Markov Chain Monte Carlo, Numerical Integration
|
|
|
- Mary Welch
- 6 years ago
- Views:
Transcription
1 Markov Chain Monte Carlo, Numerical Integration (See Statistics) Trevor Gallen Fall / 1
2 Agenda Numerical Integration: MCMC methods Estimating Markov Chains Estimating latent variables 2 / 1
3 Numerical Integration: Part II Quadrature for one to a few dimensions feasible for well-behaved distributions For many-dimensional integrals, we typically use Markov chain Monte Carlo There are many different methods I discuss a simple one (Gibbs Sampling) and a more complex one (Metropolis-Hastings) This is a prominent problem in Bayesian analysis 3 / 1
4 The Problem Say your data is summarized by a two-dimensional problem: height and weight f (x 1, x 2 ) You want a population, for i (1,..., n), (x i 1, x i 2 ) You have access to the conditional marginal distributions. That is, while f (x 1, x 2 ) is ugly, f (x 1 x 2 ) and f (x 2 x 1 ) are easy to sample from. 4 / 1
5 Gibbs Sampling 1. Start with (x 0 1, x 0 2 ) 2. Sample x 1 1 f (x 1 x 0 2 ) 3. Sample x 1 2 f (x 2 x 1 1 ) 4. We have a LLN and CLT that states that: 1 N N g(x i ) i=1 g(x)f (x)dx 5 / 1
6 Gibbs Sampling: Example Assume a distribution: x N (0, Σ) Σ = [ 1 ρ ρ 1 Then we can get the conditional marginal distributions: Iteratively sample from these. x 1 x 2 N ( ρx 2, (1 ρ) 2) x 2 x 1 N ( ρx 1, (1 ρ) 2) ] See Gibbs.m 6 / 1
7 Gibbs Sampling: Example 7 / 1
8 Gibbs Sampling: Example 8 / 1
9 Gibbs Sampling: Example 9 / 1
10 Gibbs Sampling: Example 10 / 1
11 Gibbs Sampling: Example 11 / 1
12 Gibbs Sampling: Example 12 / 1
13 Gibbs Sampling: Example 13 / 1
14 Gibbs Sampling: Example 14 / 1
15 Gibbs Sampling: Example 15 / 1
16 Gibbs Sampling: Example 16 / 1
17 Gibbs Sampling: Example 17 / 1
18 Gibbs Sampling: Example 18 / 1
19 Gibbs Sampling: Example 19 / 1
20 Gibbs Sampling: Example 20 / 1
21 Gibbs Sampling: Example 21 / 1
22 Gibbs Sampling: Example 22 / 1
23 Gibbs Sampling: Example 23 / 1
24 Gibbs Sampling: Example 24 / 1
25 Gibbs Sampling: Example 25 / 1
26 Gibbs Sampling: Example 26 / 1
27 Metropolis Hastings What if we can only evaluate likelihood at a given point? 1. We start with some (multi-dimensional) value x i and a proposal distribution g(x x i ) 2. Grab a new sample from our proposal distribution: x g(x x i ) 3. Calculate acceptance probability: { pr(x i, x ) = min 1, f (x ) g(x i x } ) f (x i ) g(x, x i ) 4. Accept the new value with probability pr(x i, x ), otherwise, stay there. 5. This again converges in distribution to the true distribution. 27 / 1
28 A convenient proposal density If our proposal density is symmetric g(x i x ) = g(x, x i ) This is called random-walk Metropolis-Hastings Our acceptance probability is easy: { pr(x i, x ) = min 1, f (x } ) f (x i ) 28 / 1
29 Metropolis-Hastings: Example Let s say our distribution is one-dimensional: x 0.5U(0, 1) U( 1, 2) U(0.5, 0.75) Choose sampling distribution centered around current point: g(x x) N (x, 0.1) 29 / 1
30 Sampling PDF Let s say our distribution is one-dimensional: x 0.5U(0, 1) U( 1, 2) U(0.5, 0.75) Choose sampling distribution centered around current point: g(x x) N (x, 0.1) 30 / 1
31 Metropolist-Hastings Random Walk: Example 31 / 1
32 Metropolist-Hastings Random Walk: Example 32 / 1
33 Metropolist-Hastings Random Walk: Example 33 / 1
34 Metropolist-Hastings Random Walk: Example 34 / 1
35 Metropolist-Hastings Random Walk: Example 35 / 1
36 Metropolist-Hastings Random Walk: Example 36 / 1
37 Metropolist-Hastings Random Walk: Example 37 / 1
38 Metropolist-Hastings Random Walk: Example 38 / 1
39 Metropolist-Hastings Random Walk: Example 39 / 1
40 Metropolist-Hastings Random Walk: Example 40 / 1
41 Metropolist-Hastings Random Walk: Example 41 / 1
42 Metropolist-Hastings Random Walk: Example 42 / 1
43 Metropolist-Hastings Random Walk: Example 43 / 1
44 Metropolist-Hastings Random Walk: Example 44 / 1
45 Metropolist-Hastings Random Walk: Example 45 / 1
46 Metropolist-Hastings Random Walk: Example 46 / 1
47 Metropolist-Hastings Random Walk: Example 47 / 1
48 Metropolist-Hastings Random Walk: Example 48 / 1
49 Metropolist-Hastings Random Walk: Example 49 / 1
50 Metropolist-Hastings Random Walk: Example 50 / 1
51 Metropolist-Hastings Random Walk: Example 51 / 1
52 Metropolist-Hastings Random Walk: Example 52 / 1
53 Metropolist-Hastings Random Walk: Example 53 / 1
54 Metropolist-Hastings Random Walk: Example 54 / 1
55 Metropolist-Hastings Random Walk: Example 55 / 1
56 Metropolist-Hastings Random Walk: Example 56 / 1
57 Metropolist-Hastings Random Walk: Example 57 / 1
58 Metropolist-Hastings Random Walk: Example 58 / 1
59 Metropolist-Hastings Random Walk: Example 59 / 1
60 Metropolist-Hastings Random Walk: Example 60 / 1
61 Sampling PDF Let s say our distribution is one-dimensional: x 0.5U(0, 1) U( 1, 2) U(0.5, 0.75) Choose sampling distribution centered around current point: g(x x) N (x, 0.1) 61 / 1
62 Why learn MH & Numerical Integration? Many-dimensional problems Bayesian estimation Write down model Write down distribution of parameters f (θ) Simulate many models to get model distribution of data f (x θ) Update your beliefs: f (θ x) f (θ)f (x θ) Typically need to draw from posterior distribution without an analytical calculation Use M-H 62 / 1
63 Aside: Multiple Hypothesis Testing and Maximum F-Statistics Data is tortured. When you see.....an experiment with multiple test groups or with without very strong theoretical justification, be skeptical!...a regression that could have been run differently, or with many potential controls, weighting options, and unit-of-observation choices, be skeptical! Not all bad: t-statistics might just be heuristics...when I see 0.01 in a regression where I could imagine 10 other setups, I know the real p-value is around 0.1. But we might want to take statistics seriously, or data-mine honestly We can simulate the distribution of the maximum F-statistic, or the maximum t-statistic. See MonteCarlo.do and similar exercises (Note: Stata!) 63 / 1
(5) Multi-parameter models - Gibbs sampling. ST440/540: Applied Bayesian Analysis
Summarizing a posterior Given the data and prior the posterior is determined Summarizing the posterior gives parameter estimates, intervals, and hypothesis tests Most of these computations are integrals
Monte Carlo in Bayesian Statistics
Monte Carlo in Bayesian Statistics Matthew Thomas SAMBa - University of Bath m.l.thomas@bath.ac.uk December 4, 2014 Matthew Thomas (SAMBa) Monte Carlo in Bayesian Statistics December 4, 2014 1 / 16 Overview
Tutorial on Probabilistic Programming with PyMC3
185.A83 Machine Learning for Health Informatics 2017S, VU, 2.0 h, 3.0 ECTS Tutorial 02-04.04.2017 Tutorial on Probabilistic Programming with PyMC3 florian.endel@tuwien.ac.at http://hci-kdd.org/machine-learning-for-health-informatics-course
MCMC and Gibbs Sampling. Kayhan Batmanghelich
MCMC and Gibbs Sampling Kayhan Batmanghelich 1 Approaches to inference l Exact inference algorithms l l l The elimination algorithm Message-passing algorithm (sum-product, belief propagation) The junction
Bayesian Inference in GLMs. Frequentists typically base inferences on MLEs, asymptotic confidence
Bayesian Inference in GLMs Frequentists typically base inferences on MLEs, asymptotic confidence limits, and log-likelihood ratio tests Bayesians base inferences on the posterior distribution of the unknowns
Bayesian Inference and MCMC
Bayesian Inference and MCMC Aryan Arbabi Partly based on MCMC slides from CSC412 Fall 2018 1 / 18 Bayesian Inference - Motivation Consider we have a data set D = {x 1,..., x n }. E.g each x i can be the
Principles of Bayesian Inference
Principles of Bayesian Inference Sudipto Banerjee University of Minnesota July 20th, 2008 1 Bayesian Principles Classical statistics: model parameters are fixed and unknown. A Bayesian thinks of parameters
BAYESIAN METHODS FOR VARIABLE SELECTION WITH APPLICATIONS TO HIGH-DIMENSIONAL DATA
BAYESIAN METHODS FOR VARIABLE SELECTION WITH APPLICATIONS TO HIGH-DIMENSIONAL DATA Intro: Course Outline and Brief Intro to Marina Vannucci Rice University, USA PASI-CIMAT 04/28-30/2010 Marina Vannucci
Markov Chain Monte Carlo
Markov Chain Monte Carlo Recall: To compute the expectation E ( h(y ) ) we use the approximation E(h(Y )) 1 n n h(y ) t=1 with Y (1),..., Y (n) h(y). Thus our aim is to sample Y (1),..., Y (n) from f(y).
Bayesian Methods for Machine Learning
Bayesian Methods for Machine Learning CS 584: Big Data Analytics Material adapted from Radford Neal s tutorial (http://ftp.cs.utoronto.ca/pub/radford/bayes-tut.pdf), Zoubin Ghahramni (http://hunch.net/~coms-4771/zoubin_ghahramani_bayesian_learning.pdf),
Computer Vision Group Prof. Daniel Cremers. 10a. Markov Chain Monte Carlo
Group Prof. Daniel Cremers 10a. Markov Chain Monte Carlo Markov Chain Monte Carlo In high-dimensional spaces, rejection sampling and importance sampling are very inefficient An alternative is Markov Chain
Sampling Algorithms for Probabilistic Graphical models
Sampling Algorithms for Probabilistic Graphical models Vibhav Gogate University of Washington References: Chapter 12 of Probabilistic Graphical models: Principles and Techniques by Daphne Koller and Nir
Markov chain Monte Carlo
1 / 26 Markov chain Monte Carlo Timothy Hanson 1 and Alejandro Jara 2 1 Division of Biostatistics, University of Minnesota, USA 2 Department of Statistics, Universidad de Concepción, Chile IAP-Workshop
LECTURE 15 Markov chain Monte Carlo
LECTURE 15 Markov chain Monte Carlo There are many settings when posterior computation is a challenge in that one does not have a closed form expression for the posterior distribution. Markov chain Monte
Bayesian Estimation with Sparse Grids
Bayesian Estimation with Sparse Grids Kenneth L. Judd and Thomas M. Mertens Institute on Computational Economics August 7, 27 / 48 Outline Introduction 2 Sparse grids Construction Integration with sparse
Metropolis Hastings. Rebecca C. Steorts Bayesian Methods and Modern Statistics: STA 360/601. Module 9
Metropolis Hastings Rebecca C. Steorts Bayesian Methods and Modern Statistics: STA 360/601 Module 9 1 The Metropolis-Hastings algorithm is a general term for a family of Markov chain simulation methods
Markov Chain Monte Carlo methods
Markov Chain Monte Carlo methods Tomas McKelvey and Lennart Svensson Signal Processing Group Department of Signals and Systems Chalmers University of Technology, Sweden November 26, 2012 Today s learning
Bayesian Regression Linear and Logistic Regression
When we want more than point estimates Bayesian Regression Linear and Logistic Regression Nicole Beckage Ordinary Least Squares Regression and Lasso Regression return only point estimates But what if we
SC7/SM6 Bayes Methods HT18 Lecturer: Geoff Nicholls Lecture 2: Monte Carlo Methods Notes and Problem sheets are available at http://www.stats.ox.ac.uk/~nicholls/bayesmethods/ and via the MSc weblearn pages.
Control Variates for Markov Chain Monte Carlo
Control Variates for Markov Chain Monte Carlo Dellaportas, P., Kontoyiannis, I., and Tsourti, Z. Dept of Statistics, AUEB Dept of Informatics, AUEB 1st Greek Stochastics Meeting Monte Carlo: Probability
MCMC: Markov Chain Monte Carlo
I529: Machine Learning in Bioinformatics (Spring 2013) MCMC: Markov Chain Monte Carlo Yuzhen Ye School of Informatics and Computing Indiana University, Bloomington Spring 2013 Contents Review of Markov
Markov Chain Monte Carlo Methods
Markov Chain Monte Carlo Methods p. /36 Markov Chain Monte Carlo Methods Michel Bierlaire michel.bierlaire@epfl.ch Transport and Mobility Laboratory Markov Chain Monte Carlo Methods p. 2/36 Markov Chains
Bayesian Phylogenetics:
Bayesian Phylogenetics: an introduction Marc A. Suchard msuchard@ucla.edu UCLA Who is this man? How sure are you? The one true tree? Methods we ve learned so far try to find a single tree that best describes
Session 3A: Markov chain Monte Carlo (MCMC)
Session 3A: Markov chain Monte Carlo (MCMC) John Geweke Bayesian Econometrics and its Applications August 15, 2012 ohn Geweke Bayesian Econometrics and its Session Applications 3A: Markov () chain Monte
Parameter estimation and forecasting. Cristiano Porciani AIfA, Uni-Bonn
Parameter estimation and forecasting Cristiano Porciani AIfA, Uni-Bonn Questions? C. Porciani Estimation & forecasting 2 Temperature fluctuations Variance at multipole l (angle ~180o/l) C. Porciani Estimation
Introduction to Markov Chain Monte Carlo & Gibbs Sampling
Introduction to Markov Chain Monte Carlo & Gibbs Sampling Prof. Nicholas Zabaras Sibley School of Mechanical and Aerospace Engineering 101 Frank H. T. Rhodes Hall Ithaca, NY 14853-3801 Email: zabaras@cornell.edu
Learning the hyper-parameters. Luca Martino
Learning the hyper-parameters Luca Martino 2017 2017 1 / 28 Parameters and hyper-parameters 1. All the described methods depend on some choice of hyper-parameters... 2. For instance, do you recall λ (bandwidth
Markov Chain Monte Carlo
1 Motivation 1.1 Bayesian Learning Markov Chain Monte Carlo Yale Chang In Bayesian learning, given data X, we make assumptions on the generative process of X by introducing hidden variables Z: p(z): prior
16 : Markov Chain Monte Carlo (MCMC)
10-708: Probabilistic Graphical Models 10-708, Spring 2014 16 : Markov Chain Monte Carlo MCMC Lecturer: Matthew Gormley Scribes: Yining Wang, Renato Negrinho 1 Sampling from low-dimensional distributions
Multilevel Statistical Models: 3 rd edition, 2003 Contents
Multilevel Statistical Models: 3 rd edition, 2003 Contents Preface Acknowledgements Notation Two and three level models. A general classification notation and diagram Glossary Chapter 1 An introduction
MCMC algorithms for fitting Bayesian models
MCMC algorithms for fitting Bayesian models p. 1/1 MCMC algorithms for fitting Bayesian models Sudipto Banerjee sudiptob@biostat.umn.edu University of Minnesota MCMC algorithms for fitting Bayesian models
CS242: Probabilistic Graphical Models Lecture 7B: Markov Chain Monte Carlo & Gibbs Sampling
CS242: Probabilistic Graphical Models Lecture 7B: Markov Chain Monte Carlo & Gibbs Sampling Professor Erik Sudderth Brown University Computer Science October 27, 2016 Some figures and materials courtesy
Lecture 6: Markov Chain Monte Carlo
Lecture 6: Markov Chain Monte Carlo D. Jason Koskinen koskinen@nbi.ku.dk Photo by Howard Jackman University of Copenhagen Advanced Methods in Applied Statistics Feb - Apr 2016 Niels Bohr Institute 2 Outline
STA 4273H: Statistical Machine Learning
STA 4273H: Statistical Machine Learning Russ Salakhutdinov Department of Computer Science! Department of Statistical Sciences! rsalakhu@cs.toronto.edu! h0p://www.cs.utoronto.ca/~rsalakhu/ Lecture 7 Approximate
Machine Learning for Data Science (CS4786) Lecture 24
Machine Learning for Data Science (CS4786) Lecture 24 Graphical Models: Approximate Inference Course Webpage : http://www.cs.cornell.edu/courses/cs4786/2016sp/ BELIEF PROPAGATION OR MESSAGE PASSING Each
Computer Practical: Metropolis-Hastings-based MCMC
Computer Practical: Metropolis-Hastings-based MCMC Andrea Arnold and Franz Hamilton North Carolina State University July 30, 2016 A. Arnold / F. Hamilton (NCSU) MH-based MCMC July 30, 2016 1 / 19 Markov
Down by the Bayes, where the Watermelons Grow
Down by the Bayes, where the Watermelons Grow A Bayesian example using SAS SUAVe: Victoria SAS User Group Meeting November 21, 2017 Peter K. Ott, M.Sc., P.Stat. Strategic Analysis 1 Outline 1. Motivating
MCMC Methods: Gibbs and Metropolis
MCMC Methods: Gibbs and Metropolis Patrick Breheny February 28 Patrick Breheny BST 701: Bayesian Modeling in Biostatistics 1/30 Introduction As we have seen, the ability to sample from the posterior distribution
The Metropolis-Hastings Algorithm. June 8, 2012
The Metropolis-Hastings Algorithm June 8, 22 The Plan. Understand what a simulated distribution is 2. Understand why the Metropolis-Hastings algorithm works 3. Learn how to apply the Metropolis-Hastings
Markov Chain Monte Carlo Inference. Siamak Ravanbakhsh Winter 2018
Graphical Models Markov Chain Monte Carlo Inference Siamak Ravanbakhsh Winter 2018 Learning objectives Markov chains the idea behind Markov Chain Monte Carlo (MCMC) two important examples: Gibbs sampling
F denotes cumulative density. denotes probability density function; (.)
BAYESIAN ANALYSIS: FOREWORDS Notation. System means the real thing and a model is an assumed mathematical form for the system.. he probability model class M contains the set of the all admissible models
The Particle Filter. PD Dr. Rudolph Triebel Computer Vision Group. Machine Learning for Computer Vision
The Particle Filter Non-parametric implementation of Bayes filter Represents the belief (posterior) random state samples. by a set of This representation is approximate. Can represent distributions that
I. Bayesian econometrics
I. Bayesian econometrics A. Introduction B. Bayesian inference in the univariate regression model C. Statistical decision theory D. Large sample results E. Diffuse priors F. Numerical Bayesian methods
Reminder of some Markov Chain properties:
Reminder of some Markov Chain properties: 1. a transition from one state to another occurs probabilistically 2. only state that matters is where you currently are (i.e. given present, future is independent
16 : Approximate Inference: Markov Chain Monte Carlo
10-708: Probabilistic Graphical Models 10-708, Spring 2017 16 : Approximate Inference: Markov Chain Monte Carlo Lecturer: Eric P. Xing Scribes: Yuan Yang, Chao-Ming Yen 1 Introduction As the target distribution
Monte Carlo Techniques for Regressing Random Variables. Dan Pemstein. Using V-Dem the Right Way
: Monte Carlo Techniques for Regressing Random Variables Workshop Goals (Re)familiarize you with Monte Carlo methods for estimating functions of random variables, integrating/marginalizing (Re)familiarize
Monte Carlo Methods. Leon Gu CSD, CMU
Monte Carlo Methods Leon Gu CSD, CMU Approximate Inference EM: y-observed variables; x-hidden variables; θ-parameters; E-step: q(x) = p(x y, θ t 1 ) M-step: θ t = arg max E q(x) [log p(y, x θ)] θ Monte
Markov Chain Monte Carlo Using the Ratio-of-Uniforms Transformation. Luke Tierney Department of Statistics & Actuarial Science University of Iowa
Markov Chain Monte Carlo Using the Ratio-of-Uniforms Transformation Luke Tierney Department of Statistics & Actuarial Science University of Iowa Basic Ratio of Uniforms Method Introduced by Kinderman and
Probabilistic Machine Learning
Probabilistic Machine Learning Bayesian Nets, MCMC, and more Marek Petrik 4/18/2017 Based on: P. Murphy, K. (2012). Machine Learning: A Probabilistic Perspective. Chapter 10. Conditional Independence Independent
Deblurring Jupiter (sampling in GLIP faster than regularized inversion) Colin Fox Richard A. Norton, J.
Deblurring Jupiter (sampling in GLIP faster than regularized inversion) Colin Fox fox@physics.otago.ac.nz Richard A. Norton, J. Andrés Christen Topics... Backstory (?) Sampling in linear-gaussian hierarchical
Calibration of Stochastic Volatility Models using Particle Markov Chain Monte Carlo Methods
Calibration of Stochastic Volatility Models using Particle Markov Chain Monte Carlo Methods Jonas Hallgren 1 1 Department of Mathematics KTH Royal Institute of Technology Stockholm, Sweden BFS 2012 June
Session 5B: A worked example EGARCH model
Session 5B: A worked example EGARCH model John Geweke Bayesian Econometrics and its Applications August 7, worked example EGARCH model August 7, / 6 EGARCH Exponential generalized autoregressive conditional
Likelihood-free MCMC
Bayesian inference for stable distributions with applications in finance Department of Mathematics University of Leicester September 2, 2011 MSc project final presentation Outline 1 2 3 4 Classical Monte
Part 1: Expectation Propagation
Chalmers Machine Learning Summer School Approximate message passing and biomedicine Part 1: Expectation Propagation Tom Heskes Machine Learning Group, Institute for Computing and Information Sciences Radboud
Advanced Statistical Modelling
Markov chain Monte Carlo (MCMC) Methods and Their Applications in Bayesian Statistics School of Technology and Business Studies/Statistics Dalarna University Borlänge, Sweden. Feb. 05, 2014. Outlines 1
Answers and expectations
Answers and expectations For a function f(x) and distribution P(x), the expectation of f with respect to P is The expectation is the average of f, when x is drawn from the probability distribution P E
Hierarchical models. Dr. Jarad Niemi. August 31, Iowa State University. Jarad Niemi (Iowa State) Hierarchical models August 31, / 31
Hierarchical models Dr. Jarad Niemi Iowa State University August 31, 2017 Jarad Niemi (Iowa State) Hierarchical models August 31, 2017 1 / 31 Normal hierarchical model Let Y ig N(θ g, σ 2 ) for i = 1,...,
Computational statistics
Computational statistics Markov Chain Monte Carlo methods Thierry Denœux March 2017 Thierry Denœux Computational statistics March 2017 1 / 71 Contents of this chapter When a target density f can be evaluated
Bayesian Estimation of DSGE Models 1 Chapter 3: A Crash Course in Bayesian Inference
1 The views expressed in this paper are those of the authors and do not necessarily reflect the views of the Federal Reserve Board of Governors or the Federal Reserve System. Bayesian Estimation of DSGE
Markov Chain Monte Carlo Methods
Markov Chain Monte Carlo Methods John Geweke University of Iowa, USA 2005 Institute on Computational Economics University of Chicago - Argonne National Laboaratories July 22, 2005 The problem p (θ, ω I)
The Ising model and Markov chain Monte Carlo
The Ising model and Markov chain Monte Carlo Ramesh Sridharan These notes give a short description of the Ising model for images and an introduction to Metropolis-Hastings and Gibbs Markov Chain Monte
Bayesian inference for multivariate extreme value distributions
Bayesian inference for multivariate extreme value distributions Sebastian Engelke Clément Dombry, Marco Oesting Toronto, Fields Institute, May 4th, 2016 Main motivation For a parametric model Z F θ of
Computer Vision Group Prof. Daniel Cremers. 11. Sampling Methods: Markov Chain Monte Carlo
Group Prof. Daniel Cremers 11. Sampling Methods: Markov Chain Monte Carlo Markov Chain Monte Carlo In high-dimensional spaces, rejection sampling and importance sampling are very inefficient An alternative
Bayesian Linear Regression
Bayesian Linear Regression Sudipto Banerjee 1 Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, U.S.A. September 15, 2010 1 Linear regression models: a Bayesian perspective
MH I. Metropolis-Hastings (MH) algorithm is the most popular method of getting dependent samples from a probability distribution
MH I Metropolis-Hastings (MH) algorithm is the most popular method of getting dependent samples from a probability distribution a lot of Bayesian mehods rely on the use of MH algorithm and it s famous
Lecture 8: Bayesian Estimation of Parameters in State Space Models
in State Space Models March 30, 2016 Contents 1 Bayesian estimation of parameters in state space models 2 Computational methods for parameter estimation 3 Practical parameter estimation in state space
Introduction to Machine Learning
Introduction to Machine Learning Brown University CSCI 1950-F, Spring 2012 Prof. Erik Sudderth Lecture 25: Markov Chain Monte Carlo (MCMC) Course Review and Advanced Topics Many figures courtesy Kevin
A Review of Pseudo-Marginal Markov Chain Monte Carlo
A Review of Pseudo-Marginal Markov Chain Monte Carlo Discussed by: Yizhe Zhang October 21, 2016 Outline 1 Overview 2 Paper review 3 experiment 4 conclusion Motivation & overview Notation: θ denotes the
Paul Karapanagiotidis ECO4060
Paul Karapanagiotidis ECO4060 The way forward 1) Motivate why Markov-Chain Monte Carlo (MCMC) is useful for econometric modeling 2) Introduce Markov-Chain Monte Carlo (MCMC) - Metropolis-Hastings (MH)
Eco517 Fall 2014 C. Sims MIDTERM EXAM
Eco57 Fall 204 C. Sims MIDTERM EXAM You have 90 minutes for this exam and there are a total of 90 points. The points for each question are listed at the beginning of the question. Answer all questions.
Pattern Recognition and Machine Learning
Christopher M. Bishop Pattern Recognition and Machine Learning ÖSpri inger Contents Preface Mathematical notation Contents vii xi xiii 1 Introduction 1 1.1 Example: Polynomial Curve Fitting 4 1.2 Probability
Forward Problems and their Inverse Solutions
Forward Problems and their Inverse Solutions Sarah Zedler 1,2 1 King Abdullah University of Science and Technology 2 University of Texas at Austin February, 2013 Outline 1 Forward Problem Example Weather
DAG models and Markov Chain Monte Carlo methods a short overview
DAG models and Markov Chain Monte Carlo methods a short overview Søren Højsgaard Institute of Genetics and Biotechnology University of Aarhus August 18, 2008 Printed: August 18, 2008 File: DAGMC-Lecture.tex
Markov chain Monte Carlo Lecture 9
Markov chain Monte Carlo Lecture 9 David Sontag New York University Slides adapted from Eric Xing and Qirong Ho (CMU) Limitations of Monte Carlo Direct (unconditional) sampling Hard to get rare events
Computer Vision Group Prof. Daniel Cremers. 11. Sampling Methods
Prof. Daniel Cremers 11. Sampling Methods Sampling Methods Sampling Methods are widely used in Computer Science as an approximation of a deterministic algorithm to represent uncertainty without a parametric
CPSC 540: Machine Learning
CPSC 540: Machine Learning MCMC and Non-Parametric Bayes Mark Schmidt University of British Columbia Winter 2016 Admin I went through project proposals: Some of you got a message on Piazza. No news is
Example: Ground Motion Attenuation
Example: Ground Motion Attenuation Problem: Predict the probability distribution for Peak Ground Acceleration (PGA), the level of ground shaking caused by an earthquake Earthquake records are used to update
Introduction to Machine Learning CMU-10701
Introduction to Machine Learning CMU-10701 Markov Chain Monte Carlo Methods Barnabás Póczos & Aarti Singh Contents Markov Chain Monte Carlo Methods Goal & Motivation Sampling Rejection Importance Markov
Reducing The Computational Cost of Bayesian Indoor Positioning Systems
Reducing The Computational Cost of Bayesian Indoor Positioning Systems Konstantinos Kleisouris, Richard P. Martin Computer Science Department Rutgers University WINLAB Research Review May 15 th, 2006 Motivation
Monte Carlo integration
Monte Carlo integration Eample of a Monte Carlo sampler in D: imagine a circle radius L/ within a square of LL. If points are randoml generated over the square, what s the probabilit to hit within circle?
Brief introduction to Markov Chain Monte Carlo
Brief introduction to Department of Probability and Mathematical Statistics seminar Stochastic modeling in economics and finance November 7, 2011 Brief introduction to Content 1 and motivation Classical
27 : Distributed Monte Carlo Markov Chain. 1 Recap of MCMC and Naive Parallel Gibbs Sampling
10-708: Probabilistic Graphical Models 10-708, Spring 2014 27 : Distributed Monte Carlo Markov Chain Lecturer: Eric P. Xing Scribes: Pengtao Xie, Khoa Luu In this scribe, we are going to review the Parallel
Markov chain Monte Carlo methods in atmospheric remote sensing
1 / 45 Markov chain Monte Carlo methods in atmospheric remote sensing Johanna Tamminen johanna.tamminen@fmi.fi ESA Summer School on Earth System Monitoring and Modeling July 3 Aug 11, 212, Frascati July,
CSC 2541: Bayesian Methods for Machine Learning
CSC 2541: Bayesian Methods for Machine Learning Radford M. Neal, University of Toronto, 2011 Lecture 3 More Markov Chain Monte Carlo Methods The Metropolis algorithm isn t the only way to do MCMC. We ll
Bayesian Methods in Multilevel Regression
Bayesian Methods in Multilevel Regression Joop Hox MuLOG, 15 september 2000 mcmc What is Statistics?! Statistics is about uncertainty To err is human, to forgive divine, but to include errors in your design
Eco517 Fall 2013 C. Sims MCMC. October 8, 2013
Eco517 Fall 2013 C. Sims MCMC October 8, 2013 c 2013 by Christopher A. Sims. This document may be reproduced for educational and research purposes, so long as the copies contain this notice and are retained
MCMC Sampling for Bayesian Inference using L1-type Priors
MÜNSTER MCMC Sampling for Bayesian Inference using L1-type Priors (what I do whenever the ill-posedness of EEG/MEG is just not frustrating enough!) AG Imaging Seminar Felix Lucka 26.06.2012 , MÜNSTER Sampling
High-dimensional Problems in Finance and Economics. Thomas M. Mertens
High-dimensional Problems in Finance and Economics Thomas M. Mertens NYU Stern Risk Economics Lab April 17, 2012 1 / 78 Motivation Many problems in finance and economics are high dimensional. Dynamic Optimization:
Probabilistic Graphical Networks: Definitions and Basic Results
This document gives a cursory overview of Probabilistic Graphical Networks. The material has been gleaned from different sources. I make no claim to original authorship of this material. Bayesian Graphical
Bayesian GLMs and Metropolis-Hastings Algorithm
Bayesian GLMs and Metropolis-Hastings Algorithm We have seen that with conjugate or semi-conjugate prior distributions the Gibbs sampler can be used to sample from the posterior distribution. In situations,
Stat 451 Lecture Notes Markov Chain Monte Carlo. Ryan Martin UIC
Stat 451 Lecture Notes 07 12 Markov Chain Monte Carlo Ryan Martin UIC www.math.uic.edu/~rgmartin 1 Based on Chapters 8 9 in Givens & Hoeting, Chapters 25 27 in Lange 2 Updated: April 4, 2016 1 / 42 Outline
Bayesian Estimation of Input Output Tables for Russia
Bayesian Estimation of Input Output Tables for Russia Oleg Lugovoy (EDF, RANE) Andrey Polbin (RANE) Vladimir Potashnikov (RANE) WIOD Conference April 24, 2012 Groningen Outline Motivation Objectives Bayesian
Computer Vision Group Prof. Daniel Cremers. 14. Sampling Methods
Prof. Daniel Cremers 14. Sampling Methods Sampling Methods Sampling Methods are widely used in Computer Science as an approximation of a deterministic algorithm to represent uncertainty without a parametric
CSC 2541: Bayesian Methods for Machine Learning
CSC 2541: Bayesian Methods for Machine Learning Radford M. Neal, University of Toronto, 2011 Lecture 4 Problem: Density Estimation We have observed data, y 1,..., y n, drawn independently from some unknown
TDA231. Logistic regression
TDA231 Devdatt Dubhashi dubhashi@chalmers.se Dept. of Computer Science and Engg. Chalmers University February 19, 2016 Some data 5 x2 0 5 5 0 5 x 1 In the Bayes classifier, we built a model of each class
Parallel Tempering I
Parallel Tempering I this is a fancy (M)etropolis-(H)astings algorithm it is also called (M)etropolis (C)oupled MCMC i.e. MCMCMC! (as the name suggests,) it consists of running multiple MH chains in parallel
STAT 425: Introduction to Bayesian Analysis
STAT 425: Introduction to Bayesian Analysis Marina Vannucci Rice University, USA Fall 2017 Marina Vannucci (Rice University, USA) Bayesian Analysis (Part 2) Fall 2017 1 / 19 Part 2: Markov chain Monte
Lecture 8: The Metropolis-Hastings Algorithm
30.10.2008 What we have seen last time: Gibbs sampler Key idea: Generate a Markov chain by updating the component of (X 1,..., X p ) in turn by drawing from the full conditionals: X (t) j Two drawbacks:
Markov Chains and MCMC
Markov Chains and MCMC CompSci 590.02 Instructor: AshwinMachanavajjhala Lecture 4 : 590.02 Spring 13 1 Recap: Monte Carlo Method If U is a universe of items, and G is a subset satisfying some property,
Bayesian Inference for DSGE Models. Lawrence J. Christiano
Bayesian Inference for DSGE Models Lawrence J. Christiano Outline State space-observer form. convenient for model estimation and many other things. Bayesian inference Bayes rule. Monte Carlo integation.