How do synapses transform inputs?

Size: px
Start display at page:

Download "How do synapses transform inputs?"

Transcription

1 Neurons to networks

2 How do synapses transform inputs?

3 Excitatory synapse Input spike! Neurotransmitter release binds to/opens Na channels Change in synaptic conductance! Na+ influx E.g. AMA synapse! Depolarization due to ES (excitatory postsynaptic potential) Vocab: Depolarization means make V less neg = more positive

4 Inhibitory synapse Input spike! Neurotransmitter release binds to/opens K channels Change in synaptic conductance K+ leaves cell! Hyperpolarization due to IS (inhibitory postsynaptic potential) Vocab: hyperpolarization means make V more negative

5 Modeling a synaptic input to a (RC) neuron Synaptic conductance V R

6 Modeling a synaptic input to a (RC) neuron Synaptic conductance V R robability of postsynaptic channel opening (= fraction of channels opened) robability of transmitter release given an input spike

7 Basic synapse model Assume rel = 1 (for now) What does a single spike input do to s? Kinetic model: closed αs open d dt s = α (1 ) β s open s βs s s closed Fraction of channels open Opening rate Closing rate Fraction of channels closed here:

8 Synaptic filters Exponential Difference of exponentials A difference of exponentials model better fits biological data for GABA, NMDA synapse types

9 Simplified synaptic models Difference of exponentials: s s τ1 τ 2 ( t) = const ( e e max t t ) t Alpha function: s ( t) = const τ t peak e τ t peak

10 What happens with a sequence of input spikes? Biological synapses are dynamic! Short-term facilitation Short-term depression Input (Markram & Tsodyks, 1998)

11 Short-term synaptic plasticity: describe this via _rel Recall definition of synaptic conductance: g s = g s, max rel Idea: Specify how rel changes as a function of consecutive input spikes s Input τ d dt rel If input spike: f rel = 0 D rel rel Between input spikes, rel decays exponentially back to 0 depression: decrement rel [sketch on board] Abbott et al 1997

12

13 Lab exercise: Write a code that implements the Abbott et al mechanism for synaptic depression. Drive the synapse with spikes occurring regularly at 20 Hz, as in Fig. 1A of Abbott et al 97. Can you reproduce that figure? Hint: this should be a few lines of code.

14 Impact of synaptic depression Key result (a few lines of calculation, see (7) in paper [ESB notes]): If synapse receives input spikes at rate r, then the steady state value of _rel (r) ~ 1/r

15 Consequences of synaptic depression: steady state depression average transmission rate At steady state, Constant synaptic input for Wide range of inputs! Steady-state gain control Input Rate average release probability

16 Consequences of synaptic depression: dynamic response Input rates r Steady-state transmission rates are similar for different rates Transient inputs are amplified relative to steady-state inputs In fact: an equal-percent change from baseline gives an equal transient response. Who cares? Abbott et al 97: Neuron gets inputs from 1000 s of upstream cells, each of which fires at Hz. How can we be responsive to all? Synaptic depression yields gain control to satisfy this. vs. Adaptation or inhibition, does so in an INUT-SECIFIC way!

17 Extending the model to include facilitation Recall definition of synaptic conductance: g s = g s, max rel s If input spike: f rel rel D rel rel + f 1 F ( rel ) depression: decrement rel facilitation: increment rel Between input spikes, rel still decays exponentially back to 0 Abbott et al 1997

18 Effects of synaptic facilitation & depression facilitation depression average release probability Input Rate average transmission rate Input Rate

19 More detailed plasticity model Incoming spike activates a fraction of recovered resources R to become effective (E) Amount of effective resources E govern size of gs(t) Effective resources rapidly inactivate (msec) Inactivated recover (100s of msec) E(t) determines postsynaptic current I R E Markram and Tsodyks, NAS 1997

20 Match between model and experiment

21 Summary: Synapses provide an additional layer of dynamics and computation, beyond that occurring in single neurons!

22 <latexit sha1_base64="vwxcx+hqs5jbnkg+iuk0ee0uai=">aaacenicbvbnswmxfmzwr1q/qh69bitqfcpwbugfl14rodaqrss2ttbpk12l+stujb+by/+fs8evlx68ua/md32ok0dgwhmv5m/fhwdbb9beuwfpewv/krhbx1jc2t4vbovy4srzldixgppk80ezxkdnaqrbkrrqqvwmmfxi/9xgntmkfhhqxj5krsdxnakqejecujhsyjebxfyg1cerwmh/gyt3uivt5uecnvj7dy+kb2iiw7ymfa86q6jsu0rd0rfru7eu0kc4ekonwrasfgpkqbp4kncu1es5jqaemylqehkuy7azzpha+m0sfbpmwlawfq742usk2h0jetkkbz3pj8t+vlubw7qzzbbbsyaegergic4id7hifmtqeeivn3/ftecuowbqljgsqror54lzurmo2lenpdrvti082k7qiyq6azv0a2qiwdr9iie0st6s56sf+vd+pim5qzpzi76a+vzb/l3nic=</latexit> <latexit sha1_base64="drh0qscssgx/uqozx8tqszhi5w=">aaacexicbvdlssnafj3uv62vqes3g0vof5zebhuhfn24rgbtos1hmpm0qyczm6eevinbvwvny5u3lpz5984tbq1gmdh3u5c45biy4asv6nkplyyura+x1ysbm1vaoubt3r6jeutamkyhk1ywkcr6ynnaqrbtlrgjxsi47vp76nqcmfy/co5jebbcqych9tgloythrfsaj7vus0ntd0ufz6kggl7ffwzyme3b4hr9dceswg0rb14kdkgqqedlmb/6xkstgivabvgqz1sxdfiigvbsko/uswmdeygrkdpsakmbmkekcnhwvgwh0n9qsc5+nsjjyfsk8dvkwgbkzr3puj/xi8b/3yq5tfysgeh/ergic0h+xxysiiisaesq7/iumi6hpat1jrjdjzkrdj+6rx0bbut6vnq6knmjpah6igbhsgmuggtvabufsinterejoejbfj3fiyjzamymcf/yhx+qoljzx</latexit> <latexit sha1_base64="tdxq+rimmeuvg1mwen4umd0gch8=">aaab7hicbvbns8naej34wetx1aoxxslus0lfug9flx4rmlbqhrlzbtq1m03ynqgl9d948adi1r/kzx/jts1bwx8mn6bywzekehh0hw/nzxvtfwnzcjwcxtnd2+/dhdynhgqgfdylgddqjhuijuoudj24nmnaokbwwj26nfeulaifg94djhfkqhsoscubrsu/debc96pbjbdwcgy6swkzlkarkx91+znkik2ssgtopuqn6gduomostyjc1kfsrae8y6mietd+nrt2qk6t0idhrg0pjd190rgi2guwa7i4pds+hnxf+8torhlz8jlatifzsvclnjmcbt10lfam5qji2htat7k2fdqildg1drhlbbfhmzeofv66p7f1gu3+rpfoaytqacnbieotxbazxg8aj8apvtuy8oo/ox7x1xclnjuanm8fyceoia==</latexit> Network computation via simplified firing rate models Stimulus x t W, connection weight matrix h t W_ij = weight from j to i y t Function neuron (or neural population) i fires with rate r i (t) neuron (or neural population) i receives input input i = stim i (t)+ X j W ij r j (t) DYNAMICS: rates approach steady states f(input) f(input) dr i dt = f(input i) r i input

Synaptic dynamics. John D. Murray. Synaptic currents. Simple model of the synaptic gating variable. First-order kinetics

Synaptic dynamics. John D. Murray. Synaptic currents. Simple model of the synaptic gating variable. First-order kinetics Synaptic dynamics John D. Murray A dynamical model for synaptic gating variables is presented. We use this to study the saturation of synaptic gating at high firing rate. Shunting inhibition and the voltage

More information

Biological Modeling of Neural Networks

Biological Modeling of Neural Networks Week 4 part 2: More Detail compartmental models Biological Modeling of Neural Networks Week 4 Reducing detail - Adding detail 4.2. Adding detail - apse -cable equat Wulfram Gerstner EPFL, Lausanne, Switzerland

More information

Basic elements of neuroelectronics -- membranes -- ion channels -- wiring. Elementary neuron models -- conductance based -- modelers alternatives

Basic elements of neuroelectronics -- membranes -- ion channels -- wiring. Elementary neuron models -- conductance based -- modelers alternatives Computing in carbon Basic elements of neuroelectronics -- membranes -- ion channels -- wiring Elementary neuron models -- conductance based -- modelers alternatives Wiring neurons together -- synapses

More information

Supporting Online Material for

Supporting Online Material for www.sciencemag.org/cgi/content/full/319/5869/1543/dc1 Supporting Online Material for Synaptic Theory of Working Memory Gianluigi Mongillo, Omri Barak, Misha Tsodyks* *To whom correspondence should be addressed.

More information

Chapter 37 Active Reading Guide Neurons, Synapses, and Signaling

Chapter 37 Active Reading Guide Neurons, Synapses, and Signaling Name: AP Biology Mr. Croft Section 1 1. What is a neuron? Chapter 37 Active Reading Guide Neurons, Synapses, and Signaling 2. Neurons can be placed into three groups, based on their location and function.

More information

Synapse Model. Neurotransmitter is released into cleft between axonal button and dendritic spine

Synapse Model. Neurotransmitter is released into cleft between axonal button and dendritic spine Synapse Model Neurotransmitter is released into cleft between axonal button and dendritic spine Binding and unbinding are modeled by first-order kinetics Concentration must exceed receptor affinity 2 MorphSynapse.nb

More information

Consider the following spike trains from two different neurons N1 and N2:

Consider the following spike trains from two different neurons N1 and N2: About synchrony and oscillations So far, our discussions have assumed that we are either observing a single neuron at a, or that neurons fire independent of each other. This assumption may be correct in

More information

Synaptic Input. Linear Model of Synaptic Transmission. Professor David Heeger. September 5, 2000

Synaptic Input. Linear Model of Synaptic Transmission. Professor David Heeger. September 5, 2000 Synaptic Input Professor David Heeger September 5, 2000 The purpose of this handout is to go a bit beyond the discussion in Ch. 6 of The Book of Genesis on synaptic input, and give some examples of how

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION Figure S1 Multiplicative scaling of the granule cell input-output relation is not dependent on input rate. Input-output relations with short-term depression (STD) from Fig. 1d after normalizing by the

More information

9 Generation of Action Potential Hodgkin-Huxley Model

9 Generation of Action Potential Hodgkin-Huxley Model 9 Generation of Action Potential Hodgkin-Huxley Model (based on chapter 12, W.W. Lytton, Hodgkin-Huxley Model) 9.1 Passive and active membrane models In the previous lecture we have considered a passive

More information

Nervous Systems: Neuron Structure and Function

Nervous Systems: Neuron Structure and Function Nervous Systems: Neuron Structure and Function Integration An animal needs to function like a coherent organism, not like a loose collection of cells. Integration = refers to processes such as summation

More information

Emergence of resonances in neural systems: the interplay between adaptive threshold and short-term synaptic plasticity

Emergence of resonances in neural systems: the interplay between adaptive threshold and short-term synaptic plasticity Emergence of resonances in neural systems: the interplay between adaptive threshold and short-term synaptic plasticity Jorge F. Mejias 1,2 and Joaquín J. Torres 2 1 Department of Physics and Center for

More information

Decoding. How well can we learn what the stimulus is by looking at the neural responses?

Decoding. How well can we learn what the stimulus is by looking at the neural responses? Decoding How well can we learn what the stimulus is by looking at the neural responses? Two approaches: devise explicit algorithms for extracting a stimulus estimate directly quantify the relationship

More information

Nervous Tissue. Neurons Electrochemical Gradient Propagation & Transduction Neurotransmitters Temporal & Spatial Summation

Nervous Tissue. Neurons Electrochemical Gradient Propagation & Transduction Neurotransmitters Temporal & Spatial Summation Nervous Tissue Neurons Electrochemical Gradient Propagation & Transduction Neurotransmitters Temporal & Spatial Summation What is the function of nervous tissue? Maintain homeostasis & respond to stimuli

More information

Adaptation in the Neural Code of the Retina

Adaptation in the Neural Code of the Retina Adaptation in the Neural Code of the Retina Lens Retina Fovea Optic Nerve Optic Nerve Bottleneck Neurons Information Receptors: 108 95% Optic Nerve 106 5% After Polyak 1941 Visual Cortex ~1010 Mean Intensity

More information

Introduction to Neural Networks U. Minn. Psy 5038 Spring, 1999 Daniel Kersten. Lecture 2a. The Neuron - overview of structure. From Anderson (1995)

Introduction to Neural Networks U. Minn. Psy 5038 Spring, 1999 Daniel Kersten. Lecture 2a. The Neuron - overview of structure. From Anderson (1995) Introduction to Neural Networks U. Minn. Psy 5038 Spring, 1999 Daniel Kersten Lecture 2a The Neuron - overview of structure From Anderson (1995) 2 Lect_2a_Mathematica.nb Basic Structure Information flow:

More information

Nerve Signal Conduction. Resting Potential Action Potential Conduction of Action Potentials

Nerve Signal Conduction. Resting Potential Action Potential Conduction of Action Potentials Nerve Signal Conduction Resting Potential Action Potential Conduction of Action Potentials Resting Potential Resting neurons are always prepared to send a nerve signal. Neuron possesses potential energy

More information

Neurophysiology. Danil Hammoudi.MD

Neurophysiology. Danil Hammoudi.MD Neurophysiology Danil Hammoudi.MD ACTION POTENTIAL An action potential is a wave of electrical discharge that travels along the membrane of a cell. Action potentials are an essential feature of animal

More information

Spike-Frequency Adaptation: Phenomenological Model and Experimental Tests

Spike-Frequency Adaptation: Phenomenological Model and Experimental Tests Spike-Frequency Adaptation: Phenomenological Model and Experimental Tests J. Benda, M. Bethge, M. Hennig, K. Pawelzik & A.V.M. Herz February, 7 Abstract Spike-frequency adaptation is a common feature of

More information

Chapter 9. Nerve Signals and Homeostasis

Chapter 9. Nerve Signals and Homeostasis Chapter 9 Nerve Signals and Homeostasis A neuron is a specialized nerve cell that is the functional unit of the nervous system. Neural signaling communication by neurons is the process by which an animal

More information

This script will produce a series of pulses of amplitude 40 na, duration 1ms, recurring every 50 ms.

This script will produce a series of pulses of amplitude 40 na, duration 1ms, recurring every 50 ms. 9.16 Problem Set #4 In the final problem set you will combine the pieces of knowledge gained in the previous assignments to build a full-blown model of a plastic synapse. You will investigate the effects

More information

Structure and Measurement of the brain lecture notes

Structure and Measurement of the brain lecture notes Structure and Measurement of the brain lecture notes Marty Sereno 2009/2010!"#$%&'(&#)*%$#&+,'-&.)"/*"&.*)*-'(0&1223 Neurons and Models Lecture 1 Topics Membrane (Nernst) Potential Action potential/voltage-gated

More information

Nervous Tissue. Neurons Neural communication Nervous Systems

Nervous Tissue. Neurons Neural communication Nervous Systems Nervous Tissue Neurons Neural communication Nervous Systems What is the function of nervous tissue? Maintain homeostasis & respond to stimuli Sense & transmit information rapidly, to specific cells and

More information

Action Potentials and Synaptic Transmission Physics 171/271

Action Potentials and Synaptic Transmission Physics 171/271 Action Potentials and Synaptic Transmission Physics 171/271 Flavio Fröhlich (flavio@salk.edu) September 27, 2006 In this section, we consider two important aspects concerning the communication between

More information

Biosciences in the 21st century

Biosciences in the 21st century Biosciences in the 21st century Lecture 1: Neurons, Synapses, and Signaling Dr. Michael Burger Outline: 1. Why neuroscience? 2. The neuron 3. Action potentials 4. Synapses 5. Organization of the nervous

More information

9 Generation of Action Potential Hodgkin-Huxley Model

9 Generation of Action Potential Hodgkin-Huxley Model 9 Generation of Action Potential Hodgkin-Huxley Model (based on chapter 2, W.W. Lytton, Hodgkin-Huxley Model) 9. Passive and active membrane models In the previous lecture we have considered a passive

More information

Neuron. Detector Model. Understanding Neural Components in Detector Model. Detector vs. Computer. Detector. Neuron. output. axon

Neuron. Detector Model. Understanding Neural Components in Detector Model. Detector vs. Computer. Detector. Neuron. output. axon Neuron Detector Model 1 The detector model. 2 Biological properties of the neuron. 3 The computational unit. Each neuron is detecting some set of conditions (e.g., smoke detector). Representation is what

More information

Integration of synaptic inputs in dendritic trees

Integration of synaptic inputs in dendritic trees Integration of synaptic inputs in dendritic trees Theoretical Neuroscience Fabrizio Gabbiani Division of Neuroscience Baylor College of Medicine One Baylor Plaza Houston, TX 77030 e-mail:gabbiani@bcm.tmc.edu

More information

3 Detector vs. Computer

3 Detector vs. Computer 1 Neurons 1. The detector model. Also keep in mind this material gets elaborated w/the simulations, and the earliest material is often hardest for those w/primarily psych background. 2. Biological properties

More information

Mathematical Foundations of Neuroscience - Lecture 3. Electrophysiology of neurons - continued

Mathematical Foundations of Neuroscience - Lecture 3. Electrophysiology of neurons - continued Mathematical Foundations of Neuroscience - Lecture 3. Electrophysiology of neurons - continued Filip Piękniewski Faculty of Mathematics and Computer Science, Nicolaus Copernicus University, Toruń, Poland

More information

Electrical Signaling. Lecture Outline. Using Ions as Messengers. Potentials in Electrical Signaling

Electrical Signaling. Lecture Outline. Using Ions as Messengers. Potentials in Electrical Signaling Lecture Outline Electrical Signaling Using ions as messengers Potentials in electrical signaling Action Graded Other electrical signaling Gap junctions The neuron Using Ions as Messengers Important things

More information

لجنة الطب البشري رؤية تنير دروب تميزكم

لجنة الطب البشري رؤية تنير دروب تميزكم 1) Hyperpolarization phase of the action potential: a. is due to the opening of voltage-gated Cl channels. b. is due to prolonged opening of voltage-gated K + channels. c. is due to closure of the Na +

More information

MEMBRANE POTENTIALS AND ACTION POTENTIALS:

MEMBRANE POTENTIALS AND ACTION POTENTIALS: University of Jordan Faculty of Medicine Department of Physiology & Biochemistry Medical students, 2017/2018 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Review: Membrane physiology

More information

Information processing. Divisions of nervous system. Neuron structure and function Synapse. Neurons, synapses, and signaling 11/3/2017

Information processing. Divisions of nervous system. Neuron structure and function Synapse. Neurons, synapses, and signaling 11/3/2017 Neurons, synapses, and signaling Chapter 48 Information processing Divisions of nervous system Central nervous system (CNS) Brain and a nerve cord Integration center Peripheral nervous system (PNS) Nerves

More information

Quantitative Electrophysiology

Quantitative Electrophysiology ECE 795: Quantitative Electrophysiology Notes for Lecture #4 Wednesday, October 4, 2006 7. CHEMICAL SYNAPSES AND GAP JUNCTIONS We will look at: Chemical synapses in the nervous system Gap junctions in

More information

Biology September 2015 Exam One FORM G KEY

Biology September 2015 Exam One FORM G KEY Biology 251 17 September 2015 Exam One FORM G KEY PRINT YOUR NAME AND ID NUMBER in the space that is provided on the answer sheet, and then blacken the letter boxes below the corresponding letters of your

More information

Biology September 2015 Exam One FORM W KEY

Biology September 2015 Exam One FORM W KEY Biology 251 17 September 2015 Exam One FORM W KEY PRINT YOUR NAME AND ID NUMBER in the space that is provided on the answer sheet, and then blacken the letter boxes below the corresponding letters of your

More information

1 Balanced networks: Trading speed for noise

1 Balanced networks: Trading speed for noise Physics 178/278 - David leinfeld - Winter 2017 (Corrected yet incomplete notes) 1 Balanced networks: Trading speed for noise 1.1 Scaling of neuronal inputs An interesting observation is that the subthresold

More information

CSE/NB 528 Final Lecture: All Good Things Must. CSE/NB 528: Final Lecture

CSE/NB 528 Final Lecture: All Good Things Must. CSE/NB 528: Final Lecture CSE/NB 528 Final Lecture: All Good Things Must 1 Course Summary Where have we been? Course Highlights Where do we go from here? Challenges and Open Problems Further Reading 2 What is the neural code? What

More information

Organization of the nervous system. Tortora & Grabowski Principles of Anatomy & Physiology; Page 388, Figure 12.2

Organization of the nervous system. Tortora & Grabowski Principles of Anatomy & Physiology; Page 388, Figure 12.2 Nervous system Organization of the nervous system Tortora & Grabowski Principles of Anatomy & Physiology; Page 388, Figure 12.2 Autonomic and somatic efferent pathways Reflex arc - a neural pathway that

More information

Broadband coding with dynamic synapses

Broadband coding with dynamic synapses Broadband coding with dynamic synapses Benjamin Lindner Max-Planck-Institute for the Physics of Complex Systems, Nöthnitzer Str. 38 1187 Dresden, Germany André Longtin Department of Physics and Center

More information

Topics in Neurophysics

Topics in Neurophysics Topics in Neurophysics Alex Loebel, Martin Stemmler and Anderas Herz Exercise 2 Solution (1) The Hodgkin Huxley Model The goal of this exercise is to simulate the action potential according to the model

More information

Exercises. Chapter 1. of τ approx that produces the most accurate estimate for this firing pattern.

Exercises. Chapter 1. of τ approx that produces the most accurate estimate for this firing pattern. 1 Exercises Chapter 1 1. Generate spike sequences with a constant firing rate r 0 using a Poisson spike generator. Then, add a refractory period to the model by allowing the firing rate r(t) to depend

More information

Biological Modeling of Neural Networks:

Biological Modeling of Neural Networks: Week 14 Dynamics and Plasticity 14.1 Reservoir computing - Review:Random Networks - Computing with rich dynamics Biological Modeling of Neural Networks: 14.2 Random Networks - stationary state - chaos

More information

Resting Distribution of Ions in Mammalian Neurons. Outside Inside (mm) E ion Permab. K Na Cl

Resting Distribution of Ions in Mammalian Neurons. Outside Inside (mm) E ion Permab. K Na Cl Resting Distribution of Ions in Mammalian Neurons Outside Inside (mm) E ion Permab. K + 5 100-81 1.0 150 15 +62 0.04 Cl - 100 10-62 0.045 V m = -60 mv V m approaches the Equilibrium Potential of the most

More information

Membrane Potentials, Action Potentials, and Synaptic Transmission. Membrane Potential

Membrane Potentials, Action Potentials, and Synaptic Transmission. Membrane Potential Cl Cl - - + K + K+ K + K Cl - 2/2/15 Membrane Potentials, Action Potentials, and Synaptic Transmission Core Curriculum II Spring 2015 Membrane Potential Example 1: K +, Cl - equally permeant no charge

More information

Channels can be activated by ligand-binding (chemical), voltage change, or mechanical changes such as stretch.

Channels can be activated by ligand-binding (chemical), voltage change, or mechanical changes such as stretch. 1. Describe the basic structure of an ion channel. Name 3 ways a channel can be "activated," and describe what occurs upon activation. What are some ways a channel can decide what is allowed to pass through?

More information

Chapter 48 Neurons, Synapses, and Signaling

Chapter 48 Neurons, Synapses, and Signaling Chapter 48 Neurons, Synapses, and Signaling Concept 48.1 Neuron organization and structure reflect function in information transfer Neurons are nerve cells that transfer information within the body Neurons

More information

DISCRETE EVENT SIMULATION IN THE NEURON ENVIRONMENT

DISCRETE EVENT SIMULATION IN THE NEURON ENVIRONMENT Hines and Carnevale: Discrete event simulation in the NEURON environment Page 1 Preprint of a manuscript that will be published in Neurocomputing. DISCRETE EVENT SIMULATION IN THE NEURON ENVIRONMENT Abstract

More information

Outline. Neural dynamics with log-domain integrator circuits. Where it began Biophysics of membrane channels

Outline. Neural dynamics with log-domain integrator circuits. Where it began Biophysics of membrane channels Outline Neural dynamics with log-domain integrator circuits Giacomo Indiveri Neuromorphic Cognitive Systems group Institute of Neuroinformatics niversity of Zurich and ETH Zurich Dynamics of Multi-function

More information

Lecture 11 : Simple Neuron Models. Dr Eileen Nugent

Lecture 11 : Simple Neuron Models. Dr Eileen Nugent Lecture 11 : Simple Neuron Models Dr Eileen Nugent Reading List Nelson, Biological Physics, Chapter 12 Phillips, PBoC, Chapter 17 Gerstner, Neuronal Dynamics: from single neurons to networks and models

More information

Neural Conduction. biologyaspoetry.com

Neural Conduction. biologyaspoetry.com Neural Conduction biologyaspoetry.com Resting Membrane Potential -70mV A cell s membrane potential is the difference in the electrical potential ( charge) between the inside and outside of the cell. The

More information

Neurons, Synapses, and Signaling

Neurons, Synapses, and Signaling Chapter 48 Neurons, Synapses, and Signaling PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions

More information

How and why neurons fire

How and why neurons fire How and why neurons fire 1 Neurophysiological Background The Neuron Contents: Structure Electrical Mebrane Properties Ion Channels Actionpotential Signal Propagation Synaptic Transission 2 Structure of

More information

Control and Integration. Nervous System Organization: Bilateral Symmetric Animals. Nervous System Organization: Radial Symmetric Animals

Control and Integration. Nervous System Organization: Bilateral Symmetric Animals. Nervous System Organization: Radial Symmetric Animals Control and Integration Neurophysiology Chapters 10-12 Nervous system composed of nervous tissue cells designed to conduct electrical impulses rapid communication to specific cells or groups of cells Endocrine

More information

Balance of Electric and Diffusion Forces

Balance of Electric and Diffusion Forces Balance of Electric and Diffusion Forces Ions flow into and out of the neuron under the forces of electricity and concentration gradients (diffusion). The net result is a electric potential difference

More information

Basic elements of neuroelectronics -- membranes -- ion channels -- wiring

Basic elements of neuroelectronics -- membranes -- ion channels -- wiring Computing in carbon Basic elements of neuroelectronics -- membranes -- ion channels -- wiring Elementary neuron models -- conductance based -- modelers alternatives Wires -- signal propagation -- processing

More information

Neurons and Nervous Systems

Neurons and Nervous Systems 34 Neurons and Nervous Systems Concept 34.1 Nervous Systems Consist of Neurons and Glia Nervous systems have two categories of cells: Neurons, or nerve cells, are excitable they generate and transmit electrical

More information

An Efficient Method for Computing Synaptic Conductances Based on a Kinetic Model of Receptor Binding

An Efficient Method for Computing Synaptic Conductances Based on a Kinetic Model of Receptor Binding NOTE Communicated by Michael Hines An Efficient Method for Computing Synaptic Conductances Based on a Kinetic Model of Receptor Binding A. Destexhe Z. F. Mainen T. J. Sejnowski The Howard Hughes Medical

More information

Physiology Unit 2. MEMBRANE POTENTIALS and SYNAPSES

Physiology Unit 2. MEMBRANE POTENTIALS and SYNAPSES Physiology Unit 2 MEMBRANE POTENTIALS and SYNAPSES Neuron Communication Neurons are stimulated by receptors on dendrites and cell bodies (soma) Ligand gated ion channels GPCR s Neurons stimulate cells

More information

Short-Term Synaptic Plasticity and Network Behavior

Short-Term Synaptic Plasticity and Network Behavior LETTER Communicated by Misha Tsodyks Short-Term Synaptic Plasticity and Network Behavior Werner M. Kistler J. Leo van Hemmen Physik-Department der TU München, D-85747 Garching bei München, Germany We develop

More information

Dynamic Stochastic Synapses as Computational Units

Dynamic Stochastic Synapses as Computational Units LETTER Communicated by Laurence Abbott Dynamic Stochastic Synapses as Computational Units Wolfgang Maass Institute for Theoretical Computer Science, Technische Universität Graz, A 8010 Graz, Austria Anthony

More information

Physiology Unit 2. MEMBRANE POTENTIALS and SYNAPSES

Physiology Unit 2. MEMBRANE POTENTIALS and SYNAPSES Physiology Unit 2 MEMBRANE POTENTIALS and SYNAPSES In Physiology Today Ohm s Law I = V/R Ohm s law: the current through a conductor between two points is directly proportional to the voltage across the

More information

Computational Explorations in Cognitive Neuroscience Chapter 2

Computational Explorations in Cognitive Neuroscience Chapter 2 Computational Explorations in Cognitive Neuroscience Chapter 2 2.4 The Electrophysiology of the Neuron Some basic principles of electricity are useful for understanding the function of neurons. This is

More information

Bio 449 Fall Exam points total Multiple choice. As with any test, choose the best answer in each case. Each question is 3 points.

Bio 449 Fall Exam points total Multiple choice. As with any test, choose the best answer in each case. Each question is 3 points. Name: Exam 1 100 points total Multiple choice. As with any test, choose the best answer in each case. Each question is 3 points. 1. The term internal environment, as coined by Clause Bernard, is best defined

More information

Naseem Demeri. Mohammad Alfarra. Mohammad Khatatbeh

Naseem Demeri. Mohammad Alfarra. Mohammad Khatatbeh 7 Naseem Demeri Mohammad Alfarra Mohammad Khatatbeh In the previous lectures, we have talked about how the difference in permeability for ions across the cell membrane can generate a potential. The potential

More information

Membrane Protein Channels

Membrane Protein Channels Membrane Protein Channels Potassium ions queuing up in the potassium channel Pumps: 1000 s -1 Channels: 1000000 s -1 Pumps & Channels The lipid bilayer of biological membranes is intrinsically impermeable

More information

An Introductory Course in Computational Neuroscience

An Introductory Course in Computational Neuroscience An Introductory Course in Computational Neuroscience Contents Series Foreword Acknowledgments Preface 1 Preliminary Material 1.1. Introduction 1.1.1 The Cell, the Circuit, and the Brain 1.1.2 Physics of

More information

neural networks Balázs B Ujfalussy 17 october, 2016 idegrendszeri modellezés 2016 október 17.

neural networks Balázs B Ujfalussy 17 october, 2016 idegrendszeri modellezés 2016 október 17. neural networks Balázs B Ujfalussy 17 october, 2016 Hierarchy of the nervous system behaviour idegrendszeri modellezés 1m CNS 10 cm systems 1 cm maps 1 mm networks 100 μm neurons 1 μm synapses 10 nm molecules

More information

The Neuron - F. Fig. 45.3

The Neuron - F. Fig. 45.3 excite.org(anism): Electrical Signaling The Neuron - F. Fig. 45.3 Today s lecture we ll use clickers Review today 11:30-1:00 in 2242 HJ Patterson Electrical signals Dendrites: graded post-synaptic potentials

More information

CELL BIOLOGY - CLUTCH CH. 9 - TRANSPORT ACROSS MEMBRANES.

CELL BIOLOGY - CLUTCH CH. 9 - TRANSPORT ACROSS MEMBRANES. !! www.clutchprep.com K + K + K + K + CELL BIOLOGY - CLUTCH CONCEPT: PRINCIPLES OF TRANSMEMBRANE TRANSPORT Membranes and Gradients Cells must be able to communicate across their membrane barriers to materials

More information

Dendrites - receives information from other neuron cells - input receivers.

Dendrites - receives information from other neuron cells - input receivers. The Nerve Tissue Neuron - the nerve cell Dendrites - receives information from other neuron cells - input receivers. Cell body - includes usual parts of the organelles of a cell (nucleus, mitochondria)

More information

Propagation& Integration: Passive electrical properties

Propagation& Integration: Passive electrical properties Fundamentals of Neuroscience (NSCS 730, Spring 2010) Instructor: Art Riegel; email: Riegel@musc.edu; Room EL 113; time: 9 11 am Office: 416C BSB (792.5444) Propagation& Integration: Passive electrical

More information

Neurons, Synapses, and Signaling

Neurons, Synapses, and Signaling Chapter 48 Neurons, Synapses, and Signaling PowerPoint Lectures for Biology, Eighth Edition Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp and Janette Lewis Copyright

More information

Neurons, Synapses, and Signaling

Neurons, Synapses, and Signaling Chapter 48 Neurons, Synapses, and Signaling PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions

More information

Overview Organization: Central Nervous System (CNS) Peripheral Nervous System (PNS) innervate Divisions: a. Afferent

Overview Organization: Central Nervous System (CNS) Peripheral Nervous System (PNS) innervate Divisions: a. Afferent Overview Organization: Central Nervous System (CNS) Brain and spinal cord receives and processes information. Peripheral Nervous System (PNS) Nerve cells that link CNS with organs throughout the body.

More information

How to read a burst duration code

How to read a burst duration code Neurocomputing 58 60 (2004) 1 6 www.elsevier.com/locate/neucom How to read a burst duration code Adam Kepecs a;, John Lisman b a Cold Spring Harbor Laboratory, Marks Building, 1 Bungtown Road, Cold Spring

More information

Neurons, Synapses, and Signaling

Neurons, Synapses, and Signaling LECTURE PRESENTATIONS For CAMPBELL BIOLOGY, NINTH EDITION Jane B. Reece, Lisa A. Urry, Michael L. Cain, Steven A. Wasserman, Peter V. Minorsky, Robert B. Jackson Chapter 48 Neurons, Synapses, and Signaling

More information

Frequency Adaptation and Bursting

Frequency Adaptation and Bursting BioE332A Lab 3, 2010 1 Lab 3 January 5, 2010 Frequency Adaptation and Bursting In the last lab, we explored spiking due to sodium channels. In this lab, we explore adaptation and bursting due to potassium

More information

Information Theory and Neuroscience II

Information Theory and Neuroscience II John Z. Sun and Da Wang Massachusetts Institute of Technology October 14, 2009 Outline System Model & Problem Formulation Information Rate Analysis Recap 2 / 23 Neurons Neuron (denoted by j) I/O: via synapses

More information

Processing of Time Series by Neural Circuits with Biologically Realistic Synaptic Dynamics

Processing of Time Series by Neural Circuits with Biologically Realistic Synaptic Dynamics Processing of Time Series by Neural Circuits with iologically Realistic Synaptic Dynamics Thomas Natschläger & Wolfgang Maass Institute for Theoretical Computer Science Technische Universität Graz, ustria

More information

MATH 3104: THE HODGKIN-HUXLEY EQUATIONS

MATH 3104: THE HODGKIN-HUXLEY EQUATIONS MATH 3104: THE HODGKIN-HUXLEY EQUATIONS Parallel conductance model A/Prof Geoffrey Goodhill, Semester 1, 2009 So far we have modelled neuronal membranes by just one resistance (conductance) variable. We

More information

UNIT I INTRODUCTION TO ARTIFICIAL NEURAL NETWORK IT 0469 NEURAL NETWORKS

UNIT I INTRODUCTION TO ARTIFICIAL NEURAL NETWORK IT 0469 NEURAL NETWORKS UNIT I INTRODUCTION TO ARTIFICIAL NEURAL NETWORK IT 0469 NEURAL NETWORKS Elementary Neuro Physiology Neuron: A neuron nerve cell is an electricallyexcitable cell that processes and transmits information

More information

Neural Modeling and Computational Neuroscience. Claudio Gallicchio

Neural Modeling and Computational Neuroscience. Claudio Gallicchio Neural Modeling and Computational Neuroscience Claudio Gallicchio 1 Neuroscience modeling 2 Introduction to basic aspects of brain computation Introduction to neurophysiology Neural modeling: Elements

More information

Investigations of long-term synaptic plasticity have revealed

Investigations of long-term synaptic plasticity have revealed Dynamical model of long-term synaptic plasticity Henry D. I. Abarbanel*, R. Huerta, and M. I. Rabinovich *Marine Physical Laboratory, Scripps Institution of Oceanography, Department of Physics, and Institute

More information

COGNITIVE SCIENCE 107A

COGNITIVE SCIENCE 107A COGNITIVE SCIENCE 107A Electrophysiology: Electrotonic Properties 2 Jaime A. Pineda, Ph.D. The Model Neuron Lab Your PC/CSB115 http://cogsci.ucsd.edu/~pineda/cogs107a/index.html Labs - Electrophysiology

More information

Fast and exact simulation methods applied on a broad range of neuron models

Fast and exact simulation methods applied on a broad range of neuron models Fast and exact simulation methods applied on a broad range of neuron models Michiel D Haene michiel.dhaene@ugent.be Benjamin Schrauwen benjamin.schrauwen@ugent.be Ghent University, Electronics and Information

More information

Nervous system. 3 Basic functions of the nervous system !!!! !!! 1-Sensory. 2-Integration. 3-Motor

Nervous system. 3 Basic functions of the nervous system !!!! !!! 1-Sensory. 2-Integration. 3-Motor Nervous system 3 Basic functions of the nervous system 1-Sensory 2-Integration 3-Motor I. Central Nervous System (CNS) Brain Spinal Cord I. Peripheral Nervous System (PNS) 2) Afferent towards afferent

More information

Ch. 5. Membrane Potentials and Action Potentials

Ch. 5. Membrane Potentials and Action Potentials Ch. 5. Membrane Potentials and Action Potentials Basic Physics of Membrane Potentials Nerve and muscle cells: Excitable Capable of generating rapidly changing electrochemical impulses at their membranes

More information

ACTION POTENTIAL. Dr. Ayisha Qureshi Professor MBBS, MPhil

ACTION POTENTIAL. Dr. Ayisha Qureshi Professor MBBS, MPhil ACTION POTENTIAL Dr. Ayisha Qureshi Professor MBBS, MPhil DEFINITIONS: Stimulus: A stimulus is an external force or event which when applied to an excitable tissue produces a characteristic response. Subthreshold

More information

Fundamentals of the Nervous System and Nervous Tissue

Fundamentals of the Nervous System and Nervous Tissue Chapter 11 Part B Fundamentals of the Nervous System and Nervous Tissue Annie Leibovitz/Contact Press Images PowerPoint Lecture Slides prepared by Karen Dunbar Kareiva Ivy Tech Community College 11.4 Membrane

More information

PNS Chapter 7. Membrane Potential / Neural Signal Processing Spring 2017 Prof. Byron Yu

PNS Chapter 7. Membrane Potential / Neural Signal Processing Spring 2017 Prof. Byron Yu PNS Chapter 7 Membrane Potential 18-698 / 42-632 Neural Signal Processing Spring 2017 Prof. Byron Yu Roadmap Introduction to neuroscience Chapter 1 The brain and behavior Chapter 2 Nerve cells and behavior

More information

1. Neurons & Action Potentials

1. Neurons & Action Potentials Lecture 6, 30 Jan 2008 Vertebrate Physiology ECOL 437 (MCB/VetSci 437) Univ. of Arizona, spring 2008 Kevin Bonine & Kevin Oh 1. Intro Nervous System Fxn (slides 32-60 from Mon 28 Jan; Ch10) 2. Neurons

More information

BIOLOGY 11/10/2016. Neurons, Synapses, and Signaling. Concept 48.1: Neuron organization and structure reflect function in information transfer

BIOLOGY 11/10/2016. Neurons, Synapses, and Signaling. Concept 48.1: Neuron organization and structure reflect function in information transfer 48 Neurons, Synapses, and Signaling CAMPBELL BIOLOGY TENTH EDITION Reece Urry Cain Wasserman Minorsky Jackson Lecture Presentation by Nicole Tunbridge and Kathleen Fitzpatrick Concept 48.1: Neuron organization

More information

80% of all excitatory synapses - at the dendritic spines.

80% of all excitatory synapses - at the dendritic spines. Dendritic Modelling Dendrites (from Greek dendron, tree ) are the branched projections of a neuron that act to conduct the electrical stimulation received from other cells to and from the cell body, or

More information

Membrane equation. VCl. dv dt + V = V Na G Na + V K G K + V Cl G Cl. G total. C m. G total = G Na + G K + G Cl

Membrane equation. VCl. dv dt + V = V Na G Na + V K G K + V Cl G Cl. G total. C m. G total = G Na + G K + G Cl Spiking neurons Membrane equation V GNa GK GCl Cm VNa VK VCl dv dt + V = V Na G Na + V K G K + V Cl G Cl G total G total = G Na + G K + G Cl = C m G total Membrane with synaptic inputs V Gleak GNa GK

More information

Dynamical Synapses Give Rise to a Power-Law Distribution of Neuronal Avalanches

Dynamical Synapses Give Rise to a Power-Law Distribution of Neuronal Avalanches Dynamical Synapses Give Rise to a Power-Law Distribution of Neuronal Avalanches Anna Levina 3,4, J. Michael Herrmann 1,2, Theo Geisel 1,2,4 1 Bernstein Center for Computational Neuroscience Göttingen 2

More information

Mathematical Foundations of Neuroscience - Lecture 9. Simple Models of Neurons and Synapses.

Mathematical Foundations of Neuroscience - Lecture 9. Simple Models of Neurons and Synapses. Mathematical Foundations of Neuroscience - Lecture 9. Simple Models of and. Filip Piękniewski Faculty of Mathematics and Computer Science, Nicolaus Copernicus University, Toruń, Poland Winter 2009/2010

More information

Introduction and the Hodgkin-Huxley Model

Introduction and the Hodgkin-Huxley Model 1 Introduction and the Hodgkin-Huxley Model Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 Reference:

More information

Dendritic computation

Dendritic computation Dendritic computation Dendrites as computational elements: Passive contributions to computation Active contributions to computation Examples Geometry matters: the isopotential cell Injecting current I

More information