Grabber Section 11-1 Analyzing Inheritance Offspring resemble their parents. Offspring inherit genes for characteristics from their parents. To learn about inheritance, scientists have experimented

More information

Name Class Date. KEY CONCEPT Gametes have half the number of chromosomes that body cells have.

Name Class Date. KEY CONCEPT Gametes have half the number of chromosomes that body cells have. Section 1: Chromosomes and Meiosis KEY CONCEPT Gametes have half the number of chromosomes that body cells have. VOCABULARY somatic cell autosome fertilization gamete sex chromosome diploid homologous

More information

Overview of clustering analysis. Yuehua Cui

Overview of clustering analysis. Yuehua Cui Overview of clustering analysis Yuehua Cui Email: cuiy@msu.edu http://www.stt.msu.edu/~cui A data set with clear cluster structure How would you design an algorithm for finding the three clusters in this

More information

Developmental Biology Lecture Outlines

Developmental Biology Lecture Outlines Developmental Biology Lecture Outlines Lecture 01: Introduction Course content Developmental Biology Obsolete hypotheses Current theory Lecture 02: Gametogenesis Spermatozoa Spermatozoon function Spermatozoon

More information

DNA polymorphisms such as SNP and familial effects (additive genetic, common environment) to

DNA polymorphisms such as SNP and familial effects (additive genetic, common environment) to 1 1 1 1 1 1 1 1 0 SUPPLEMENTARY MATERIALS, B. BIVARIATE PEDIGREE-BASED ASSOCIATION ANALYSIS Introduction We propose here a statistical method of bivariate genetic analysis, designed to evaluate contribution

More information

Head and Face Development

Head and Face Development Head and Face Development Resources: http://php.med.unsw.edu.au/embryology/ Larsen s Human Embryology The Developing Human: Clinically Oriented Embryology Dr Annemiek Beverdam School of Medical Sciences,

More information

Cranial integration and modularity: insights into evolution and development from morphometric data

Cranial integration and modularity: insights into evolution and development from morphometric data Published by Associazione Teriologica Italiana Volume 24 (1): 43 58, 2013 Hystrix, the Italian Journal of Mammalogy Available online at: http://www.italian-journal-of-mammalogy.it/article/view/6367/pdf

More information