A SIMPLE MODEL OF A CENTRAL PATTERN GENERATOR FOR QUADRUPED GAITS

Size: px
Start display at page:

Download "A SIMPLE MODEL OF A CENTRAL PATTERN GENERATOR FOR QUADRUPED GAITS"

Transcription

1 A SIMPLE MODEL OF A CENTRAL PATTERN GENERATOR FOR QUADRUPED GAITS JEFFREY MARSH Humankind s long association with four-legged animals, wild as well as domesticated, has produced a rich vocabulary of words describing their size, shape, age, color, gender, and other physical attributes. In addition, there is a whole class for words referring to animal gaits. A gait is a repeating temporal pattern of leg movements used for locomotion. Common gaits of horses include the trot, canter, and gallop. In many animals, it is known that rhythmic motions are controlled not by signals directly from the brain, but by smaller collections of neurons in the spinal cord [5]. These neural networks are known as central pattern generators. Each neuron in such a network is referred to as a cell. In this project we consider a network of eight coupled cells which provides a model of a central pattern generator for the quadruped gaits walk, trot, pace, and canter [1, ]. 1. The Network The neural network we use is diagramed in Figure 1 where each cell is represented by a circle and the coupling from cell i to cell j is represented by an arrow from cell i to cell j. The different gaits are produced by changing the values of four coupling constants (α, β, γ, and δ) between the cells. Date: 6 May 1. Submitted in partial satisfaction of the requirements of the course Mathematics 548: Mathematical Modeling. Front 4 Right Left 5 Rear Figure 1. The eight-cell network used to model quadruped gaits. 1

2 JEFFREY MARSH The outputs of four of the cells in the network are each associated with the motion of one of the four legs of the quadruped. Cell 1 corresponds to the left hind leg (LH), cell to the right hind leg (RH), cell 3 to the left fore leg (LF ), and cell 4 to the right fore leg (RF ). The outputs of cells 5 through 8 are not considered here. We define an event called a footfall when the output of a given cell has positive slope and exceeds a certain threshold. For a given gait, this network models only the repeating pattern of footfalls in time. No attempt is made to model other leg motions such as joint angles or height of the foot above the ground. It has been shown using symmetry arguments [] that the smallest network that can model the gaits of walk, trot, and pace consists of eight cells, and it is hypothesized that two cells per leg are required because the flexor and extensor systems of muscles must be controlled separately.. The Cells Each cell is identical and is modeled as a system of two ordinary differential equations, the Morris-Lecar equations [4]. This system is widely used to describe the electrical behavior of neurons. The simplified Morris-Lecar equations are: v = g Ca m(v)(v 1) g L (v v L ) g K w(v v K ) + I ẇ = φτ(v)(n(v) w) where m(v) = 1 ( ( )) v v1 1 + tanh v n(v) = 1 ( ( )) v v3 1 + tanh v 4 and ( ) v v3 τ(v) = cosh v 4 Here v represents the electric potential (voltage) across the membrane of the neuron, and w represents the fraction of channels that are capable of transporting ions across the membrane. The other quantities appearing in the equations, φ, v 1, v, v 3, v 4, g Ca, g L, g K, v L, v K, and I, are treated as parameters. In this project we will be primarily concerned with v, as it represents the output of the cell. This system displays some very interesting behavior depending upon the choice of parameters. One to three equilibrium points in (v, w) phase space are possible. We choose a set of parameters (φ =., v 1 =., v =.4, v 3 =.3, v 4 =., g Ca = 3, g L =.6, g K = 1.8, v L = 1.8, v K =.8, and I = 1) for which the system has rather tame (i.e., boring) behavior. The vector field for this system with these parameters is shown in Figure. The two nullclines ( v = and ẇ = ) are shown. They intersect at (v eq, w eq ) =

3 CPG FOR QUADRUPED GAITS W V Figure. Vector field for the Morris-Lecar system. (.396,.541), which represents the system s single equilibrium point (a spiral sink). A cell whose output is momentarily grounded (i.e., the voltage is forced to zero) and then released follows the trajectory shown. The voltage versus time evolution of this trajectory is plotted in Figure 3. A single Morris-Lecar cell with these parameters does not oscillate, but decays to the equilibrium state. However, things get more interesting when we couple two or more cells. 3. The Coupling To explain how systems of N Morris-Lecar cells are coupled, we first define the state vector for the i th cell as x i = (v i, w i ) where i = 1,..., N. The dynamical system for an uncoupled single cell is then ẋ i = f(x i ). For a network of N coupled cells we have ẋ i = f(x i ) + j i α ij h(x j, x i ) Where α ij is the strength of the coupling from cell j to cell i. The coupling is called bidirectional if a ij = a ji. Also, h(x j, x i ) is a function that specifies the

4 4 JEFFREY MARSH V t Figure 3. Voltage evolution of a Morris-Lecar cell that has been momentarily grounded. form of the coupling. For linear diffusive coupling we have h(x j, x i ) = x j x i and for linear synaptic coupling we have h(x j, x i ) = x j. For example, a network of two cells with bidirectional linear synaptic coupling would be described by: ẋ 1 = f(x 1 ) + αx ẋ = f(x ) + αx 1 In this project we consider only linear synaptic coupling and assign four coupling constants as follows: The constant α determines the strength of the coupling only between v i and v j and only between cells in the front and cells in the rear (see Figure 1). Specifically, α couples v 1 to v 3, v 3 to v 5, v 5 to v 7, and v 7 to v 1 on the left side, and v to v 4, v 4 to v 6, v 6 to v 8, and v 8 to v on the right side. Constant β has identical cell assignments but couples w i to w j. Constant γ couples v i to v j but only between cells on the right and cells on the left. Specifically, γ couples v 3 to v 4, v 4 to v 3, v 7 to v 8, and v 8 to v 7 on the front, and v 1 to v, v to v 1, v 5 to v 6, and v 6 to v 5 on the rear. Constant δ has identical cell assignments but couples w i to w j. 4. The Gaits 4.1. Walk. In a walk, footfalls occur in the sequence LH, LF, RH, RF with approximately a quarter-period phase difference between successive footfalls. This gait is called symmetrical, that is, the footfalls of a pair of feet (fore or hind) are evenly spaced in time [3]. The walk is known as a four-beat gait because the cadence of footfalls has four distinct beats per period. The walk is used by most mammals for locomotion at slow speeds.

5 CPG FOR QUADRUPED GAITS 5 LH RH LF RF Figure 4. Voltages versus time for the walk gait. For this gait we assign the coupling constants as follows: α =.1, β =.1, and γ = δ = 1.. Non-zero initial conditions are v 1 () = 1.4. As mentioned above, the coupling for all networks considered here is linear synaptic. The eight-cell neural network gives us a system of 16 first-order non-linear differential equations, for which a numerical solution is easily found using Matlab. In Figure 4 we plot the voltage output versus time of the first four cells: v 1 (t) = LH, v (t) = RH, v 3 (t) = LF, v 4 (t) = RF. As can be seen, if we set a threshold around 1.9 or so, the spikes of the voltage curves neatly correspond to footfalls that are in the correct sequence and have approximately a quarter-period phase difference. 4.. Trot. For the symmetrical gait known as trot, diagonal pairs of legs strike the ground more-or-less simultaneously and there is approximately a half-period phase difference between the diagonal pairs. The sequence of footfalls can be represented as LH + RF, followed by LF + RH. The trot is a two-beat gait, as there are two distinct beats per period. This gait is used by most mammals for medium speed; some, such as those with short to medium legs, adopt no other gait. Coupling constants for the trot are: α = β = γ = δ =.6.

6 6 JEFFREY MARSH LH RH LF RF Figure 5. Voltages versus time for the trot gait. Solving the system of differential equations yields the voltage curves shown in Figure 5. Again we see for a threshold around 1.9, the spikes of the voltage curves correspond to footfalls that are in the correct sequence and have the correct phase relationship Pace. In a pace, legs on the same side (right or left) strike the ground more-or-less simultaneously with approximately a half-period phase difference between the right and left pairs. The pace is also a symmetrical gait and we may represent the sequence of footfalls by LF + LH, followed by RF + RH. The pace, like the trot, is also a two-beat gait. Camels, some horses, and large slender dogs use this gait. The coupling constants for the pace are: α = β =., and γ = δ =.. Non-zero initial conditions are v 1 () =.4 and w 1 () =.9. We numerically solve the system and obtain the voltage curves shown in Figure 6. These curves are not as nice and spiky as the pervious examples, but with a threshold of.8 we have the correct sequence and phases of footfalls Canter. A canter is not a symmetrical gait. In a canter, one diagonal pair of legs strike the ground more-or-less simultaneously, but the legs of the other diagonal pair are approximately a half-period out of phase. The

7 CPG FOR QUADRUPED GAITS 7 LH RH LF RF Figure 6. Voltages versus time for the pace gait. sequence of footfalls can be represented as LF, RH, LH + RF. The canter is a three-beat gait, and is employed by horses for medium to fast speeds. For the canter the coupling constants are: α =.17, β =., γ =.9, and δ = 1.. Unfortunately, for this gait we have to tweak the cell parameters, setting φ =. and g Ca = 8.. Non-zero initial conditions are: v 1 () =.4 and w 1 () =.3. Again we numerically solve the system and obtain the voltage curves shown in Figure 7. A threshold of 1.7 works nicely to generate the correct relative phases and the sequence of footfalls. Note that LH and RF and not exactly in phase, but they are very close. The cadence of the canter gait is immediately recognizable even to citydwellers who have never been in the presence of a real horse. We wanted to use the numerical solution to generate a sound file of this gait, but did not have the time to do so. 5. Final Remarks The systems of differential equations in this project were solved using Matlab. The Morris-Lecar equations are what is called a stiff system and we have found that for certain parameters and initial conditions, the Matlab ODE solver ode45 takes a very long time to cough up a solution.

8 8 JEFFREY MARSH LH RH LF RF Figure 7. Voltages versus time for the canter gait. Therefore, we have used the solver ode15s, which is specifically designed for stiff systems. Figure was produced using the Matlab program pplane7.m which is copyright by John C. Polking of Rice University. Matlab is copyright , The Mathworks, Inc. References 1. Pietro-Luciano Buono, Models of central pattern generators for quadruped locomotion: Secondary gaits, Journal of Mathematical Biology 4 (1), Pietro-Luciano Buono and Martin Golubitsky, Models of central pattern generators for quadruped locomotion: Primary gaits, Journal of Mathematical Biology 4 (1), Milton Hildebrand, The quadrupedal gaits of vertebrates, BioScience 39 (1989), Catherine Morris and Harold Lecar, Voltage oscillations in the barnacle giant muscle fiber, Biophysical Journal 35 (1981), J. D. Murray, Mathematical biology, first ed., Biomathematics, no. 19, p. 58, Springer Verlag, Berlin, 1989.

Symmetry Breaking and Synchrony Breaking

Symmetry Breaking and Synchrony Breaking p. 1/45 Symmetry Breaking and Synchrony Breaking Martin Golubitsky Department of Mathematics Mathematical Biosciences Institute Ohio State p. 2/45 Why Study Patterns I Patterns are surprising and pretty

More information

Central Pattern Generators

Central Pattern Generators Central Pattern Generators SHARON CROOK and AVIS COHEN 8.1 Introduction Many organisms exhibit repetitive or oscillatory patterns of muscle activity that produce rhythmic movements such as locomotion,

More information

Modeling Action Potentials in Cell Processes

Modeling Action Potentials in Cell Processes Modeling Action Potentials in Cell Processes Chelsi Pinkett, Jackie Chism, Kenneth Anderson, Paul Klockenkemper, Christopher Smith, Quarail Hale Tennessee State University Action Potential Models Chelsi

More information

arxiv: v1 [math.ds] 13 Jul 2018

arxiv: v1 [math.ds] 13 Jul 2018 Heterogeneous inputs to central pattern generators can shape insect gaits. Zahra Aminzare Philip Holmes arxiv:1807.05142v1 [math.ds] 13 Jul 2018 Abstract In our previous work [1], we studied an interconnected

More information

Biological Cybernetics c Springer-Verlag 1997

Biological Cybernetics c Springer-Verlag 1997 Biol. Cybern. 77, 367 380 (997) Biological Cybernetics c Springer-Verlag 997 Phase response characteristics of model neurons determine which patterns are expressed in a ring circuit model of gait generation

More information

arxiv: v2 [math.ds] 21 Aug 2017

arxiv: v2 [math.ds] 21 Aug 2017 Gait transitions in a phase oscillator model of an insect central pattern generator arxiv:1704.05738v2 [math.ds] 21 Aug 2017 Zahra Aminzare Vaibhav Srivastava Philip Holmes Abstract Legged locomotion involves

More information

Coupling in Networks of Neuronal Oscillators. Carter Johnson

Coupling in Networks of Neuronal Oscillators. Carter Johnson Coupling in Networks of Neuronal Oscillators Carter Johnson June 15, 2015 1 Introduction Oscillators are ubiquitous in nature. From the pacemaker cells that keep our hearts beating to the predator-prey

More information

Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators

Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators Ranjeetha Bharath and Jean-Jacques Slotine Massachusetts Institute of Technology ABSTRACT This work explores

More information

Single-Compartment Neural Models

Single-Compartment Neural Models Single-Compartment Neural Models BENG/BGGN 260 Neurodynamics University of California, San Diego Week 2 BENG/BGGN 260 Neurodynamics (UCSD) Single-Compartment Neural Models Week 2 1 / 18 Reading Materials

More information

Control and Integration. Nervous System Organization: Bilateral Symmetric Animals. Nervous System Organization: Radial Symmetric Animals

Control and Integration. Nervous System Organization: Bilateral Symmetric Animals. Nervous System Organization: Radial Symmetric Animals Control and Integration Neurophysiology Chapters 10-12 Nervous system composed of nervous tissue cells designed to conduct electrical impulses rapid communication to specific cells or groups of cells Endocrine

More information

Math 345 Intro to Math Biology Lecture 20: Mathematical model of Neuron conduction

Math 345 Intro to Math Biology Lecture 20: Mathematical model of Neuron conduction Math 345 Intro to Math Biology Lecture 20: Mathematical model of Neuron conduction Junping Shi College of William and Mary November 8, 2018 Neuron Neurons Neurons are cells in the brain and other subsystems

More information

DESYNCHRONIZATION TRANSITIONS IN RINGS OF COUPLED CHAOTIC OSCILLATORS

DESYNCHRONIZATION TRANSITIONS IN RINGS OF COUPLED CHAOTIC OSCILLATORS Letters International Journal of Bifurcation and Chaos, Vol. 8, No. 8 (1998) 1733 1738 c World Scientific Publishing Company DESYNCHRONIZATION TRANSITIONS IN RINGS OF COUPLED CHAOTIC OSCILLATORS I. P.

More information

Chapter 24 BIFURCATIONS

Chapter 24 BIFURCATIONS Chapter 24 BIFURCATIONS Abstract Keywords: Phase Portrait Fixed Point Saddle-Node Bifurcation Diagram Codimension-1 Hysteresis Hopf Bifurcation SNIC Page 1 24.1 Introduction In linear systems, responses

More information

Passive Membrane Properties

Passive Membrane Properties Passive Membrane Properties Communicating through a leaky garden hose... Topics I Introduction & Electrochemical Gradients Passive Membrane Properties Action Potentials Voltage-Gated Ion Channels Topics

More information

Stochastic Oscillator Death in Globally Coupled Neural Systems

Stochastic Oscillator Death in Globally Coupled Neural Systems Journal of the Korean Physical Society, Vol. 52, No. 6, June 2008, pp. 19131917 Stochastic Oscillator Death in Globally Coupled Neural Systems Woochang Lim and Sang-Yoon Kim y Department of Physics, Kangwon

More information

Dynamical Systems in Neuroscience: Elementary Bifurcations

Dynamical Systems in Neuroscience: Elementary Bifurcations Dynamical Systems in Neuroscience: Elementary Bifurcations Foris Kuang May 2017 1 Contents 1 Introduction 3 2 Definitions 3 3 Hodgkin-Huxley Model 3 4 Morris-Lecar Model 4 5 Stability 5 5.1 Linear ODE..............................................

More information

/639 Final Solutions, Part a) Equating the electrochemical potentials of H + and X on outside and inside: = RT ln H in

/639 Final Solutions, Part a) Equating the electrochemical potentials of H + and X on outside and inside: = RT ln H in 580.439/639 Final Solutions, 2014 Question 1 Part a) Equating the electrochemical potentials of H + and X on outside and inside: RT ln H out + zf 0 + RT ln X out = RT ln H in F 60 + RT ln X in 60 mv =

More information

6.3.4 Action potential

6.3.4 Action potential I ion C m C m dφ dt Figure 6.8: Electrical circuit model of the cell membrane. Normally, cells are net negative inside the cell which results in a non-zero resting membrane potential. The membrane potential

More information

Canonical Neural Models 1

Canonical Neural Models 1 Canonical Neural Models 1 Frank Hoppensteadt 1 and Eugene zhikevich 2 ntroduction Mathematical modeling is a powerful tool in studying fundamental principles of information processing in the brain. Unfortunately,

More information

Chapter 1 Introduction

Chapter 1 Introduction Chapter 1 Introduction 1.1 Introduction to Chapter This chapter starts by describing the problems addressed by the project. The aims and objectives of the research are outlined and novel ideas discovered

More information

Deconstructing Actual Neurons

Deconstructing Actual Neurons 1 Deconstructing Actual Neurons Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 Reference: The many ionic

More information

Computational Neuroscience. Session 4-2

Computational Neuroscience. Session 4-2 Computational Neuroscience. Session 4-2 Dr. Marco A Roque Sol 06/21/2018 Two-Dimensional Two-Dimensional System In this section we will introduce methods of phase plane analysis of two-dimensional systems.

More information

Biomedical Instrumentation

Biomedical Instrumentation ELEC ENG 4BD4: Biomedical Instrumentation Lecture 5 Bioelectricity 1. INTRODUCTION TO BIOELECTRICITY AND EXCITABLE CELLS Historical perspective: Bioelectricity first discovered by Luigi Galvani in 1780s

More information

Phase Response Properties of Half-Center. Oscillators

Phase Response Properties of Half-Center. Oscillators Phase Response Properties of Half-Center Oscillators Jiawei Calvin Zhang Timothy J. Lewis Department of Mathematics, University of California, Davis Davis, CA 95616, USA June 17, 212 Abstract We examine

More information

Nerve Excitation. L. David Roper This is web page

Nerve Excitation. L. David Roper  This is web page Nerve Excitation L. David Roper http://arts.bev.net/roperldavid This is web page http://www.roperld.com/science/nerveexcitation.pdf Chapter 1. The Action Potential A typical action potential (inside relative

More information

Chapter 37 Active Reading Guide Neurons, Synapses, and Signaling

Chapter 37 Active Reading Guide Neurons, Synapses, and Signaling Name: AP Biology Mr. Croft Section 1 1. What is a neuron? Chapter 37 Active Reading Guide Neurons, Synapses, and Signaling 2. Neurons can be placed into three groups, based on their location and function.

More information

Neural Modeling and Computational Neuroscience. Claudio Gallicchio

Neural Modeling and Computational Neuroscience. Claudio Gallicchio Neural Modeling and Computational Neuroscience Claudio Gallicchio 1 Neuroscience modeling 2 Introduction to basic aspects of brain computation Introduction to neurophysiology Neural modeling: Elements

More information

Chimera states in networks of biological neurons and coupled damped pendulums

Chimera states in networks of biological neurons and coupled damped pendulums in neural models in networks of pendulum-like elements in networks of biological neurons and coupled damped pendulums J. Hizanidis 1, V. Kanas 2, A. Bezerianos 3, and T. Bountis 4 1 National Center for

More information

On Partial Contraction Analysis for Coupled Nonlinear Oscillators

On Partial Contraction Analysis for Coupled Nonlinear Oscillators On Partial Contraction Analysis for Coupled Nonlinear Oscillators Wei Wang and Jean-Jacques E. Slotine Nonlinear Systems Laboratory Massachusetts Institute of Technology Cambridge, Massachusetts, 0139,

More information

Analysis of coupled van der Pol oscillators and implementation to a myriapod robot

Analysis of coupled van der Pol oscillators and implementation to a myriapod robot Proceedings of the 17th World Congress The International Federation of Automatic Control Analysis of coupled van der Pol oscillators and implementation to a myriapod robot Naoki KUWATA Yoshikatsu HOSHI

More information

Nervous System Organization

Nervous System Organization The Nervous System Chapter 44 Nervous System Organization All animals must be able to respond to environmental stimuli -Sensory receptors = Detect stimulus -Motor effectors = Respond to it -The nervous

More information

Kirchhoff s Rules. Survey available this week. $ closed loop. Quiz on a simple DC circuit. Quiz on a simple DC circuit

Kirchhoff s Rules. Survey available this week. $ closed loop. Quiz on a simple DC circuit. Quiz on a simple DC circuit RC Circuits. Start Magnetic Fields Announcement on MTE 1 This Lecture: RC circuits Membrane electrical currents Magnetic Fields and Magnets Wednesday Oct. 4, slightly later start time:5:45 pm - 7:15 pm

More information

PNS Chapter 7. Membrane Potential / Neural Signal Processing Spring 2017 Prof. Byron Yu

PNS Chapter 7. Membrane Potential / Neural Signal Processing Spring 2017 Prof. Byron Yu PNS Chapter 7 Membrane Potential 18-698 / 42-632 Neural Signal Processing Spring 2017 Prof. Byron Yu Roadmap Introduction to neuroscience Chapter 1 The brain and behavior Chapter 2 Nerve cells and behavior

More information

1. Synchronization Phenomena

1. Synchronization Phenomena 1. Synchronization Phenomena In nature synchronization happens all the time. In mechanical systems, in biological systems, in epidemiology, basically everywhere. When we talk about synchronization we usually

More information

Final Exam Solutions, 1999

Final Exam Solutions, 1999 580.439 Final Exam Solutions, 999 Problem Part a A minimal circuit model is drawn below. The synaptic inals of cells A and B are represented by the parallel Cell A combination of synaptic conductance (G

More information

This document is downloaded from DR-NTU, Nanyang Technological University Library, Singapore.

This document is downloaded from DR-NTU, Nanyang Technological University Library, Singapore. This document is downloaded from DR-NTU, Nanyang Technological University Library, Singapore. Title Small-signal neural models and their applications Author(s) Basu, Arindam Citation Basu, A. (01). Small-signal

More information

Curtis et al. Il nuovo Invito alla biologia.blu BIOLOGY HIGHLIGHTS KEYS

Curtis et al. Il nuovo Invito alla biologia.blu BIOLOGY HIGHLIGHTS KEYS BIOLOGY HIGHLIGHTS KEYS Watch the videos and download the transcripts of this section at: online.scuola.zanichelli.it/curtisnuovoinvitoblu/clil > THE HUMAN NERVOUS SYSTEM 2. WARM UP a) The structures that

More information

NEURONS, SENSE ORGANS, AND NERVOUS SYSTEMS CHAPTER 34

NEURONS, SENSE ORGANS, AND NERVOUS SYSTEMS CHAPTER 34 NEURONS, SENSE ORGANS, AND NERVOUS SYSTEMS CHAPTER 34 KEY CONCEPTS 34.1 Nervous Systems Are Composed of Neurons and Glial Cells 34.2 Neurons Generate Electric Signals by Controlling Ion Distributions 34.3

More information

Nature-inspired Analog Computing on Silicon

Nature-inspired Analog Computing on Silicon Nature-inspired Analog Computing on Silicon Tetsuya ASAI and Yoshihito AMEMIYA Division of Electronics and Information Engineering Hokkaido University Abstract We propose CMOS analog circuits that emulate

More information

Signal processing in nervous system - Hodgkin-Huxley model

Signal processing in nervous system - Hodgkin-Huxley model Signal processing in nervous system - Hodgkin-Huxley model Ulrike Haase 19.06.2007 Seminar "Gute Ideen in der theoretischen Biologie / Systembiologie" Signal processing in nervous system Nerve cell and

More information

Nervous System Organization

Nervous System Organization The Nervous System Nervous System Organization Receptors respond to stimuli Sensory receptors detect the stimulus Motor effectors respond to stimulus Nervous system divisions Central nervous system Command

More information

THe issue of motor control and motor learning in artificial

THe issue of motor control and motor learning in artificial The Fourth IEEE RAS/EMBS International Conference on Biomedical Robotics and Biomechatronics Roma, Italy. June 24-27, 2012 CPG-based locomotion generation in a Drosophila inspired legged robot Eleonora

More information

2182. Hopf bifurcation analysis and control of three-dimensional Prescott neuron model

2182. Hopf bifurcation analysis and control of three-dimensional Prescott neuron model 2182. Hopf bifurcation analysis and control of three-dimensional Prescott neuron model Chunhua Yuan 1, Jiang Wang 2 School of Electrical Engineering and Automation, Tianjin University, Tianjin, China 2

More information

Fast neural network simulations with population density methods

Fast neural network simulations with population density methods Fast neural network simulations with population density methods Duane Q. Nykamp a,1 Daniel Tranchina b,a,c,2 a Courant Institute of Mathematical Science b Department of Biology c Center for Neural Science

More information

3 Action Potentials - Brutal Approximations

3 Action Potentials - Brutal Approximations Physics 172/278 - David Kleinfeld - Fall 2004; Revised Winter 2015 3 Action Potentials - Brutal Approximations The Hodgkin-Huxley equations for the behavior of the action potential in squid, and similar

More information

Multinomial functional regression with application to lameness detection for horses

Multinomial functional regression with application to lameness detection for horses Department of Mathematical Sciences Multinomial functional regression with application to lameness detection for horses Helle Sørensen (helle@math.ku.dk) Joint with Seyed Nourollah Mousavi user! 2015,

More information

Towards Testable Neuromechanical Control Architectures for Running

Towards Testable Neuromechanical Control Architectures for Running Towards Testable Neuromechanical Control Architectures for Running Shai Revzen 1, Daniel E. Koditschek 2, and Robert J. Full 1 1 Integrative Biology Department University of California at Berkeley Tel.:

More information

A learning model for oscillatory networks

A learning model for oscillatory networks Pergamon Neural Networks Neural Networks 11 (1998) 249 257 Contributed article A learning model for oscillatory networks Jun Nishii* Laboratory for Neural Modeling, The Institute of Physical and Chemical

More information

FRTF01 L8 Electrophysiology

FRTF01 L8 Electrophysiology FRTF01 L8 Electrophysiology Lecture Electrophysiology in general Recap: Linear Time Invariant systems (LTI) Examples of 1 and 2-dimensional systems Stability analysis The need for non-linear descriptions

More information

A Neuromorphic VLSI System for Modeling the Neural Control of Axial Locomotion

A Neuromorphic VLSI System for Modeling the Neural Control of Axial Locomotion A Neuromorphic VLSI System for Modeling the Neural Control of Axial Locomotion Girish N. Patel girish@ece.gatech.edu Edgar A. Brown ebrown@ece.gatech.edu Stephen P. De Weerth steved@ece.gatech.edu School

More information

Seminar 6: COUPLED HARMONIC OSCILLATORS

Seminar 6: COUPLED HARMONIC OSCILLATORS Seminar 6: COUPLED HARMONIC OSCILLATORS 1. Lagrangian Equations of Motion Let consider a system consisting of two harmonic oscillators that are coupled together. As a model, we will use two particles attached

More information

Ch. 5. Membrane Potentials and Action Potentials

Ch. 5. Membrane Potentials and Action Potentials Ch. 5. Membrane Potentials and Action Potentials Basic Physics of Membrane Potentials Nerve and muscle cells: Excitable Capable of generating rapidly changing electrochemical impulses at their membranes

More information

Neurons and Nervous Systems

Neurons and Nervous Systems 34 Neurons and Nervous Systems Concept 34.1 Nervous Systems Consist of Neurons and Glia Nervous systems have two categories of cells: Neurons, or nerve cells, are excitable they generate and transmit electrical

More information

ABSTRACT: TITLE: Model and Control of an Autonomous Robot Dog. THEME: Final Thesis. PROJECT PERIOD: 10 th semester, February 1 st - June 7 th 2007

ABSTRACT: TITLE: Model and Control of an Autonomous Robot Dog. THEME: Final Thesis. PROJECT PERIOD: 10 th semester, February 1 st - June 7 th 2007 Department of Control Engineering Fredrik Bajers Vej 7C DK-9220 Aalborg Ø Phone.: +45 9635 8600 Web: http://www.control.aau.dk TITLE: Model and Control of an Autonomous Robot Dog. THEME: Final Thesis.

More information

Balance of Electric and Diffusion Forces

Balance of Electric and Diffusion Forces Balance of Electric and Diffusion Forces Ions flow into and out of the neuron under the forces of electricity and concentration gradients (diffusion). The net result is a electric potential difference

More information

Electrophysiology of the neuron

Electrophysiology of the neuron School of Mathematical Sciences G4TNS Theoretical Neuroscience Electrophysiology of the neuron Electrophysiology is the study of ionic currents and electrical activity in cells and tissues. The work of

More information

Quantitative Understanding in Biology Module IV: ODEs Lecture II: Linear ODEs and Stability

Quantitative Understanding in Biology Module IV: ODEs Lecture II: Linear ODEs and Stability Quantitative Understanding in Biology Module IV: ODEs Lecture II: Linear ODEs and Stability Linear Differential Equations You will recall from the previous lecture that the solution to the canonical ordinary

More information

The Spike Response Model: A Framework to Predict Neuronal Spike Trains

The Spike Response Model: A Framework to Predict Neuronal Spike Trains The Spike Response Model: A Framework to Predict Neuronal Spike Trains Renaud Jolivet, Timothy J. Lewis 2, and Wulfram Gerstner Laboratory of Computational Neuroscience, Swiss Federal Institute of Technology

More information

Dynamical Systems for Biology - Excitability

Dynamical Systems for Biology - Excitability Dynamical Systems for Biology - Excitability J. P. Keener Mathematics Department Dynamical Systems for Biology p.1/25 Examples of Excitable Media B-Z reagent CICR (Calcium Induced Calcium Release) Nerve

More information

Single neuron models. L. Pezard Aix-Marseille University

Single neuron models. L. Pezard Aix-Marseille University Single neuron models L. Pezard Aix-Marseille University Biophysics Biological neuron Biophysics Ionic currents Passive properties Active properties Typology of models Compartmental models Differential

More information

On the Effects of Design Parameters on Quadruped Robot Gaits

On the Effects of Design Parameters on Quadruped Robot Gaits On the Effects of Design Parameters on Quadruped Robot Gaits Dimitrios Myrisiotis, Ioannis Poulakakis, Member, IEEE and Evangelos Papadopoulos, Senior Member, IEEE Abstract In this work, we link the various

More information

Proceedings of Neural, Parallel, and Scientific Computations 4 (2010) xx-xx PHASE OSCILLATOR NETWORK WITH PIECEWISE-LINEAR DYNAMICS

Proceedings of Neural, Parallel, and Scientific Computations 4 (2010) xx-xx PHASE OSCILLATOR NETWORK WITH PIECEWISE-LINEAR DYNAMICS Proceedings of Neural, Parallel, and Scientific Computations 4 (2010) xx-xx PHASE OSCILLATOR NETWORK WITH PIECEWISE-LINEAR DYNAMICS WALTER GALL, YING ZHOU, AND JOSEPH SALISBURY Department of Mathematics

More information

Nervous Systems: Neuron Structure and Function

Nervous Systems: Neuron Structure and Function Nervous Systems: Neuron Structure and Function Integration An animal needs to function like a coherent organism, not like a loose collection of cells. Integration = refers to processes such as summation

More information

Bursting and Chaotic Activities in the Nonlinear Dynamics of FitzHugh-Rinzel Neuron Model

Bursting and Chaotic Activities in the Nonlinear Dynamics of FitzHugh-Rinzel Neuron Model Bursting and Chaotic Activities in the Nonlinear Dynamics of FitzHugh-Rinzel Neuron Model Abhishek Yadav *#, Anurag Kumar Swami *, Ajay Srivastava * * Department of Electrical Engineering, College of Technology,

More information

/639 Final Examination Solutions

/639 Final Examination Solutions 58.439/639 Final Examination Solutions Problem 1 Part a) The A group binds in a region of the molecule that is designed to attract potassium ions, by having net negative charges surrounding the pore; the

More information

Nonlinear Dynamics of Neural Firing

Nonlinear Dynamics of Neural Firing Nonlinear Dynamics of Neural Firing BENG/BGGN 260 Neurodynamics University of California, San Diego Week 3 BENG/BGGN 260 Neurodynamics (UCSD) Nonlinear Dynamics of Neural Firing Week 3 1 / 16 Reading Materials

More information

Hexapod Robot with Articulated Body

Hexapod Robot with Articulated Body Hexapod Robot with Articulated Body A.V. Panchenko 1, V.E. Pavlovsky 2, D.L. Sholomov 3 1,2 KIAM RAS, Moscow, Russia. 3 ISA FRC CSC RAS, Moscow, Russia. Abstract The paper describes kinematic control for

More information

Full Paper Proceeding ECBA-2017, Vol Issue. 37, 1-11 ECBA-17. Optimization of Central Patterns Generators. 1, 2,3 Atılım University, Turkey

Full Paper Proceeding ECBA-2017, Vol Issue. 37, 1-11 ECBA-17. Optimization of Central Patterns Generators. 1, 2,3 Atılım University, Turkey Full Paper Proceeding ECBA-017, Vol. 00 - Issue. 37, 1-11 ECBA-17 Optimization of Central Patterns Generators FULL PAPER PROCEEDING Multidisciplinary Studies Available online at www.academicfora.com Abdalftah

More information

MANY scientists believe that pulse-coupled neural networks

MANY scientists believe that pulse-coupled neural networks IEEE TRANSACTIONS ON NEURAL NETWORKS, VOL. 10, NO. 3, MAY 1999 499 Class 1 Neural Excitability, Conventional Synapses, Weakly Connected Networks, and Mathematical Foundations of Pulse-Coupled Models Eugene

More information

APPM 2360 Project 3 Mathematical Investigation of Cardiac Dynamics

APPM 2360 Project 3 Mathematical Investigation of Cardiac Dynamics APPM 2360 Project 3 Mathematical Investigation of Cardiac Dynamics Due: Thursday, December 6, 2018 by 4:59 p.m. Submit as a PDF to Assignments on Canvas 1 Introduction Cardiac Arrhythmia, or irregular

More information

Lab 5: Nonlinear Systems

Lab 5: Nonlinear Systems Lab 5: Nonlinear Systems Goals In this lab you will use the pplane6 program to study two nonlinear systems by direct numerical simulation. The first model, from population biology, displays interesting

More information

Numerical Computation of Canards

Numerical Computation of Canards Numerical Computation of Canards John Guckenheimer Kathleen Hoffman Warren Weckesser January 9, 23 Shortened title: Computing Canards Abstract Singularly perturbed systems of ordinary differential equations

More information

Spike-adding canard explosion of bursting oscillations

Spike-adding canard explosion of bursting oscillations Spike-adding canard explosion of bursting oscillations Paul Carter Mathematical Institute Leiden University Abstract This paper examines a spike-adding bifurcation phenomenon whereby small amplitude canard

More information

Reducing neuronal networks to discrete dynamics

Reducing neuronal networks to discrete dynamics Physica D 237 (2008) 324 338 www.elsevier.com/locate/physd Reducing neuronal networks to discrete dynamics David Terman a,b,, Sungwoo Ahn a, Xueying Wang a, Winfried Just c a Department of Mathematics,

More information

An Introductory Course in Computational Neuroscience

An Introductory Course in Computational Neuroscience An Introductory Course in Computational Neuroscience Contents Series Foreword Acknowledgments Preface 1 Preliminary Material 1.1. Introduction 1.1.1 The Cell, the Circuit, and the Brain 1.1.2 Physics of

More information

Network Oscillations Generated by Balancing Graded Asymmetric Reciprocal Inhibition in Passive Neurons

Network Oscillations Generated by Balancing Graded Asymmetric Reciprocal Inhibition in Passive Neurons The Journal of Neuroscience, April 1, 1999, 19(7):2765 2779 Network Oscillations Generated by Balancing Graded Asymmetric Reciprocal Inhibition in Passive Neurons Yair Manor, 1 Farzan Nadim, 1 Steven Epstein,

More information

Nervous System: Part II How A Neuron Works

Nervous System: Part II How A Neuron Works Nervous System: Part II How A Neuron Works Essential Knowledge Statement 3.E.2 Continued Animals have nervous systems that detect external and internal signals, transmit and integrate information, and

More information

What is a Skeleton? SKELETONS: Museum of Osteology Lesson Curriculum K 5 th Grade 55 Minute Program

What is a Skeleton? SKELETONS: Museum of Osteology Lesson Curriculum K 5 th Grade 55 Minute Program Kindergarten: SC.K.N.1.2 Make observations of the natural world and know that they are descriptors collected using the five senses. SC.K.N.1.4 Observe and create a visual representation of an object which

More information

Qualitative Analysis of Tumor-Immune ODE System

Qualitative Analysis of Tumor-Immune ODE System of Tumor-Immune ODE System LG de Pillis and AE Radunskaya August 15, 2002 This work was supported in part by a grant from the WM Keck Foundation 0-0 QUALITATIVE ANALYSIS Overview 1 Simplified System of

More information

Problem Set Number 02, j/2.036j MIT (Fall 2018)

Problem Set Number 02, j/2.036j MIT (Fall 2018) Problem Set Number 0, 18.385j/.036j MIT (Fall 018) Rodolfo R. Rosales (MIT, Math. Dept., room -337, Cambridge, MA 0139) September 6, 018 Due October 4, 018. Turn it in (by 3PM) at the Math. Problem Set

More information

Physically Based Modeling Differential Equation Basics

Physically Based Modeling Differential Equation Basics Physically Based Modeling Differential Equation Basics Andrew Witkin and David Baraff Pixar Animation Studios Please note: This document is 2001 by Andrew Witkin and David Baraff. This chapter may be freely

More information

NUMERICAL ACCURACY OF TWO BENCHMARK MODELS OF WALKING: THE RIMLESS SPOKED WHEEL AND THE SIMPLEST WALKER

NUMERICAL ACCURACY OF TWO BENCHMARK MODELS OF WALKING: THE RIMLESS SPOKED WHEEL AND THE SIMPLEST WALKER Dynamics of Continuous, Discrete and Impulsive Systems Series B: Applications & Algorithms 21 (2014) 137-148 Copyright c 2014 Watam Press NUMERICAL ACCURACY OF TWO BENCHMARK MODELS OF WALKING: THE RIMLESS

More information

Naseem Demeri. Mohammad Alfarra. Mohammad Khatatbeh

Naseem Demeri. Mohammad Alfarra. Mohammad Khatatbeh 7 Naseem Demeri Mohammad Alfarra Mohammad Khatatbeh In the previous lectures, we have talked about how the difference in permeability for ions across the cell membrane can generate a potential. The potential

More information

1 R.V k V k 1 / I.k/ here; we ll stimulate the action potential another way.) Note that this further simplifies to. m 3 k h k.

1 R.V k V k 1 / I.k/ here; we ll stimulate the action potential another way.) Note that this further simplifies to. m 3 k h k. 1. The goal of this problem is to simulate a propagating action potential for the Hodgkin-Huxley model and to determine the propagation speed. From the class notes, the discrete version (i.e., after breaking

More information

CHAPTER 3 SYNCHRONY IN RELAXATION OSCILLATORS

CHAPTER 3 SYNCHRONY IN RELAXATION OSCILLATORS CHAPTER 3 SYNCHRONY IN RELAXATION OSCILLATORS 3.1 Introduction The phrase relaxation oscillations was coined by van der Pol in 1926 in his analysis of a triode circuit [van der Pol, 1926]. A relaxation

More information

Single-Cell and Mean Field Neural Models

Single-Cell and Mean Field Neural Models 1 Single-Cell and Mean Field Neural Models Richard Bertram Department of Mathematics and Programs in Neuroscience and Molecular Biophysics Florida State University Tallahassee, Florida 32306 The neuron

More information

لجنة الطب البشري رؤية تنير دروب تميزكم

لجنة الطب البشري رؤية تنير دروب تميزكم 1) Hyperpolarization phase of the action potential: a. is due to the opening of voltage-gated Cl channels. b. is due to prolonged opening of voltage-gated K + channels. c. is due to closure of the Na +

More information

Chapter 48 Neurons, Synapses, and Signaling

Chapter 48 Neurons, Synapses, and Signaling Chapter 48 Neurons, Synapses, and Signaling Concept 48.1 Neuron organization and structure reflect function in information transfer Neurons are nerve cells that transfer information within the body Neurons

More information

STEIN IN-TERM EXAM -- BIOLOGY FEBRUARY 12, PAGE 1 of 7

STEIN IN-TERM EXAM -- BIOLOGY FEBRUARY 12, PAGE 1 of 7 STEIN IN-TERM EXAM -- BIOLOGY 3058 -- FEBRUARY 12, 2009 -- PAGE 1 of 7 There are 25 questions in this Biology 3058 exam. All questions are "A, B, C, D, E, F, G, H" questions worth one point each. There

More information

Delay Differential Equations with Constant Lags

Delay Differential Equations with Constant Lags Delay Differential Equations with Constant Lags L.F. Shampine Mathematics Department Southern Methodist University Dallas, TX 75275 shampine@smu.edu S. Thompson Department of Mathematics & Statistics Radford

More information

Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators

Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators Nonlinear Observer Design and Synchronization Analysis for Classical Models of Neural Oscillators by Ranjeetha Bharath Submitted to the Department of Mechanical Engineering in Partial Fulfillment of the

More information

Reduction of Conductance Based Models with Slow Synapses to Neural Nets

Reduction of Conductance Based Models with Slow Synapses to Neural Nets Reduction of Conductance Based Models with Slow Synapses to Neural Nets Bard Ermentrout October 1, 28 Abstract The method of averaging and a detailed bifurcation calculation are used to reduce a system

More information

STUDENT PAPER. Santiago Santana University of Illinois, Urbana-Champaign Blue Waters Education Program 736 S. Lombard Oak Park IL, 60304

STUDENT PAPER. Santiago Santana University of Illinois, Urbana-Champaign Blue Waters Education Program 736 S. Lombard Oak Park IL, 60304 STUDENT PAPER Differences between Stochastic and Deterministic Modeling in Real World Systems using the Action Potential of Nerves. Santiago Santana University of Illinois, Urbana-Champaign Blue Waters

More information

Section 9.3 Phase Plane Portraits (for Planar Systems)

Section 9.3 Phase Plane Portraits (for Planar Systems) Section 9.3 Phase Plane Portraits (for Planar Systems) Key Terms: Equilibrium point of planer system yꞌ = Ay o Equilibrium solution Exponential solutions o Half-line solutions Unstable solution Stable

More information

Lecture 3. Dynamical Systems in Continuous Time

Lecture 3. Dynamical Systems in Continuous Time Lecture 3. Dynamical Systems in Continuous Time University of British Columbia, Vancouver Yue-Xian Li November 2, 2017 1 3.1 Exponential growth and decay A Population With Generation Overlap Consider a

More information

2.152 Course Notes Contraction Analysis MIT, 2005

2.152 Course Notes Contraction Analysis MIT, 2005 2.152 Course Notes Contraction Analysis MIT, 2005 Jean-Jacques Slotine Contraction Theory ẋ = f(x, t) If Θ(x, t) such that, uniformly x, t 0, F = ( Θ + Θ f x )Θ 1 < 0 Θ(x, t) T Θ(x, t) > 0 then all solutions

More information

Neurons, Synapses, and Signaling

Neurons, Synapses, and Signaling LECTURE PRESENTATIONS For CAMPBELL BIOLOGY, NINTH EDITION Jane B. Reece, Lisa A. Urry, Michael L. Cain, Steven A. Wasserman, Peter V. Minorsky, Robert B. Jackson Chapter 48 Neurons, Synapses, and Signaling

More information

Modelling stochastic neural learning

Modelling stochastic neural learning Modelling stochastic neural learning Computational Neuroscience András Telcs telcs.andras@wigner.mta.hu www.cs.bme.hu/~telcs http://pattern.wigner.mta.hu/participants/andras-telcs Compiled from lectures

More information

The SIRS Model Approach to Host/Parasite Relationships

The SIRS Model Approach to Host/Parasite Relationships = B I + y (N I ) 1 8 6 4 2 I = B I v I N = 5 v = 25 The IR Model Approach to Host/Parasite Relationships Brianne Gill May 16, 28 5 1 15 2 The IR Model... Abstract In this paper, we shall explore examples

More information

INFINITESIMAL PHASE RESPONSE CURVES FOR PIECEWISE SMOOTH DYNAMICAL SYSTEMS. Youngmin Park. Submitted in partial fulfillment of the requirements

INFINITESIMAL PHASE RESPONSE CURVES FOR PIECEWISE SMOOTH DYNAMICAL SYSTEMS. Youngmin Park. Submitted in partial fulfillment of the requirements INFINITESIMAL PHASE RESPONSE CURVES FOR PIECEWISE SMOOTH DYNAMICAL SYSTEMS by Youngmin Park Submitted in partial fulfillment of the requirements For the degree of Masters of Science Thesis Advisor: Dr.

More information