Antibiotic efflux pumps in eucaryotic cells: consequences for activity against intracellular bacteria

Size: px
Start display at page:

Download "Antibiotic efflux pumps in eucaryotic cells: consequences for activity against intracellular bacteria"

Transcription

1 Antibiotic efflux pumps in eucaryotic cells: consequences for activity against intracellular bacteria Françoise Van Bambeke on behalf of J.M. Michot, C. Seral, M. Heremans, M.P. Mingeot-Leclercq, P.M. Tulkens Unité de Pharmacologie cellulaire et moléculaire Université catholique de Louvain Brussels, Belgium

2 pharmacy

3 antibiotics as magic bullets already concerned in efflux?

4 Why drug efflux transporters? polar drug lipophilic drug physico-chemical properties are inadequate for reaching an intracellular target!

5 Why drug efflux transporters? amphipathic drug most drugs are amphipathic by design, to be able to cross membrane barriers!

6 Why drug efflux transporters? But a diffusible compound may have potentially harmful effects!

7 Why drug efflux transporters? Extrusion by efflux pumps

8 Why drug efflux transporters? Extrusion by efflux pumps general mean of protection against cell invasion by diffusible molecules

9 Typical toxic diffusible substances well known as substrates for efflux pumps antibiotics antifungals anticancer agents

10 Van Bambeke et al. Biochem. Pharmacol. (2000) 60: Most antibiotics are amphiphilic! cationic amphiphiles anionic amphiphiles macrolide tetracycline fluoroquinolone + + rifampicin - β-lactam fluoroquinolone + + lincosamide - fusidic acid sulfamide

11 Antibiotic classes recognized by efflux pumps in different types of organisms Antibiotic bacteria fungi superior class Gram (+) Gram(-) eucaryotes β-lactams fusidic acid macrolides streptogramins tetracyclines aminoglycosides chloramphenicol rifamycins sulfamides trimethoprim fluoroquinolones

12 Consequences of antibiotic efflux from eucaryotic cells alteration of pharmacokinetics whole organism: absorption, distribution, elimination single cell: accumulation, localization alteration of pharmacodynamics body level: drug concentration in the infected compartment cellular level: activity against intracellular bacteria Van Bambeke et al, JAC (2003) 51:

13 Main multidrug resistance efflux pumps in eucaryotic cells ATP ATP-binding Cassette (ABC) Superfamily ADP MDR-1 (P-glycoprotein) cationic amphiphiles MRP1-9 anionic amphiphiles

14 Inhibitors and substrates share the same physicochemical properties MDR-1 (P-glycoprotein) MRP1-9 cationic amphiphiles anionic amphiphiles OCH 3 OCH 3 3CO OCH 3 C 3 H 7 O - + NH N C 3 H 7 S O COO CH(CH 3 ) 2 CN CH 3 verapamil probenecid

15 Macrophages express at least MRP-1 and P-gp

16 1. Influence of efflux pumps on antibiotic cellular pharmacokinetics macrolides

17 Macrolide story CH 3 H 3 C N CH 3 OH OH H 3 C H 3 CH 2 C OH H 3 C O CH 3 (H 3 C) 2 N OHO O CH 3 O CH 3 O O H 3 CO CH 3 H 3 C OH Azithromycin is a dicationic amphiphilic molecule

18 Azithromycin accumulates to high levels in eucaryotic cells Seral et al, AAC (2003) 47:

19 macrolides accumulate mainly in the lysosomal compartment lysosomal enzymes Carlier et al, JAC (1987) 20 Suppl B:47-56

20 macrolide accumulation proceeds by diffusion / segregation B B B H + BH + BH + BH + De Duve et al, Biochem Pharmacol. (1974) 23:

21 Azithromycin concentration is high but still suboptimal Seral et al, AAC (2003) 47:

22 Inhibition of P-gp by verapamil increases accumulation Seral et al, AAC (2003) 47:

23 Inhibition of P-gp by verapamil increases accumulation and slightly slows down efflux Seral et al, AAC (2003) 47:

24 Similar effects are obtained with more specific inhibitors of P-gp Seral et al, AAC (2003) 47:

25 How can efflux pumps increase azithromycin accumulation without markedly affecting its efflux? mechanism of action of efflux pumps

26 Efflux pumps as pores? Probably not... Experimental evidences substrates and inhibitors are amphiphilic rates and kinetics of efflux are not directly related to the cytosolic drug content Higgins et al, Trends Biochem Sci (1992) 17:18-21 Wadkins et al, Biochem Biophys Acta (1993) 1153: Bolhuis et al, EMBO J (1996) 15: Ashida et al, J Theor Biol (1998) 195:

27 Efflux pumps as vacuum cleaners? Possibly... Structural evidence Rosenberg et al, JBC (1997) 272:

28 Efflux pumps as flippases? Possibly... X-Ray structure of the lipid A transporter from E. coli, an homolog of P-glycoprotein Chang et al, Science (2001) 293:

29 substrates potentially extruded from the membrane!

30 substrates potentially extruded from the membrane without having seen the cytosol! Marbeuf-Gueye et al (1999) BBA 1450:

31 2. Influence of efflux pumps on antibiotic cellular pharmacokinetics quinolones

32 Quinolone story O O F C O - H 2 N N N Ciprofloxacin is a zwitterionic amphiphilic molecule

33 Quinolones accumulate to moderate levels in eucaryotic cells Carlier et al JAC (1990) 26 Suppl B:27-39

34 Quinolones are found in the soluble fraction of cell homogenates LDH (cytosol) NABgase (lysosomes) proteins Carlier et al JAC (1990) 26 Suppl B:27-39

35 Ciprofloxacin facilitates its own uptake saturation of efflux! Michot et al, AAC (2004) 7: in press

36 Ciprofloxacin accumulation and efflux in ATP-depleted cells Michot et al, AAC (2004) 7: in press

37 Ciprofloxacin accumulation and efflux in probenecid-treated cells Michot et al, AAC (2004) 7: in press

38 Differential effects of pump inhibitors on ciprofloxacin and azithromycin accumulation data from Michot et al, AAC, 2004

39 Have all quinolones been made equal? ciprofloxacin O O moxifloxacin O O F C OH F C OH HN N N HN N OCH 3 N levofloxacin O O garenoxacin O O F C OH C OH H 3 C N N O N H CH 3 F 2 HC O N HN CH 3

40 Quinolones markedly differ by their accumulation level

41 contrasting effect of quinolone concentration on their accumulation

42 contrasting effect of ATP-depletion on quinolone accumulation

43 comparative effect of pump inhibition on quinolone accumulation 2 h incubation, 5 mg/l, inhibitors : 20 cellular accumulation Is this the max level of quinolone accumulation? control ATP-depletion probenecid gemfibrozil MK571 0 cipro levo gareno moxi

44 contrasting effect of temperature on quinolone accumulation cooling 2 h incubation, 5 mg/l, temperature : cellular accumulation C 4 C 78 % 45 % 55 % 18 % 0 cipro levo gareno moxi slowered diffusion through membranes

45 contrasting effect of temperature on quinolone accumulation heating 2 h incubation at 37 C, 17 mg/l, preexposure to 56 C: cellular accumulation Is this the max level of quinolone accumulation? 0 min 10 min active processes impaired in death cells 0 cipro moxi

46 quinolone accumulation is passive but efflux is active actual sorting site may be at the cell surface

47 accumulation is inversely related to recognition by efflux transporters ciprofloxacin moxifloxacin Is the amount of drug reaching the cellular medium high enough to kill intracellular bacteria?

48 3. Influence of efflux pumps on antibiotic cellular pharmacodynamics

49 Does efflux from macrophages confer resistance against intracellular infections? Carryn et al, Infect Dis Clin North Am. (2003) 17:615-34

50 Does efflux affect the intracellular activity of these antibiotics? Listeria monocytogenes Staphylococcus aureus

51 Verapamil increases azithromycin activity against L. monocytogenes L. monocytogenes AZM AZM Seral et al, JAC (2003) 51:

52 Verapamil increases azithromycin activity against S. aureus S. aureus AZM AZM Seral et al, JAC (2003) 51:

53 Verapamil increases azithromycin conc. both in the soluble and granular fractions Seral et al, JAC (2003) 51:

54 Gemfibrozil increases ciprofloxacin activity against L. monocytogenes L. monocytogenes CIP Seral et al, JAC (2003) 51:

55 Gemfibrozil does not increases ciprofloxacin activity against S. aureus S. aureus CIP Seral et al, JAC (2003) 51:

56 Gemfibrozil increases ciprofloxacin conc. in the soluble fraction only Seral et al, JAC (2003) 51:

57 Inhibition of efflux pumps may increase antibiotic activity in the compartments where they accumulate CIP AZM AZM

58 Strategies for the future of antibiotherapy of intracellular infections use of poor substrates of efflux pumps (moxi vs cipro) caution for «cross resistance» with other substrates (over expression of efflux pumps) development of specific inhibitors of efflux pumps

59 moxi/gareno are more active than cipro/levo against L. monocytogenes et S. aureus

60 Strategies for the future of antibiotherapy of intracellular infections use of poor substrates of efflux pumps (moxi vs cipro) caution for «cross resistance» with other substrates (over expression of efflux pumps) development of specific inhibitors of efflux pumps

61 Over-expression of efflux pumps as mechanism of resistance anticancer agent antibiotic????? antibiotic anticancer agent????? anticancer agent antibiotic?????

62 Ciprofloxacin selects over-expression of efflux pumps as mechanism of resistance 2 h incubation at 37 C 10 macrophages exposed to increasing conc. of cipro (up to 80 mg/l)

63 Strategies for the future of antibiotherapy of intracellular infections use of poor substrates of efflux pumps (moxi vs cipro) caution for «cross resistance» with other substrates (over expression of efflux pumps) development of specific inhibitors of efflux pumps

64 Inhibitors of efflux transporters should help you to keep your stuff in...

65 Inhibitors of efflux transporters But be careful not to turn off a useful pump...

66 F Van Bambeke JM Michot C Seral M Heremans MP Mingeot- Leclercq PM Tulkens come and see us at <

Antibiotic efflux pumps in eucaryotic cells: consequences for activity against intracellular bacteria

Antibiotic efflux pumps in eucaryotic cells: consequences for activity against intracellular bacteria Antibiotic efflux pumps in eucaryotic cells: consequences for activity against intracellular bacteria Unité de Pharmacologie cellulaire et moléculaire F. Van Bambeke Magic bullets need to reach their target

More information

Antibiotic accumulation and efflux in eukaryotic cells: a journey at the frontier of pharmacokinetics and pharmacodynamics

Antibiotic accumulation and efflux in eukaryotic cells: a journey at the frontier of pharmacokinetics and pharmacodynamics corpora non agunt nisi fixata Ehrlich s magic bullet theory Antibiotic accumulation and efflux in eukaryotic cells: a journey at the frontier of pharmacokinetics and pharmacodynamics Unité de Pharmacologie

More information

New developments in PK/PD

New developments in PK/PD Asian PK/PD Educational Workshop New developments in PK/PD drug transport in eucaryotic cells difficult-to-reach compartments intracellular infections This part uses material from presentations made at

More information

Efflux Mechanisms of Fluoroquinolones and β-lactams

Efflux Mechanisms of Fluoroquinolones and β-lactams Efflux Mechanisms of Fluoroquinolones and β-lactams Paul M. Tulkens, MD, PhD Françoise Van Bambeke, PharmD, PhD Cellular and Molecular Pharmacology Unit Catholic University of Louvain, Brussels, Belgium

More information

Antibiotic resistance by efflux: from molecular aspects to cinical impact

Antibiotic resistance by efflux: from molecular aspects to cinical impact 16-09-2013 University of Notre-Dame, Notre Dame, IN 1 Antibiotic resistance by efflux: from molecular aspects to cinical impact Françoise Van Bambeke & Paul M. Tulkens Pharmacologie cellulaire et moléculaire

More information

Why is it so hard to discover develop antibacterial drugs for Gram negative bacteria? Lynn L. Silver, Ph.D. LL Silver Consulting, LLC

Why is it so hard to discover develop antibacterial drugs for Gram negative bacteria? Lynn L. Silver, Ph.D. LL Silver Consulting, LLC Why is it so hard to discover develop antibacterial drugs for Gram negative bacteria? Lynn L. Silver, Ph.D. LL Silver Consulting, LLC 2 The Innovation gap in novel classes Obscures the Discovery void 1940

More information

Antibiotics efflux pumps: from biology to clinical implications (and applications?)

Antibiotics efflux pumps: from biology to clinical implications (and applications?) Antibiotics efflux pumps: from biology to clinical implications (and applications?) Paul M. Tulkens, MD, PhD Cellular and Molecular Pharmacology & Center for Clinical Pharmacy Louvain Drug Research Institute,

More information

Objectives. Epidemiology of AB resistance in S. pneumoniae. Pasteur Institute (R. Vanhoof) AB resistance evaluation (MIC) & mechanisms

Objectives. Epidemiology of AB resistance in S. pneumoniae. Pasteur Institute (R. Vanhoof) AB resistance evaluation (MIC) & mechanisms Epidemiological survey of susceptibility to β-lactams, macrolides, and fluoroquinolones in a Belgian collection of Streptococcus pneumoniae isolated from patients with CAP A. Lismond, S. Carbonnelle, F.

More information

Membrane transport 1. Summary

Membrane transport 1. Summary Membrane transport 1. Summary A. Simple diffusion 1) Diffusion by electrochemical gradient no energy required 2) No channel or carrier (or transporter protein) is needed B. Passive transport (= Facilitated

More information

Effluxpumpeninhibitoren alternative Therapiestrategie bei mikrobieller Multiresistenz

Effluxpumpeninhibitoren alternative Therapiestrategie bei mikrobieller Multiresistenz Department of Clinical Pharmacology Effluxpumpeninhibitoren alternative Therapiestrategie bei mikrobieller Multiresistenz Markus Zeitlinger Clinical resistancy I MIC time Clinical resistancy II MIC time

More information

Active Efflux of Ciprofloxacin from J774 Macrophages through an MRP-Like Transporter

Active Efflux of Ciprofloxacin from J774 Macrophages through an MRP-Like Transporter ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, July 2004, p. 2673 2682 Vol. 48, No. 7 0066-4804/04/$08.00 0 DOI: 10.1128/AAC.48.7.2673 2682.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved.

More information

CELL STRUCTURE & FUNCTION

CELL STRUCTURE & FUNCTION 7-1 Life Is Cellular CELL STRUCTURE & FUNCTION Copyright Pearson Prentice Hall The Discovery of the Cell 1665: Robert Hooke used an early compound microscope to look at a thin slice of cork. Cork looked

More information

CELL BIOLOGY - CLUTCH CH. 9 - TRANSPORT ACROSS MEMBRANES.

CELL BIOLOGY - CLUTCH CH. 9 - TRANSPORT ACROSS MEMBRANES. !! www.clutchprep.com K + K + K + K + CELL BIOLOGY - CLUTCH CONCEPT: PRINCIPLES OF TRANSMEMBRANE TRANSPORT Membranes and Gradients Cells must be able to communicate across their membrane barriers to materials

More information

Chapter 10. Thermodynamics of Transport. Thermodynamics of Transport, con t. BCH 4053 Summer 2001 Chapter 10 Lecture Notes. Slide 1.

Chapter 10. Thermodynamics of Transport. Thermodynamics of Transport, con t. BCH 4053 Summer 2001 Chapter 10 Lecture Notes. Slide 1. BCH 4053 Summer 2001 Chapter 10 Lecture Notes 1 Chapter 10 Membrane Transport 2 3 Thermodynamics of Transport Free Energy change is given by difference in electrochemical potential and the quantity transported

More information

Chem Lecture 9 Pumps and Channels Part 1

Chem Lecture 9 Pumps and Channels Part 1 Chem 45 - Lecture 9 Pumps and Channels Part 1 Question of the Day: What two factors about a molecule influence the change in its free energy as it moves across a membrane? Membrane proteins function as

More information

Molecular Similarity of MDR Inhibitors

Molecular Similarity of MDR Inhibitors Int. J. Mol. Sci. 2004, 5, 37-47 International Journal of Molecular Sciences ISS 1422-0067 2004 by MDPI www.mdpi.org/ijms/ Molecular Similarity of MDR Inhibitors Mire Zloh 1* and Simon Gibbons 2 1 University

More information

Energy Transformation, Cellular Energy & Enzymes (Outline)

Energy Transformation, Cellular Energy & Enzymes (Outline) Energy Transformation, Cellular Energy & Enzymes (Outline) Energy conversions and recycling of matter in the ecosystem. Forms of energy: potential and kinetic energy The two laws of thermodynamic and definitions

More information

ACTIVE TRANSPORT AND GLUCOSE TRANSPORT. (Chapter 14 and 15, pp and pp )

ACTIVE TRANSPORT AND GLUCOSE TRANSPORT. (Chapter 14 and 15, pp and pp ) ACTIVE TRANSPORT AND GLUCOSE TRANSPORT (Chapter 14 and 15, pp 140-143 and pp 146-151) Overview Active transport is the movement of molecules across a cell membrane in the direction against their concentration

More information

Title: Nutrient Movement Towards and Into Plant Roots Speaker: Bill Pan. online.wsu.edu

Title: Nutrient Movement Towards and Into Plant Roots Speaker: Bill Pan. online.wsu.edu Title: Nutrient Movement Towards and Into Plant Roots Speaker: Bill Pan online.wsu.edu Unit 1, Lesson 4 Nutrient Movement Towards and Into Plant Roots http://soils.usda.gov/education/resources/k_12/lessons/profile/

More information

Membrane Protein Pumps

Membrane Protein Pumps Membrane Protein Pumps Learning objectives You should be able to understand & discuss: Active transport-na + /K + ATPase ABC transporters Metabolite transport by lactose permease 1. Ion pumps: ATP-driven

More information

Acid-Base Properties

Acid-Base Properties TAMMAR H. Ali Lecture 1 Course No. 326 Faculty of Pharmacy University Of Al-Muthanna 1 Physicochemical Principles of Drug Action Physicochemical Principles of Drug Action To design better drugs: Molecular

More information

Chapt. 12, Movement Across Membranes. Chapt. 12, Movement through lipid bilayer. Chapt. 12, Movement through lipid bilayer

Chapt. 12, Movement Across Membranes. Chapt. 12, Movement through lipid bilayer. Chapt. 12, Movement through lipid bilayer Chapt. 12, Movement Across Membranes Two ways substances can cross membranes Passing through the lipid bilayer Passing through the membrane as a result of specialized proteins 1 Chapt. 12, Movement through

More information

Bio 119 Solute Transport 7/11/2004 SOLUTE TRANSPORT. READING: BOM-10 Sec. 4.7 Membrane Transport Systems p. 71

Bio 119 Solute Transport 7/11/2004 SOLUTE TRANSPORT. READING: BOM-10 Sec. 4.7 Membrane Transport Systems p. 71 SOLUTE TRANSPORT READG: BOM10 Sec. 4.7 Membrane Transport Systems p. 71 DISCUSSION QUESTIONS BOM10: Chapter 4; #6, #8 1. What are the 4 essential features of carrier mediated transport? 2. What does it

More information

9/8/2010. Chapter 4. Structures Internal to the Cell Wall. The Plasma Membrane. Functional Anatomy of Prokaryotic and Eukaryotic Cells

9/8/2010. Chapter 4. Structures Internal to the Cell Wall. The Plasma Membrane. Functional Anatomy of Prokaryotic and Eukaryotic Cells Chapter 4 Functional Anatomy of Prokaryotic and Eukaryotic Cells Johana Meléndez Part II slides 39-87 Lectures prepared by Christine L. Case Structures Internal to the Cell Wall Learning Objectives 4-8

More information

Quantitative Structure-Activity Relationships : QSAR

Quantitative Structure-Activity Relationships : QSAR Quantitative Structure-Activity Relationships : QSAR !" () * 56 &% ' 78 +, -. () * // // 0% 12 // // 34 12 #$ % ADME/Tox Absorption Distribution Metabolism Excretion Toxicity ADME/Tox Absorption Distribution

More information

Energy Transformation and Metabolism (Outline)

Energy Transformation and Metabolism (Outline) Energy Transformation and Metabolism (Outline) - Definitions & Laws of Thermodynamics - Overview of energy flow ecosystem - Biochemical processes: Anabolic/endergonic & Catabolic/exergonic - Chemical reactions

More information

Energy and Cells. Appendix 1. The two primary energy transformations in plants are photosynthesis and respiration.

Energy and Cells. Appendix 1. The two primary energy transformations in plants are photosynthesis and respiration. Energy and Cells Appendix 1 Energy transformations play a key role in all physical and chemical processes that occur in plants. Energy by itself is insufficient to drive plant growth and development. Enzymes

More information

MRP4 and platelets Demokritos C Tsoukatos

MRP4 and platelets Demokritos C Tsoukatos MRP4 and platelets Demokritos C Tsoukatos Laboratory of Biochemistry Department of Chemistry University of Ioannina MRP 4 Multidrug resistance protein 4 (MRP4) is a member of the MRP/ABCC subfamily of

More information

Organisms: We will need to have some examples in mind for our spherical cows.

Organisms: We will need to have some examples in mind for our spherical cows. Lecture 4: Structure and Composition (Sept. 15) 4.1 Reading Assignment for Lectures 3-4: Phillips, Kondev, Theriot (PKT), Chapter 2 Problem Set 1 (due Sept. 24) now posted on the website. Cellular materials:

More information

BACTERIAL PHYSIOLOGY SMALL GROUP. Monday, August 25, :00pm. Faculty: Adam Driks, Ph.D. Alan Wolfe, Ph.D.

BACTERIAL PHYSIOLOGY SMALL GROUP. Monday, August 25, :00pm. Faculty: Adam Driks, Ph.D. Alan Wolfe, Ph.D. BACTERIAL PHYSIOLOGY SMALL GROUP Monday, August 25, 2014 1:00pm Faculty: Adam Driks, Ph.D. Alan Wolfe, Ph.D. Learning Goal To understand how bacterial physiology applies to the diagnosis and treatment

More information

Toxicokinetics: Absorption, Distribution, and Excretion. Michael A. Trush, PhD Johns Hopkins University

Toxicokinetics: Absorption, Distribution, and Excretion. Michael A. Trush, PhD Johns Hopkins University This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike License. Your use of this material constitutes acceptance of that license and the conditions of use of materials on this

More information

Proportion of Arabidopsis genes in different functions. 5% of genome consists of transporters (>1000 genes)

Proportion of Arabidopsis genes in different functions. 5% of genome consists of transporters (>1000 genes) Membranes are crucial to the life of the cell 1. PM define boundary of cell, and maintains difference between cytosol and external environment. Inside, organelles are distinct from one another. 2. Membrane

More information

Anatoly B. Kolomeisky Department of Chemistry Center for Theoretical Biological Physics How to Understand Molecular Transport through Channels: The

Anatoly B. Kolomeisky Department of Chemistry Center for Theoretical Biological Physics How to Understand Molecular Transport through Channels: The Anatoly B. Kolomeisy Department of Chemistry Center for Theoretical Biological Physics How to Understand Molecular Transport through Channels: The Role of Interactions Transport Through Channels Oil pumping

More information

Richik N. Ghosh, Linnette Grove, and Oleg Lapets ASSAY and Drug Development Technologies 2004, 2:

Richik N. Ghosh, Linnette Grove, and Oleg Lapets ASSAY and Drug Development Technologies 2004, 2: 1 3/1/2005 A Quantitative Cell-Based High-Content Screening Assay for the Epidermal Growth Factor Receptor-Specific Activation of Mitogen-Activated Protein Kinase Richik N. Ghosh, Linnette Grove, and Oleg

More information

Novel antibiotics from symbiotic peptides

Novel antibiotics from symbiotic peptides HU-NO Research conference and Knowledge exchange 15.02.2018 Novel antibiotics from symbiotic peptides Eva Kondorosi Biological Research Centre Hungarian Academy of Sciences Medicago truncatula-sinorhizobium

More information

COMPUTER AIDED DRUG DESIGN (CADD) AND DEVELOPMENT METHODS

COMPUTER AIDED DRUG DESIGN (CADD) AND DEVELOPMENT METHODS COMPUTER AIDED DRUG DESIGN (CADD) AND DEVELOPMENT METHODS DRUG DEVELOPMENT Drug development is a challenging path Today, the causes of many diseases (rheumatoid arthritis, cancer, mental diseases, etc.)

More information

Importance of Protein sorting. A clue from plastid development

Importance of Protein sorting. A clue from plastid development Importance of Protein sorting Cell organization depend on sorting proteins to their right destination. Cell functions depend on sorting proteins to their right destination. Examples: A. Energy production

More information

Chapter 8: An Introduction to Metabolism. 1. Energy & Chemical Reactions 2. ATP 3. Enzymes & Metabolic Pathways

Chapter 8: An Introduction to Metabolism. 1. Energy & Chemical Reactions 2. ATP 3. Enzymes & Metabolic Pathways Chapter 8: An Introduction to Metabolism 1. Energy & Chemical Reactions 2. ATP 3. Enzymes & Metabolic Pathways 1. Energy & Chemical Reactions 2 Basic Forms of Energy Kinetic Energy (KE) energy in motion

More information

From Friday s material

From Friday s material 5.111 Lecture 35 35.1 Kinetics Topic: Catalysis Chapter 13 (Section 13.14-13.15) From Friday s material Le Chatelier's Principle - when a stress is applied to a system in equilibrium, the equilibrium tends

More information

Objective 5. Name alkanes chains and rings parent and branches.

Objective 5. Name alkanes chains and rings parent and branches. Objective 5 Name alkanes chains and rings parent and branches. Organic Functional Groups Are Small Groups of Atoms With Specific Bonding and Specific Physical and Chemical Properties What Do These Functional

More information

Involvement of efflux pumps in the resistance to peptidoglycan synthesis

Involvement of efflux pumps in the resistance to peptidoglycan synthesis AAC Accepts, published online ahead of print on January 0 Antimicrob. Agents Chemother. doi:0./aac.0- Copyright 0, American Society for Microbiology. All Rights Reserved. Involvement of efflux pumps in

More information

Delivery. Delivery Processes. Delivery Processes: Distribution. Ultimate Toxicant

Delivery. Delivery Processes. Delivery Processes: Distribution. Ultimate Toxicant Delivery Ultimate Toxicant The chemical species that reacts with the endogenous target. Toxicity depends on the concentration (dose) of the ultimate toxicant at the target site Delivery Processes Absorption

More information

The Discovery of Cells

The Discovery of Cells The Discovery of Cells Microscope observations! General Cell & Organelle Discovery 1600s Observations made by scientists using more powerful microscopes in the 1800s led to the formation of the cell theory.

More information

Use of fluorescent probes to monitor the efflux transporters P- Glycoprotein and MRP1 in BeWo cells.**

Use of fluorescent probes to monitor the efflux transporters P- Glycoprotein and MRP1 in BeWo cells.** ]. Natn.Sci.Foundation Sri Lanka 2007 35(1): 19-27 RESEARCH ARTICLE Use of fluorescent probes to monitor the efflux transporters P- Glycoprotein and MRP1 in BeWo cells.** DJVedra Karunaratne 1 * and Kenneth

More information

CELL STRUCTURE & FUNCTION

CELL STRUCTURE & FUNCTION CELL STRUCTURE & FUNCTION CELL TYPES Living cells can be classified into 2 different types on the basis of their internal structure: 4. Prokaryotic Cells 5. Eukaryotic Cells 1. Prokaryotic Cells Are the

More information

Chapter 7-3 Cells and Their Environment

Chapter 7-3 Cells and Their Environment Chapter 7-3 Cells and Their Environment 7-3 Passive Transport Passive transport-the movement of substances across the cell membrane without using NRG Concentration Gradient-difference in concentration

More information

The role of P-glycoprotein in the absorption ACCEPTED. of novel antimalarial drugs. Andrew Crowe 1* Kenneth F. Ilett 2. Harin A.

The role of P-glycoprotein in the absorption ACCEPTED. of novel antimalarial drugs. Andrew Crowe 1* Kenneth F. Ilett 2. Harin A. AAC Accepts, published online ahead of print on 17 August 2006 Antimicrob. Agents Chemother. doi:10.1128/aac.00708-06 Copyright 2006, American Society for Microbiology and/or the Listed Authors/Institutions.

More information

Eric Hajjar, Amit Kumar, Enrico Spiga, Francesca Collu, Atilio Vargiu, Paolo Ruggerone and Matteo Ceccarelli

Eric Hajjar, Amit Kumar, Enrico Spiga, Francesca Collu, Atilio Vargiu, Paolo Ruggerone and Matteo Ceccarelli University of Cagliari, Dept of Physics CNR-SLACS: Sardinian LAboratory for Computational Materials Science Eric Hajjar, Amit Kumar, Enrico Spiga, Francesca Collu, Atilio Vargiu, Paolo Ruggerone and Matteo

More information

Chapter 7. Cell Structure & Function

Chapter 7. Cell Structure & Function Chapter 7 Cell Structure & Function Scientists & Discoveries Early 1600 s (Holland): 1st microscope was constructed Anton van Leeuwenhoek (1600 s) used single lens as a microscope to study and very carefully

More information

Membranes 2: Transportation

Membranes 2: Transportation Membranes 2: Transportation Steven E. Massey, Ph.D. Associate Professor Bioinformatics Department of Biology University of Puerto Rico Río Piedras Office & Lab: NCN#343B Tel: 787-764-0000 ext. 7798 E-mail:

More information

Chapter 6. Ground Rules Of Metabolism

Chapter 6. Ground Rules Of Metabolism Chapter 6 Ground Rules Of Metabolism Alcohol Dehydrogenase An enzyme Breaks down ethanol and other toxic alcohols Allows humans to drink Metabolism Is the totality of an organism s chemical reactions Arises

More information

Tetracycline Rationale for the EUCAST clinical breakpoints, version th November 2009

Tetracycline Rationale for the EUCAST clinical breakpoints, version th November 2009 Tetracycline Rationale for the EUCAST clinical breakpoints, version 1.0 20 th November 2009 Introduction The natural tetracyclines, including tetracycline, chlortetracycline, oxytetracycline and demethylchlortetracycline

More information

Big Idea 2: Biological systems utilize free energy and molecular building blocks to grow, to reproduce and to maintain dynamic homeostasis.

Big Idea 2: Biological systems utilize free energy and molecular building blocks to grow, to reproduce and to maintain dynamic homeostasis. Big Idea 2: Biological systems utilize free energy and molecular building blocks to grow, to reproduce and to maintain dynamic homeostasis. Enduring understanding 2.B: Growth, reproduction and dynamic

More information

Advanced Higher Biology. Unit 1- Cells and Proteins 2c) Membrane Proteins

Advanced Higher Biology. Unit 1- Cells and Proteins 2c) Membrane Proteins Advanced Higher Biology Unit 1- Cells and Proteins 2c) Membrane Proteins Membrane Structure Phospholipid bilayer Transmembrane protein Integral protein Movement of Molecules Across Membranes Phospholipid

More information

Dr. Ketki Assistant Professor Department of Biochemistry Heritage IMS, Varanasi

Dr. Ketki Assistant Professor Department of Biochemistry Heritage IMS, Varanasi TRANSPORT MECHANISMS Dr. Ketki Assistant Professor Department of Biochemistry Heritage IMS, Varanasi Membrane selectivity allows adjustments of cell composition and function If plasma membrane is relatively

More information

The Genetic Epidemiology of Antibiotic Resistance

The Genetic Epidemiology of Antibiotic Resistance The Genetic Epidemiology of Antibiotic Resistance Professor Neil Woodford Antimicrobial Resistance & Healthcare Associated Infections (AMRHAI) Reference Unit Crown copyright The forensics of AMR Resistance

More information

Diffusion and Cell Membranes - I

Diffusion and Cell Membranes - I Diffusion and Cell Membranes - I Objectives 1. Define the following terms: solute, solvent, concentration gradient, osmotic pressure, and selectively permeable. 2. Define the following processes and identify

More information

Chapter 10 Manipulating Molecules and Designing Drugs

Chapter 10 Manipulating Molecules and Designing Drugs Chapter 10 Manipulating Molecules and Designing Drugs Is our society becoming dependent on prescription drugs? ow harmful are illicit drugs? ow are effective drugs designed? erbal remedies: Is natural

More information

Chapter 8 Notes. An Introduction to Metabolism

Chapter 8 Notes. An Introduction to Metabolism Chapter 8 Notes An Introduction to Metabolism Describe how allosteric regulators may inhibit or stimulate the activity of an enzyme. Objectives Distinguish between the following pairs of terms: catabolic

More information

Biochemistry. Biochemistry 9/20/ Bio-Energetics. 4.2) Transport of ions and small molecules across cell membranes

Biochemistry. Biochemistry 9/20/ Bio-Energetics. 4.2) Transport of ions and small molecules across cell membranes 9/20/15 Biochemistry Biochemistry 4. Bio-Energetics 4.2) Transport of ions and small molecules across cell membranes Aquaporin, the water channel, consists of four identical transmembrane polypeptides

More information

e e = expected individuals with observed genotype Unit 1- Intro to AP and Taxonomy

e e = expected individuals with observed genotype Unit 1- Intro to AP and Taxonomy Unit 1- Intro to AP and Taxonomy 1. The Galapagos Islands were extremely important to Darwin and the Theory of Evolution. Darwin discovered many organisms and scientific ideas that were instrumental to

More information

Biochemistry. Biochemistry 7/11/ Bio-Energetics. 4.2) Transport of ions and small molecules across cell membranes

Biochemistry. Biochemistry 7/11/ Bio-Energetics. 4.2) Transport of ions and small molecules across cell membranes Biochemistry Biochemistry 4. Bio-Energetics 4.2) Transport of ions and small molecules across cell membranes Aquaporin, the water channel, consists of four identical transmembrane polypeptides Key Energy

More information

An Application of Reverse Quasi Steady State Approximation

An Application of Reverse Quasi Steady State Approximation IOSR Journal of Mathematics (IOSR-JM) ISSN: 78-578. Volume 4, Issue (Nov. - Dec. ), PP 37-43 An Application of Reverse Quasi Steady State Approximation over SCA Prashant Dwivedi Department of Mathematics,

More information

BIOLOGY 10/11/2014. An Introduction to Metabolism. Outline. Overview: The Energy of Life

BIOLOGY 10/11/2014. An Introduction to Metabolism. Outline. Overview: The Energy of Life 8 An Introduction to Metabolism CAMPBELL BIOLOGY TENTH EDITION Reece Urry Cain Wasserman Minorsky Jackson Outline I. Forms of Energy II. Laws of Thermodynamics III. Energy and metabolism IV. ATP V. Enzymes

More information

BIO.A.1 Basic Biological Principles

BIO.A.1 Basic Biological Principles BIO.A.1 Basic Biological Principles Bio.A.1.1 - Explain the characteristics common to all organisms Bio.A.1.2 Describe relationships between the structure & function at biological levels of organization

More information

Photosynthesis. Chapter 10. Active Lecture Questions for use with Classroom Response Systems Biology, Seventh Edition Neil Campbell and Jane Reece

Photosynthesis. Chapter 10. Active Lecture Questions for use with Classroom Response Systems Biology, Seventh Edition Neil Campbell and Jane Reece Chapter 10 Photosynthesis Active Lecture Questions for use with Classroom Response Systems Biology, Seventh Edition Neil Campbell and Jane Reece Edited by William Wischusen, Louisiana State University

More information

CELL SIGNALLING and MEMBRANE TRANSPORT. Mark Louie D. Lopez Department of Biology College of Science Polytechnic University of the Philippines

CELL SIGNALLING and MEMBRANE TRANSPORT. Mark Louie D. Lopez Department of Biology College of Science Polytechnic University of the Philippines CELL SIGNALLING and MEMBRANE TRANSPORT Mark Louie D. Lopez Department of Biology College of Science Polytechnic University of the Philippines GENERIC SIGNALLING PATHWAY CELL RESPONSE TO SIGNALS CELL RESPONSE

More information

Chapter 14. Enzyme Kinetics

Chapter 14. Enzyme Kinetics Chapter 4. Enzyme inetics Chemical kinetics Elementary reactions A P (Oerall stoichiometry) (ntermediates) Rate equations aa bb zz P Rate k[a] a [B] b [Z] z k: rate constant The order of the reaction (ab

More information

Exam II. Thursday in class Review Session Tuesday

Exam II. Thursday in class Review Session Tuesday Exam II Thursday 10.30.08 in class Review Session Tuesday 10.28.08 Be able to draw a free energy diagram for an enzymatic reaction Know Michaelis-Menten Kinetics Understand the various types of inhibition

More information

EUCAST Expert Rules Version 3.1. Intrinsic Resistance and Exceptional Phenotypes Tables

EUCAST Expert Rules Version 3.1. Intrinsic Resistance and Exceptional Phenotypes Tables EUCAST Expert s Version 3.1 Intrinsic Resistance and Exceptional Phenotypes Tables EUCAST Expert s version 2.0 was published on 29 October 2011(http://www.eucast.org/expert_rules). The expert rules have

More information

An Introduction to Metabolism

An Introduction to Metabolism An Introduction to Metabolism Chapter 8 Objectives Distinguish between the following pairs of terms: catabolic and anabolic pathways; kinetic and potential energy; open and closed systems; exergonic and

More information

Chemical Kinetics. Kinetics is the study of how fast chemical reactions occur. There are 4 important factors which affect rates of reactions:

Chemical Kinetics. Kinetics is the study of how fast chemical reactions occur. There are 4 important factors which affect rates of reactions: Chemical Kinetics Kinetics is the study of how fast chemical reactions occur. There are 4 important factors which affect rates of reactions: reactant concentration temperature action of catalysts surface

More information

Chapter 6: Energy and Metabolism

Chapter 6: Energy and Metabolism Chapter 6: Energy and Metabolism Student: 1. Oxidation and reduction reactions are chemical processes that result in a gain or loss in A) atoms. B) neutrons. C) electrons. D) molecules. E) protons. 2.

More information

Availability of organic compounds in higher plants

Availability of organic compounds in higher plants 1967, No. 3/4 93 Availability of organic compounds in higher plants A. Verloop Introduetion Substances that bring about changes in living organisms are said to be biologically active. This property of

More information

An Introduction to Metabolism

An Introduction to Metabolism An Introduction to Metabolism The living cell is a microscopic factory where life s giant processes can be performed: -sugars to amino acids to proteins and vise versa -reactions to dismantle polymers

More information

Lecture 04, 04 Sept 2003 Chapters 4 and 5. Vertebrate Physiology ECOL 437 University of Arizona Fall instr: Kevin Bonine t.a.

Lecture 04, 04 Sept 2003 Chapters 4 and 5. Vertebrate Physiology ECOL 437 University of Arizona Fall instr: Kevin Bonine t.a. Lecture 04, 04 Sept 2003 Chapters 4 and 5 Vertebrate Physiology ECOL 437 University of Arizona Fall 2003 instr: Kevin Bonine t.a.: Bret Pasch Vertebrate Physiology 437 1. Membranes (CH4) 2. Nervous System

More information

(Na++ K +)-ATPase in artificial lipid vesicles: influence of the concentration of mono- and divalent cations on the pumping rate

(Na++ K +)-ATPase in artificial lipid vesicles: influence of the concentration of mono- and divalent cations on the pumping rate 254 Biochimica et Biophysica Acta 862 (1986) 254-264 Elsevier BBA 72961 (Na++ K +)-ATPase in artificial lipid vesicles: influence of the concentration of mono- and divalent cations on the pumping rate

More information

Chapter 4-2. Transpiration diffusion of water vapor

Chapter 4-2. Transpiration diffusion of water vapor Chapter 4-2 Transpiration diffusion of water vapor Transpiration diffusion of water vapor Diffusion is primary means of any further movement of the water out of the leaf. That is water movement is controlled

More information

An Introduction to Metabolism

An Introduction to Metabolism An Introduction to Metabolism I. All of an organism=s chemical reactions taken together is called metabolism. A. Metabolic pathways begin with a specific molecule, which is then altered in a series of

More information

Microbiology Helmut Pospiech

Microbiology Helmut Pospiech Microbiology 20.03.2018 Helmut Pospiech The control of what gets in Passive transport along a concentration gradient often inefficient Active transport Requires energy consumption and what gets out ABC

More information

2. The study of is the study of behavior (capture, storage, usage) of energy in living systems.

2. The study of is the study of behavior (capture, storage, usage) of energy in living systems. Cell Metabolism 1. Each of the significant properties of a cell, its growth, reproduction, and responsiveness to its environment requires. 2. The study of is the study of behavior (capture, storage, usage)

More information

Development of Pharmacophore Model for Indeno[1,2-b]indoles as Human Protein Kinase CK2 Inhibitors and Database Mining

Development of Pharmacophore Model for Indeno[1,2-b]indoles as Human Protein Kinase CK2 Inhibitors and Database Mining Development of Pharmacophore Model for Indeno[1,2-b]indoles as Human Protein Kinase CK2 Inhibitors and Database Mining Samer Haidar 1, Zouhair Bouaziz 2, Christelle Marminon 2, Tiomo Laitinen 3, Anti Poso

More information

13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins

13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins 13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins Molecular sorting: specific budding, vesicular transport, fusion 1. Why is this important? A. Form and

More information

UNIT 1: WELLNESS & HOMEOSTASIS. Biology notes 1 Mr.Yeung

UNIT 1: WELLNESS & HOMEOSTASIS. Biology notes 1 Mr.Yeung UNIT 1: WELLNESS & HOMEOSTASIS Biology notes 1 Mr.Yeung WHAT IS UNIT 1 ABOUT? Wellness & Homeostasis 0. Wellness (Reading labels/homeostasis/ serving size) 1. Cell Biology (Ch.3) Cell organelles Cell types

More information

Host-Pathogen Interaction. PN Sharma Department of Plant Pathology CSK HPKV, Palampur

Host-Pathogen Interaction. PN Sharma Department of Plant Pathology CSK HPKV, Palampur Host-Pathogen Interaction PN Sharma Department of Plant Pathology CSK HPKV, Palampur-176062 PATHOGEN DEFENCE IN PLANTS A BIOLOGICAL AND MOLECULAR VIEW Two types of plant resistance response to potential

More information

BASIC BIOLOGICAL PRINCIPLES

BASIC BIOLOGICAL PRINCIPLES BASIC BIOLOGICAL PRINCIPLES A1 A1. Basic Biological Principles 1. Describe the characteristics of life shared by all prokaryotic and eukaryotic organisms 2. Compare cellular structures and their function

More information

Transporters and Membrane Motors Nov 15, 2007

Transporters and Membrane Motors Nov 15, 2007 BtuB OM vitamin B12 transporter F O F 1 ATP synthase Human multiple drug resistance transporter P-glycoprotein Transporters and Membrane Motors Nov 15, 2007 Transport and membrane motors Concentrations

More information

This article was published in an Elsevier journal. The attached copy is furnished to the author for non-commercial research and education use, including for instruction at the author s institution, sharing

More information

Improving Drug Design for Resistances in Gram-Negative Bacteria.

Improving Drug Design for Resistances in Gram-Negative Bacteria. Improving Drug Design for Resistances in Gram-Negative Bacteria. Ellis Benjamin, Earl Benjamin, Louise Sowers, Christopher Saito, Matt Cornell, Anthony Perryman, Briaira Geiger, Kara Nitti, Avery Wright,

More information

EVPP 110 Lecture Exam #1 Study Questions Fall 2003 Dr. Largen

EVPP 110 Lecture Exam #1 Study Questions Fall 2003 Dr. Largen EVPP 110 Lecture Exam #1 Study Questions Fall 2003 Dr. Largen These study questions are meant to focus your study of the material for the first exam. The absence here of a topic or point covered in lecture

More information

Introduction to medicinal chemisry

Introduction to medicinal chemisry 2017 1 st edition Introduction to medicinal chemisry Med Chem I Mohammed Nooraldeen (PhD) كيمياء دوائية )1 ) محمد نورالدين محمود Introduction to medicinal chemistry Medicinal Chemistry Biology Medicine

More information

Chapter 12: Intracellular sorting

Chapter 12: Intracellular sorting Chapter 12: Intracellular sorting Principles of intracellular sorting Principles of intracellular sorting Cells have many distinct compartments (What are they? What do they do?) Specific mechanisms are

More information

Na Li, PhD. Application of a Fluorescent Substrate / Inside-Out Transporter Vesicle Assay for Identifying Inhibitors of MRP Transport

Na Li, PhD. Application of a Fluorescent Substrate / Inside-Out Transporter Vesicle Assay for Identifying Inhibitors of MRP Transport Application of a Fluorescent Substrate / Inside-Out Transporter Vesicle Assay for Identifying Inhibitors of MRP Transport Na Li, PhD BD Biosciences October 20, 2010 BD Gentest Transporter Seminar Series

More information

The Role of Transport Mechanisms in Mycobacterium Tuberculosis Drug Resistance and Tolerance

The Role of Transport Mechanisms in Mycobacterium Tuberculosis Drug Resistance and Tolerance Pharmaceuticals 2012, 5, 1210-1235; doi:10.3390/ph5111210 OPEN ACCESS pharmaceuticals ISSN 1424-8247 www.mdpi.com/journal/pharmaceuticals Review The Role of Transport Mechanisms in Mycobacterium Tuberculosis

More information

Chapter 5. Directions and Rates of Biochemical Processes

Chapter 5. Directions and Rates of Biochemical Processes Chapter 5 Directions and Rates of Biochemical Processes Key Questions What factors determine which way a reaction will go? What factors determine the rate of a chemical reaction? How do enzymes work? How

More information

Class Work 31. Describe the function of the Golgi apparatus? 32. How do proteins travel from the E.R. to the Golgi apparatus? 33. After proteins are m

Class Work 31. Describe the function of the Golgi apparatus? 32. How do proteins travel from the E.R. to the Golgi apparatus? 33. After proteins are m Eukaryotes Class Work 1. What does the word eukaryote mean? 2. What is the one major difference between eukaryotes and prokaryotes? 3. List the different kingdoms of the eukaryote domain in the order in

More information

Transmembrane Domains (TMDs) of ABC transporters

Transmembrane Domains (TMDs) of ABC transporters Transmembrane Domains (TMDs) of ABC transporters Most ABC transporters contain heterodimeric TMDs (e.g. HisMQ, MalFG) TMDs show only limited sequence homology (high diversity) High degree of conservation

More information

Under the Radar Screen: How Bugs Trick Our Immune Defenses

Under the Radar Screen: How Bugs Trick Our Immune Defenses Under the Radar Screen: How Bugs Trick Our Immune Defenses Session 2: Phagocytosis Marie-Eve Paquet and Gijsbert Grotenbreg Whitehead Institute for Biomedical Research Salmonella Gram negative bacteria

More information

Lab 3 Molecular Level of Organization

Lab 3 Molecular Level of Organization Lab 3 Molecular Level of Organization Laboratory Objectives List and describe common biomolecules. Identify the monomers and polymers of lipids, carbohydrates, and proteins. Describe the formation of polar

More information

2. Cellular and Molecular Biology

2. Cellular and Molecular Biology 2. Cellular and Molecular Biology 2.1 Cell Structure 2.2 Transport Across Cell Membranes 2.3 Cellular Metabolism 2.4 DNA Replication 2.5 Cell Division 2.6 Biosynthesis 2.1 Cell Structure What is a cell?

More information