Glass-Transition and Side-Chain Dynamics in Thin Films: Explaining. Dissimilar Free Surface Effects for Polystyrene and Poly(methyl methacrylate)

Size: px
Start display at page:

Download "Glass-Transition and Side-Chain Dynamics in Thin Films: Explaining. Dissimilar Free Surface Effects for Polystyrene and Poly(methyl methacrylate)"

Transcription

1 Supporting Information for Glass-Transition and Side-Chain Dynamics in Thin Films: Explaining Dissimilar Free Surface Effects for Polystyrene and Poly(methyl methacrylate) David D. Hsu, Wenjie Xia, Jake Song, and Sinan Keten* * Corresponding Author: Dept. of Civil & Environmental Engineering and Dept. of Mechanical Engineering, Room A33, Northwestern University, 45 Sheridan Road, Evanston, IL Tel: , s-keten@northwestern.edu Simulation Methodology PS and PMMA coarse-grained CG models were generated using the thermomechanically consistent coarse-graining method (TCCG) with CG bead center locations shown in Figure A and resulting CG representation shown in Figure B in the main manuscript. Both models capture bulk material properties and chemical structural distributions in notable agreement with experiments and all-atomistic (AA) molecular dynamics (MD) simulations. These properties include bond distributions, molecular weight dependent glass transition temperature (T g ) as described by the Flory-Fox relationship, elastic modulus, characteristic ratio, and monomeric diffusion coefficients. The functional forms of the CG bonded and non-bonded potentials and their parameter values for the PS and PMMA models are listed in the Supplemental Tables S-S3. The detailed methodology used to develop CG parameters for these two systems is covered by our previous studies., Here we evaluate the ability for the aforementioned models developed from bulk atomistic simulations to demonstrate chemically specific glass transition behavior of free-standing thin films.

2 Table S. Functional form of force field and optimized potential parameters for PS. A random distribution of meso and racemo B-A-A-B dihedral potentials are applied along the CG chain to reproduce atactic stereoisometry as described in our previous study. Interaction Potential Form Parameters A-A Bond Length () k = 8.69 kcal/mol Å UbondAA l k l l l =.568 Å A-B Bond Length () k = 4.6 kcal/mol Å UbondAB l k l l l =.87 Å A-A-A Angle a =.77e- a = 5.588e- 3 UangleAAA ( ) kb T ln a exp a exp a3 exp b =.76 b = 9.7 b b b 3 θ = 77. θ = 48.8 A-A-B Angle a =.45e- a =.767e- 3 UangleAAB ( ) kb T ln a exp a exp a3 exp b = 6.76 b = b b b 3 θ = 4.5 θ = 93. A-A-A-A Dihedral Angle B-A-A-B Dihedral Angle Non-bonded U U ( ) cos( ) dihedralaaaa A A (atactic) =.5 (kcal/mol) 5 k dihedralbaab ( ) Ak cos ( ) k 6 Unonbond 4 SLJ ( r) r r meso A = 4.36 (kcal/mol) A = -.74 (kcal/mol) A 3 =.5337 (kcal/mol) A 4 = (kcal/mol) A 5 = -.46 (kcal/mol) (See Table 3) a 3 = e- b 3 = 8.78 θ 3 = 48.5 a 3 = 3.99e- b 3 =. θ 3 = 34.7 racemo A = 3.76 (kcal/mol) A =.363 (kcal/mol) A 3 =.8 (kcal/mol) A 4 = (kcal/mol) A 5 = -.88 (kcal/mol)

3 Table S. Functional form of force field and optimized potential parameters for PMMA as described in our previous study. Interaction Potential Form Parameters A-A Bond Length k = 5. kcal/mol Å UbondAA() l k l l, l =.735 Å A-B Bond Length k = kcal/mol Å UbondAB () l k l l, l = Å a =.94e-, a = 4.367e-3, UangleAAA ( ) kb T ln aexp aexp b = 9.493, b = 6., A-A-A Angle b b θ =. θ = A-A-B Angle U k k k A-A-A-A Dihedral Angle B-A-A-B Dihedral Angle Non-bonded angleaab ( ) U U 5 k dihedralaaaa ( ) Ak cos ( ) k 5 k dihedralbaab ( ) Ak cos ( ) k 6 Unonbond 4 SLJ ( r) r r k = 9.88 kcal/mol rad, k 3 = -5. kcal/mol rad 3, k 4 = kcal/mol rad 4, θ =.69 rads A = 4.38 (kcal/mol), A =.8739 (kcal/mol), A 3 = (kcal/mol), A 4 = (kcal/mol), A 5 =.93 (kcal/mol) A = 4.59 (kcal/mol), A = (kcal/mol), A 3 = -.69 (kcal/mol), A 4 =.565 (kcal/mol), A 5 =.956 (kcal/mol) (See Table 3) Table S3. Bead masses and non-bonded -6 LJ potential parameters for PS and PMMA, as described in our previous CG studies., Polymer System ma (g/mol) mb (g/mol) εaa (kcal/m ol) σaa (Angs) εbb (kcal/mol) σbb (Angs) εab (kcal/mol) σab (Angs) Polystyrene Poly(methyl methacrylate)

4 To compare PS and PMMA T g -confinement differences, we first generate bulk systems for PS and PMMA with periodic boundary conditions applied in all directions. The bulk systems contain 5 chains of repeat units per chain at the average literature end-to-end distance (6.7 nm and 6.5 nm for PS and PMMA, respectively) using a random-walk algorithm. The total energy is minimized using the conjugate gradient algorithm, 3 and subsequent annealing cycles are performed with the Nose-Hoover 4 NPT ensemble by cycling the temperature from to 75 K over a period of 4 ns until the energy and density of the system has converged. Free-standing thin film systems are generated by maintaining a 9 x 9 nm cross section that is periodic in the x and y directions and adjusting the number of chains to achieve nm to nm variable thickness conditions in the non-periodic z dimension. Vacuum above and below the polymer layer in the simulation box creates upper and lower film free-surfaces and allows the film thickness to deform freely. After energy minimization, the same annealing cycles as bulk simulations are applied to the film in the Nose-Hoover NVT ensemble until energy and thickness convergence is achieved. We use a timestep of 4 fs for all CG MD simulations and all results presented herein are an average of at least three independent samples per condition. All CG MD simulations are carried out using the LAMMPS molecular simulation package. 5 To evaluate the glass transition temperature and segmental structural relaxation of the polymer, the relaxed systems are heated to 5 K and then cooled in K increments at a step-wise rate of ~7 K/ns as described in our previous study. 6 The self-part of the intermediate scattering function, a measure of the dynamic interparticle correlation, is used to calculate the segmental relaxation time at each temperature and follows the equation: 7 N Fs ( q, t) exp[ iq ( rj ( t) rj ())] N j ()

5 where N is the total number of beads, q is the wave vector taken from the initial peak in the static structure factor and has a magnitude q of 5.9 nm -, rj denotes the time dependent j th particle position, and... represents the ensemble average. We note that usage of a different wave vector q was not found to qualitatively change the results. The resulting correlation function can be fitted using the Kohlrausch-Williams-Watts (KWW) stretched exponential function: KWW F ( q, t) C exp[ ( t / ) ] s KWW () where C and τ KWW are fitting parameters, and β KWW is the exponential stretch factor. The α- relaxation time τ α is estimated as the time where F s (q, t) decays to. and the temperature dependence of τ α can be fitted with the Vogel-Fulcher-Tammann (VFT) equation: 8 DT exp[ ] T T (3) where τ, T and D are fitting parameters and D also provides an estimate of the fragility. Finally, the computational T g is commonly calculated as the temperature at which the relaxation time reaches ns, 9 although we expect that modifying the relaxation time convention to another value near the same order of magnitude will not qualitatively affect our conclusions. This procedure has been extensively used in computational studies to estimate the T g for bulk and nanoscale thin film conditions and here, correlates reasonably well with experimental T g measurements. 7- The average standard deviation in T g measurements is less than ~3 K. We have also used additional methods to validate the T g estimations for the PS and PMMA models including utilizing the mean squared displacement (MSD) method described by Tsige and Taylor, as well as a specific volume methodology. 3 All of these methods give comparable estimates of the T g for our CG models. This procedure is also adopted to generate local relaxation time measurements along the z axis normal

6 to the surface. Specifically, we first generate the thin film with a larger cross sectional area (5 x 5 nm ) to allow for greater sampling. We then partition the film in nm thick layers along the z axis, and measure the relaxation time for each layer at T = T bulk g. We note that in order to compare the correlation lengths in Figure C, we had to use a thicker, 4 nm film for the PS curve, as the half-width of the 8 nm film is below the relaxation convergence length, whereas the PMMA 8 nm film does converge to the bulk relaxation time in the interior. Vibrational Analysis Additional Details The vibrational density of states (VDOS) Φ(ω) has been previously applied to glassy polymer simulations to help understand mechanisms governing changes in bulk and free-standing films such as fragility and local chain mobility differences. 4 For our study, Φ(ω) of CG systems can be calculated through the Fourier transform of the velocity autocorrelation function (VACF), and is expressed as: it ( ) dt e ( t) (4) where ω is the oscillation frequency, and ψ(t) is the VACF which is defined as: () t v() v(t) v() v() (5) where v is the time dependent velocity vector, and... represents the ensemble average. 5 The sampling frequency is commensurate with the simulation timestep. For a given temperature in the vibrational spectrum, the relative intensity of the VDOS peak as a function of frequency provides an indication of the dominant vibrational modes. In Figure 3, we calculate the VDOS near the bulk T g using the VACF shown in Figure S.

7 Figure S. Velocity autocorrelation function ψ(t) of the PS and PMMA side-chains near bulk T g shows larger correlation fluctuations for PMMA than for PS. The magnitude of VACF fluctuations is correlated with the amplitude of vibrations in Cartesian space. The major peak occurring at 9 THz for PMMA in Figure 3 corresponds to the backbone-side-chain bond stretching vibrational mode. An initial broad peak for PS occurring from to 8 THz corresponds to the various angle and dihedral bending vibrations. Likewise, in the PS VDOS, angle and torsion bending occurs at low frequencies ( 5 THz) and a minor peak near 6 THz indicates the backbone-side-chain stretching mode. The frequency of the backbone-side-chain peaks may be corroborated with the approximate frequency of a two-mass harmonic spring system using the CG bead masses and spring constant, where k/ m, and m is the reduced mass, m m m / m m. This yields 8. THz for PMMA and 5.4 THz for PS, which is in reasonable agreement with the peak frequencies. The relative size and intensity of the peak corresponding to the backbone-side-chain stretching mode for PS and PMMA spectra relates to the amplitude of bead fluctuations in Cartesian space for the dominant mode at a given frequency. This can be justified through the connection between the integral of the VACF and Cartesian motion, which, at long timescales quantitatively describes the diffusion coefficient D by the Green-Kubo formula,

8 D dt() t (6) where k T / m is the thermal speed and B () t is the VACF. We note that calculating the VDOS above or below the T g does not qualitatively change the reported results. The VDOS is also calculated in the all atom system for the CG defined side-chain bead force centers near the bulk T g, using the same methodology as described above (Figure 3 inset). Figure S. VDOS Φ(ω) of side-chains in arbitrary units for different mass ratio conditions are measured near bulk T g. The second peak in each spectrum is associated with the backbone-side-chain bond fluctuations. The magnitude of the peak is correlated with the amplitude of side-chain vibrations in Cartesian space, which demonstrates an increase with increasing mass ratio. (Color version can be found online) The VDOS is also calculated as a function of the PS model mass ratio (Figure S). As the mass ratio is increased from. to, the peak intensity associated with the backbone to side-chain bond stretching normal mode monotonically increases, shown in Figure 4B. Concurrently, the frequency of the backbone-side-chain stretching mode goes through a minimum at m A /m B =. In addition, the frequency for each mass ratio and its inverse are equal, which follows from the twomass spring frequency expression above.

9 REFERENCES. Hsu, D. D.; Xia, W.; Arturo, S. G.; Keten, S. J. Chem. Theory Comput. 4,, Hsu, D. D.; Xia, W.; Arturo, S. G.; Keten, S. Macromolecules Payne, M. C.; Teter, M. P.; Allan, D. C.; Arias, T.; Joannopoulos, J. Rev. Mod. Phys. 99, 64, Hoover, W. G. Phys. Rev. A 985, 3, Plimpton, S. J. Comput. Phys. 995, 7, Xia, W.; Hsu, D. D.; Keten, S. Macromol. Rapid Commun. 5, 36, Starr, F. W.; Douglas, J. F. Phys. Rev. Lett., 6, Lang, R. J.; Simmons, D. S. Macromolecules 3, 46, Marvin, M.; Lang, R.; Simmons, D. Soft Matter 4,, Hanakata, P. Z.; Douglas, J. F.; Starr, F. W. Nat. Commun. 4, 5.. Simmons, D. S.; Cicerone, M. T.; Zhong, Q.; Tyagi, M.; Douglas, J. F. Soft Matter, 8, Tsige, M.; Taylor, P. L. Phys. Rev. E, 65, Varshney, V.; Patnaik, S. S.; Roy, A. K.; Farmer, B. L. Macromolecules 8, 4, Jain, T. S.; de Pablo, J. J. J. Chem. Phys. 4,, Meyer, R.; Comtesse, D. Phys. Rev. B, 83, 43.

Supplementary Information for Atomistic Simulation of Spinodal Phase Separation Preceding Polymer Crystallization

Supplementary Information for Atomistic Simulation of Spinodal Phase Separation Preceding Polymer Crystallization Supplementary Information for Atomistic Simulation of Spinodal Phase Separation Preceding Polymer Crystallization Richard H. Gee * Naida Lacevic and Laurence E. Fried University of California Lawrence

More information

A MOLECULAR DYNAMICS STUDY OF POLYMER/GRAPHENE NANOCOMPOSITES

A MOLECULAR DYNAMICS STUDY OF POLYMER/GRAPHENE NANOCOMPOSITES A MOLECULAR DYNAMICS STUDY OF POLYMER/GRAPHENE NANOCOMPOSITES Anastassia N. Rissanou b,c*, Vagelis Harmandaris a,b,c* a Department of Applied Mathematics, University of Crete, GR-79, Heraklion, Crete,

More information

Supporting Information

Supporting Information Projection of atomistic simulation data for the dynamics of entangled polymers onto the tube theory: Calculation of the segment survival probability function and comparison with modern tube models Pavlos

More information

Supporting Information for. Dynamics of Architecturally Engineered All- Polymer Nanocomposites

Supporting Information for. Dynamics of Architecturally Engineered All- Polymer Nanocomposites Supporting Information for Dynamics of Architecturally Engineered All- Polymer Nanocomposites Erkan Senses,,,,* Madhusudan Tyagi,, Madeleine Pasco, Antonio Faraone,* NIST Center for Neutron Research, National

More information

Inhomogeneous elastic response of amorphous solids

Inhomogeneous elastic response of amorphous solids Inhomogeneous elastic response of amorphous solids Jean-Louis Barrat Université de Lyon Institut Universitaire de France Acknowledgements: Anne Tanguy, Fabien Chay Goldenberg, Léonforte, Michel Tsamados

More information

Multiscale Materials Modeling

Multiscale Materials Modeling Multiscale Materials Modeling Lecture 06 Polymers These notes created by David Keffer, University of Tennessee, Knoxville, 2012. Outline Multiscale Modeling of Polymers I. Introduction II. Atomistic Simulation

More information

Shear Properties and Wrinkling Behaviors of Finite Sized Graphene

Shear Properties and Wrinkling Behaviors of Finite Sized Graphene Shear Properties and Wrinkling Behaviors of Finite Sized Graphene Kyoungmin Min, Namjung Kim and Ravi Bhadauria May 10, 2010 Abstract In this project, we investigate the shear properties of finite sized

More information

Effect of different crosslink densities on the thermomechanical properties of polymer nanocomposites

Effect of different crosslink densities on the thermomechanical properties of polymer nanocomposites Effect of different crosslink densities on the thermomechanical properties of polymer nanocomposites *Byungjo Kim 1), Joonmyung Choi 2), Suyoung Yu 3), Seunghwa Yang 4) and Maenghyo Cho 5) 1), 2), 3),

More information

Development of Heterogeneity near the Glass Transition: Phenyl-Ring-Flip Motions in Polystyrene

Development of Heterogeneity near the Glass Transition: Phenyl-Ring-Flip Motions in Polystyrene Macromolecules 2007, 40, 6001-6011 6001 Development of Heterogeneity near the Glass Transition: Phenyl-Ring-Flip Motions in Polystyrene Bart Vorselaars,*, Alexey V. Lyulin,, and M. A. J. Michels, Group

More information

SUPPLEMENTAL MATERIAL

SUPPLEMENTAL MATERIAL SUPPLEMENTAL MATERIAL Systematic Coarse-Grained Modeling of Complexation between Small Interfering RNA and Polycations Zonghui Wei 1 and Erik Luijten 1,2,3,4,a) 1 Graduate Program in Applied Physics, Northwestern

More information

Polymers Dynamics by Dielectric Spectroscopy

Polymers Dynamics by Dielectric Spectroscopy Polymers Dynamics by Dielectric Spectroscopy What s a polymer bulk? A condensed matter system where the structural units are macromolecules Polymers Shape of a Macromolecule in the Bulk Flory's prediction

More information

Hyeyoung Shin a, Tod A. Pascal ab, William A. Goddard III abc*, and Hyungjun Kim a* Korea

Hyeyoung Shin a, Tod A. Pascal ab, William A. Goddard III abc*, and Hyungjun Kim a* Korea The Scaled Effective Solvent Method for Predicting the Equilibrium Ensemble of Structures with Analysis of Thermodynamic Properties of Amorphous Polyethylene Glycol-Water Mixtures Hyeyoung Shin a, Tod

More information

Diffusion of Water and Diatomic Oxygen in Poly(3-hexylthiophene) Melt: A Molecular Dynamics Simulation Study

Diffusion of Water and Diatomic Oxygen in Poly(3-hexylthiophene) Melt: A Molecular Dynamics Simulation Study Diffusion of Water and Diatomic Oxygen in Poly(3-hexylthiophene) Melt: A Molecular Dynamics Simulation Study Julia Deitz, Yeneneh Yimer, and Mesfin Tsige Department of Polymer Science University of Akron

More information

Molecular Dynamics Simulations. Dr. Noelia Faginas Lago Dipartimento di Chimica,Biologia e Biotecnologie Università di Perugia

Molecular Dynamics Simulations. Dr. Noelia Faginas Lago Dipartimento di Chimica,Biologia e Biotecnologie Università di Perugia Molecular Dynamics Simulations Dr. Noelia Faginas Lago Dipartimento di Chimica,Biologia e Biotecnologie Università di Perugia 1 An Introduction to Molecular Dynamics Simulations Macroscopic properties

More information

COMPLEX FLOW OF NANOCONFINED POLYMERS

COMPLEX FLOW OF NANOCONFINED POLYMERS COMPLEX FLOW OF NANOCONFINED POLYMERS Connie B. Roth, Chris A. Murray and John R. Dutcher Department of Physics University of Guelph Guelph, Ontario, Canada N1G 2W1 OUTLINE instabilities in freely-standing

More information

Relaxation Time, Diffusion, and Viscosity Analysis of Model Asphalt Systems Using Molecular Simulation

Relaxation Time, Diffusion, and Viscosity Analysis of Model Asphalt Systems Using Molecular Simulation University of Rhode Island DigitalCommons@URI Chemical Engineering Faculty Publications Chemical Engineering 2007 Relaxation Time, Diffusion, and Viscosity Analysis of Model Asphalt Systems Using Molecular

More information

Journal of Physics: Conference Series PAPER. To cite this article: Jiramate Kitjanon et al 2017 J. Phys.: Conf. Ser

Journal of Physics: Conference Series PAPER. To cite this article: Jiramate Kitjanon et al 2017 J. Phys.: Conf. Ser Journal of Physics: Conference Series PAPER Transferability of Polymer Chain Properties between Coarse-Grained and Atomistic Models of Natural Rubber Molecule Validated by Molecular Dynamics Simulations

More information

Supporting Information Soft Nanoparticles: Nano Ionic Networks of Associated Ionic Polymers

Supporting Information Soft Nanoparticles: Nano Ionic Networks of Associated Ionic Polymers Electronic Supplementary Material (ESI) for Nanoscale. This journal is The Royal Society of Chemistry 2016 Supporting Information Soft Nanoparticles: Nano Ionic Networks of Associated Ionic Polymers Dipak

More information

Supplementary Information for: Controlling Cellular Uptake of Nanoparticles with ph-sensitive Polymers

Supplementary Information for: Controlling Cellular Uptake of Nanoparticles with ph-sensitive Polymers Supplementary Information for: Controlling Cellular Uptake of Nanoparticles with ph-sensitive Polymers Hong-ming Ding 1 & Yu-qiang Ma 1,2, 1 National Laboratory of Solid State Microstructures and Department

More information

Title Dielectric relaxation of thin films. Citation PHYSICAL REVIEW E (2000), 61(2): 17.

Title Dielectric relaxation of thin films. Citation PHYSICAL REVIEW E (2000), 61(2): 17. Title Glass transitions and dynamics in t Dielectric relaxation of thin films Author(s) Fukao, K; Miyamoto, Y Citation PHYSICAL REVIEW E (2000), 61(2): 17 Issue Date 2000-02 URL http://hdl.handle.net/2433/50237

More information

Spatially heterogeneous dynamics in supercooled organic liquids

Spatially heterogeneous dynamics in supercooled organic liquids Spatially heterogeneous dynamics in supercooled organic liquids Stephen Swallen, Marcus Cicerone, Marie Mapes, Mark Ediger, Robert McMahon, Lian Yu UW-Madison NSF Chemistry 1 Image from Weeks and Weitz,

More information

Supporting Information for Effect of. Polymer/Solid and Polymer/Vapor. Instantaneous Interfaces on the Interfacial

Supporting Information for Effect of. Polymer/Solid and Polymer/Vapor. Instantaneous Interfaces on the Interfacial Supporting Information for Effect of Polymer/Solid and Polymer/Vapor Instantaneous Interfaces on the Interfacial Structure and Dynamics of Polymer Melt Systems Selemon Bekele and Mesfin Tsige Department

More information

Supplementary Information

Supplementary Information Supplementary Information Ballistic Thermal Transport in Carbyne and Cumulene with Micron-Scale Spectral Acoustic Phonon Mean Free Path Mingchao Wang and Shangchao Lin * Department of Mechanical Engineering,

More information

Instabilities in Thin Polymer Films: From Pattern Formation to Rupture

Instabilities in Thin Polymer Films: From Pattern Formation to Rupture Instabilities in Thin Polymer Films: From Pattern Formation to Rupture John R. Dutcher*, Kari Dalnoki-Veress Η, Bernie G. Nickel and Connie B. Roth Department of Physics, University of Guelph, Guelph,

More information

Nanotube AFM Probe Resolution

Nanotube AFM Probe Resolution Influence of Elastic Deformation on Single-Wall Carbon Nanotube AFM Probe Resolution Ian R. Shapiro, Santiago D. Solares, Maria J. Esplandiu, Lawrence A. Wade, William A. Goddard,* and C. Patrick Collier*

More information

Multi-scale studies of elastomer materials (in a tire tread) TERATEC 2013 Materials Science Session B. Schnell

Multi-scale studies of elastomer materials (in a tire tread) TERATEC 2013 Materials Science Session B. Schnell Multi-scale studies of elastomer materials (in a tire tread) TERATEC 13 Materials Science Session B. Schnell TERATEC - 6/6/13 Page : 1 / 7 Tire description A tire : a highly functional structure composed

More information

Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics

Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics for resubmission Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics Aram Davtyan, 1 Gregory A. Voth, 1 2, a) and Hans

More information

Crosslinking PMMA: Molecular Dynamics Investigation of the Shear Response

Crosslinking PMMA: Molecular Dynamics Investigation of the Shear Response FULL PAPER WWW.POLYMERPHYSICS.ORG JOURNAL OF POLYMER SCIENCE Crosslinking PMMA: Molecular Dynamics Investigation of the Shear Response Kyoungmin Min, 1,2 Meredith Silberstein, 2 N. R. Aluru 1,2 1 Department

More information

A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane

A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane Supplementary Information: Simulation Procedure and Physical Property Analysis Simulation Procedure The molecular

More information

On the Dynamics and Disentanglement in Thin and Two-Dimensional Polymer Films

On the Dynamics and Disentanglement in Thin and Two-Dimensional Polymer Films J. Phys. IV France 1 (006) Pr1-1 c EDP Sciences, Les Ulis On the Dynamics and Disentanglement in Thin and Two-Dimensional Polymer Films H. Meyer, T. Kreer, A. Cavallo, J. P. Wittmer and J. Baschnagel 1

More information

Spatially heterogeneous dynamics investigated via a time-dependent four-point density correlation function

Spatially heterogeneous dynamics investigated via a time-dependent four-point density correlation function JOURAL OF CHEMICAL PHYSICS VOLUME 119, UMBER 14 8 OCTOBER 2003 Spatially heterogeneous dynamics investigated via a time-dependent four-point density correlation function. Lačević Department of Chemical

More information

Supplementary Materials

Supplementary Materials Supplementary Materials Atomistic Origin of Brittle Failure of Boron Carbide from Large Scale Reactive Dynamics Simulations; Suggestions toward Improved Ductility Qi An and William A. Goddard III * Materials

More information

Ab Ini'o Molecular Dynamics (MD) Simula?ons

Ab Ini'o Molecular Dynamics (MD) Simula?ons Ab Ini'o Molecular Dynamics (MD) Simula?ons Rick Remsing ICMS, CCDM, Temple University, Philadelphia, PA What are Molecular Dynamics (MD) Simulations? Technique to compute statistical and transport properties

More information

Hands-on : Model Potential Molecular Dynamics

Hands-on : Model Potential Molecular Dynamics Hands-on : Model Potential Molecular Dynamics OUTLINE 0. DL_POLY code introduction 0.a Input files 1. THF solvent molecule 1.a Geometry optimization 1.b NVE/NVT dynamics 2. Liquid THF 2.a Equilibration

More information

Supporting Information. Influence of Vapor Deposition on Structural. and Charge Transport Properties of. Ethylbenzene Films

Supporting Information. Influence of Vapor Deposition on Structural. and Charge Transport Properties of. Ethylbenzene Films Supporting Information Influence of Vapor Deposition on Structural and Charge Transport Properties of Ethylbenzene Films Lucas W. Antony, Nicholas E. Jackson,, Ivan Lyubimov, Venkatram Vishwanath, Mark

More information

SUPPLEMENTARY INFORMATION An Empirical IR Frequency Map for Ester C=O Stretching Vibrations

SUPPLEMENTARY INFORMATION An Empirical IR Frequency Map for Ester C=O Stretching Vibrations SUPPLEMENTARY INFORMATION An Empirical IR Frequency Map for Ester C=O Stretching Vibrations Sean C. Edington, Jennifer C. Flanagan, Carlos R. Baiz* Department of Chemistry, University of Texas at Austin

More information

Ion-Gated Gas Separation through Porous Graphene

Ion-Gated Gas Separation through Porous Graphene Online Supporting Information for: Ion-Gated Gas Separation through Porous Graphene Ziqi Tian, Shannon M. Mahurin, Sheng Dai,*,, and De-en Jiang *, Department of Chemistry, University of California, Riverside,

More information

Energy Barriers and Rates - Transition State Theory for Physicists

Energy Barriers and Rates - Transition State Theory for Physicists Energy Barriers and Rates - Transition State Theory for Physicists Daniel C. Elton October 12, 2013 Useful relations 1 cal = 4.184 J 1 kcal mole 1 = 0.0434 ev per particle 1 kj mole 1 = 0.0104 ev per particle

More information

Dynamics of Supercooled Liquids The Generic Phase Diagram for Glasses

Dynamics of Supercooled Liquids The Generic Phase Diagram for Glasses Dynamics of Supercooled Liquids The Generic Phase Diagram for Glasses A normal liquid will crystallize at a melting temperature T m as it is cooled via a first-order phase transition (see figure above).

More information

Case study: molecular dynamics of solvent diffusion in polymers

Case study: molecular dynamics of solvent diffusion in polymers Course MP3 Lecture 11 29/11/2006 Case study: molecular dynamics of solvent diffusion in polymers A real-life research example to illustrate the use of molecular dynamics Dr James Elliott 11.1 Research

More information

Introduction to molecular dynamics

Introduction to molecular dynamics 1 Introduction to molecular dynamics Yves Lansac Université François Rabelais, Tours, France Visiting MSE, GIST for the summer Molecular Simulation 2 Molecular simulation is a computational experiment.

More information

MOLECULAR MODELING OF THERMOSETTING POLYMERS: EFFECTS OF DEGREE OF CURING AND CHAIN LENGTH ON THERMO-MECHANICAL PROPERTIES

MOLECULAR MODELING OF THERMOSETTING POLYMERS: EFFECTS OF DEGREE OF CURING AND CHAIN LENGTH ON THERMO-MECHANICAL PROPERTIES 18 TH INTERNATIONAL CONFERENCE ON COMPOSITE MATERIALS MOLECULAR MODELING OF THERMOSETTING POLYMERS: EFFECTS OF DEGREE OF CURING AND CHAIN LENGTH ON THERMO-MECHANICAL PROPERTIES N. B. Shenogina 1, M. Tsige

More information

Exploring the anomalous behavior of metal nanocatalysts with finite temperature AIMD and x-ray spectra

Exploring the anomalous behavior of metal nanocatalysts with finite temperature AIMD and x-ray spectra Exploring the anomalous behavior of metal nanocatalysts with finite temperature AIMD and x-ray spectra F.D. Vila DOE grant DE-FG02-03ER15476 With computer support from DOE - NERSC. Importance of Theoretical

More information

The Molecular Dynamics Method

The Molecular Dynamics Method The Molecular Dynamics Method Thermal motion of a lipid bilayer Water permeation through channels Selective sugar transport Potential Energy (hyper)surface What is Force? Energy U(x) F = d dx U(x) Conformation

More information

MD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky

MD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky MD Thermodynamics Lecture 1 3/6/18 1 Molecular dynamics The force depends on positions only (not velocities) Total energy is conserved (micro canonical evolution) Newton s equations of motion (second order

More information

Supporting information

Supporting information Electronic Supplementary Material ESI for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2018 Supporting information Understanding three-body contributions to coarse-grained force

More information

Polymers. Hevea brasiilensis

Polymers. Hevea brasiilensis Polymers Long string like molecules give rise to universal properties in dynamics as well as in structure properties of importance when dealing with: Pure polymers and polymer solutions & mixtures Composites

More information

Physics of disordered materials. Gunnar A. Niklasson Solid State Physics Department of Engineering Sciences Uppsala University

Physics of disordered materials. Gunnar A. Niklasson Solid State Physics Department of Engineering Sciences Uppsala University Physics of disordered materials Gunnar A. Niklasson Solid State Physics Department of Engineering Sciences Uppsala University Course plan Familiarity with the basic description of disordered structures

More information

Local Dynamics of cis-1,4-polybutadiene and cis-1,4-polyisoprene. A Comparative Study Based on Cooperative Kinematics Theory and NMR Experiments

Local Dynamics of cis-1,4-polybutadiene and cis-1,4-polyisoprene. A Comparative Study Based on Cooperative Kinematics Theory and NMR Experiments Macromolecules 1999, 32, 3017-3024 3017 Local Dynamics of cis-1,4-polybutadiene and cis-1,4-polyisoprene. A Comparative Study Based on Cooperative Kinematics Theory and NMR Experiments T. Z. Sen, I. Bahar,*,

More information

Part III : M6 Polymeric Materials

Part III : M6 Polymeric Materials 16/1/004 Part III : M6 Polymeric Materials Course overview, motivations and objectives Isolated polymer chains Dr James Elliott 1.1 Course overview Two-part course building on Part IB and II First 6 lectures

More information

hydrated Nafion-117 for fuel cell application

hydrated Nafion-117 for fuel cell application A molecular dynamics simulation study of oxygen within hydrated Nafion-117 for fuel cell application Jeffrey P. Fuller, Giuseppe F. Brunello, Seung Soon Jang School of Materials Science and Engineering

More information

A Molecular Modeling Approach to Predicting Thermo-Mechanical Properties of Thermosetting Polymers

A Molecular Modeling Approach to Predicting Thermo-Mechanical Properties of Thermosetting Polymers A Molecular Modeling Approach to Predicting Thermo-Mechanical Properties of Thermosetting Polymers Natalia Shenogina, Wright State University Mesfin Tsige, University of Akron Soumya Patnaik, AFRL Sharmila

More information

Statistical Thermodynamics Exercise 11 HS Exercise 11

Statistical Thermodynamics Exercise 11 HS Exercise 11 Exercise 11 Release: 412215 on-line Return: 1112215 your assistant Discussion: 1512215 your tutorial room Macromolecules (or polymers) are large molecules consisting of smaller subunits (referred to as

More information

Correlation between local structure and dynamic heterogeneity in a metallic glass-forming liquid

Correlation between local structure and dynamic heterogeneity in a metallic glass-forming liquid Correlation between local structure and dynamic heterogeneity in a metallic glass-forming liquid S. P. Pan a,b,*, S. D. Feng c, J. W. Qiao a,b, W. M. Wang d, and J. Y. Qin d a College of Materials Science

More information

Exploring the Ability of a Coarse-grained Potential to Describe the Stress-strain Response of Glassy Polystyrene

Exploring the Ability of a Coarse-grained Potential to Describe the Stress-strain Response of Glassy Polystyrene Exploring the Ability of a Coarse-grained Potential to Describe the Stress-strain Response of Glassy Polystyrene by Thomas W. Rosch, John K. Brennan, Sergey Izvekov, and Jan W. Andzelm ARL-TR-6222 October

More information

Polymer xxx (2012) 1e22. Contents lists available at SciVerse ScienceDirect. Polymer. journal homepage:

Polymer xxx (2012) 1e22. Contents lists available at SciVerse ScienceDirect. Polymer. journal homepage: Polymer xxx (2012) 1e22 Contents lists available at SciVerse ScienceDirect Polymer journal homepage: www.elsevier.com/locate/polymer Analysis of structural changes during plastic deformations of amorphous

More information

Improved Resolution of Tertiary Structure Elasticity in Muscle Protein

Improved Resolution of Tertiary Structure Elasticity in Muscle Protein Improved Resolution of Tertiary Structure Elasticity in Muscle Protein Jen Hsin and Klaus Schulten* Department of Physics and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, Illinois

More information

1,4-Polybutadiene Melt

1,4-Polybutadiene Melt 5192 Macromolecules 2001, 34, 5192-5199 13C NMR Spin-Lattice Relaxation and Conformational Dynamics in a 1,4-Polybutadiene Melt Grant D. Smith,* Oleg Borodin, and Dmitry Bedrov Department of Materials

More information

Coarse-Grained Models!

Coarse-Grained Models! Coarse-Grained Models! Large and complex molecules (e.g. long polymers) can not be simulated on the all-atom level! Requires coarse-graining of the model! Coarse-grained models are usually also particles

More information

Mechanical Properties of Tetra-Polyethylene and Tetra-Polyethylene Oxide Diamond Networks via Molecular Dynamics Simulations

Mechanical Properties of Tetra-Polyethylene and Tetra-Polyethylene Oxide Diamond Networks via Molecular Dynamics Simulations Supplemental Information Mechanical Properties of Tetra-Polyethylene and Tetra-Polyethylene Oxide Diamond Networks via Molecular Dynamics Simulations Endian Wang and Fernando A. Escobedo Table S1 Lennard-Jones

More information

Statistical Mechanics of Jamming

Statistical Mechanics of Jamming Statistical Mechanics of Jamming Lecture 1: Timescales and Lengthscales, jamming vs thermal critical points Lecture 2: Statistical ensembles: inherent structures and blocked states Lecture 3: Example of

More information

Analysis of the simulation

Analysis of the simulation Analysis of the simulation Marcus Elstner and Tomáš Kubař January 7, 2014 Thermodynamic properties time averages of thermodynamic quantites correspond to ensemble averages (ergodic theorem) some quantities

More information

How DLS Works: Interference of Light

How DLS Works: Interference of Light Static light scattering vs. Dynamic light scattering Static light scattering measures time-average intensities (mean square fluctuations) molecular weight radius of gyration second virial coefficient Dynamic

More information

Segmental Dynamics of Atactic Polypropylene As Revealed by Molecular Simulations and Quasielastic Neutron Scattering

Segmental Dynamics of Atactic Polypropylene As Revealed by Molecular Simulations and Quasielastic Neutron Scattering 7110 Macromolecules 2002, 35, 7110-7124 Segmental Dynamics of Atactic Polypropylene As Revealed by Molecular Simulations and Quasielastic Neutron Scattering Oscar Ahumada, Doros N. Theodorou,*,, Alessandro

More information

Hierarchical Modeling of Polystyrene: From Atomistic to Coarse-Grained Simulations

Hierarchical Modeling of Polystyrene: From Atomistic to Coarse-Grained Simulations 6708 Macromolecules 2006, 39, 6708-6719 Hierarchical Modeling of Polystyrene: From Atomistic to Coarse-Grained Simulations V. A. Harmandaris, N. P. Adhikari, N. F. A. van der Vegt, and K. Kremer* Max Planck

More information

Part III. Polymer Dynamics molecular models

Part III. Polymer Dynamics molecular models Part III. Polymer Dynamics molecular models I. Unentangled polymer dynamics I.1 Diffusion of a small colloidal particle I.2 Diffusion of an unentangled polymer chain II. Entangled polymer dynamics II.1.

More information

2.1 Traditional and modern applications of polymers. Soft and light materials good heat and electrical insulators

2.1 Traditional and modern applications of polymers. Soft and light materials good heat and electrical insulators . Polymers.1. Traditional and modern applications.. From chemistry to statistical description.3. Polymer solutions and polymer blends.4. Amorphous polymers.5. The glass transition.6. Crystalline polymers.7.

More information

Origins of Mechanical and Rheological Properties of Polymer Nanocomposites. Venkat Ganesan

Origins of Mechanical and Rheological Properties of Polymer Nanocomposites. Venkat Ganesan Department of Chemical Engineering University of Texas@Austin Origins of Mechanical and Rheological Properties of Polymer Nanocomposites Venkat Ganesan $$$: NSF DMR, Welch Foundation Megha Surve, Victor

More information

Sagar S. Rane, Wayne L. Mattice,* and Ali Dhinojwala

Sagar S. Rane, Wayne L. Mattice,* and Ali Dhinojwala 14830 J. Phys. Chem. B 2004, 108, 14830-14839 Atomistic Simulation of Orientation of Methyl Groups and Methylene Bisectors, and Surface Segregation, in Freely Standing Thin Films of Atactic Poly(ethylene-co-propylene)

More information

Supplementary Figure 1. Schematic of rapid thermal annealing process: (a) indicates schematics and SEM cross-section of the initial layer-by-layer

Supplementary Figure 1. Schematic of rapid thermal annealing process: (a) indicates schematics and SEM cross-section of the initial layer-by-layer Supplementary Figure 1. Schematic of rapid thermal annealing process: (a) indicates schematics and SEM cross-section of the initial layer-by-layer film configuration, (b) demonstrates schematic and cross-section

More information

Viscoelastic Flows in Abrupt Contraction-Expansions

Viscoelastic Flows in Abrupt Contraction-Expansions Viscoelastic Flows in Abrupt Contraction-Expansions I. Fluid Rheology extension. In this note (I of IV) we summarize the rheological properties of the test fluid in shear and The viscoelastic fluid consists

More information

CNT-reinforced polymer nanocomposite by molecular dynamics simulations

CNT-reinforced polymer nanocomposite by molecular dynamics simulations Purdue University Purdue e-pubs Open Access Dissertations Theses and Dissertations Fall 2014 CNT-reinforced polymer nanocomposite by molecular dynamics simulations Yaeji Kim Purdue University Follow this

More information

Fast and slow dynamics of hydrogen bonds in liquid water. Abstract

Fast and slow dynamics of hydrogen bonds in liquid water. Abstract Fast and slow dynamics of hydrogen bonds in liquid water Francis W. Starr 1, Johannes K. Nielsen 1,2 & H. Eugene Stanley 1 1 Center for Polymer Studies, Center for Computational Science, and Department

More information

ACMAC s PrePrint Repository

ACMAC s PrePrint Repository ACMAC s PrePrint Repository Properties of short polystyrene chains confined between two Gold surfaces through a combined Density Functional Theory and classical Molecular Dynamics approach Karen Johnston

More information

QENS in the Energy Domain: Backscattering and Time-of

QENS in the Energy Domain: Backscattering and Time-of QENS in the Energy Domain: Backscattering and Time-of of-flight Alexei Sokolov Department of Polymer Science, The University of Akron Outline Soft Matter and Neutron Spectroscopy Using elastic scattering

More information

STRUCTURAL AND MECHANICAL PROPERTIES OF AMORPHOUS SILICON: AB-INITIO AND CLASSICAL MOLECULAR DYNAMICS STUDY

STRUCTURAL AND MECHANICAL PROPERTIES OF AMORPHOUS SILICON: AB-INITIO AND CLASSICAL MOLECULAR DYNAMICS STUDY STRUCTURAL AND MECHANICAL PROPERTIES OF AMORPHOUS SILICON: AB-INITIO AND CLASSICAL MOLECULAR DYNAMICS STUDY S. Hara, T. Kumagai, S. Izumi and S. Sakai Department of mechanical engineering, University of

More information

Mesoscale Science and Technology

Mesoscale Science and Technology Mesoscale Science and Technology Classical Sciences Atomistic & Molecular Sciences Applications: - Lubrication - Photonics - Fuel Cells - Data Storage The realm of the Mesoscale fosters new perceptions

More information

PHYSICAL REVIEW B 68,

PHYSICAL REVIEW B 68, Downloaded from http://polymerphysics.net Connection between the high-frequency crossover of the temperature dependence of the relaxation time and the change of intermolecular coupling in glass-forming

More information

arxiv:cond-mat/ v1 [cond-mat.stat-mech] 8 Oct 1996

arxiv:cond-mat/ v1 [cond-mat.stat-mech] 8 Oct 1996 December 21, 2013 arxiv:cond-mat/9610066v1 [cond-mat.stat-mech] 8 Oct 1996 Some Finite Size Effects in Simulations of Glass Dynamics Jürgen Horbach, Walter Kob, Kurt Binder Institut für Physik, Johannes

More information

Universal Repulsive Contribution to the. Solvent-Induced Interaction Between Sizable, Curved Hydrophobes: Supporting Information

Universal Repulsive Contribution to the. Solvent-Induced Interaction Between Sizable, Curved Hydrophobes: Supporting Information Universal Repulsive Contribution to the Solvent-Induced Interaction Between Sizable, Curved Hydrophobes: Supporting Information B. Shadrack Jabes, Dusan Bratko, and Alenka Luzar Department of Chemistry,

More information

Quiz 1. Introduction to Polymers

Quiz 1. Introduction to Polymers 100406 Quiz 1. Introduction to Polymers 1) Polymers are different than low-molecular weight oligomers. For example an oligomeric polyethylene is wax, oligomeric polystyrene is similar to naphthalene (moth

More information

Chapter 6: The Rouse Model. The Bead (friction factor) and Spring (Gaussian entropy) Molecular Model:

Chapter 6: The Rouse Model. The Bead (friction factor) and Spring (Gaussian entropy) Molecular Model: G. R. Strobl, Chapter 6 "The Physics of Polymers, 2'nd Ed." Springer, NY, (1997). R. B. Bird, R. C. Armstrong, O. Hassager, "Dynamics of Polymeric Liquids", Vol. 2, John Wiley and Sons (1977). M. Doi,

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION SUPPLEMENTARY INFORMATION Supplementary Information Figure S1: (a) Initial configuration of hydroxyl and epoxy groups used in the MD calculations based on the observations of Cai et al. [Ref 27 in the

More information

Mathematical and Computational Modelling of Molecular Systems

Mathematical and Computational Modelling of Molecular Systems Mathematical and Computational Modelling of Molecular Systems Vagelis Harmandaris Institute of Applied and Computational Mathematics (IACM/FORTH), Heraklion, Greece 11 η Επιστημονική Διημερίδα ΙΤΕ MS:

More information

Determination of Kamlet-Taft parameters for selected solvate ionic liquids.

Determination of Kamlet-Taft parameters for selected solvate ionic liquids. Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2016 Determination of Kamlet-Taft parameters for selected solvate ionic liquids. Daniel

More information

Vagelis A. Harmandaris, Kostas Ch. Daoulas, and Vlasis G. Mavrantzas*

Vagelis A. Harmandaris, Kostas Ch. Daoulas, and Vlasis G. Mavrantzas* 5796 Macromolecules 2005, 38, 5796-5809 Molecular Dynamics Simulation of a Polymer Melt/Solid Interface: Local Dynamics and Chain Mobility in a Thin Film of Polyethylene Melt Adsorbed on Graphite Vagelis

More information

Molecular Dynamics Simulation Study of Transport Properties of Diatomic Gases

Molecular Dynamics Simulation Study of Transport Properties of Diatomic Gases MD Simulation of Diatomic Gases Bull. Korean Chem. Soc. 14, Vol. 35, No. 1 357 http://dx.doi.org/1.51/bkcs.14.35.1.357 Molecular Dynamics Simulation Study of Transport Properties of Diatomic Gases Song

More information

Supporting Materials

Supporting Materials Supporting Materials Figure S1 Experimental Setup Page Figure S (a) (b) (c) Feynman Diagrams Page 3-6 Figure S3 D IR Spectra Page 7 Figure S4 Kinetic Model Page 8 Figure S5 Van t Hoff Plots Page 9 1 k

More information

Modeling of polymer blends for automotive industry by multiscale molecular simulations

Modeling of polymer blends for automotive industry by multiscale molecular simulations Modeling of polymer blends for automotive industry by multiscale molecular simulations A. Coslanich 1, M. Fermeglia 1, M. Candus 2, L. Martinelli 2, S. Sinesi 2 1Computer-aided System Laboratory, Department

More information

General NMR basics. Solid State NMR workshop 2011: An introduction to Solid State NMR spectroscopy. # nuclei

General NMR basics. Solid State NMR workshop 2011: An introduction to Solid State NMR spectroscopy. # nuclei : An introduction to Solid State NMR spectroscopy Dr. Susanne Causemann (Solid State NMR specialist/ researcher) Interaction between nuclear spins and applied magnetic fields B 0 application of a static

More information

arxiv: v1 [cond-mat.mtrl-sci] 24 Jan 2012

arxiv: v1 [cond-mat.mtrl-sci] 24 Jan 2012 Effective Viscosity of Confined Hydrocarbons I.M. Sivebaek,2,3, V.N. Samoilov,4 and B.N.J. Persson IFF, FZ-Jülich, 52425 Jülich, Germany 2 Novo Nordisk A/S, Research and Development, DK4 Hillerod, Denmark

More information

Systematic Coarse-Graining and Concurrent Multiresolution Simulation of Molecular Liquids

Systematic Coarse-Graining and Concurrent Multiresolution Simulation of Molecular Liquids Systematic Coarse-Graining and Concurrent Multiresolution Simulation of Molecular Liquids Cameron F. Abrams Department of Chemical and Biological Engineering Drexel University Philadelphia, PA USA 9 June

More information

MSE 383, Unit 3-3. Joshua U. Otaigbe Iowa State University Materials Science & Engineering Dept.

MSE 383, Unit 3-3. Joshua U. Otaigbe Iowa State University Materials Science & Engineering Dept. Dynamic Mechanical Behavior MSE 383, Unit 3-3 Joshua U. Otaigbe Iowa State University Materials Science & Engineering Dept. Scope Why DMA & TTS? DMA Dynamic Mechanical Behavior (DMA) Superposition Principles

More information

Citation for published version (APA): Bulacu, M. I. (2008). Molecular dynamics studies of entangled polymer chains s.n.

Citation for published version (APA): Bulacu, M. I. (2008). Molecular dynamics studies of entangled polymer chains s.n. University of Groningen Molecular dynamics studies of entangled polymer chains Bulacu, Monica Iulia IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite

More information

Introduction to Computer Simulations of Soft Matter Methodologies and Applications Boulder July, 19-20, 2012

Introduction to Computer Simulations of Soft Matter Methodologies and Applications Boulder July, 19-20, 2012 Introduction to Computer Simulations of Soft Matter Methodologies and Applications Boulder July, 19-20, 2012 K. Kremer Max Planck Institute for Polymer Research, Mainz Overview Simulations, general considerations

More information

V(φ) CH 3 CH 2 CH 2 CH 3. High energy states. Low energy states. Views along the C2-C3 bond

V(φ) CH 3 CH 2 CH 2 CH 3. High energy states. Low energy states. Views along the C2-C3 bond Example V(φ): Rotational conformations of n-butane C 3 C C C 3 Potential energy of a n-butane molecule as a function of the angle φ of bond rotation. V(φ) Potential energy/kj mol -1 0 15 10 5 eclipse gauche

More information

Protein Dynamics, Allostery and Function

Protein Dynamics, Allostery and Function Protein Dynamics, Allostery and Function Lecture 3. Protein Dynamics Xiaolin Cheng UT/ORNL Center for Molecular Biophysics SJTU Summer School 2017 1 Obtaining Dynamic Information Experimental Approaches

More information

LAMMPS Performance Benchmark on VSC-1 and VSC-2

LAMMPS Performance Benchmark on VSC-1 and VSC-2 LAMMPS Performance Benchmark on VSC-1 and VSC-2 Daniel Tunega and Roland Šolc Institute of Soil Research, University of Natural Resources and Life Sciences VSC meeting, Neusiedl am See, February 27-28,

More information

Chemical Engineering 160/260 Polymer Science and Engineering. Lecture 14: Amorphous State February 14, 2001

Chemical Engineering 160/260 Polymer Science and Engineering. Lecture 14: Amorphous State February 14, 2001 Chemical Engineering 160/260 Polymer Science and Engineering Lecture 14: Amorphous State February 14, 2001 Objectives! To provide guidance toward understanding why an amorphous polymer glass may be considered

More information

1 Polymer Characterization

1 Polymer Characterization Electronic Supplementary Material (ESI) for Soft Matter. This journal is The Royal Society of Chemistry 2014 Electronic Supplementary Information (ESI) for: Depletion Layer in Polymer Solutions at an Interface

More information