Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Size: px
Start display at page:

Download "Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"

Transcription

1 Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

2 What is Mass Spectrometry? Gravity F= G m M/r 2 r M m Newton Newton s second law F = m a Mass-Energy equivalence E = m c 2 1 ev = ~10-9 amu Einstein

3 A Mass Spectrometer MagLab - Single Sector Mass Spectrometer Tutorial MagLab - Dual Sector Mass Spectrometer Tutorial

4 Ion Cyclotron Motion B v m m v + - qv x B qv x B r r Marshall and Grosshans, Anal. Chem. 1991, 63, 215A.

5 Centripetal Force m v 2 r = q v B Magnetic Force m v r = q B m ω = q B kinetic energy distance slit width ω = 2πf = Ion Cyclotron Resonance q B m 100 m/z 3000 corresponds to 35 khz f 1 MHz at 7 tesla

6 Ernest O. Lawrence 1939 Nobel Prize in Physics Donald Cooksey Cyclotron Accelerator

7 FT-ICR Theory - Ion Trapping X Z T T Magnetic Field (B) Y E Axial Position

8 FT-ICR Trap Geometry B Z Y E D T D T E T X T D E E D D D T,E T,E T E D T T E D E T E,D,T

9 Excitation fast (~1 ms) scan Detection all m/z simultaneously B 0 R C Marshall et. al., Mass Spectrom. Rev. 1998, 17, 1.

10 Differential Amplifier Image Charge 0 Bovine Ubiquitin FT-ICR Tutorial FT Time (ms) m q = B f _ E f Frequency (khz) m/z

11 Resolving Power (RP) = f Δf m = Δm Magnitude-mode lineshape and Hanning apodization ~2 observation period (s) At 7 Tesla, RP is greater than 100,000 at m/z 500 for a 1 s observation Δf 50% Frequency (Hz)

12 Peak Capacity = (m/z) max - (m/z) min Δm 50% Δm 50% (m/z) min m/z (m/z) max

13 Advantages of High Magnetic Field Mass Resolving Power Acquisition Speed 14.5 T 21 T Mass Accuracy Dynamic Range Kinetic Energy* Peak Coalescence 21 T 9.4 T 7 T 12 T 7 T 12 T 9.4 T 14.5 T 0 B (tesla) 25 0 B (tesla) 25 Marshall and Guan, Rapid Commun. Mass Spectrom. 1996, 10,

14 Low Resolving Power High Resolving Power m Δm = 2500 m Δm = 350, m/z

15

16 RVMRGMR vs. RSHRGHR (MW 904 Da) Monoisotopic Mass (S 2 H 8 vs. N 4 O) ± Da m Δm = 3,300,000 m(e - ) = Da m (Da) Smallest resolved mass difference between two molecules!

17 m/z Middle East Crude Oil, (+) APPI at 14.5 T 3.6 mda 1.1 mda 2.3 mda 3.6 mda, C 1 N 1 vs. 13 C mda, C 7 vs. S 2 H 7 13 C mda, SH 3 13 C 1 vs. C 4 49,797 peaks >6σ m/δm 50% = 800,000 (m/z 400) 3.4 mda, C 3 vs. SH mda, 13 C vs. CH 3.4 mda

18 Petroleum = Immense Complexity 105,817 peaks Molecular mass

19 Centripetal Force m v 2 r = q v B Magnetic Force m v r = q B m ω = q B kinetic energy distance slit width ω = 2πf = Ion Cyclotron Resonance q B m 100 m/z 3000 corresponds to 35 khz f 1 MHz at 7 tesla

20 E Field Contribution B Z Y E D T D T E T X T D E E D D D T,E T,E T E D T T E D E T E,D,T

21 FT-ICR Mass Calibration: E & B Centripetal Force Magnetic Force Electric Force m v 2 r = qvb qer m ω 2 r = qbωr qer m ω 2 = qbω qe m q = B ω E ω 2 Ledford et. al., Anal. Chem. 1984, 56,

22 FT-ICR Mass Calibration 7 (Th Hz 2 x ) mω 2 q = Bω E m f 2 q 2 1 rms error = 251 ppb m/q = n = Frequency (Hz)

23 1400 Superconducting Magnet (B field) Stability Magnetic Field Drift (ppb) ppb/hour Time (hours)

24 Frequency Shift (Hz) Electric Field Stability 30 ppm shift in E leads to 1 ppb mass shift! 7 T, m/z 500 ~8 Hz/V Trap Potential (V)

25 What is Molecular Mass? Mass: M = Σm e n e, m e mass of an element n e number of atoms of this element in the molecule Isotope Mass Abundance Chemical mass 1 H % H (D) % 12 C 12.0(0) % C % 14 N % N % 16 O % O % 18 O % 31 P % S % S % 34 S % 36 S %

26 Want a 5 lb weight on the platform: 1 lb 2 lb 5 lb Want a 10 lb weight on the platform: # of possibilities depends on what?

27 Now increase the # of blocks to the # of elements and their masses to atomic mass units. The number of possibilities drastically increases as the mass of the molecule (or weight on the scale ) increases and as the number of weights (or atoms) increases Now: H He Li and so on

28 But now everything doesn t have a integer mass: 1 lb H = lb 5 lb He = Li = So we have a mass defect imparted by every atom except carbon 12, since it is the base of the scale at For example: Methane One 12 C and four H s = (4) x = not , have a mass defect This is why you can assign elemental compositions!

29 (Dalton) 0.02 Atomic H 2 H 13 C 14N 15N Mass Defects C 16 O P 32 S 34S

30 Low resolution High resolution 1 m/z

31 This is the way nature works! Low Resolution MS High Resolution MS m Δm = 2500 m Δm = 350, m/z

32 How accurate do you have to measure the mass? 10 C c H h N n S s O o Mass Space (1 mda Bins) Mass

33 C c H h N n S s O o Mass Space 10 (1 mda Bins) Mass

34 C c H h N n S s O o Mass Space 7 (0.5 mda Bins) Mass

35 ~1 possibility per bin! C c H h N n S s O o Mass Space 4 (0.1 mda Bins) Mass

36 C / H mda 13 C 2 / C 2 H mda European Crude Oil (+) ESI FT-ICR MS N 13 C / C 2 H mda O / CH mda C 3 / SH mda N / 13 CH 8.2 mda m/z ,000

37 Compositional Analysis of Heavy Conventional Crude Oil by FT-ICR Mass Spectrometry * m/z m/δm 50% 1. Carbon Number 2. Heteroatom Composition 3. Aromaticity H N DBE = C McLafferty & Turecek Int. Mass Spectra, 1993 [Z = -2(DBE) + n + 2] m/z [C 50 H 72 S 1 + H] + DBE Relative Abundance (% total) ppb S 1 Class Carbon Number

38 Advanced Data Processing enables high throughput analysis Petro-Org Software Platform

39 Petroleum: The Structural Controversy 2 Proposed Structural Motifs Island Archipelago N CH 3 N + H Loss of DBE with Carbon Energy & Fuels, 14 (1), 2000, 6-10

40 40 Distinction Between Structures 30 DBE 20 I 10 0 A Carbon Number

41 Petroleum: The Structural Continuum m/z

42 DAO 4 Ring Fraction (+) APPI FT-ICR MS at 9.4 Tesla SWIFT Isolation at m/z m/z

43 DAO 4 Ring Fraction Single Nominal Mass Isolation Quad Iso + SWIFT for m/z 632 S 1 S 2 HC S 3 S 1 S 2 S 3 S 2 HC S 1

44 40 IRMPD 100 ms HC Class 40 IRMPD 500 ms HC Class Double Bond Equivalents S 1 Class S 1 Class Carbon Number

45 DBE 26 DBE 23 DBE 20 DBE 17 DBE 14 DBE 10 DBE Carbon Number

46 Thank You! Ryan P. Rodgers Ion Cyclotron Resonance Program

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. MAGLAB Summer School Ryan P. Rodgers

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. MAGLAB Summer School Ryan P. Rodgers Fourier Transform Ion Cyclotron Resonance Mass Spectrometry MAGLAB Summer School 2015 Ryan P. Rodgers Electrospray Ionization Source Drying Gas Capillary Evaporation Chamber High Voltage Supply Charged

More information

Application Note FTMS-56 Reproducibility of Crude Oil Characterization by Flow Injection APPI-FT-ICR Mass Spectrometry

Application Note FTMS-56 Reproducibility of Crude Oil Characterization by Flow Injection APPI-FT-ICR Mass Spectrometry Application Note FTMS-56 Reproducibility of Crude Oil Characterization by Flow Injection APPI-FT-ICR Mass Spectrometry Introduction The oil industry requires detailed information on the composition of

More information

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS)

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) The first steps along the way to FT- ICR-MS date back to the 1930s, when Ernest Lawrence, at the University of California - Berkeley,

More information

Characterization of petroleum samples via thermal analysis coupled to APCI FTMS

Characterization of petroleum samples via thermal analysis coupled to APCI FTMS Characterization of petroleum samples via thermal analysis coupled to APCI FTMS Abstract Thermal analysis, by means of a thermo balance (TG), was coupled to an atmospheric pressure chemical ionization

More information

Mass Analyzers. mass measurement accuracy/reproducibility. % of ions allowed through the analyzer. Highest m/z that can be analyzed

Mass Analyzers. mass measurement accuracy/reproducibility. % of ions allowed through the analyzer. Highest m/z that can be analyzed Mass Analyzers Double Focusing Magnetic Sector Quadrupole Mass Filter Quadrupole Ion Trap Linear Time-of-Flight (TOF) Reflectron TOF Fourier Transform Ion Cyclotron Resonance (FT-ICR-MS) Mass Analyzers

More information

Atomic masses. Atomic masses of elements. Atomic masses of isotopes. Nominal and exact atomic masses. Example: CO, N 2 ja C 2 H 4

Atomic masses. Atomic masses of elements. Atomic masses of isotopes. Nominal and exact atomic masses. Example: CO, N 2 ja C 2 H 4 High-Resolution Mass spectrometry (HR-MS, HRAM-MS) (FT mass spectrometry) MS that enables identifying elemental compositions (empirical formulas) from accurate m/z data 9.05.2017 1 Atomic masses (atomic

More information

Lecture 8: Mass Spectrometry

Lecture 8: Mass Spectrometry intensity Lecture 8: Mass Spectrometry Relative abundance m/z 1 Ethylbenzene CH 2 CH 3 + m/z = 106 CH 2 + m/z = 91 C 8 H 10 MW = 106 CH + m/z = 77 + 2 2 What information can be obtained from a MS spectrum?

More information

Types of Analyzers: Quadrupole: mass filter -part1

Types of Analyzers: Quadrupole: mass filter -part1 16 Types of Analyzers: Sector or double focusing: magnetic and electric Time-of-flight (TOF) Quadrupole (mass filter) Linear ion trap Quadrupole Ion Trap (3D trap) FTICR fourier transform ion cyclotron

More information

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Data Acquisition

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Data Acquisition Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Data Acquisition Peter B. O Connor Critical Literature: Qi, Y.;; O'Connor, P. B., Data processing in Fourier transform ion cyclotron resonance

More information

Lecture 8: Mass Spectrometry

Lecture 8: Mass Spectrometry intensity Lecture 8: Mass Spectrometry Relative abundance m/z 1 Ethylbenzene experiment CH 2 CH 3 + m/z = 106 CH 2 + m/z = 91 C 8 H 10 MW = 106 CH + m/z = 77 + 2 2 What information can we get from MS spectrum?

More information

Chemistry Instrumental Analysis Lecture 35. Chem 4631

Chemistry Instrumental Analysis Lecture 35. Chem 4631 Chemistry 4631 Instrumental Analysis Lecture 35 Principle components: Inlet Ion source Mass analyzer Ion transducer Pumps Signal processor Mass analyzers Quadrupole Time of Flight Double Focusing Ion

More information

Counting individual sulfur atoms in a protein by ultrahighresolution. Fourier transform ion cyclotron resonance mass

Counting individual sulfur atoms in a protein by ultrahighresolution. Fourier transform ion cyclotron resonance mass Proc. Natl. Acad. Sci. USA Vol. 95, pp. 11532 11537, September 1998 Chemistry Counting individual sulfur atoms in a protein by ultrahighresolution Fourier transform ion cyclotron resonance mass spectrometry:

More information

Mass Spectrometry. What is Mass Spectrometry?

Mass Spectrometry. What is Mass Spectrometry? Mass Spectrometry What is Mass Spectrometry? Mass Spectrometry (MS): The generation of gaseous ions from a sample, separation of these ions by mass-to-charge ratio, and measurement of relative abundance

More information

MASS ANALYSER. Mass analysers - separate the ions according to their mass-to-charge ratio. sample. Vacuum pumps

MASS ANALYSER. Mass analysers - separate the ions according to their mass-to-charge ratio. sample. Vacuum pumps ION ANALYZERS MASS ANALYSER sample Vacuum pumps Mass analysers - separate the ions according to their mass-to-charge ratio MASS ANALYSER Separate the ions according to their mass-to-charge ratio in space

More information

This is the total charge on an ion divided by the elementary charge (e).

This is the total charge on an ion divided by the elementary charge (e). 12.2 Fundamentals and general terms Accelerator mass spectrometry An ultra-sensitive technique using tandem accelerators employed mainly for the study of long-lived radioisotopes, and stable isotopes at

More information

Choosing the metabolomics platform

Choosing the metabolomics platform GBS 748 Choosing the metabolomics platform Stephen Barnes, PhD 4 7117; sbarnes@uab.edu So, I have my samples what s next? You ve collected your samples and you may have extracted them Protein precipitation

More information

Introduction to GC/MS

Introduction to GC/MS Why Mass Spectrometry? Introduction to GC/MS A powerful analytical technique used to: 1.Identify unknown compounds 2. Quantify known materials down to trace levels 3. Elucidate the structure of molecules

More information

LC-MS Based Metabolomics

LC-MS Based Metabolomics LC-MS Based Metabolomics Analysing the METABOLOME 1. Metabolite Extraction 2. Metabolite detection (with or without separation) 3. Data analysis Metabolite Detection GC-MS: Naturally volatile or made volatile

More information

Identification of acidic species extracted from heavy crude oil by fourier transform ion cyclotron resonance mass spectrometry

Identification of acidic species extracted from heavy crude oil by fourier transform ion cyclotron resonance mass spectrometry Korean J. Chem. Eng., 31(6), 1082-1087 (2014) DOI: 10.1007/s11814-014-0002-x INVITED REVIEW PAPER INVITED REVIEW PAPER pissn: 0256-1115 eissn: 1975-7220 Identification of acidic species extracted from

More information

FOURIER TRANSFORM MASS SPECTROMETRY

FOURIER TRANSFORM MASS SPECTROMETRY FOURIER TRANSFORM MASS SPECTROMETRY FT-ICR Theory Ion Cyclotron Motion Inward directed Lorentz force causes ions to move in circular orbits about the magnetic field axis Alan G. Marshall, Christopher L.

More information

Mass Analyzers. Ion Trap, FTICR, Orbitrap. CU- Boulder CHEM 5181: Mass Spectrometry & Chromatography. Prof. Jose-Luis Jimenez

Mass Analyzers. Ion Trap, FTICR, Orbitrap. CU- Boulder CHEM 5181: Mass Spectrometry & Chromatography. Prof. Jose-Luis Jimenez Mass Analyzers Ion Trap, FTICR, Orbitrap CU- Boulder CHEM 5181: Mass Spectrometry & Chromatography Prof. Jose-Luis Jimenez Last Update: Oct. 014 Some slides from Dr. Joel Kimmel (007) MS Interpretation

More information

Mass Spectrometry and Proteomics - Lecture 2 - Matthias Trost Newcastle University

Mass Spectrometry and Proteomics - Lecture 2 - Matthias Trost Newcastle University Mass Spectrometry and Proteomics - Lecture 2 - Matthias Trost Newcastle University matthias.trost@ncl.ac.uk Previously: Resolution and other basics MALDI Electrospray 40 Lecture 2 Mass analysers Detectors

More information

Secondary ion mass spectrometry (SIMS)

Secondary ion mass spectrometry (SIMS) Secondary ion mass spectrometry (SIMS) Lasse Vines 1 Secondary ion mass spectrometry O Zn 10000 O 2 Counts/sec 1000 100 Li Na K Cr ZnO 10 ZnO 2 1 0 20 40 60 80 100 Mass (AMU) 10 21 10 20 Si 07 Ge 0.3 Atomic

More information

2. Separate the ions based on their mass to charge (m/e) ratio. 3. Measure the relative abundance of the ions that are produced

2. Separate the ions based on their mass to charge (m/e) ratio. 3. Measure the relative abundance of the ions that are produced I. Mass spectrometry: capable of providing both quantitative and qualitative information about samples as small as 100 pg (!) and with molar masses in the 10 4-10 5 kdalton range A. The mass spectrometer

More information

Mass spectrometry gas phase transfer and instrumentation

Mass spectrometry gas phase transfer and instrumentation Objectives of the Lecture spectrometry gas phase transfer and instrumentation Matt Renfrow January 15, 2014 1. Make ions 2. Separate/Analyze 3. Detect ions 4. What is mass resolution and mass accuracy?

More information

Mass spectrometry of proteins, peptides and other analytes: principles and principal methods. Matt Renfrow January 11, 2008

Mass spectrometry of proteins, peptides and other analytes: principles and principal methods. Matt Renfrow January 11, 2008 Mass spectrometry of proteins, peptides and other analytes: principles and principal methods Matt Renfrow January 11, 2008 Objectives of the Lecture 1. Make ions 2. Separate/Analyze/Detect ions 3. What

More information

Secondary Ion Mass Spectrometry (SIMS) Thomas Sky

Secondary Ion Mass Spectrometry (SIMS) Thomas Sky 1 Secondary Ion Mass Spectrometry (SIMS) Thomas Sky Depth (µm) 2 Characterization of solar cells 0,0 1E16 1E17 1E18 1E19 1E20 0,2 0,4 0,6 0,8 1,0 1,2 P Concentration (cm -3 ) Characterization Optimization

More information

1) Introduction. 2) Types of Mass Analyzers - Overview. Assigned Reading: Nier mass spectrometry paper Extra Reading:

1) Introduction. 2) Types of Mass Analyzers - Overview. Assigned Reading: Nier mass spectrometry paper Extra Reading: Assigned Reading: Nier mass spectrometry paper Extra Reading: 1) Introduction a) We are now on to the heart of the mass spectrometer. How do you separate ions of different mass, so that you can detect/quantify

More information

Week 5: Fourier Tranform-based Mass Analyzers: FT-ICR and Orbitrap

Week 5: Fourier Tranform-based Mass Analyzers: FT-ICR and Orbitrap Week 5: Fourier Tranform-based Mass Analyzers: FT-ICR and Orbitrap 1 Last Time Mass Analyzers; CAD and TOF mass analyzers: 2 Fourier Transforms A transform is when you change your analytical space without

More information

Proton Transfer Reactions and Ion-Molecule Reactions of Ionized XCH 2 CH 2 Y (X and Y = OH or NH 2 )

Proton Transfer Reactions and Ion-Molecule Reactions of Ionized XCH 2 CH 2 Y (X and Y = OH or NH 2 ) Ion-Molecule Reactions of Ionized XCH 2 CH 2 Y Bull. Korean Chem. Soc. 2006, Vol. 27, No. 4 539 Proton Transfer Reactions and Ion-Molecule Reactions of Ionized XCH 2 CH 2 Y (X and Y = OH or NH 2 ) Sung-Seen

More information

Chapter 5. Mass spectrometry

Chapter 5. Mass spectrometry ionization and fragmentation Chapter 5. Mass spectrometry which fragmentations? mass and frequency, m/z and count rate Reading: Pavia Chapters 3 and 4 Don t need 3.3 B-D, 3.4 B-D Use the text to clarify

More information

Auxiliary Techniques Soft ionization methods

Auxiliary Techniques Soft ionization methods Auxiliary Techniques The limitations of the structural information in the normal mass spectrum can be partly offset by special mass-spectral techniques. Although a complete description of these is beyond

More information

Welcome to Organic Chemistry II

Welcome to Organic Chemistry II Welcome to Organic Chemistry II Erika Bryant, Ph.D. erika.bryant@hccs.edu Class Syllabus 3 CHAPTER 12: STRUCTURE DETERMINATION 4 What is this solution Soda Tea Coffee??? 5 What is this solution Soda Tea

More information

Harris: Quantitative Chemical Analysis, Eight Edition

Harris: Quantitative Chemical Analysis, Eight Edition Harris: Quantitative Chemical Analysis, Eight Edition CHAPTER 21: MASS SPECTROMETRY CHAPTER 21: Opener 21.0 Mass Spectrometry Mass Spectrometry provides information about 1) The elemental composition of

More information

Mass spectrometry prosess

Mass spectrometry prosess 1 Mass spectrometry prosess Ionization = ion source Ion acceleration and separation = Analyzer Data collection = Detector 2 Data analysis? 1 3 Analytical information CONCEPTS : nominal mass, atomic weight,

More information

Chemistry 311: Topic 3 - Mass Spectrometry

Chemistry 311: Topic 3 - Mass Spectrometry Mass Spectroscopy: A technique used to measure the mass-to-charge ratio of molecules and atoms. Often characteristic ions produced by an induced unimolecular dissociation of a molecule are measured. These

More information

Skoog/Holler/Crouch Chapter 19 Principles of Instrumental Analysis, 6th ed. CHAPTER 19

Skoog/Holler/Crouch Chapter 19 Principles of Instrumental Analysis, 6th ed. CHAPTER 19 Skoog/Holler/Crouch Chapter 19 Principles of Instrumental Analysis, 6th ed. Instructor s Manual CHAPTER 19 19-1. In a continuous wave NMR experiment, the intensity of the absorption signal is monitored

More information

MS Interpretation I. Identification of the Molecular Ion

MS Interpretation I. Identification of the Molecular Ion MS Interpretation I Identification of the Molecular Ion Molecular Ion: EI Requirements for the Molecular Ion Must be the highest m/z peak in the spectrum Highest Isotope Cluster Must be an odd-electron

More information

CEE 772 Lecture #27 12/10/2014. CEE 772: Instrumental Methods in Environmental Analysis

CEE 772 Lecture #27 12/10/2014. CEE 772: Instrumental Methods in Environmental Analysis Updated: 10 December 2014 Print version CEE 772: Instrumental Methods in Environmental Analysis Lecture #21 Mass Spectrometry: Mass Filters & Spectrometers (Skoog, Chapt. 20, pp.511 524) (Harris, Chapt.

More information

CEE 772: Instrumental Methods in Environmental Analysis

CEE 772: Instrumental Methods in Environmental Analysis Updated: 10 December 2014 Print version CEE 772: Instrumental Methods in Environmental Analysis Lecture #21 Mass Spectrometry: Mass Filters & Spectrometers (Skoog, Chapt. 20, pp.511-524) (Harris, Chapt.

More information

Florida State University Libraries

Florida State University Libraries Florida State University Libraries Electronic Theses, Treatises and Dissertations The Graduate School 2007 Petroleum Analysis by Atmospheric Pressure Photoionization Fourier Transform Ion Cyclotron Resonance

More information

Propose a structure for an alcohol, C4H10O, that has the following

Propose a structure for an alcohol, C4H10O, that has the following Propose a structure for an alcohol, C4H10O, that has the following 13CNMR spectral data: Broadband _ decoupled 13CNMR: 19.0, 31.7, 69.5 б DEPT _90: 31.7 б DEPT _ 135: positive peak at 19.0 & 31.7 б, negative

More information

CHM 424 EXAM 4 CRIB - COVER PAGE FALL

CHM 424 EXAM 4 CRIB - COVER PAGE FALL CHM 44 EXAM 4 CRIB - COVER PAGE FALL 006 There are seven numbered pages with five questions. Answer the questions on the exam. Exams done in ink are eligible for regrade, those done in pencil will not

More information

VIII. QUADRUPOLE ION TRAPS: AN ION TRAPPING INST. A. BASIC DESIGN (REF: JMS, 1997, 32, 351)

VIII. QUADRUPOLE ION TRAPS: AN ION TRAPPING INST. A. BASIC DESIGN (REF: JMS, 1997, 32, 351) VIII. QUADRUPOLE ION TRAPS: AN ION TRAPPING INST. A. BASIC DESIGN (REF: JMS, 1997, 32, 351) The trap consists of a ring electrode (internal radius is r 0 ) and two end caps separated by z 0.; all internal

More information

Thermo Fisher Scientific, San Jose, CA; 2 Kelleher Lab, Northwestern University, Evanston, IL; 3

Thermo Fisher Scientific, San Jose, CA; 2 Kelleher Lab, Northwestern University, Evanston, IL; 3 Second-Generation Electron Transfer Dissociation (ETD) on the Thermo Scientific Orbitrap Fusion Mass Spectrometer with Improved Functionality, Increased Speed, Christopher Mullen, 1 Lee Earley, 1 Jean-Jacques

More information

Cyclotron Resonances in a Non-Neutral Multispecies Ion Plasma

Cyclotron Resonances in a Non-Neutral Multispecies Ion Plasma Cyclotron Resonances in a NonNeutral Multispecies Ion Plasma M. Affolter, F. Anderegg, C. F. Driscoll, and D. H. E. Dubin Department of Physics, University of California at San Diego, La Jolla, California

More information

Chapter 5. Complexation of Tholins by 18-crown-6:

Chapter 5. Complexation of Tholins by 18-crown-6: 5-1 Chapter 5. Complexation of Tholins by 18-crown-6: Identification of Primary Amines 5.1. Introduction Electrospray ionization (ESI) is an excellent technique for the ionization of complex mixtures,

More information

LCT. Detailed Crude Oil Analysis: Processes for the future

LCT. Detailed Crude Oil Analysis: Processes for the future LCT Processes for the future Detailed Crude Oil Analysis: GCGC, Field Ionization Mass Spectrometry and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Join Forces Prof. Kevin Van Geem Kevin

More information

Instrumental Analysis. Mass Spectrometry. Lecturer:! Somsak Sirichai

Instrumental Analysis. Mass Spectrometry. Lecturer:! Somsak Sirichai 303351 Instrumental Analysis Mass Spectrometry Lecturer:! Somsak Sirichai Mass Spectrometry What is Mass spectrometry (MS)? An analytic method that employs ionization and mass analysis of compounds in

More information

Mass Spectrometry (MS)

Mass Spectrometry (MS) Kevin Burgess, February 20, 2017 1 Mass Spectrometry (MS) from chapter(s) in the recommended text A. Introduction Kevin Burgess, February 20, 2017 2 B. Components f Mass Spectrometers mass-to-charge. molecular

More information

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Fundamental Concepts

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Fundamental Concepts Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Fundamental Concepts Peter B. O Connor Critical Literature: Qi, Y.;; O'Connor, P. B., Data processing in Fourier transform ion cyclotron resonance

More information

MS Goals and Applications. MS Goals and Applications

MS Goals and Applications. MS Goals and Applications MS Goals and Applications 1 Several variations on a theme, three common steps Form gas-phase ions choice of ionization method depends on sample identity and information required Separate ions on basis

More information

High accuracy mass measurements by mass spectrometry

High accuracy mass measurements by mass spectrometry Isotopic Compositions and Accurate Masses of Single Isotopic Peaks Alan L. Rockwood ARUP Institute for Clinical and Experimental Pathology, Salt Lake City, Utah, USA Jordan R. Van Orman and David V. Dearden

More information

Mass Analyzers. Principles of the three most common types magnetic sector, quadrupole and time of flight - will be discussed herein.

Mass Analyzers. Principles of the three most common types magnetic sector, quadrupole and time of flight - will be discussed herein. Mass Analyzers After the production of ions in ion sources, the next critical step in mass spectrometry is to separate these gas phase ions according to their mass-to-charge ratio (m/z). Ions are extracted

More information

The Validation of Exact Mass Measurements for Small Molecules Using FT-ICRMS for Improved Confidence in the Selection of Elemental Formulas

The Validation of Exact Mass Measurements for Small Molecules Using FT-ICRMS for Improved Confidence in the Selection of Elemental Formulas The Validation of Exact Mass Measurements for Small Molecules Using FT-ICRMS for Improved Confidence in the Selection of Elemental Formulas Julie M. Herniman and G. John Langley University of Southampton,

More information

Fundamentals of Mass Spectrometry. Fundamentals of Mass Spectrometry. Learning Objective. Proteomics

Fundamentals of Mass Spectrometry. Fundamentals of Mass Spectrometry. Learning Objective. Proteomics Mass spectrometry (MS) is the technique for protein identification and analysis by production of charged molecular species in vacuum, and their separation by magnetic and electric fields based on mass

More information

The rapidly ballooning interest in characterization of petroleum

The rapidly ballooning interest in characterization of petroleum Petroleomics: Chemistry of the underworld Alan G. Marshall* and Ryan P. Rodgers* *National High Magnetic Field Laboratory, Florida State University, 1800 East Paul Dirac Drive, Tallahassee, FL 32310-4005;

More information

Mass Spectrometry: Introduction

Mass Spectrometry: Introduction Mass Spectrometry: Introduction Chem 8361/4361: Interpretation of Organic Spectra 2009 Andrew Harned & Regents of the University of Minnesota Varying More Mass Spectrometry NOT part of electromagnetic

More information

Mass spectrometry: forming ions, to identifying proteins and their modifications Stephen Barnes, PhD

Mass spectrometry: forming ions, to identifying proteins and their modifications Stephen Barnes, PhD Mass spectrometry: forming ions, to identifying proteins and their modifications Stephen Barnes, PhD 4-7117 sbarnes@uab.edu Introduction to mass spectrometry Class 1 - Biology and mass spectrometry Why

More information

Exceptionally high mass resolving power, high

Exceptionally high mass resolving power, high Structural Validation of Saccharomicins by High Resolution and High Mass Accuracy Fourier Transform-Ion Cyclotron Resonance- Mass Spectrometry and Infrared Multiphoton Dissociation Tandem Mass Spectrometry

More information

Interazioni di ioni con elettroni (ECD, ETD) e fotoni (Ion spectroscopy) Gianluca Giorgi. via Aldo Moro Siena

Interazioni di ioni con elettroni (ECD, ETD) e fotoni (Ion spectroscopy) Gianluca Giorgi. via Aldo Moro Siena Interazioni di ioni con elettroni (ECD, ETD) e fotoni (Ion spectroscopy) Gianluca Giorgi Università degli Studi di Siena Dipartimento di Biotecnologie, Chimica e Farmacia via Aldo Moro 53100 Siena e-mail:

More information

Fourier transform ion cyclotron resonance (FT-

Fourier transform ion cyclotron resonance (FT- Atmospheric Pressure Ionization Permanent Magnet Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Andrey N. Vilkov, a Chaminda M. Gamage, a Alexander S. Misharin, a Vladimir M. Doroshenko, a

More information

Overview of AMS Mass Spectrometry Analysis: Low vs. High Mass Resolution

Overview of AMS Mass Spectrometry Analysis: Low vs. High Mass Resolution Overview of AMS Mass Spectrometry Analysis: Low vs. High Mass Resolution Qi Zhang Department of Environmental Toxicology University of California at Davis Aerodyne/Nanjing University Chinese AMS/ACSM Clinic

More information

for the Novice Mass Spectrometry (^>, John Greaves and John Roboz yc**' CRC Press J Taylor & Francis Group Boca Raton London New York

for the Novice Mass Spectrometry (^>, John Greaves and John Roboz yc**' CRC Press J Taylor & Francis Group Boca Raton London New York Mass Spectrometry for the Novice John Greaves and John Roboz (^>, yc**' CRC Press J Taylor & Francis Group Boca Raton London New York CRC Press is an imprint of the Taylor & Francis Croup, an informa business

More information

Ion Mobility-Mass Spectrometry: A Tool for Characterizing the Petroleome

Ion Mobility-Mass Spectrometry: A Tool for Characterizing the Petroleome Page 1 of 10 Print Up to 5 copies You print copies on the honor system; we trust that you will only make up to 5. Need more than 5 copies? See other print options. April 1, 2009 Ion Mobility-Mass Spectrometry:

More information

LECTURE-11. Hybrid MS Configurations HANDOUT. As discussed in our previous lecture, mass spectrometry is by far the most versatile

LECTURE-11. Hybrid MS Configurations HANDOUT. As discussed in our previous lecture, mass spectrometry is by far the most versatile LECTURE-11 Hybrid MS Configurations HANDOUT PREAMBLE As discussed in our previous lecture, mass spectrometry is by far the most versatile technique used in proteomics. We had also discussed some of the

More information

Center for Sustainable Environmental Technologies, Iowa State University

Center for Sustainable Environmental Technologies, Iowa State University NMR Characterization of Biochars By Catherine Brewer Center for Sustainable Environmental Technologies, Iowa State University Introduction Nuclear magnetic resonance spectroscopy (NMR) uses a very strong

More information

Analytical Technologies and Compound Identification. Daniel L. Norwood, MSPH, PhD SCĪO Analytical Consulting, LLC.

Analytical Technologies and Compound Identification. Daniel L. Norwood, MSPH, PhD SCĪO Analytical Consulting, LLC. Analytical Technologies and Compound Identification Daniel L. Norwood, MSPH, PhD SCĪ Analytical Consulting, LLC. Extractables/Leachables Characterization (USP) Characterization is the discovery,

More information

Lecture 14 Organic Chemistry 1

Lecture 14 Organic Chemistry 1 CHEM 232 Organic Chemistry I at Chicago Lecture 14 Organic Chemistry 1 Professor Duncan Wardrop February 25, 2010 1 CHEM 232 Organic Chemistry I at Chicago Mass Spectrometry Sections: 13.24-13.25 2 Spectroscopy

More information

Speed Improvement of an FTICR Mass Spectra Analysis Program by Simple Modifications

Speed Improvement of an FTICR Mass Spectra Analysis Program by Simple Modifications Speed Improvement of an FTICR Mass Spectra Analysis Program Bull. Korean Chem. Soc. 2009, Vol. 30, No. 9 2061 Speed Improvement of an FTICR Mass Spectra Analysis Program by Simple Modifications Sang Hyun

More information

Tendenze nell innovazione della strumentazione in spettrometria di massa:

Tendenze nell innovazione della strumentazione in spettrometria di massa: Tendenze nell innovazione della strumentazione in spettrometria di massa: Trappola lineare, orbitrap, ion mobility e nuova strumentazione René Magritte La Condition Humaine 1 Ion Trap Mass Spectrometry

More information

Mass Spectrometry (MS)

Mass Spectrometry (MS) Mass Spectrometry (MS) MW Molecular formula Structural information GC-MS LC-MS To Do s Read Chapter 7, and complete the endof-chapter problem 7-4. Answer Keys are available in CHB204H MS Principles Molecule

More information

What did you learn in the last lecture?

What did you learn in the last lecture? What did you learn in the last lecture? What did you learn in the last lecture? Beta stability, the LD Mass Formula, and Accelerators Simplest form of LD Mass Formula TBE = C 1 A C A /3 C 3 Z /A 1/3 C

More information

Electrospray ionization mass spectrometry (ESI-

Electrospray ionization mass spectrometry (ESI- Automated Charge State Determination of Complex Isotope-Resolved Mass Spectra by Peak-Target Fourier Transform Li Chen a and Yee Leng Yap b a Bioinformatics Institute, 30 Biopolis Street, Singapore b Davos

More information

L.7. Mass Spectrum Interpretation

L.7. Mass Spectrum Interpretation L.7. Mass Spectrum Interpretation Fragmentation reactions Spectrum interpretation Confirmation of ion structural assignment Biomolecule dissociation Fragmentation reactions 1. Fragmentation reactions of

More information

Mass Spectrometry. Introduction EI-MS and CI-MS Molecular mass & formulas Principles of fragmentation Fragmentation patterns Isotopic effects

Mass Spectrometry. Introduction EI-MS and CI-MS Molecular mass & formulas Principles of fragmentation Fragmentation patterns Isotopic effects Mass Spectrometry Introduction EI-MS and CI-MS Molecular mass & formulas Principles of fragmentation Fragmentation patterns Isotopic effects 1 Introduction to MS Mass spectrometry is the method of analysis

More information

(Refer Slide Time 00:09) (Refer Slide Time 00:13)

(Refer Slide Time 00:09) (Refer Slide Time 00:13) (Refer Slide Time 00:09) Mass Spectrometry Based Proteomics Professor Sanjeeva Srivastava Department of Biosciences and Bioengineering Indian Institute of Technology, Bombay Mod 02 Lecture Number 09 (Refer

More information

CHEM 241 UNIT 5: PART A DETERMINATION OF ORGANIC STRUCTURES BY SPECTROSCOPIC METHODS [MASS SPECTROMETRY]

CHEM 241 UNIT 5: PART A DETERMINATION OF ORGANIC STRUCTURES BY SPECTROSCOPIC METHODS [MASS SPECTROMETRY] CHEM 241 UNIT 5: PART A DETERMINATION OF ORGANIC STRUCTURES BY SPECTROSCOPIC METHODS [MASS SPECTROMETRY] 1 Introduction Outline Mass spectrometry (MS) 2 INTRODUCTION The analysis of the outcome of a reaction

More information

Mass Spectrometry - Background

Mass Spectrometry - Background Mass Spectrometry - Background In mass spectrometry, a substance is bombarded with an electron beam having sufficient energy to fragment the molecule. The positive fragments which are produced (cations

More information

PC 235: Mass Spectrometry and Proteomics

PC 235: Mass Spectrometry and Proteomics PC 235: Mass Spectrometry and Proteomics Lecture 1 May 11 th, 2009 Shenheng Guan NIH NCRR Mass Spectrometry Facility, UCSF sguan@cgl.ucsf.edu Course Outline Lectures: 10hrs: 10am-12 in Genentech Hall Room

More information

MS Goals and Applications. MS Goals and Applications

MS Goals and Applications. MS Goals and Applications MS Goals and Applications 3 Several variations on a theme, three common steps Form gas-phase ions choice of ionization method depends on sample identity and information required Separate ions on basis

More information

Mass spectrometry: forming ions, to identifying proteins and their modifications Stephen Barnes, PhD

Mass spectrometry: forming ions, to identifying proteins and their modifications Stephen Barnes, PhD Mass spectrometry: forming ions, to identifying proteins and their modifications Stephen Barnes, PhD 4-7117 sbarnes@uab.edu Introduction to mass spectrometry Class 1 - Biology and mass spectrometry Why

More information

FTICR-MS YouTube Video

FTICR-MS YouTube Video Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Fundamental Concepts Peter B. O Connor Critical Literature: Qi, Y.; O'Connor, P. B., Data processing in Fourier transform ion cyclotron resonance

More information

Ion Cyclotron Resonance Program, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida, USA

Ion Cyclotron Resonance Program, National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida, USA FOCUS: NOVEL APPROACHES TO PEPTIDE AND PROTEIN STRUCTURE Evaluation and Optimization of Electron Capture Dissociation Efficiency in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Melinda A.

More information

Fourier Transform Ion Cyclotron Resonance Mass Resolution and Dynamic Range Limits Calculated by Computer Modeling of Ion Cloud Motion

Fourier Transform Ion Cyclotron Resonance Mass Resolution and Dynamic Range Limits Calculated by Computer Modeling of Ion Cloud Motion B American Society for Mass Spectrometry, 2011 J. Am. Soc. Mass Spectrom. (2012) 23:375Y384 DOI: 10.1007/s13361-011-0268-8 RESEARCH ARTICLE Fourier Transform Ion Cyclotron Resonance Mass Resolution and

More information

Thermochemical Sulfate Reduction Simulation Experiments on the Formation and Distribution of Organic Sulfur Compounds in the Tuha Crude Oil

Thermochemical Sulfate Reduction Simulation Experiments on the Formation and Distribution of Organic Sulfur Compounds in the Tuha Crude Oil Thermochemical Sulfate Reduction Simulation Experiments Bull. Korean Chem. Soc. 2014, Vol. 35, No. 7 2057 http://dx.doi.org/10.5012/bkcs.2014.35.7.2057 Thermochemical Sulfate Reduction Simulation Experiments

More information

1. The range of frequencies that a measurement is sensitive to is called the frequency

1. The range of frequencies that a measurement is sensitive to is called the frequency CHEM 3 Name Exam 1 Fall 014 Complete these problems on separate paper and staple it to this sheet when you are finished. Please initial each sheet as well. Clearly mark your answers. YOU MUST SHOW YOUR

More information

GC-APCI IMS of Diesel

GC-APCI IMS of Diesel GC-APCI IM of Diesel Application Note Energy and Chemicals Authors heher Bano Mohsin, David Wong, and F. Robert Ley Agilent Technologies, Inc. Abstract This Application Note describes the use of ion mobility

More information

Magnetic Resonance Spectroscopy EPR and NMR

Magnetic Resonance Spectroscopy EPR and NMR Magnetic Resonance Spectroscopy EPR and NMR A brief review of the relevant bits of quantum mechanics 1. Electrons have spin, - rotation of the charge about its axis generates a magnetic field at each electron.

More information

Mass Spectrometry. A truly interdisciplinary and versatile analytical method

Mass Spectrometry. A truly interdisciplinary and versatile analytical method Mass Spectrometry A truly interdisciplinary and versatile analytical method MS is used for the characterization of molecules ranging from small inorganic and organic molecules to polymers and proteins.

More information

Fri 6 Nov 09. More IR Mass spectroscopy. Hour exam 3 Fri Covers Chaps 9-12 Wednesday: Review

Fri 6 Nov 09. More IR Mass spectroscopy. Hour exam 3 Fri Covers Chaps 9-12 Wednesday: Review Fri 6 Nov 09 our exam 3 Fri 11-13 Covers Chaps 9-12 Wednesday: Review More IR Mass spectroscopy Good web site for IR, Mass, NMR spectra: http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_index.cgi?lang=eng

More information

Chapter 20. Mass Spectroscopy

Chapter 20. Mass Spectroscopy Chapter 20 Mass Spectroscopy Mass Spectrometry (MS) Mass spectrometry is a technique used for measuring the molecular weight and determining the molecular formula of an organic compound. Mass Spectrometry

More information

Mass Spectrometry: underlying concepts and applications. Marek Tulej. From Ultrafast to Ultracold: Modern Topics and Methods in Physical Chemistry

Mass Spectrometry: underlying concepts and applications. Marek Tulej. From Ultrafast to Ultracold: Modern Topics and Methods in Physical Chemistry From Ultrafast to Ultracold: Modern Topics and Methods in Physical Chemistry Mass Spectrometry: underlying concepts and applications Marek Tulej marek.tulej@unibas.ch marek.tulej@space.unibe.ch 1 Organisation

More information

Determination of elemental composition (EC)

Determination of elemental composition (EC) Isotope Pattern Evaluation for the Reduction of Elemental Compositions Assigned to High-Resolution Mass Spectral Data from Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

More information

Atomic Physics with Stored and Cooled Ions

Atomic Physics with Stored and Cooled Ions Lecture #8 Atomic Physics with Stored and Cooled Ions Klaus Blaum Gesellschaft für Schwerionenforschung, GSI, Darmstadt and CERN, Physics Department, Geneva, Switzerland Summer School, Lanzhou, China,

More information

NMRis the most valuable spectroscopic technique for organic chemists because it maps the carbon-hydrogen framework of a molecule.

NMRis the most valuable spectroscopic technique for organic chemists because it maps the carbon-hydrogen framework of a molecule. Chapter 13: Nuclear magnetic resonance spectroscopy NMRis the most valuable spectroscopic technique for organic chemists because it maps the carbon-hydrogen framework of a molecule. 13.2 The nature of

More information

Mini review for final

Mini review for final Mini review for final NB: This does not cover all material! (very) Rough outline Units, Conversions, Powers of 10, Prefixes Errors: Sig Figs, Error propagation Statistics: Normal distribution, t-test,

More information

History of Mass spectroscopy. Mass Spectroscopy. Introduction... Uses of Mass Spec. Where are Mass Spectrometers Used? Mass Spectroscopy Units

History of Mass spectroscopy. Mass Spectroscopy. Introduction... Uses of Mass Spec. Where are Mass Spectrometers Used? Mass Spectroscopy Units History of Mass spectroscopy Mass Spectroscopy CHEM 466 Upali Siriwardane Marilyn Cox Jim Plamer http://www.chemistry.ohiostate.edu/~allen/587%20w04/587%20w0 4%20130-136%20std.pdf http://www.cem.msu.edu/~cem333/week1

More information

FOCUS: INTERDISCIPLINARY BIOLOGICAL MS: RESEARCH ARTICLE

FOCUS: INTERDISCIPLINARY BIOLOGICAL MS: RESEARCH ARTICLE B American Society for Mass Spectrometry, 2011 J. Am. Soc. Mass Spectrom. (2011) 22:1343Y1351 DOI: 10.1007/s13361-011-0141-9 FOCUS: INTERDISCIPLINARY BIOLOGICAL MS: RESEARCH ARTICLE A Novel 9.4 Tesla FTICR

More information

[ instrument specifications ]

[ instrument specifications ] Designed for leading researchers working at the limits of conventional mass spectrometry capabilities who need to further characterize and define their samples the Waters SYNAPT High Definition MS (HDMS

More information