Coarse-grained Models for Oligomer-grafted Silica Nanoparticles
|
|
- Joanna Watts
- 6 years ago
- Views:
Transcription
1 Modeling So+ Ma-er: Linking Mul3ple Length and Time Scales KITP Conference, Santa Barbara, June 4-8, 2012 Coarse-grained Models for Oligomer-grafted Silica Nanoparticles Bingbing Hong Alexandros Chremos Athanassios Z. Panagiotopoulos Department of Chemical & Biological Engineering Princeton Center for Complex Materials
2 Nanoscale ionic & organic hybrid materials Covalent grafting Ionic grafting -organosilane-peg Viscous liquids Solvent-free Ultra low vapor pressures Many functionalities from cores + chains SiO 2 J. L. Nugent, L. A. Archer, Adv. Mater. 22: (2010) P. Agarwal, L. A. Archer, Phys. Rev. E 83: (2011) A. B. Bourlinos,, L. A. Archer, E. P. Giannellis, J. Am. Chem. Soc. 126: (2004) R. Rodriguez,, L. A. Archer, E. P. Giannelis, Adv. Mater. 20: (2008)
3 Atomistic reference (PEO chains) Modified TraPPE potential for CH 3 O[CH 2 CH 2 O] n CH 3 Bond: FENE Angle: Modified 1 Dihedral: ( ) cos n U φ An ( φ) 5 = i= 1 n=2 Non-bonded: simulation Good agreement of transport properties with experiments (also see next page) experiment B. B. Hong, F. Escobedo, AZP, J. Chem. Eng. Data 50, , 2010
4 Transport properties of atomistic models for CH 3 O(CH 2 CH 2 O) n CH 3 Hong, Escobedo, AZP, J. Chem. Eng. Data, 55: (2010)
5 Coarse-Graining: PEO chains l Coarse-grained PEO [ ] CH O CH CH O CH [ CH 3 O CH ] CH O CH 2 [ 2 ] 3 n-mer (N+1)/2 bead chain l Bead-bead potential ( ) ( ) U + r = U r x k T 1 ln tgt i i B gi One CG bead g ( r) ( r) Iterative Boltzmann Inversion D. Reith, et al, J. Comput. Chem. 24, , 2003
6 Coarse-Graining: PEO chains Persistence length: ~ 0.46nm (~3.2 repeat units) l Harmonic bond potential bond Fitted equilibrated bond length between coarse-grained (CG) beads to the distance between two atomistic groups angle l Harmonic angle potential Determined from matching the end-to-end distance of long CG chains to atomistic simulations
7 End-to-end distance and structure of CG PEO chains 2 beads atomistic coarse-grained K 3 beads 5 beads Good transferability to other T s, chain lengths End-to-end distances at higher T are slightly smaller (chains less stiff). 2 beads 3 beads 5 beads g(r) K r/nm
8 Diffusivity of PEO chains Coarse-graining speeds up dynamics due to softer potentials which reduce the friction of cage escape. Speed-up factors depend on T Raising T or coarsegraining shortens the oligomer regime. Slope: ~ -2.5 (red squares) ~ -1.3 (others)
9 Coarse-graining: core particles Atomistic reference NOHMs: Integrated LJ 12 6 σ σ U( r) = ρρ dv 4ε dv ( ) U r ij ij i j I ij II i, j= Si, O r sphere I sphere II ij r ij 12 6 σ σ = ρ 4ε dv ij ij i ij I i= Si, O sphere I r ij r ij j = CH, CH, O 3 2 CH 3 CH 3 1 nm particle CH 3 2 nm particle CH 3
10 Semi-atomistic model: 1-center cores + full chains T (K) Red: 2 nm + 12x6-mer Blue: 2 nm + 12x12-mer Brown: 0.9 nm POSS +8x12mer (cp) simulations Experiments /T (K 1 ) x 10 3 Large number of interaction sites, slow relaxation Simulations only feasible at high T B. B. Hong, AZP, JPCB 116: (2012)
11 Core-bead CG interactions single core in atomistic and CG monomers. Iterative Boltzmann Inversion to fit core-bead g(r) at K
12 Core-core interactions also need to be adjusted coarse-grained atomistic 7 beads (13-mer) 3 beads (5-mer)
13 Corrected core-core interactions 3 beads (5-mer) 7 beads (13-mer) coarse-grained atomistic coarse-grained atomistic Smaller corrections for shorter grafted chains Poor transferability to different T s and chain lengths
14 Counter-intuitive core dynamics NOHMs with uncorrected potentials or short-chain NOHMs with corrected potentials diffuse more slowly 3 beads (5-mer) CG corrected atomistic CG uncorrected Cores grafted with longer chains CG diffuse faster 7 beads (13-mer) CG corrected atomistic CG uncorrected
15 Chain dynamics behave normally Particle + 13-mer Particle + 5-mer Core + 7-bd, corrected U Core + 3-bd, corrected U Core + 7-bd, uncorrected U Core + 3-bd, uncorrected U Coarse-graining speeds up chain relaxations chain motions are not the cause for core slow-down Core potentials have little effect on chain relaxation
16 Other possible causes for unexpected dynamics? l Chain extensions no different 3- bead NOHMs 7- bead NOHMs Uncorrected U 5 % longer 4 % longer Corrected U 4 % longer Within errors l Grafting topology g(r) data: space between neighbor cores (s) ~ 0.4 nm atom ~ 0.3 nm s bead ~ 0.65 nm atomistic segments rotate to fit; CG bead are too big
17 Cage escape dynamics ΔV b P. K. Depa and J. K. Maranas, J. Chem. Phys. 123: (2005). D. Fritz, K. Koschke, V. A. Harmandaris, N. F. A. van der Vegt, and K. Kremer, Phys. Chem. Chem. Phys. 13:10412 (2011) Softer potential faster cage escape
18 Integrand for acceleration factor Effects disappear after 2nd layer CG corrected CG uncorrected <ΔV b > > 0 for chains <ΔV b > < 0 for cores. Speedup or slowdown depends on core/chain content.
19 Ionic coarse-grained models Linear (NIMs-L) Stars (NIMs-S) Bead LJ parameters from T C & ρ C of CH 3 -O-CH 3 Electrostatic interactions : relative permittivity: κ = 4 (for SiO 2, PEG) V E (σ) = 35k B T
20 Core-core correlation functions 6 NOHMs NIMs L NIMs S g cc ( r ) r / nm
21 Dynamics: NIMs-S (chains not shown)
22 Diffusion of chains and cores MSD / nm NOHMs NIMs L core NIMs L chain NIMs S core NIMs S chain Unit Slope: D 10 8 cm 2 /s (NOHMs) 10 9 cm 2 /s (NIMs) η 0.1 Pa s (NOHMs) 1 Pa s (NIMs) t / ns
23 Canopy chain exchange
24 Canopy chain exchange kinetics 1 1 [n(t) n( )]/[n(0) n( )] 0.1 T [n(t) n( )]/[n(0) n( )] 0.1 chain length t (ns) t (ns) [n(t) n( )]/[n(0) n( )] 0.1 grafting density t (ns)
25 Conductivities < M J 2 >/6VkB T (S m 1 s) K 373 K 403 K 453 K < M J 2 >/6VkB T (S m 1 s) n = 5 n = 10 n = 20 < M J 2 >/6VkB T (S m 1 s) t (ps) g = 4 g = 8 g = t (ps) M J lim ΔM 2 J t t tc t (ps) ( t) = q i r c.m.i t i ( ) = lim ( ) [ ( )] 2 = 6Vk B Tσ( ω = 0) M J t t tc ( ) M J 0 [ ]t + 2 M J 2 simulated conductivity 2.5 times the value of polyoxometalates (POM(-)) grafted with two N(+)(CH 3 )(C 18 H 37 )[(EO) n ][(EO) m ] ( n+ m = 15) at 373 K.
26 Summary & discussion points Bulk PEO chains structural properties in good agreement with atomistic models diffusion coefficients increase by a nearly constant factor at high T only non-trivial scaling at low T NOHMs (non-ionic) Diffusion of nanoparticles can be slower in coarse-grained models under some conditions NIMs (ionic) insights on mechanism for fluidity + conductivity reasonable agreement with experiments using simple thermodynamic CG models Open question Is there a way to obtain dynamic scaling of CG models for complex nanoparticle / chain systems?
Soft Matter PAPER. Diffusivities, viscosities, and conductivities of solvent-free ionically grafted nanoparticles. 1 Introduction
PAPER View Journal View Issue Cite this:, 2013, 9, 6091 Received 22nd March 2013 Accepted 17th May 2013 DOI: 10.1039/c3sm50832c www.rsc.org/softmatter 1 Introduction Diffusivities, viscosities, and conductivities
More informationStructure and Dynamics of Polymeric Canopies in Nanoscale Ionic Materials: An Electrical Double Layer Perspective
www.nature.com/scientificreports Received: 14 December 2017 Accepted: 8 March 2018 Published: xx xx xxxx OPEN Structure and Dynamics of Polymeric Canopies in Nanoscale Ionic Materials: An Electrical Double
More informationOrigins of Mechanical and Rheological Properties of Polymer Nanocomposites. Venkat Ganesan
Department of Chemical Engineering University of Texas@Austin Origins of Mechanical and Rheological Properties of Polymer Nanocomposites Venkat Ganesan $$$: NSF DMR, Welch Foundation Megha Surve, Victor
More informationSupplementary Information for: Controlling Cellular Uptake of Nanoparticles with ph-sensitive Polymers
Supplementary Information for: Controlling Cellular Uptake of Nanoparticles with ph-sensitive Polymers Hong-ming Ding 1 & Yu-qiang Ma 1,2, 1 National Laboratory of Solid State Microstructures and Department
More informationA MOLECULAR DYNAMICS STUDY OF POLYMER/GRAPHENE NANOCOMPOSITES
A MOLECULAR DYNAMICS STUDY OF POLYMER/GRAPHENE NANOCOMPOSITES Anastassia N. Rissanou b,c*, Vagelis Harmandaris a,b,c* a Department of Applied Mathematics, University of Crete, GR-79, Heraklion, Crete,
More informationCoarse-Grained Models!
Coarse-Grained Models! Large and complex molecules (e.g. long polymers) can not be simulated on the all-atom level! Requires coarse-graining of the model! Coarse-grained models are usually also particles
More informationMechanical Properties of Tetra-Polyethylene and Tetra-Polyethylene Oxide Diamond Networks via Molecular Dynamics Simulations
Supplemental Information Mechanical Properties of Tetra-Polyethylene and Tetra-Polyethylene Oxide Diamond Networks via Molecular Dynamics Simulations Endian Wang and Fernando A. Escobedo Table S1 Lennard-Jones
More informationA Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane
A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane Supplementary Information: Simulation Procedure and Physical Property Analysis Simulation Procedure The molecular
More informationOn the Dynamics and Disentanglement in Thin and Two-Dimensional Polymer Films
J. Phys. IV France 1 (006) Pr1-1 c EDP Sciences, Les Ulis On the Dynamics and Disentanglement in Thin and Two-Dimensional Polymer Films H. Meyer, T. Kreer, A. Cavallo, J. P. Wittmer and J. Baschnagel 1
More informationPart III. Polymer Dynamics molecular models
Part III. Polymer Dynamics molecular models I. Unentangled polymer dynamics I.1 Diffusion of a small colloidal particle I.2 Diffusion of an unentangled polymer chain II. Entangled polymer dynamics II.1.
More informationSystematic Coarse-Graining and Concurrent Multiresolution Simulation of Molecular Liquids
Systematic Coarse-Graining and Concurrent Multiresolution Simulation of Molecular Liquids Cameron F. Abrams Department of Chemical and Biological Engineering Drexel University Philadelphia, PA USA 9 June
More informationSupporting information
Electronic Supplementary Material ESI for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2018 Supporting information Understanding three-body contributions to coarse-grained force
More informationIntroduction to Computer Simulations of Soft Matter Methodologies and Applications Boulder July, 19-20, 2012
Introduction to Computer Simulations of Soft Matter Methodologies and Applications Boulder July, 19-20, 2012 K. Kremer Max Planck Institute for Polymer Research, Mainz Overview Simulations, general considerations
More informationThe Molecular Dynamics Method
The Molecular Dynamics Method Thermal motion of a lipid bilayer Water permeation through channels Selective sugar transport Potential Energy (hyper)surface What is Force? Energy U(x) F = d dx U(x) Conformation
More informationMultiscale Materials Modeling
Multiscale Materials Modeling Lecture 06 Polymers These notes created by David Keffer, University of Tennessee, Knoxville, 2012. Outline Multiscale Modeling of Polymers I. Introduction II. Atomistic Simulation
More informationAdvantages of a Finite Extensible Nonlinear Elastic Potential in Lattice Boltzmann Simulations
The Hilltop Review Volume 7 Issue 1 Winter 2014 Article 10 December 2014 Advantages of a Finite Extensible Nonlinear Elastic Potential in Lattice Boltzmann Simulations Tai-Hsien Wu Western Michigan University
More informationMathematical and Computational Modelling of Molecular Systems
Mathematical and Computational Modelling of Molecular Systems Vagelis Harmandaris Institute of Applied and Computational Mathematics (IACM/FORTH), Heraklion, Greece 11 η Επιστημονική Διημερίδα ΙΤΕ MS:
More informationSUPPLEMENTAL MATERIAL
SUPPLEMENTAL MATERIAL Systematic Coarse-Grained Modeling of Complexation between Small Interfering RNA and Polycations Zonghui Wei 1 and Erik Luijten 1,2,3,4,a) 1 Graduate Program in Applied Physics, Northwestern
More informationNon equilibrium thermodynamics: foundations, scope, and extension to the meso scale. Miguel Rubi
Non equilibrium thermodynamics: foundations, scope, and extension to the meso scale Miguel Rubi References S.R. de Groot and P. Mazur, Non equilibrium Thermodynamics, Dover, New York, 1984 J.M. Vilar and
More informationAdaptive resolution molecular-dynamics simulation: Changing the degrees of freedom on the fly
THE JOURNAL OF CHEMICAL PHYSICS 123, 224106 2005 Adaptive resolution molecular-dynamics simulation: Changing the degrees of freedom on the fly Matej Praprotnik, a Luigi Delle Site, and Kurt Kremer b Max-Planck-Institut
More informationAnalysis of the simulation
Analysis of the simulation Marcus Elstner and Tomáš Kubař January 7, 2014 Thermodynamic properties time averages of thermodynamic quantites correspond to ensemble averages (ergodic theorem) some quantities
More informationCoarse-grained force field for simulating polymer-tethered silsesquioxane self-assembly in solution
THE JOURNAL OF CHEMICAL PHYSICS 127, 114102 2007 Coarse-grained force field for simulating polymer-tethered silsesquioxane self-assembly in solution Elaine R. Chan a Department of Chemical Engineering,
More informationExploring the Ability of a Coarse-grained Potential to Describe the Stress-strain Response of Glassy Polystyrene
Exploring the Ability of a Coarse-grained Potential to Describe the Stress-strain Response of Glassy Polystyrene by Thomas W. Rosch, John K. Brennan, Sergey Izvekov, and Jan W. Andzelm ARL-TR-6222 October
More informationV(φ) CH 3 CH 2 CH 2 CH 3. High energy states. Low energy states. Views along the C2-C3 bond
Example V(φ): Rotational conformations of n-butane C 3 C C C 3 Potential energy of a n-butane molecule as a function of the angle φ of bond rotation. V(φ) Potential energy/kj mol -1 0 15 10 5 eclipse gauche
More informationCHEM. Ch. 12 Notes ~ STATES OF MATTER
CHEM. Ch. 12 Notes ~ STATES OF MATTER NOTE: Vocabulary terms are in boldface and underlined. Supporting details are in italics. 12.1 topics States of Matter: SOLID, LIQUID, GAS, PLASMA I. Kinetic Theory
More informationDynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics
for resubmission Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics Aram Davtyan, 1 Gregory A. Voth, 1 2, a) and Hans
More informationAdaptive Resolution Simulations: Towards Open Systems Molecular Dynamics Simulations. K. Kremer Max Planck Institute for Polymer Research, Mainz
Adaptive Resolution Simulations: Towards Open Systems Molecular Dynamics Simulations K. Kremer Max Planck Institute for Polymer Research, Mainz ACMAC Crete * June, 30, 2011 COWORKERS: Luigi Delle Site
More informationPolymer Dynamics. Tom McLeish. (see Adv. Phys., 51, , (2002)) Durham University, UK
Polymer Dynamics Tom McLeish Durham University, UK (see Adv. Phys., 51, 1379-1527, (2002)) Boulder Summer School 2012: Polymers in Soft and Biological Matter Schedule Coarse-grained polymer physics Experimental
More informationInterfacial forces and friction on the nanometer scale: A tutorial
Interfacial forces and friction on the nanometer scale: A tutorial M. Ruths Department of Chemistry University of Massachusetts Lowell Presented at the Nanotribology Tutorial/Panel Session, STLE/ASME International
More informationUsing Molecular Dynamics to Compute Properties CHEM 430
Using Molecular Dynamics to Compute Properties CHEM 43 Heat Capacity and Energy Fluctuations Running an MD Simulation Equilibration Phase Before data-collection and results can be analyzed the system
More informationEQUATION OF STATE DEVELOPMENT
EQUATION OF STATE DEVELOPMENT I. Nieuwoudt* & M du Rand Institute for Thermal Separation Technology, Department of Chemical Engineering, University of Stellenbosch, Private bag X1, Matieland, 760, South
More informationSolid to liquid. Liquid to gas. Gas to solid. Liquid to solid. Gas to liquid. +energy. -energy
33 PHASE CHANGES - To understand solids and liquids at the molecular level, it will help to examine PHASE CHANGES in a little more detail. A quick review of the phase changes... Phase change Description
More informationFrom Dynamics to Thermodynamics using Molecular Simulation
From Dynamics to Thermodynamics using Molecular Simulation David van der Spoel Computational Chemistry Physical models to describe molecules Software to evaluate models and do predictions - GROMACS Model
More informationCOSMO-RS Theory. The Basics
Theory The Basics From µ to properties Property µ 1 µ 2 activity coefficient vapor pressure Infinite dilution Gas phase Pure compound Pure bulk compound Partition coefficient Phase 1 Phase 2 Liquid-liquid
More informationAn Extended van der Waals Equation of State Based on Molecular Dynamics Simulation
J. Comput. Chem. Jpn., Vol. 8, o. 3, pp. 97 14 (9) c 9 Society of Computer Chemistry, Japan An Extended van der Waals Equation of State Based on Molecular Dynamics Simulation Yosuke KATAOKA* and Yuri YAMADA
More informationKaren Johnston*, and Vagelis Harmandaris, INTRODUCTION
pubs.acs.org/macromolecules Hierarchical Multiscale Modeling of Polymer Solid Interfaces: Atomistic to Coarse-Grained Description and Structural and Conformational Properties of Polystyrene Gold Systems
More informationFirst steps toward the construction of a hyperphase diagram that covers different classes of short polymer chains
Cent. Eur. J. Phys. 12(6) 2014 421-426 DOI: 10.2478/s11534-014-0461-z Central European Journal of Physics First steps toward the construction of a hyperphase diagram that covers different classes of short
More informationDistribution of chains in polymer brushes produced by a grafting from mechanism
SUPPLEMENTARY INFORMATION Distribution of chains in polymer brushes produced by a grafting from mechanism Andre Martinez, Jan-Michael Y. Carrillo, Andrey V. Dobrynin,, * and Douglas H. Adamson, * Department
More informationGLASS Asst. Lect. Shireen Hasan
Collage of Engineering Materials Department Third Class Lecture (13) GLASS Asst. Lect. Shireen Hasan 6-3 transport properties: The transport property of glasses is controlled by the diffusion, or transport
More informationSimulation of Coarse-Grained Equilibrium Polymers
Simulation of Coarse-Grained Equilibrium Polymers J. P. Wittmer, Institut Charles Sadron, CNRS, Strasbourg, France Collaboration with: M.E. Cates (Edinburgh), P. van der Schoot (Eindhoven) A. Milchev (Sofia),
More informationMolecular Dynamics Simulation of a Nanoconfined Water Film
Molecular Dynamics Simulation of a Nanoconfined Water Film Kyle Lindquist, Shu-Han Chao May 7, 2013 1 Introduction The behavior of water confined in nano-scale environment is of interest in many applications.
More informationViscoelastic Flows in Abrupt Contraction-Expansions
Viscoelastic Flows in Abrupt Contraction-Expansions I. Fluid Rheology extension. In this note (I of IV) we summarize the rheological properties of the test fluid in shear and The viscoelastic fluid consists
More informationMD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky
MD Thermodynamics Lecture 1 3/6/18 1 Molecular dynamics The force depends on positions only (not velocities) Total energy is conserved (micro canonical evolution) Newton s equations of motion (second order
More informationCleaner Car Exhausts Using Ion-Exchanged Zeolites: Insights From Atomistic Simulations
CLEERS conference, Ann Arbor, Michigan 20 th September 2018 Cleaner Car Exhausts Using Ion-Exchanged Zeolites: Insights From Atomistic Simulations A Combined Quasi Elastic Neutron Scattering (QENS) and
More informationDirected Assembly of Functionalized Nanoparticles with Amphiphilic Diblock Copolymers. Contents
Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2017 Electronic Supplementary Information for Directed Assembly of Functionalized Nanoparticles
More informationDISCRETE TUTORIAL. Agustí Emperador. Institute for Research in Biomedicine, Barcelona APPLICATION OF DISCRETE TO FLEXIBLE PROTEIN-PROTEIN DOCKING:
DISCRETE TUTORIAL Agustí Emperador Institute for Research in Biomedicine, Barcelona APPLICATION OF DISCRETE TO FLEXIBLE PROTEIN-PROTEIN DOCKING: STRUCTURAL REFINEMENT OF DOCKING CONFORMATIONS Emperador
More informationMolecular Dynamics Simulation of Methanol-Water Mixture
Molecular Dynamics Simulation of Methanol-Water Mixture Palazzo Mancini, Mara Cantoni University of Urbino Carlo Bo Abstract In this study some properties of the methanol-water mixture such as diffusivity,
More informationHierarchical Metastable States and Kinetic Transition Networks: Trajectory Mapping and Clustering
Hierarchical Metastable States and Kinetic Transition Networks: Trajectory Mapping and Clustering Xin Zhou xzhou@gucas.ac.cn Graduate University of Chinese Academy of Sciences, Beijing 2012.6.5 KITP, Santa
More informationCE 530 Molecular Simulation
1 CE 530 Molecular Simulation Lecture 1 David A. Kofke Department of Chemical Engineering SUNY Buffalo kofke@eng.buffalo.edu 2 Time/s Multi-Scale Modeling Based on SDSC Blue Horizon (SP3) 1.728 Tflops
More informationComputing free energy: Thermodynamic perturbation and beyond
Computing free energy: Thermodynamic perturbation and beyond Extending the scale Length (m) 1 10 3 Potential Energy Surface: {Ri} 10 6 (3N+1) dimensional 10 9 E Thermodynamics: p, T, V, N continuum ls
More informationIsotropic-Nematic Behaviour of Semiflexible Polymers in the Bulk and under Confinement
Isotropic-Nematic Behaviour of Semiflexible Polymers in the Bulk and under Confinement S. Egorov 1, A. Milchev 2, P. Virnau 2 and K. Binder 2 1 University of Virginia 2 University of Mainz Outline Microscopic
More informationHierarchical Modeling of Polystyrene: From Atomistic to Coarse-Grained Simulations
6708 Macromolecules 2006, 39, 6708-6719 Hierarchical Modeling of Polystyrene: From Atomistic to Coarse-Grained Simulations V. A. Harmandaris, N. P. Adhikari, N. F. A. van der Vegt, and K. Kremer* Max Planck
More informationGlass-Transition and Side-Chain Dynamics in Thin Films: Explaining. Dissimilar Free Surface Effects for Polystyrene and Poly(methyl methacrylate)
Supporting Information for Glass-Transition and Side-Chain Dynamics in Thin Films: Explaining Dissimilar Free Surface Effects for Polystyrene and Poly(methyl methacrylate) David D. Hsu, Wenjie Xia, Jake
More informationLecture 8. Polymers and Gels
Lecture 8 Polymers and Gels Variety of polymeric materials Polymer molecule made by repeating of covalently joint units. Many of physical properties of polymers have universal characteristic related to
More informationMolecular Dynamics Investigation of Triethylene Glycol in Hydrated LTA Zeolite
U N I V E R S I T E T E T I B E R G E N Institute of Physics and Technology Molecular Dynamics Investigation of Triethylene Glycol in Hydrated LTA Zeolite Emphasis on Evaluation of Potential Models Bjørnar
More informationMultiscale simulations of complex fluid rheology
Multiscale simulations of complex fluid rheology Michael P. Howard, Athanassios Z. Panagiotopoulos Department of Chemical and Biological Engineering, Princeton University Arash Nikoubashman Institute of
More informationDensity Functional Modeling of Nanocrystalline Materials
Density Functional Modeling of Nanocrystalline Materials A new approach for modeling atomic scale properties in materials Peter Stefanovic Supervisor: Nikolas Provatas 70 / Part 1-7 February 007 Density
More informationHyeyoung Shin a, Tod A. Pascal ab, William A. Goddard III abc*, and Hyungjun Kim a* Korea
The Scaled Effective Solvent Method for Predicting the Equilibrium Ensemble of Structures with Analysis of Thermodynamic Properties of Amorphous Polyethylene Glycol-Water Mixtures Hyeyoung Shin a, Tod
More informationFile ISM02. Dynamics of Soft Matter
File ISM02 Dynamics of Soft Matter 1 Modes of dynamics Quantum Dynamics t: fs-ps, x: 0.1 nm (seldom of importance for soft matter) Molecular Dynamics t: ps µs, x: 1 10 nm Brownian Dynamics t: ns>ps, x:
More information2.1 Traditional and modern applications of polymers. Soft and light materials good heat and electrical insulators
. Polymers.1. Traditional and modern applications.. From chemistry to statistical description.3. Polymer solutions and polymer blends.4. Amorphous polymers.5. The glass transition.6. Crystalline polymers.7.
More informationDiffuse Interface Field Approach (DIFA) to Modeling and Simulation of Particle-based Materials Processes
Diffuse Interface Field Approach (DIFA) to Modeling and Simulation of Particle-based Materials Processes Yu U. Wang Department Michigan Technological University Motivation Extend phase field method to
More informationSupporting Information for. Dynamics of Architecturally Engineered All- Polymer Nanocomposites
Supporting Information for Dynamics of Architecturally Engineered All- Polymer Nanocomposites Erkan Senses,,,,* Madhusudan Tyagi,, Madeleine Pasco, Antonio Faraone,* NIST Center for Neutron Research, National
More informationSupporting Information
Projection of atomistic simulation data for the dynamics of entangled polymers onto the tube theory: Calculation of the segment survival probability function and comparison with modern tube models Pavlos
More information3.320 Lecture 23 (5/3/05)
3.320 Lecture 23 (5/3/05) Faster, faster,faster Bigger, Bigger, Bigger Accelerated Molecular Dynamics Kinetic Monte Carlo Inhomogeneous Spatial Coarse Graining 5/3/05 3.320 Atomistic Modeling of Materials
More informationOCR A GCSE Chemistry. Topic 2: Elements, compounds and mixtures. Properties of materials. Notes.
OCR A GCSE Chemistry Topic 2: Elements, compounds and mixtures Properties of materials Notes C2.3a recall that carbon can form four covalent bonds C2.3b explain that the vast array of natural and synthetic
More informationPHASE TRANSITIONS IN SOFT MATTER SYSTEMS
OUTLINE: Topic D. PHASE TRANSITIONS IN SOFT MATTER SYSTEMS Definition of a phase Classification of phase transitions Thermodynamics of mixing (gases, polymers, etc.) Mean-field approaches in the spirit
More informationCoupling the Level-Set Method with Variational Implicit Solvent Modeling of Molecular Solvation
Coupling the Level-Set Method with Variational Implicit Solvent Modeling of Molecular Solvation Bo Li Math Dept & CTBP, UCSD Li-Tien Cheng (Math, UCSD) Zhongming Wang (Math & Biochem, UCSD) Yang Xie (MAE,
More informationCE 530 Molecular Simulation
CE 530 Molecular Simulation Lecture 20 Phase Equilibria David A. Kofke Department of Chemical Engineering SUNY Buffalo kofke@eng.buffalo.edu 2 Thermodynamic Phase Equilibria Certain thermodynamic states
More informationSimulations of Self-Assembly of Polypeptide-Based Copolymers
East China University of Science and Technology Theory, Algorithms and Applications of Dissipative Particle Dynamics Simulations of Self-Assembly of Polypeptide-Based Copolymers Jiaping LIN ( 林嘉平 ) East
More informationDeconvoluting chain heterogeneity from driven translocation through a nano-pore
epl draft Deconvoluting chain heterogeneity from driven translocation through a nano-pore Department of Physics, University of Central Florida, Orlando, Florida 32826-238, USA PACS 87.1.ap First pacs description
More informationof Long-Term Transport
Atomistic Modeling and Simulation of Long-Term Transport Phenomena in Nanomaterials K.G. Wang, M. and M. Ortiz Virginia Polytechnic Institute and State University Universidad de Sevilla California Institute
More informationInstitut für Computerphysik U n i v e r s i t ä t S t u t t g a r t
Institut für Computerphysik U n i v e r s i t ä t S t u t t g a r t Masterthesis A Realistic DNA Model For Electrokinetic Applications Tobias Rau WS/SS 2014/2015 23.10.2015 Erstberichter: Prof. Dr. C.
More informationPhase Equilibria and Molecular Solutions Jan G. Korvink and Evgenii Rudnyi IMTEK Albert Ludwig University Freiburg, Germany
Phase Equilibria and Molecular Solutions Jan G. Korvink and Evgenii Rudnyi IMTEK Albert Ludwig University Freiburg, Germany Preliminaries Learning Goals Phase Equilibria Phase diagrams and classical thermodynamics
More informationSunyia Hussain 06/15/2012 ChE210D final project. Hydration Dynamics at a Hydrophobic Surface. Abstract:
Hydration Dynamics at a Hydrophobic Surface Sunyia Hussain 6/15/212 ChE21D final project Abstract: Water is the universal solvent of life, crucial to the function of all biomolecules. Proteins, membranes,
More informationOne- and two-particle microrheology in solutions of actin, fd-virus and inorganic rods
Microrheology of Biopolymers (ITP Complex Fluids Program 3/05/02) One- and two-particle microrheology in solutions of actin, fd-virus and inorganic rods Christoph Schmidt Vrije Universiteit Amsterdam Collaborators:
More informationMolecular Dynamics Simulations. Dr. Noelia Faginas Lago Dipartimento di Chimica,Biologia e Biotecnologie Università di Perugia
Molecular Dynamics Simulations Dr. Noelia Faginas Lago Dipartimento di Chimica,Biologia e Biotecnologie Università di Perugia 1 An Introduction to Molecular Dynamics Simulations Macroscopic properties
More informationDynamic modelling of morphology development in multiphase latex particle Elena Akhmatskaya (BCAM) and Jose M. Asua (POLYMAT) June
Dynamic modelling of morphology development in multiphase latex particle Elena Akhmatskaya (BCAM) and Jose M. Asua (POLYMAT) June 7 2012 Publications (background and output) J.M. Asua, E. Akhmatskaya Dynamic
More informationAdvanced Molecular Dynamics
Advanced Molecular Dynamics Introduction May 2, 2017 Who am I? I am an associate professor at Theoretical Physics Topics I work on: Algorithms for (parallel) molecular simulations including GPU acceleration
More informationCharge mobility of discotic mesophases: a multiscale quantum/
Charge mobility of discotic mesophases: a multiscale quantum/classical study Max Planck Institute for Polymer esearch LEA meeting Fundamental and Applied Macromolecular Science: Toward ext Generation Materials
More informationMACROSCOPIC VARIABLES, THERMAL EQUILIBRIUM. Contents AND BOLTZMANN ENTROPY. 1 Macroscopic Variables 3. 2 Local quantities and Hydrodynamics fields 4
MACROSCOPIC VARIABLES, THERMAL EQUILIBRIUM AND BOLTZMANN ENTROPY Contents 1 Macroscopic Variables 3 2 Local quantities and Hydrodynamics fields 4 3 Coarse-graining 6 4 Thermal equilibrium 9 5 Two systems
More informationBioengineering 215. An Introduction to Molecular Dynamics for Biomolecules
Bioengineering 215 An Introduction to Molecular Dynamics for Biomolecules David Parker May 18, 2007 ntroduction A principal tool to study biological molecules is molecular dynamics simulations (MD). MD
More informationBottom-up modelling of charge transport in organic semiconductors
Bottom-up modelling of charge transport in organic semiconductors David L. Cheung Department of Chemistry & Centre for Scientific Computing University of Warwick LCOPV 2010 Boulder 7th-10th August 2010
More informationElectronic Supplementary Information
Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2014 Electronic Supplementary Information Computational investigation of structural
More informationProteins polymer molecules, folded in complex structures. Konstantin Popov Department of Biochemistry and Biophysics
Proteins polymer molecules, folded in complex structures Konstantin Popov Department of Biochemistry and Biophysics Outline General aspects of polymer theory Size and persistent length of ideal linear
More informationJacob Klein Science 323, 47, p. 2
p. 1 Jacob Klein Science 323, 47, 2009 p. 2 BOTTLEBRUSH POLYMERS bond fluctuation model simulation SNAPSHOT Backbone chainlength N b = 131 grafting density σ = 1 side-chain length N = 6 p. 3 N b = 131
More informationPeptide folding in non-aqueous environments investigated with molecular dynamics simulations Soto Becerra, Patricia
University of Groningen Peptide folding in non-aqueous environments investigated with molecular dynamics simulations Soto Becerra, Patricia IMPORTANT NOTE: You are advised to consult the publisher's version
More informationTranslational and rotational dynamics in supercritical methanol from molecular dynamics simulation*
Pure Appl. Chem., Vol. 76, No. 1, pp. 203 213, 2004. 2004 IUPAC Translational and rotational dynamics in supercritical methanol from molecular dynamics simulation* Michalis Chalaris and Jannis Samios Physical
More information74 these states cannot be reliably obtained from experiments. In addition, the barriers between the local minima can also not be obtained reliably fro
73 Chapter 5 Development of Adiabatic Force Field for Polyvinyl Chloride (PVC) and Chlorinated PVC (CPVC) 5.1 Introduction Chlorinated polyvinyl chloride has become an important specialty polymer due to
More informationT. Egami. Model System of Dense Random Packing (DRP)
Introduction to Metallic Glasses: How they are different/similar to other glasses T. Egami Model System of Dense Random Packing (DRP) Hard Sphere vs. Soft Sphere Glass transition Universal behavior History:
More informationAn Implicit Divalent Counterion Force Field for RNA Molecular Dynamics
An Implicit Divalent Counterion Force Field for RNA Molecular Dynamics Paul S. Henke 1 1, 2, a and Chi H. Mak 1 Department of Chemistry and 2 Center of Applied Mathematical Sciences, University of Southern
More informationRouse chains, unentangled. entangled. Low Molecular Weight (M < M e ) chains shown moving past one another.
Physical Picture for Diffusion of Polymers Low Molecular Weight (M < M e ) chains shown moving past one another. Z X Y Rouse chains, unentangled Figure by MIT OCW. High Molecular weight (M > M e ) Entanglements
More informationStructure Analysis of Bottle-Brush Polymers: Simulation and Experiment
Jacob Klein Science 323, 47, 2009 Manfred Schmidt (Mainz) Structure Analysis of Bottle-Brush Polymers: Simulation and Experiment http://www.blueberryforest.com Hsiao-Ping Hsu Institut für Physik, Johannes
More informationAn efficient hybrid method for modeling lipid membranes with molecular resolution
An efficient hybrid method for modeling lipid membranes with molecular resolution G.J.A. (Agur) Sevink, M. Charlaganov & J.G.E.M Fraaije Soft Matter Chemistry Group, Leiden University, The Netherlands
More informationNanotube AFM Probe Resolution
Influence of Elastic Deformation on Single-Wall Carbon Nanotube AFM Probe Resolution Ian R. Shapiro, Santiago D. Solares, Maria J. Esplandiu, Lawrence A. Wade, William A. Goddard,* and C. Patrick Collier*
More informationComputer simulation methods (2) Dr. Vania Calandrini
Computer simulation methods (2) Dr. Vania Calandrini in the previous lecture: time average versus ensemble average MC versus MD simulations equipartition theorem (=> computing T) virial theorem (=> computing
More informationAccuracy, Transferability, and Efficiency of Coarse-Grained Models of Molecular Liquids
This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes. Cite This: pubs.acs.org/jpcb
More informationA Multi-Fluid Model of Membrane Formation by Phase-Inversion
A Multi-Fluid Model of Membrane Formation by Phase-Inversion Douglas R. Tree 1 and Glenn Fredrickson 1,2 1 Materials Research Laboratory 2 Departments of Chemical Engineering and Materials University of
More informationLong-Term Atomistic Simulation of Hydrogen Diffusion in Metals
Long-Term Atomistic Simulation of Hydrogen Diffusion in Metals K.G. Wang 1, M. and M. Ortiz 2 Universidad de Sevilla 1 Virginia Polytechnic Institute and State University 2 California Institute of Technology
More informationSOLIDS AND LIQUIDS - Here's a brief review of the atomic picture or gases, liquids, and solids GASES
30 SOLIDS AND LIQUIDS - Here's a brief review of the atomic picture or gases, liquids, and solids GASES * Gas molecules are small compared to the space between them. * Gas molecules move in straight lines
More information- As for the liquids, the properties of different solids often differ considerably. Compare a sample of candle wax to a sample of quartz.
32 SOLIDS * Molecules are usually packed closer together in the solid phase than in the gas or liquid phases. * Molecules are not free to move around each other as in the liquid phase. Molecular/atomic
More information