Lab 8. Matched Case Control Studies

Size: px
Start display at page:

Download "Lab 8. Matched Case Control Studies"

Transcription

1 Lab 8 Matched Case Control Studies

2 Control of Confounding Technique for the control of confounding: At the design stage: Matching During the analysis of the results: Post-stratification analysis Advantage of using stratification in design: avoid the inefficiencies resulting from some strata with a gross imbalance of cases and controls. Matching: Method of selecting control subjects to control for potential confounding. Idea: Place constraints on selection of controls to make two groups comparable at least with respect to confounding variables. In matched case-control studies, for each case or a fixed size group of cases, a fixed (or even variable) number of controls are identified who match the cases on a set of characteristics. The distribution of these characteristics will be comparable between cases and controls, so no associations are possible.

3 More on matching If a study conducted as a matched study, it must be analyzed as a matched study. Why match? Balance cases / controls within strata to improve efficiency Eliminate bias due to confounding Occasionally to test a particular pathway Matching on C forces no association between C and D, so C cannot confound. Why not match? Logistically more difficult May reduce available sample size many potential cases may be excluded because no match can be found Eliminates the possibility of assessing the effect of C on risk.

4 More on matching (cont.) Controls can be individually matched or frequency matched. Individual matching: Search for one (or more) controls who have the required matching criteria. Paired or triplet matching is when there is one or two controls individually matched to each case. Frequency matching: select a population of controls such that the overall characteristics of the group match the overall characteristics of the cases. e.g. if 15% of cases are under age 20, 15% of the controls are also. Avoid over-matching: match only on factors known to be causes of the disease. Obtain power by matching more than one control per case. In general, N of controls should be < 4, because there is no further gain of power above four controls per case.

5 1:1 matched studies - Tabulation Controls can be individually matched or frequency matched. No. of matched pairs Case exposure + - Control exposure + a c a+c - b d b+d a+b Remember: Exposure OR = Disease OR: OR=ω={P(E+ case)p(e- control)}/{p(e- case)p(e+ control)} estimated by: ) ω = b/c Standard error on the log scale: s.e. [ln( ) ω )]=(1/b+1/c) 1/2 c+d N

6 1:1 matched studies - Test Control exposure No. of matched pairs + - Case exposure + a b a+b - c d c+d a+c b+d N McNemar s test of OR=1 compares b and c : 2 ( b c) 2 b+ c ~χ 1

7 1:1 matched studies - Parameters odds(disease)=ω P θ i P(disease)=ω P θ i / (1+ω P θ i ) ω P : baseline odds of pair P Specific of each pair because of matching. θ i : covariate effects for subject i (a function of covariate values for subject i). Disease odds for subject 1: ω P θ 1 = ω 1 Disease odds for subject 2: ω P θ 2 = ω 2 ln[odds(disease)]=ln[ω P ] + ln[θ i ] = Corner P + ln(or) One parameter per pair, i.e. number of parameters =~ N/2. Profile likelihood breaks down. Solution: Conditional likelihood. Probability of data, conditional on design, i.e. on 1 case and 1 control per set. Distribution of covariates for case and control contains the information.

8 1:1 matched studies Conditional likelihood Conditional on one case and one control in each set, L = P(subj. 1 case 1 case, 1 control) = Kω 1 /(Κω 1 +Κω 2 ) = Κω Ρ θ 1 / (Κω Ρ θ 1 +Κω Ρ θ 2 ) = θ 1 / (θ 1 +θ 2 ) where, K = [1/(1+ω 1 )]*[1/(1+ω 2 )] = 1/[(1+ω 1 )(1+ω 2 )] Log-likelihood contribution from one matched pair is: ln[θ case /(θ case + θ control )] Independent of the corner parameters!

9 1:M matching Odds for disease on one matched set: subject 1: ω P θ 1 = ω 1 subject 2: ω P θ 2 = ω 2 subject m+1: ω P θ m+1 = ω m+1 Probability that subject 1 is the case and the others are the controls: [ω 1 /(1+ω 1 )]*[1/(1+ω 2 )]* *[1 /(1+ω m+1 )] Probability to have 1 case and m controls: Σ i {ω i /[(1+ω 1 )*(1+ω 2 )* *(1+ω m+1 )]} = Σ i ω i /[(1+ω 1 )*(1+ω 2 )* *(1+ω m+1 )] Conditional probability that subject 1 is the case and subjects 2, 3,, m+1 are the controls, given one case and m controls: ω 1 /(ω 1 + ω ω m+1 ) = θ 1 /(θ 1 + θ θ m+1 )

10 1:M matching (cont.) Log-likelihood contribution from one matched set: l= ln θ case i cases & controls Log-likelihood for the total study: l = matched sets ln θ i θ case i cases & controls θi The conditional log-likelihood for a 1:M matched CC study looks like a Cox-log-likelihood: l = failure times ln θ case i Risk set θi The matched CC likelihood is of this form if at each death time, the case dies and only controls of the same set are at risk.

11 Analysis of conditional likelihood by ordinary logistic regression Likelihood contribution from one matched pair is: θ case /(θ case + θ control )=(θ case /θ control )/(1+ θ case /θ control )=ω/(1+ω) This is the likelihood contribution from one binary observation with odds of success ω = θ case /θ control Linear model for ln(θ) ln(θ case ) = Corner+Set+A case leads to (for one matched pair) ln(ω) = ln(θ case ) - ln(θ control ) = (Corner+Set+A case ) - (Corner+Set+A control ) = A case A control Corresponds to logistic regression without intercept. One observation per matched set. Covariates are: covariate-value for case covariate-value for control Logistic regression without intercept. Through the origin.

12 1:1 matched studies by ordinary logistic regression The information is in the covariates: Continuous covariate: Age case Age control. Differences between dummies, value for case minus value for control. Categorical covariate, dummies replaced by variables with values -1, 0 or 1: if case and control belong to the same category all are = 0 if case and control belong to different categories: 1 for the category where the case is. -1 for the category where the control is. 0 for the other categories. ONLY possible for 1:1 matched studies.

11 November 2011 Department of Biostatistics, University of Copengen. 9:15 10:00 Recap of case-control studies. Frequency-matched studies.

11 November 2011 Department of Biostatistics, University of Copengen. 9:15 10:00 Recap of case-control studies. Frequency-matched studies. Matched and nested case-control studies Bendix Carstensen Steno Diabetes Center, Gentofte, Denmark http://staff.pubhealth.ku.dk/~bxc/ Department of Biostatistics, University of Copengen 11 November 2011

More information

Case-control studies

Case-control studies Matched and nested case-control studies Bendix Carstensen Steno Diabetes Center, Gentofte, Denmark b@bxc.dk http://bendixcarstensen.com Department of Biostatistics, University of Copenhagen, 8 November

More information

Calculating Effect-Sizes. David B. Wilson, PhD George Mason University

Calculating Effect-Sizes. David B. Wilson, PhD George Mason University Calculating Effect-Sizes David B. Wilson, PhD George Mason University The Heart and Soul of Meta-analysis: The Effect Size Meta-analysis shifts focus from statistical significance to the direction and

More information

STAT 5500/6500 Conditional Logistic Regression for Matched Pairs

STAT 5500/6500 Conditional Logistic Regression for Matched Pairs STAT 5500/6500 Conditional Logistic Regression for Matched Pairs Motivating Example: The data we will be using comes from a subset of data taken from the Los Angeles Study of the Endometrial Cancer Data

More information

Logistic Regression. Interpretation of linear regression. Other types of outcomes. 0-1 response variable: Wound infection. Usual linear regression

Logistic Regression. Interpretation of linear regression. Other types of outcomes. 0-1 response variable: Wound infection. Usual linear regression Logistic Regression Usual linear regression (repetition) y i = b 0 + b 1 x 1i + b 2 x 2i + e i, e i N(0,σ 2 ) or: y i N(b 0 + b 1 x 1i + b 2 x 2i,σ 2 ) Example (DGA, p. 336): E(PEmax) = 47.355 + 1.024

More information

Correlation and regression

Correlation and regression 1 Correlation and regression Yongjua Laosiritaworn Introductory on Field Epidemiology 6 July 2015, Thailand Data 2 Illustrative data (Doll, 1955) 3 Scatter plot 4 Doll, 1955 5 6 Correlation coefficient,

More information

General Regression Model

General Regression Model Scott S. Emerson, M.D., Ph.D. Department of Biostatistics, University of Washington, Seattle, WA 98195, USA January 5, 2015 Abstract Regression analysis can be viewed as an extension of two sample statistical

More information

STAT 5500/6500 Conditional Logistic Regression for Matched Pairs

STAT 5500/6500 Conditional Logistic Regression for Matched Pairs STAT 5500/6500 Conditional Logistic Regression for Matched Pairs The data for the tutorial came from support.sas.com, The LOGISTIC Procedure: Conditional Logistic Regression for Matched Pairs Data :: SAS/STAT(R)

More information

Lecture 12: Effect modification, and confounding in logistic regression

Lecture 12: Effect modification, and confounding in logistic regression Lecture 12: Effect modification, and confounding in logistic regression Ani Manichaikul amanicha@jhsph.edu 4 May 2007 Today Categorical predictor create dummy variables just like for linear regression

More information

Introduction to Statistical Analysis

Introduction to Statistical Analysis Introduction to Statistical Analysis Changyu Shen Richard A. and Susan F. Smith Center for Outcomes Research in Cardiology Beth Israel Deaconess Medical Center Harvard Medical School Objectives Descriptive

More information

Suppose that we are concerned about the effects of smoking. How could we deal with this?

Suppose that we are concerned about the effects of smoking. How could we deal with this? Suppose that we want to study the relationship between coffee drinking and heart attacks in adult males under 55. In particular, we want to know if there is an association between coffee drinking and heart

More information

Tests for Two Correlated Proportions in a Matched Case- Control Design

Tests for Two Correlated Proportions in a Matched Case- Control Design Chapter 155 Tests for Two Correlated Proportions in a Matched Case- Control Design Introduction A 2-by-M case-control study investigates a risk factor relevant to the development of a disease. A population

More information

26:010:557 / 26:620:557 Social Science Research Methods

26:010:557 / 26:620:557 Social Science Research Methods 26:010:557 / 26:620:557 Social Science Research Methods Dr. Peter R. Gillett Associate Professor Department of Accounting & Information Systems Rutgers Business School Newark & New Brunswick 1 Overview

More information

Describing Contingency tables

Describing Contingency tables Today s topics: Describing Contingency tables 1. Probability structure for contingency tables (distributions, sensitivity/specificity, sampling schemes). 2. Comparing two proportions (relative risk, odds

More information

Marginal versus conditional effects: does it make a difference? Mireille Schnitzer, PhD Université de Montréal

Marginal versus conditional effects: does it make a difference? Mireille Schnitzer, PhD Université de Montréal Marginal versus conditional effects: does it make a difference? Mireille Schnitzer, PhD Université de Montréal Overview In observational and experimental studies, the goal may be to estimate the effect

More information

Lecture 8 Stat D. Gillen

Lecture 8 Stat D. Gillen Statistics 255 - Survival Analysis Presented February 23, 2016 Dan Gillen Department of Statistics University of California, Irvine 8.1 Example of two ways to stratify Suppose a confounder C has 3 levels

More information

2/26/2017. PSY 512: Advanced Statistics for Psychological and Behavioral Research 2

2/26/2017. PSY 512: Advanced Statistics for Psychological and Behavioral Research 2 PSY 512: Advanced Statistics for Psychological and Behavioral Research 2 When and why do we use logistic regression? Binary Multinomial Theory behind logistic regression Assessing the model Assessing predictors

More information

Confounding, mediation and colliding

Confounding, mediation and colliding Confounding, mediation and colliding What types of shared covariates does the sibling comparison design control for? Arvid Sjölander and Johan Zetterqvist Causal effects and confounding A common aim of

More information

Lecture Discussion. Confounding, Non-Collapsibility, Precision, and Power Statistics Statistical Methods II. Presented February 27, 2018

Lecture Discussion. Confounding, Non-Collapsibility, Precision, and Power Statistics Statistical Methods II. Presented February 27, 2018 , Non-, Precision, and Power Statistics 211 - Statistical Methods II Presented February 27, 2018 Dan Gillen Department of Statistics University of California, Irvine Discussion.1 Various definitions of

More information

STAT331. Cox s Proportional Hazards Model

STAT331. Cox s Proportional Hazards Model STAT331 Cox s Proportional Hazards Model In this unit we introduce Cox s proportional hazards (Cox s PH) model, give a heuristic development of the partial likelihood function, and discuss adaptations

More information

Logistic regression analysis. Birthe Lykke Thomsen H. Lundbeck A/S

Logistic regression analysis. Birthe Lykke Thomsen H. Lundbeck A/S Logistic regression analysis Birthe Lykke Thomsen H. Lundbeck A/S 1 Response with only two categories Example Odds ratio and risk ratio Quantitative explanatory variable More than one variable Logistic

More information

Guideline on adjustment for baseline covariates in clinical trials

Guideline on adjustment for baseline covariates in clinical trials 26 February 2015 EMA/CHMP/295050/2013 Committee for Medicinal Products for Human Use (CHMP) Guideline on adjustment for baseline covariates in clinical trials Draft Agreed by Biostatistics Working Party

More information

Generalized logit models for nominal multinomial responses. Local odds ratios

Generalized logit models for nominal multinomial responses. Local odds ratios Generalized logit models for nominal multinomial responses Categorical Data Analysis, Summer 2015 1/17 Local odds ratios Y 1 2 3 4 1 π 11 π 12 π 13 π 14 π 1+ X 2 π 21 π 22 π 23 π 24 π 2+ 3 π 31 π 32 π

More information

ANALYSIS OF CORRELATED DATA SAMPLING FROM CLUSTERS CLUSTER-RANDOMIZED TRIALS

ANALYSIS OF CORRELATED DATA SAMPLING FROM CLUSTERS CLUSTER-RANDOMIZED TRIALS ANALYSIS OF CORRELATED DATA SAMPLING FROM CLUSTERS CLUSTER-RANDOMIZED TRIALS Background Independent observations: Short review of well-known facts Comparison of two groups continuous response Control group:

More information

Stat 642, Lecture notes for 04/12/05 96

Stat 642, Lecture notes for 04/12/05 96 Stat 642, Lecture notes for 04/12/05 96 Hosmer-Lemeshow Statistic The Hosmer-Lemeshow Statistic is another measure of lack of fit. Hosmer and Lemeshow recommend partitioning the observations into 10 equal

More information

Analysis of Categorical Data. Nick Jackson University of Southern California Department of Psychology 10/11/2013

Analysis of Categorical Data. Nick Jackson University of Southern California Department of Psychology 10/11/2013 Analysis of Categorical Data Nick Jackson University of Southern California Department of Psychology 10/11/2013 1 Overview Data Types Contingency Tables Logit Models Binomial Ordinal Nominal 2 Things not

More information

Machine Learning Linear Classification. Prof. Matteo Matteucci

Machine Learning Linear Classification. Prof. Matteo Matteucci Machine Learning Linear Classification Prof. Matteo Matteucci Recall from the first lecture 2 X R p Regression Y R Continuous Output X R p Y {Ω 0, Ω 1,, Ω K } Classification Discrete Output X R p Y (X)

More information

Part IV Statistics in Epidemiology

Part IV Statistics in Epidemiology Part IV Statistics in Epidemiology There are many good statistical textbooks on the market, and we refer readers to some of these textbooks when they need statistical techniques to analyze data or to interpret

More information

Ignoring the matching variables in cohort studies - when is it valid, and why?

Ignoring the matching variables in cohort studies - when is it valid, and why? Ignoring the matching variables in cohort studies - when is it valid, and why? Arvid Sjölander Abstract In observational studies of the effect of an exposure on an outcome, the exposure-outcome association

More information

1 Introduction A common problem in categorical data analysis is to determine the effect of explanatory variables V on a binary outcome D of interest.

1 Introduction A common problem in categorical data analysis is to determine the effect of explanatory variables V on a binary outcome D of interest. Conditional and Unconditional Categorical Regression Models with Missing Covariates Glen A. Satten and Raymond J. Carroll Λ December 4, 1999 Abstract We consider methods for analyzing categorical regression

More information

Review. Timothy Hanson. Department of Statistics, University of South Carolina. Stat 770: Categorical Data Analysis

Review. Timothy Hanson. Department of Statistics, University of South Carolina. Stat 770: Categorical Data Analysis Review Timothy Hanson Department of Statistics, University of South Carolina Stat 770: Categorical Data Analysis 1 / 22 Chapter 1: background Nominal, ordinal, interval data. Distributions: Poisson, binomial,

More information

Lecture 2: Poisson and logistic regression

Lecture 2: Poisson and logistic regression Dankmar Böhning Southampton Statistical Sciences Research Institute University of Southampton, UK S 3 RI, 11-12 December 2014 introduction to Poisson regression application to the BELCAP study introduction

More information

Beyond GLM and likelihood

Beyond GLM and likelihood Stat 6620: Applied Linear Models Department of Statistics Western Michigan University Statistics curriculum Core knowledge (modeling and estimation) Math stat 1 (probability, distributions, convergence

More information

Basic Medical Statistics Course

Basic Medical Statistics Course Basic Medical Statistics Course S7 Logistic Regression November 2015 Wilma Heemsbergen w.heemsbergen@nki.nl Logistic Regression The concept of a relationship between the distribution of a dependent variable

More information

Extensions of Cox Model for Non-Proportional Hazards Purpose

Extensions of Cox Model for Non-Proportional Hazards Purpose PhUSE Annual Conference 2013 Paper SP07 Extensions of Cox Model for Non-Proportional Hazards Purpose Author: Jadwiga Borucka PAREXEL, Warsaw, Poland Brussels 13 th - 16 th October 2013 Presentation Plan

More information

Classification & Regression. Multicollinearity Intro to Nominal Data

Classification & Regression. Multicollinearity Intro to Nominal Data Multicollinearity Intro to Nominal Let s Start With A Question y = β 0 + β 1 x 1 +β 2 x 2 y = Anxiety Level x 1 = heart rate x 2 = recorded pulse Since we can all agree heart rate and pulse are related,

More information

Logistic Regression. Continued Psy 524 Ainsworth

Logistic Regression. Continued Psy 524 Ainsworth Logistic Regression Continued Psy 524 Ainsworth Equations Regression Equation Y e = 1 + A+ B X + B X + B X 1 1 2 2 3 3 i A+ B X + B X + B X e 1 1 2 2 3 3 Equations The linear part of the logistic regression

More information

CIMAT Taller de Modelos de Capture y Recaptura Known Fate Survival Analysis

CIMAT Taller de Modelos de Capture y Recaptura Known Fate Survival Analysis CIMAT Taller de Modelos de Capture y Recaptura 2010 Known Fate urvival Analysis B D BALANCE MODEL implest population model N = λ t+ 1 N t Deeper understanding of dynamics can be gained by identifying variation

More information

Formula for the t-test

Formula for the t-test Formula for the t-test: How the t-test Relates to the Distribution of the Data for the Groups Formula for the t-test: Formula for the Standard Error of the Difference Between the Means Formula for the

More information

LOGISTIC REGRESSION Joseph M. Hilbe

LOGISTIC REGRESSION Joseph M. Hilbe LOGISTIC REGRESSION Joseph M. Hilbe Arizona State University Logistic regression is the most common method used to model binary response data. When the response is binary, it typically takes the form of

More information

An ordinal number is used to represent a magnitude, such that we can compare ordinal numbers and order them by the quantity they represent.

An ordinal number is used to represent a magnitude, such that we can compare ordinal numbers and order them by the quantity they represent. Statistical Methods in Business Lecture 6. Binomial Logistic Regression An ordinal number is used to represent a magnitude, such that we can compare ordinal numbers and order them by the quantity they

More information

More Statistics tutorial at Logistic Regression and the new:

More Statistics tutorial at  Logistic Regression and the new: Logistic Regression and the new: Residual Logistic Regression 1 Outline 1. Logistic Regression 2. Confounding Variables 3. Controlling for Confounding Variables 4. Residual Linear Regression 5. Residual

More information

Ph.D. course: Regression models. Introduction. 19 April 2012

Ph.D. course: Regression models. Introduction. 19 April 2012 Ph.D. course: Regression models Introduction PKA & LTS Sect. 1.1, 1.2, 1.4 19 April 2012 www.biostat.ku.dk/~pka/regrmodels12 Per Kragh Andersen 1 Regression models The distribution of one outcome variable

More information

MMWS Software Program Manual

MMWS Software Program Manual MMWS Software Program Manual 1 Software Development The MMWS program is regularly updated. The latest beta version can be downloaded from http://hlmsoft.net/ghong/ MMWS Click here to get MMWS. For a sample

More information

Lecture 5: Poisson and logistic regression

Lecture 5: Poisson and logistic regression Dankmar Böhning Southampton Statistical Sciences Research Institute University of Southampton, UK S 3 RI, 3-5 March 2014 introduction to Poisson regression application to the BELCAP study introduction

More information

Model Selection in GLMs. (should be able to implement frequentist GLM analyses!) Today: standard frequentist methods for model selection

Model Selection in GLMs. (should be able to implement frequentist GLM analyses!) Today: standard frequentist methods for model selection Model Selection in GLMs Last class: estimability/identifiability, analysis of deviance, standard errors & confidence intervals (should be able to implement frequentist GLM analyses!) Today: standard frequentist

More information

1 The problem of survival analysis

1 The problem of survival analysis 1 The problem of survival analysis Survival analysis concerns analyzing the time to the occurrence of an event. For instance, we have a dataset in which the times are 1, 5, 9, 20, and 22. Perhaps those

More information

Ph.D. course: Regression models. Regression models. Explanatory variables. Example 1.1: Body mass index and vitamin D status

Ph.D. course: Regression models. Regression models. Explanatory variables. Example 1.1: Body mass index and vitamin D status Ph.D. course: Regression models Introduction PKA & LTS Sect. 1.1, 1.2, 1.4 25 April 2013 www.biostat.ku.dk/~pka/regrmodels13 Per Kragh Andersen Regression models The distribution of one outcome variable

More information

Survival Analysis Math 434 Fall 2011

Survival Analysis Math 434 Fall 2011 Survival Analysis Math 434 Fall 2011 Part IV: Chap. 8,9.2,9.3,11: Semiparametric Proportional Hazards Regression Jimin Ding Math Dept. www.math.wustl.edu/ jmding/math434/fall09/index.html Basic Model Setup

More information

Introduction To Logistic Regression

Introduction To Logistic Regression Introduction To Lecture 22 April 28, 2005 Applied Regression Analysis Lecture #22-4/28/2005 Slide 1 of 28 Today s Lecture Logistic regression. Today s Lecture Lecture #22-4/28/2005 Slide 2 of 28 Background

More information

Logistic Regression: Regression with a Binary Dependent Variable

Logistic Regression: Regression with a Binary Dependent Variable Logistic Regression: Regression with a Binary Dependent Variable LEARNING OBJECTIVES Upon completing this chapter, you should be able to do the following: State the circumstances under which logistic regression

More information

Categorical Predictor Variables

Categorical Predictor Variables Categorical Predictor Variables We often wish to use categorical (or qualitative) variables as covariates in a regression model. For binary variables (taking on only 2 values, e.g. sex), it is relatively

More information

Simple logistic regression

Simple logistic regression Simple logistic regression Biometry 755 Spring 2009 Simple logistic regression p. 1/47 Model assumptions 1. The observed data are independent realizations of a binary response variable Y that follows a

More information

Faculty of Health Sciences. Regression models. Counts, Poisson regression, Lene Theil Skovgaard. Dept. of Biostatistics

Faculty of Health Sciences. Regression models. Counts, Poisson regression, Lene Theil Skovgaard. Dept. of Biostatistics Faculty of Health Sciences Regression models Counts, Poisson regression, 27-5-2013 Lene Theil Skovgaard Dept. of Biostatistics 1 / 36 Count outcome PKA & LTS, Sect. 7.2 Poisson regression The Binomial

More information

Lecture 23. November 15, Department of Biostatistics Johns Hopkins Bloomberg School of Public Health Johns Hopkins University.

Lecture 23. November 15, Department of Biostatistics Johns Hopkins Bloomberg School of Public Health Johns Hopkins University. This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike License. Your use of this material constitutes acceptance of that license and the conditions of use of materials on this

More information

Additive and multiplicative models for the joint effect of two risk factors

Additive and multiplicative models for the joint effect of two risk factors Biostatistics (2005), 6, 1,pp. 1 9 doi: 10.1093/biostatistics/kxh024 Additive and multiplicative models for the joint effect of two risk factors A. BERRINGTON DE GONZÁLEZ Cancer Research UK Epidemiology

More information

Causal Hazard Ratio Estimation By Instrumental Variables or Principal Stratification. Todd MacKenzie, PhD

Causal Hazard Ratio Estimation By Instrumental Variables or Principal Stratification. Todd MacKenzie, PhD Causal Hazard Ratio Estimation By Instrumental Variables or Principal Stratification Todd MacKenzie, PhD Collaborators A. James O Malley Tor Tosteson Therese Stukel 2 Overview 1. Instrumental variable

More information

Missing Covariate Data in Matched Case-Control Studies

Missing Covariate Data in Matched Case-Control Studies Missing Covariate Data in Matched Case-Control Studies Department of Statistics North Carolina State University Paul Rathouz Dept. of Health Studies U. of Chicago prathouz@health.bsd.uchicago.edu with

More information

Biost 518 Applied Biostatistics II. Purpose of Statistics. First Stage of Scientific Investigation. Further Stages of Scientific Investigation

Biost 518 Applied Biostatistics II. Purpose of Statistics. First Stage of Scientific Investigation. Further Stages of Scientific Investigation Biost 58 Applied Biostatistics II Scott S. Emerson, M.D., Ph.D. Professor of Biostatistics University of Washington Lecture 5: Review Purpose of Statistics Statistics is about science (Science in the broadest

More information

A time stratified to time series data

A time stratified to time series data Case crossover method A time stratified to time series data ISEE workshop 2010 Contents Case crossover? casecross(), a function in R Application to casecross() 1) matching day of the week 2) matching temperature

More information

Turning a research question into a statistical question.

Turning a research question into a statistical question. Turning a research question into a statistical question. IGINAL QUESTION: Concept Concept Concept ABOUT ONE CONCEPT ABOUT RELATIONSHIPS BETWEEN CONCEPTS TYPE OF QUESTION: DESCRIBE what s going on? DECIDE

More information

7.1. Correlation analysis. Regression.

7.1. Correlation analysis. Regression. 7.1 Correlation analysis. Regression. 7.12 7.13 7.13 7.33 7.15 Values from the same group tend to be similar. There is no tendency for values from the same group to be similar. 7.14 Modelling of data:

More information

7/28/15. Review Homework. Overview. Lecture 6: Logistic Regression Analysis

7/28/15. Review Homework. Overview. Lecture 6: Logistic Regression Analysis Lecture 6: Logistic Regression Analysis Christopher S. Hollenbeak, PhD Jane R. Schubart, PhD The Outcomes Research Toolbox Review Homework 2 Overview Logistic regression model conceptually Logistic regression

More information

Stat/F&W Ecol/Hort 572 Review Points Ané, Spring 2010

Stat/F&W Ecol/Hort 572 Review Points Ané, Spring 2010 1 Linear models Y = Xβ + ɛ with ɛ N (0, σ 2 e) or Y N (Xβ, σ 2 e) where the model matrix X contains the information on predictors and β includes all coefficients (intercept, slope(s) etc.). 1. Number of

More information

Statistical Modelling with Stata: Binary Outcomes

Statistical Modelling with Stata: Binary Outcomes Statistical Modelling with Stata: Binary Outcomes Mark Lunt Arthritis Research UK Epidemiology Unit University of Manchester 21/11/2017 Cross-tabulation Exposed Unexposed Total Cases a b a + b Controls

More information

BIAS OF MAXIMUM-LIKELIHOOD ESTIMATES IN LOGISTIC AND COX REGRESSION MODELS: A COMPARATIVE SIMULATION STUDY

BIAS OF MAXIMUM-LIKELIHOOD ESTIMATES IN LOGISTIC AND COX REGRESSION MODELS: A COMPARATIVE SIMULATION STUDY BIAS OF MAXIMUM-LIKELIHOOD ESTIMATES IN LOGISTIC AND COX REGRESSION MODELS: A COMPARATIVE SIMULATION STUDY Ingo Langner 1, Ralf Bender 2, Rebecca Lenz-Tönjes 1, Helmut Küchenhoff 2, Maria Blettner 2 1

More information

Lecture notes to Chapter 11, Regression with binary dependent variables - probit and logit regression

Lecture notes to Chapter 11, Regression with binary dependent variables - probit and logit regression Lecture notes to Chapter 11, Regression with binary dependent variables - probit and logit regression Tore Schweder October 28, 2011 Outline Examples of binary respons variables Probit and logit - examples

More information

Longitudinal Modeling with Logistic Regression

Longitudinal Modeling with Logistic Regression Newsom 1 Longitudinal Modeling with Logistic Regression Longitudinal designs involve repeated measurements of the same individuals over time There are two general classes of analyses that correspond to

More information

Chapter 6. Logistic Regression. 6.1 A linear model for the log odds

Chapter 6. Logistic Regression. 6.1 A linear model for the log odds Chapter 6 Logistic Regression In logistic regression, there is a categorical response variables, often coded 1=Yes and 0=No. Many important phenomena fit this framework. The patient survives the operation,

More information

Lecture 7 Time-dependent Covariates in Cox Regression

Lecture 7 Time-dependent Covariates in Cox Regression Lecture 7 Time-dependent Covariates in Cox Regression So far, we ve been considering the following Cox PH model: λ(t Z) = λ 0 (t) exp(β Z) = λ 0 (t) exp( β j Z j ) where β j is the parameter for the the

More information

Bios 6648: Design & conduct of clinical research

Bios 6648: Design & conduct of clinical research Bios 6648: Design & conduct of clinical research Section 2 - Formulating the scientific and statistical design designs 2.5(b) Binary 2.5(c) Skewed baseline (a) Time-to-event (revisited) (b) Binary (revisited)

More information

Exact McNemar s Test and Matching Confidence Intervals Michael P. Fay April 25,

Exact McNemar s Test and Matching Confidence Intervals Michael P. Fay April 25, Exact McNemar s Test and Matching Confidence Intervals Michael P. Fay April 25, 2016 1 McNemar s Original Test Consider paired binary response data. For example, suppose you have twins randomized to two

More information

MULTINOMIAL LOGISTIC REGRESSION

MULTINOMIAL LOGISTIC REGRESSION MULTINOMIAL LOGISTIC REGRESSION Model graphically: Variable Y is a dependent variable, variables X, Z, W are called regressors. Multinomial logistic regression is a generalization of the binary logistic

More information

Part [1.0] Measures of Classification Accuracy for the Prediction of Survival Times

Part [1.0] Measures of Classification Accuracy for the Prediction of Survival Times Part [1.0] Measures of Classification Accuracy for the Prediction of Survival Times Patrick J. Heagerty PhD Department of Biostatistics University of Washington 1 Biomarkers Review: Cox Regression Model

More information

ECLT 5810 Linear Regression and Logistic Regression for Classification. Prof. Wai Lam

ECLT 5810 Linear Regression and Logistic Regression for Classification. Prof. Wai Lam ECLT 5810 Linear Regression and Logistic Regression for Classification Prof. Wai Lam Linear Regression Models Least Squares Input vectors is an attribute / feature / predictor (independent variable) The

More information

IP WEIGHTING AND MARGINAL STRUCTURAL MODELS (CHAPTER 12) BIOS IPW and MSM

IP WEIGHTING AND MARGINAL STRUCTURAL MODELS (CHAPTER 12) BIOS IPW and MSM IP WEIGHTING AND MARGINAL STRUCTURAL MODELS (CHAPTER 12) BIOS 776 1 12 IPW and MSM IP weighting and marginal structural models ( 12) Outline 12.1 The causal question 12.2 Estimating IP weights via modeling

More information

Multinomial Logistic Regression Models

Multinomial Logistic Regression Models Stat 544, Lecture 19 1 Multinomial Logistic Regression Models Polytomous responses. Logistic regression can be extended to handle responses that are polytomous, i.e. taking r>2 categories. (Note: The word

More information

A tool to demystify regression modelling behaviour

A tool to demystify regression modelling behaviour A tool to demystify regression modelling behaviour Thomas Alexander Gerds 1 / 38 Appetizer Every child knows how regression analysis works. The essentials of regression modelling strategy, such as which

More information

Computational Systems Biology: Biology X

Computational Systems Biology: Biology X Bud Mishra Room 1002, 715 Broadway, Courant Institute, NYU, New York, USA L#7:(Mar-23-2010) Genome Wide Association Studies 1 The law of causality... is a relic of a bygone age, surviving, like the monarchy,

More information

Asymptotic equivalence of paired Hotelling test and conditional logistic regression

Asymptotic equivalence of paired Hotelling test and conditional logistic regression Asymptotic equivalence of paired Hotelling test and conditional logistic regression Félix Balazard 1,2 arxiv:1610.06774v1 [math.st] 21 Oct 2016 Abstract 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS

More information

STA6938-Logistic Regression Model

STA6938-Logistic Regression Model Dr. Ying Zhang STA6938-Logistic Regression Model Topic 2-Multiple Logistic Regression Model Outlines:. Model Fitting 2. Statistical Inference for Multiple Logistic Regression Model 3. Interpretation of

More information

A new strategy for meta-analysis of continuous covariates in observational studies with IPD. Willi Sauerbrei & Patrick Royston

A new strategy for meta-analysis of continuous covariates in observational studies with IPD. Willi Sauerbrei & Patrick Royston A new strategy for meta-analysis of continuous covariates in observational studies with IPD Willi Sauerbrei & Patrick Royston Overview Motivation Continuous variables functional form Fractional polynomials

More information

Propensity Score Methods for Causal Inference

Propensity Score Methods for Causal Inference John Pura BIOS790 October 2, 2015 Causal inference Philosophical problem, statistical solution Important in various disciplines (e.g. Koch s postulates, Bradford Hill criteria, Granger causality) Good

More information

Confounding and effect modification: Mantel-Haenszel estimation, testing effect homogeneity. Dankmar Böhning

Confounding and effect modification: Mantel-Haenszel estimation, testing effect homogeneity. Dankmar Böhning Confounding and effect modification: Mantel-Haenszel estimation, testing effect homogeneity Dankmar Böhning Southampton Statistical Sciences Research Institute University of Southampton, UK Advanced Statistical

More information

Marginal, crude and conditional odds ratios

Marginal, crude and conditional odds ratios Marginal, crude and conditional odds ratios Denitions and estimation Travis Loux Gradute student, UC Davis Department of Statistics March 31, 2010 Parameter Denitions When measuring the eect of a binary

More information

Logistic regression model for survival time analysis using time-varying coefficients

Logistic regression model for survival time analysis using time-varying coefficients Logistic regression model for survival time analysis using time-varying coefficients Accepted in American Journal of Mathematical and Management Sciences, 2016 Kenichi SATOH ksatoh@hiroshima-u.ac.jp Research

More information

TMA 4275 Lifetime Analysis June 2004 Solution

TMA 4275 Lifetime Analysis June 2004 Solution TMA 4275 Lifetime Analysis June 2004 Solution Problem 1 a) Observation of the outcome is censored, if the time of the outcome is not known exactly and only the last time when it was observed being intact,

More information

STAT 6350 Analysis of Lifetime Data. Failure-time Regression Analysis

STAT 6350 Analysis of Lifetime Data. Failure-time Regression Analysis STAT 6350 Analysis of Lifetime Data Failure-time Regression Analysis Explanatory Variables for Failure Times Usually explanatory variables explain/predict why some units fail quickly and some units survive

More information

8 Nominal and Ordinal Logistic Regression

8 Nominal and Ordinal Logistic Regression 8 Nominal and Ordinal Logistic Regression 8.1 Introduction If the response variable is categorical, with more then two categories, then there are two options for generalized linear models. One relies on

More information

Sections 2.3, 2.4. Timothy Hanson. Department of Statistics, University of South Carolina. Stat 770: Categorical Data Analysis 1 / 21

Sections 2.3, 2.4. Timothy Hanson. Department of Statistics, University of South Carolina. Stat 770: Categorical Data Analysis 1 / 21 Sections 2.3, 2.4 Timothy Hanson Department of Statistics, University of South Carolina Stat 770: Categorical Data Analysis 1 / 21 2.3 Partial association in stratified 2 2 tables In describing a relationship

More information

BIOS 312: Precision of Statistical Inference

BIOS 312: Precision of Statistical Inference and Power/Sample Size and Standard Errors BIOS 312: of Statistical Inference Chris Slaughter Department of Biostatistics, Vanderbilt University School of Medicine January 3, 2013 Outline Overview and Power/Sample

More information

A comparison of 5 software implementations of mediation analysis

A comparison of 5 software implementations of mediation analysis Faculty of Health Sciences A comparison of 5 software implementations of mediation analysis Liis Starkopf, Thomas A. Gerds, Theis Lange Section of Biostatistics, University of Copenhagen Illustrative example

More information

MAS3301 / MAS8311 Biostatistics Part II: Survival

MAS3301 / MAS8311 Biostatistics Part II: Survival MAS3301 / MAS8311 Biostatistics Part II: Survival M. Farrow School of Mathematics and Statistics Newcastle University Semester 2, 2009-10 1 13 The Cox proportional hazards model 13.1 Introduction In the

More information

Logistic regression: Miscellaneous topics

Logistic regression: Miscellaneous topics Logistic regression: Miscellaneous topics April 11 Introduction We have covered two approaches to inference for GLMs: the Wald approach and the likelihood ratio approach I claimed that the likelihood ratio

More information

ST3241 Categorical Data Analysis I Multicategory Logit Models. Logit Models For Nominal Responses

ST3241 Categorical Data Analysis I Multicategory Logit Models. Logit Models For Nominal Responses ST3241 Categorical Data Analysis I Multicategory Logit Models Logit Models For Nominal Responses 1 Models For Nominal Responses Y is nominal with J categories. Let {π 1,, π J } denote the response probabilities

More information

STA441: Spring Multiple Regression. More than one explanatory variable at the same time

STA441: Spring Multiple Regression. More than one explanatory variable at the same time STA441: Spring 2016 Multiple Regression More than one explanatory variable at the same time This slide show is a free open source document. See the last slide for copyright information. One Explanatory

More information

Hypothesis Testing, Power, Sample Size and Confidence Intervals (Part 2)

Hypothesis Testing, Power, Sample Size and Confidence Intervals (Part 2) Hypothesis Testing, Power, Sample Size and Confidence Intervals (Part 2) B.H. Robbins Scholars Series June 23, 2010 1 / 29 Outline Z-test χ 2 -test Confidence Interval Sample size and power Relative effect

More information

Tests for the Odds Ratio in a Matched Case-Control Design with a Quantitative X

Tests for the Odds Ratio in a Matched Case-Control Design with a Quantitative X Chapter 157 Tests for the Odds Ratio in a Matched Case-Control Design with a Quantitative X Introduction This procedure calculates the power and sample size necessary in a matched case-control study designed

More information

OUTCOME REGRESSION AND PROPENSITY SCORES (CHAPTER 15) BIOS Outcome regressions and propensity scores

OUTCOME REGRESSION AND PROPENSITY SCORES (CHAPTER 15) BIOS Outcome regressions and propensity scores OUTCOME REGRESSION AND PROPENSITY SCORES (CHAPTER 15) BIOS 776 1 15 Outcome regressions and propensity scores Outcome Regression and Propensity Scores ( 15) Outline 15.1 Outcome regression 15.2 Propensity

More information