PART II ADVANCED AND SPECIAL SUBJECTS
|
|
- Grant Webb
- 6 years ago
- Views:
Transcription
1 PART II ADVANCED AND SPECIAL SUBJECTS 1 PART II ADVANCED AND SPECIAL SUBJECTS
2 PART II ADVANCED AND SPECIAL SUBJECTS 2 1 Computer Experiment 7: Interpretation of Structure, Bonding and Reactivity Using Orbitals 1.1 Background Hückel MO Theory The Hückel theory is the simplest semi- empirical method for the description of molecular systems. It was developed in 1931 by Erich Hückel for the calculation of planar conjugated hydrocarbons. Later Hoffmann generalized this very successful concept to general molecules and applied it with great success to many areas of chemistry. He termed his method the extended Hückel theory (EHT). The appeal of the Hückel and EHT methods is that they can provide many qualitative insights into the behaviour of molecules, in particular of molecules that are closely related. 1 It does not, however, provide reliable numbers. For this purpose ab initio or DFT methods must be consulted. 2 A. Extended Hückel MO theory EHT theory might be thought of as an essentially very simple, semiempirical approximation of Hartree- Fock theory. In Hartree- Fock theory, a single Slater determinant is taken as an Ansatz for the description of the N- electron system. The single determinant is composed of one- particle molecular orbitals (MOs) that are found as solutions to a pseudo- eigenvalue problem of the form: ˆF! i = " i! i ( 1) Where ˆF is the Fock operator, which describes the motion of a single electron in the field of the nuclei and the remaining electrons.the MOs are written as a linear combination of atomic orbitals (LCAO- Ansatz): 1 Recommended literature to this chapter is: Ian Fleming, Grenzorbitale und Reaktionen organischer Verbindungen, VCH Even today it might not be a bad idea to do a few simple EHT calculations at the beginning of a project if one has no familiarity with the systems being investigated and to use the results to gain some feeling for the factors that might be worthwhile to examine with more rigorous electronic structure methods.
3 PART II ADVANCED AND SPECIAL SUBJECTS 3 ( ) =! c µi " µ ( r)! i r µ ( 2) After which the calculation boils down to the solution of a generalized eigenvalue problem for the determination of the unknown MO coefficients c µi and the orbital energies! i Fc =!Sc ( 3) Where! is a diagonal matrix with orbital energies and the matrix elements of the Fock matrix F and the overlap matrix S are defined by: F µ! = " µ ˆF "! ( 4) S µ! = " µ "! ( 5) As pointed out in the introduction, Hartree- Fock calculations require the use of large basis sets and iterative cycles for the optimization of the MOs. In EHT theory, one focuses on the qualitative shape of the valence orbitals and usually pays attention to those orbitals that are located near the HOMO- LUMO gap (the frontier orbitals ). According to frontier molecular orbital theory (described below in chapter 1.1.3) these are the most important ones for the reactivity of the system. In order to get an impression of how these orbitals may look like it is not necessary to solve the rather laborious HF equations in fact this was a major challenge for all but the smallest molecules in the 1960s when EHT theory was suggested it is enough to replace the Fock operator by a semiempirical effective one- electron operator ĥeff and to only consider the minimal chemical set of valence orbitals 3 as {!}. It is not necessary to specify the operator ĥeff precisely. In order to solve eq (3), it is only necessary to specify the matrix elements of this operator. In EHT theory they are given by: 3 For example, for a carbon atom one includes 2s, 2p x, 2p y and 2p z and for titanium one would use 3d xy, 3d x2- y2, 3d xz, 3d yz, 2d z2- r2, 4s and perhaps also 4p x, 4po y and 4p z.
4 PART II ADVANCED AND SPECIAL SUBJECTS 4 eff h µ! " $ = " µ ĥ eff "! = # if µ =! µ # $ $ µ! if µ!! % $ ( 6) The diagonal elements! µ represent the energy of the atomic orbital! µ in the free atom. It is approximated by the so- called valence shell ionization energy (VOIP) which can be determined from atomic spectroscopy. 4 These numbers are negative and represent the average energy required to remove an electron from the given orbital (2s, 2p, 3d, ) The lower these energies, the higher the electron attracting ability of the atom. The off- diagonal matrix elements are called resonance integrals. They measure the strength of the interaction between two atomic orbitals. Intuitively, it is reasonable to expect that these integrals are related to the overlap integrals. Thus, in EHT they are given by: 5 ( )! µ" = 1 2 KS µ" # µ + # " ( 7) The constant K ~ 1.75 is an empirical constant to adjust the resonance integrals to more reasonable values given that the form of eq (7) is an oversimplification. In order to provide a feel for the values of the parameters we give them for elements H- Ne in Table 1:. Table 1: VOIPs for elements H- Ne to be used together with EHT calculations. Note, that the negative of the values listed below is to be used. Element αs (ev) αp (ev) H He Li Be B C N The values of these parameters are tabulated in multiple places. Since there are many ways to determine these parameters from the experimental data, no consensus has been reached in the community about a universal set of VOIPs. 5 There are many modifications of the formulas for the off- diagonal. It is questionable if any of these is really to be preferred over another one and in this situation Ockham s razor principle applies which essentially states that the simplest solution is just as good as any.
5 PART II ADVANCED AND SPECIAL SUBJECTS 5 O F Ne Following the solution of the generalized eigenvalue problem in eq (3) and with the approximation described above, the resulting MOs are filled in order of increasing energy with the available electrons in keeping with the Aufbau principle in order to find the electronic ground state. Since the approximations are so simple, the total energy in the EHT method is simply the sum of orbital energies: E EHT = " n i! i ( 8) i Where n i is the occupation number of the i th orbital (=0,1 or 2). In connection with Walsh s rules, we will see below that the variations of the orbital energies with geometry can be used to obtain quite important and general insights about the geometric structures of molecules. In fact, many areas of chemistry have profited from performing such qualitative calculations. B. Hückel theory for π electron systems (HMO) Although it existed prior to EHT theory, the HMO theory of aromatic π- systems might be thought of as a further simplification of the EHT method. In this case, one only considers the π- electrons of the investigated molecules and only keeps the pz orbitals of the atoms involved in the π- system. Substituent effects are included in an approximate manner by modifying the α- parameters of the atoms to which the substituents are attached. Furthermore, in HMO theory, the off- diagonal elements of the overlap matrix are neglected such that the final eigenvalue problem to be solved is: h eff c =!c ( 9) Finally, one only keeps resonance integrals between atoms that are nearest neighbours and assigns a constant value to them. Thus, the calculations also become geometry independent and the only thing that is required in order to perform a HMO calculation is a molecular connectivity. Although these approximations clearly
6 PART II ADVANCED AND SPECIAL SUBJECTS 6 represent a gross oversimplification of the molecular electronic structure problem, it can hardly be overemphasized how much HMO theory has shaped chemical thinking about aromatic molecules and their properties. 6 However, we will not pursue HMO theory in this course but stay in the framework of the EHT method below Walsh s Rules 7 Walsh diagrams are the graphical representation of the MO energies in dependence of a geometrical parameter, most commonly a bond angle. For example, consider the case of the H3 molecule in its linear and triangular forms as shown in Figure 1. It is observed that upon bending, the energy of the nonbonding σu orbital (it correlates with a b2 orbital in C2v symmetry) strongly increases and finally correlates with one component of the antibonding e- orbital in the final D3h structure. Since there are three electrons to be filled into the three MOs, it is predicted that H3 should be linear ((1σg) 2 (1σu) 1 configuration) while H3 + should be triangular ((a1) 2 configuration) since the a1 orbital is stabilized upon bending. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 1: Walsh diagram for the distortion of the H 3 system. The variation of a geometrical degree of freedom may cause a crossing of different MO- levels. In general, such a crossing is allowed if the two MOs transform under different irreducible representations and is avoided otherwise.(the famous non- crossing rule; compare Figure 2). The non- crossing rule is particularly important for the interpretation of photochemical reactions. The occurrence of a HOMO / LUMO 6 The classic text on HMO theory is E. Heilbronner, H. Bock Das HMO Modell und seine Anwendung. Verlag Chemie, Weinheim/Bergstrasse, For a detailed ab initio perspective on Walsh s rules see: Buenker, R.J.M; Peyerimhoff, S.D. Chem. Rev., 1974, 74, 127
7 PART II ADVANCED AND SPECIAL SUBJECTS 7 crossing with identical symmetry implies that the reaction is symmetry forbidden, due to the non- conservation of the orbital symmetry of the occupied MOs. Therefore a high activation energy is expected. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 2: Crossing and avoided crossing of two energy levels. In Figure 3 the Walsh diagram for the bending mode of a AH2 molecule is shown. The energy of the lowest valence MOs decrease upon bending as three center bonding between s- AOs becomes more favourable in the bent form. The 1 σu- MO is strongly bonding in the linear case, but upon reducing the angle, the 1b2- MO becomes only weakly bonding, because in the linear case the 2py- AOs can interact more strongly with the AOs of the H- atoms. The 1 πu- MO separates in two components, 1b1 and 3a1. The energy of the 1b1 MO is almost constant while the 3a1- MO becomes a bonding MO upon bending. The overlap of the 2pz- AOs from A with 1s- AOs from the H- atoms is zero in the linear case, but reducing the angle results in a three- center bonding.
8 PART II ADVANCED AND SPECIAL SUBJECTS 8 The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 3: Walsh diagram for a AH 2 molecule Approximate Intermolecular Interactions In this section we will indicate how the energies and shapes of molecular orbitals can be related to chemical reactivity. One of the key features of chemical reactions is the activation energy that has to be overcome by the reactants. On the basis of perturbation theory and EHT, Klopman and Salem [G. Klopman, JACS, 90, 223 (1968); S. Salem, JACS, 90, 543 (1968)] developed a simple but highly useful decomposition scheme for the interaction energy ΔE of two approaching molecules A and B into contributions from occupied and unoccupied orbitals. All quantities in (10) are obtained for the separate, non- interacting molecules. A,B!E = "#(q µ +q! )" µ! S µ! µ! # + Q I Q J I <J #R IJ # 2( c aµ c q! " µ! ) 2 2( c occ unocc bµ c p! " µ! ) 2 occ unocc µ! µ! + # # + # # a q E a "E q b p E b "E p ( 10) This expression although somewhat lengthy is already simplified (the approach does not take electron- electron interaction into account). So let us discuss the terms step by step. The first term is a double sum over all atomic orbitals (AOs) μ of # 8 Kutzelnigg, W., Einführung in die Theoretische Chemie Band 2, VCH: Weinheim, 1994
9 PART II ADVANCED AND SPECIAL SUBJECTS 9 molecule A and ν of molecule B. The q s are the AO occupation numbers of the non- interacting molecules (in the original paper called charge densities), β is similar but not identical to the resonance integral of Hückel theory (it includes only the electron- nuclear attraction terms), and S is the overlap integral mentioned previously. Since β is always negative, this term is positive and is basically responsible for the occurrence of activation barriers within this model. Its origin is the repulsive interaction between doubly occupied molecular orbitals (MOs) of A and B which arises from the non- symmetric level splitting (Figure 4). Figure 4: Interaction of Two Occupied Molecular Orbitals The second term, a sum over all atoms I of molecule A and atoms J of molecule B, describes the Coulomb interaction between pairs of atoms with net charge Q at distance R (ε is the dielectric constant). The two last terms include sums over all occupied MOs a of A and unoccupied MOs q of B and vice versa. For each pair of orbitals the term consists of sums of corresponding MO coefficients c weighted with β. The dominator is the MO energy difference. This part describes the stabilization due to formation of orbitals combining occupied A MOs with unoccupied B MOs or vice versa in the complex [AB]*. Figure 5: Interaction of an Occupied and an Unoccupied Orbital.
10 PART II ADVANCED AND SPECIAL SUBJECTS Frontier orbital picture It is exactly this last effect which is widely used in further simplified qualitative approaches to determine chemical reactivity. If the two reacting molecules are similar, the smallest energy differences are those between the highest occupied MOs (HOMOs) and the lowest unoccupied MOs (LUMOs). If it is assumed that the other contributions to the last two terms of (1) are always of similar magnitude, the HOMO- LUMO contributions will dominate. If it is further assumed that the first term is roughly independent from the intermolecular orientation, only two main contributions are left for the determination of the feasibility and, sometimes even more important, the regioselectivity of chemical reactions: the Coulomb term and the MO coefficients of the frontier orbitals, HOMO and LUMO. This concept is used e.g. to estimate the relative reactivity of different compounds C towards a given reactant R via calculation of E(HOMO,C)- E(LUMO,R)+E(HOMO,R)- E(LUMO,C). The frontier orbital approach is also applied to ionic reactions in organic chemistry. In electrophilic or nucleophilic reactions the inorganic ions are classified as hard or soft. A hard nucleophilic has a low HOMO energy, a hard electrophilic has a high LUMO energy, and vice versa. In nucleophilic reactions, a hard anion (e.g. OH -, NH2 - ) will attack preferentially the atom with the highest positive charge Q of an organic molecule. In the frontier orbital picture this is due to the large energetic difference between the anion s HOMO and the molecule s LUMO making the last term in the above equation small so that the Coulomb part prevails. On the other hand, the preferred site for a soft anion (CN -, (CH2,Ph)- C- O - ) is the atom with the largest contribution to the molecule s LUMO The Woodward- Hoffman Rules In reaction theory synchronous organic reactions such as pericyclic reactions would in general take place under preservation of the orbital symmetry. Each occupied MO of the reactants will result in an occupied MO of the products with the same symmetry. Experimentally, there are two ways of activating such reactions: 1. Thermal activation
11 PART II ADVANCED AND SPECIAL SUBJECTS Photochemical activation For the theoretical description, the main difference between these two methods lies in the MOs that are involved in these processes. The photochemical activation will result in the excitation of an electron from a bonding (or nonbonding) into an anti- bonding orbital. The resulting state may have a different symmetry than the ground state and will therefore also have a distinct reactivity (Figure 6). Essential difference between photochemical and thermal reactions must therefore be expected and are also observed in practice. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 6: The orbitals that are involved in the different activation cases. 9 A. Electro- cyclic reactions Electro- cyclic reactions may be described as an isomerisation of open- chain polyens to ring isomers which takes place under thermal or photochemical activation. In order to close the ring an additional σ- bond has to created at the expense of a π- bond. In EHT language, the π- MOs on one fragment have to overlap with correct phases with the orbitals of another fragment in order to form a σ- bond. The example of 1,3- Butadiene is shown above in (Figure 6). In fact, it can be determined in advance, when a suitable constructive overlap of the π- orbitals is possible it 9 Woodward, R. B.; Hoffmann R. Angew. Chem. 81. Jahrgang 1969, 21, 797
12 PART II ADVANCED AND SPECIAL SUBJECTS 12 simply depends on the number of π- electrons. As long as both fragments stay in their electronic ground state 4n (n=1,2,...) π- electrons in the molecule lead ti in- phase arrangement of the terminal π- orbitals, whereas 4n+2 (n=1,2,...) π- electrons result in an out- of- phase arrangement. In order to build up a new σ- bond, the π- orbitals in the molecule with 4n π- electrons have to rotate in the same direction (conrotatory) in order to result in a bonding orbital, while the molecules containing 4n+2 π- electrons are obliged to rotate in opposite directions (disrotatory) (compare Figure 7) For photochemical reactions the requirements for constructive overlap are exactly the reverse of the one described above. Therefore, a system with 4n π- electrons has to rotate in opposite directions, whereas a system containing 4n+2 π- electrons needs to rotate in the same direction. Since the two possibilities lead to different stereoisomers of the products that are formed (Figure 7), one can readily predict whether one has to activate a given reaction photochemically or thermally in order to obtain the desired product. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 7: Example for con- and dis- rotatory rotation of the terminal p z orbitals in case of thermal activation
13 PART II ADVANCED AND SPECIAL SUBJECTS 13 Table 2: Summary of allowed and forbidden electrocyclic reactions based on the Woodward- Hoffman rules. m+n-electro-cyclic reactions Thermal activation ground state Photochemical activation excited state forbidden allowed allowed forbidden M+n = 4q q=1, 2,... disrotatory conrotatory disrotatory conrotatory M+n = 4q + 2 q=1, 2,... conrotatory disrotatory conrotatory disrotatory B. Cycloadditions In concerted cycloadditions two new σ- bonds are built up due to overlap of the π- orbitals of both reactants. The location of the σ- bond is arranged either on the same side of the reacting π- system or on the opposite side. The first case is referred to as a suprafacial reaction and the second case as a antarafacial process. The alignment of the responsive π- orbitals is again dependent on the number of π- electrons and on the form of activation as summarized in Figure 8, Figure 9 and Table 3. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 8: Orbital symmetry of a photochemical cyclic addition.
14 PART II ADVANCED AND SPECIAL SUBJECTS 14 The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 9: Orbital symmetry of a thermal cyclic addition. (a) anti- binding (b) binding, but geometrically difficult
15 PART II ADVANCED AND SPECIAL SUBJECTS 15 Table 3: Summary of the Woodward- Hoffman rules. m+n-cyclic addition Thermal activation ground state Photochemical activation excited state forbidden allowed allowed forbidden m+n = 4q q=1, 2,... Π m a + Π n a antara, antara Π m s + Π n a supra, antara Π m s + Π n s supra, supra Π m a + Π n s antara, supra m+n = 4q + 2 q=1, 2,... Π m a + Π n s antara, supra Π m s + Π n s supra, supra Π m s + Π n a supra, antara Π m a + Π n a antara, antara Limitations of the Frontier Molecular Orbital Approach Although the above scheme has been proven to give qualitatively correct predictions in many cases, as we will see below, it is of course limited due to its approximate nature. From the quantum- chemical viewpoint, it is mainly the use of atomic charges and LUMO energy and shape that makes the simple approach questionable. Atomic charges are no observables and strongly depend on the analysis and the basis set. But also the shape of the orbitals is method and basis set dependent. The MOs employed in the above analysis are obtained with minimal basis sets in the extended Hückel framework. Nowadays, one of course wants to go beyond this simple level of theory and use HF or DFT calculations as basis for analysis of chemical reactivity. And here arises a fundamental problem: For a given method, the HOMO converges to something definite while the unoccupied orbitals do not. Remember that only the occupied orbitals, either included in the Slater determinant in HF theory or used to calculate the electron density in DFT, are optimized by the variation procedure. The only criterion for unoccupied orbitals is their orthogonality to the occupied space. In the limit of a complete basis set, the unoccupied space forms a continuum and the LUMO is not really defined. We will demonstrate this in an example in this experiment. In HF theory even the energies Ep, Eq of the unoccupied MOs are fundamentally wrong because the fictitious (virtual) electrons in the UMOs experience the repulsive field of all N electrons of
16 PART II ADVANCED AND SPECIAL SUBJECTS 16 the system, whereas the occupied orbitals experience the correct N- 1 electron potential. Their energy can be related to physical properties (ionization energies) via the Koopmans theorem. The situation in DFT is not much better. Here the virtual MOs experience the correct N- 1 electron repulsive field, but the energies Ea, Eb of the occupied MOs are incorrect due to artificial self- interaction of the electrons which is caused by the approximate description of electron exchange in DFT. As a workaround of the above mentioned shortcomings of HF and DFT, hybrid methods such as B3LYP have been developed where the electron exchange is described by a mixture of the exact one- determinant expression provided by HF theory and a density functional. The mixing coefficient is usually treated as an empirical parameter. Its value is determined by optimal reproduction of experimental properties (including ionization energies and optical spectra). In this way one uses the cancellation of the inherent errors of both approaches. Having this in mind, it is not surprising that the frontier orbital approach fails in some cases. Nevertheless, as a qualitative tool to understand fundamental reasons for the course of chemical reactions, it is still worth to discuss. 1.2 Description of the Experiment Frontier Molecular Orbital Theory As an example we study the reactivity of the pyridinium cation shown below: Figure 10: The pyridinium cation studied in this experiment. Use the Gaussian and/or ORCA programs and one of the methods RHF, B3LYP, or BP86 to calculate the most reactive sites of the pyridinium cation in a reaction with a hard and with a soft nucleophilic, respectively, based on an analysis of the Mulliken net charges and the LUMO coefficients.
17 PART II ADVANCED AND SPECIAL SUBJECTS 17 Create the molecular structure as described in previous experiments, perform a structure optimization and analyse the wavefunction of the final structure. Check if the Mulliken net charges and the shape of the LUMO change if you increase the basis set from SVP to TZVP. Will the qualitative results of the frontier orbital analysis change? Hint: instead of analysing the MO coefficients it is sufficient to draw an orbital picture using MOLDEN or MOLEKEL. In any case the keyword POP=FULL is needed in Gaussian (ORCA prints a Loewdin analysis of each MO by default). Experimentally it is known that hard nucleophilics (OH -, NH2 - ) prefer C(2), and soft nucleophilics (CN -, (CH2,Ph)- C- O - ) prefer C(4). Verify the relative reactivity of the two sites versus OH- and CN- by calculating the energy difference of the four transition structures CN(2), CN(4), OH(2) and OH(4) as shown below. In this case it is sufficient to fully optimize the structures, no TS search is necessary. Figure 11: Structures of the Reaction Products to be Optimized The Woodward- Hoffman Rules - Dissociation of formaldehyde Use the ORCA program to optimize the following structures employing HF/6-311G*
18 PART II ADVANCED AND SPECIAL SUBJECTS 18 and generate.cube files for each MO using orca_plot. Alternatively, you can use the Gaussian program employing HF/6-311G* and generate.chk files. A. H2C=O B. CO C. H2 Classify the HF valence orbitals and the lowest unoccupied orbitals according to their irreducible representation (irrep). Investigate the orbital symmetry concerning the symmetry elements of the point group C2v. Identity (E) two- fold rotation axis (C2) mirror- plane in the xz- plane (σxz) mirror- plane in the yz- plane (σyz) The image cannot be displayed. Your computer may not have enough memory to open the image, or the image may have been corrupted. Restart your computer, and then open the file again. If the red x still appears, you may have to delete the image and then insert it again. Figure 12: Coordinate system used in this experiment. Table 4: The character table of the C 2v point group. C 2v E C 2 σ xz σ yz A z x 2, y 2, z 2 A R z xy B x, R y xz
19 PART II ADVANCED AND SPECIAL SUBJECTS 19 B y, R x Draw a MO diagram for H2C=O on the one side and for CO + H2 on the other side. Connect orbitals which belong to the same irrep with each other. Repeat these steps in Cs symmetry with the symmetry elements E and σ. Remember that there are two possibilities for the orientation of formaldehyde in this point group. What should attract your attention? Walsh s Rules Perform calculations on the following molecules with the Hartree- Fock method and the SVP basis set and the ORCA program: LiH2 + (distance= 1.7 Angström) BeH2 (distance= 1.34 Angström) CH2 (S=0; RKS calculation) (distance=1.078 Angström) CH2 (S=1; ROHF calculation; keyword! ROHF) (distance Angström) H2O (distance=0.956 Angström) First look at the variation of the total energy as a function of angle by performing a rigid scan of that angle and plot the results with xmgrace. An input is: # Scan the angle! RHF SVP %paras Ang= 180,90,17 end * int 0 1 O H H {Ang} 0 * A summary of the total energy as a function of angle will be printed at the bottom of the output file. Now look at the orbitals and their energies at the bent geometry and the linear geometry. Plot them. Discuss the variation of the orbital energies and the total energy as a function of bond angle. Do you find Walsh s results to be consistent with the ab initio results? ADDITIONAL CALCULATIONS (VOLUNTARY)
20 PART II ADVANCED AND SPECIAL SUBJECTS 20 Plot the variation of the nuclear repulsion energy, the one- electron energy, the two- electron energy as well as the kinetic energy of the system as a function of angle. Also plot the sum of the occupied MO energies weighted by their occupancy as a function of bond angle. These data must be extracted from the ORCA output file. What do you find? What is the physical reason for obtaining a bent geometry versus a linear geometry?.
Be H. Delocalized Bonding. Localized Bonding. σ 2. σ 1. Two (sp-1s) Be-H σ bonds. The two σ bonding MO s in BeH 2. MO diagram for BeH 2
The Delocalized Approach to Bonding: The localized models for bonding we have examined (Lewis and VBT) assume that all electrons are restricted to specific bonds between atoms or in lone pairs. In contrast,
More informationFigure 1: Transition State, Saddle Point, Reaction Pathway
Computational Chemistry Workshops West Ridge Research Building-UAF Campus 9:00am-4:00pm, Room 009 Electronic Structure - July 19-21, 2016 Molecular Dynamics - July 26-28, 2016 Potential Energy Surfaces
More informationConjugated Systems, Orbital Symmetry and UV Spectroscopy
Conjugated Systems, Orbital Symmetry and UV Spectroscopy Introduction There are several possible arrangements for a molecule which contains two double bonds (diene): Isolated: (two or more single bonds
More informationMolecular Orbital Theory This means that the coefficients in the MO will not be the same!
Diatomic molecules: Heteronuclear molecules In heteronuclear diatomic molecules, the relative contribution of atomic orbitals to each MO is not equal. Some MO s will have more contribution from AO s on
More informationNew σ bond closes a ring. Loss of one π bond and gain of one σ bond
CHAPTER 1 Pericyclic Reactions 1.1 INTRODUCTION Pericyclic reactions are defined as the reactions that occur by a concerted cyclic shift of electrons. This definition states two key points that characterise
More informationσ u * 1s g - gerade u - ungerade * - antibonding σ g 1s
One of these two states is a repulsive (dissociative) state. Other excited states can be constructed using linear combinations of other orbitals. Some will be binding and others will be repulsive. Thus
More informationThe symmetry properties & relative energies of atomic orbitals determine how they react to form molecular orbitals. These molecular orbitals are then
1 The symmetry properties & relative energies of atomic orbitals determine how they react to form molecular orbitals. These molecular orbitals are then filled with the available electrons according to
More informationMolecular Orbital Theory. Molecular Orbital Theory: Electrons are located in the molecule, not held in discrete regions between two bonded atoms
Molecular Orbital Theory Valence Bond Theory: Electrons are located in discrete pairs between specific atoms Molecular Orbital Theory: Electrons are located in the molecule, not held in discrete regions
More informationPericyclic Reactions and Organic Photochemistry S. Sankararaman Department of Chemistry Indian Institute of Technology, Madras
Pericyclic Reactions and Organic Photochemistry S. Sankararaman Department of Chemistry Indian Institute of Technology, Madras Module No. #01 Lecture No. #03 Pericyclic reactions Introduction to Electrocyclic
More informationMolecular Orbital Theory
Molecular Orbital Theory 1. MO theory suggests that atomic orbitals of different atoms combine to create MOLECULAR ORBITALS 2. Electrons in these MOLECULAR ORBITALS belong to the molecule as whole 3. This
More informationORGANIC - BRUICE 8E CH.8 - DELOCALIZED ELECTRONS AND THEIR EFFECT
!! www.clutchprep.com CONCEPT: RESONANCE STRUCTURES Resonance theory is used to represent all the different ways that the same molecule can distribute its electrons. Atoms move! The only thing that moves
More informationConjugated Systems. With conjugated double bonds resonance structures can be drawn
Conjugated Systems Double bonds in conjugation behave differently than isolated double bonds With conjugated double bonds resonance structures can be drawn With isolated double bonds cannot draw resonance
More informationChem 634. Pericyclic Reactions. Reading: CS-B Chapter 6 Grossman Chapter 4
Chem 634 Pericyclic eactions eading: CS-B Chapter 6 Grossman Chapter 4 Pericyclic eactions Definition: Continuous, concerted reorganization of electrons cyclic transition state no intermediate, single
More informationPericyclic Reactions: Electrocyclic Reaction
Pericyclic Reaction Pericyclic Reactions: Electrocyclic Reaction 1. Electrocyclic ring closing 2. Electrocyclic ring opening Electrocyclic ring closing reaction is characterized by a. The formation of
More informationAN INTRODUCTION TO MOLECULAR ORBITALS
AN INTRODUCTION TO MOLECULAR ORBITALS by YVES JEAN and FRANCOIS VOLATRON translated and edited by Jeremy Burdett New York Oxford OXFORD UNIVERSITY PRESS 1993 Contents Introduction, xiii I INTRODUCTION
More informationSame idea for polyatomics, keep track of identical atom e.g. NH 3 consider only valence electrons F(2s,2p) H(1s)
XIII 63 Polyatomic bonding -09 -mod, Notes (13) Engel 16-17 Balance: nuclear repulsion, positive e-n attraction, neg. united atom AO ε i applies to all bonding, just more nuclei repulsion biggest at low
More information17.1 Classes of Dienes
17.1 Classes of Dienes There are three categories for dienes: Cumulated: pi bonds are adjacent. Conjugated: pi bonds are separated by exactly ONE single bond. Isolated: pi bonds are separated by any distance
More informationHückel Molecular Orbital (HMO) Theory
Hückel Molecular Orbital (HMO) Theory A simple quantum mechanical concept that gives important insight into the properties of large molecules Why HMO theory The first MO theory that could be applied to
More informationChemistry 431. Lecture 14. Wave functions as a basis Diatomic molecules Polyatomic molecules Huckel theory. NC State University
Chemistry 431 Lecture 14 Wave functions as a basis Diatomic molecules Polyatomic molecules Huckel theory NC State University Wave functions as the basis for irreducible representations The energy of the
More informationORGANIC - BROWN 8E CH DIENES, CONJUGATED SYSTEMS, AND PERICYCLIC REACTIONS
!! www.clutchprep.com CONCEPT: INTRODUCTION TO CONJUGATION Conjugation exists when three or more atoms with the ability to resonate are adjacent to each other (overlapping). Conjugation provides an electron
More informationLecture 26: Qualitative Molecular Orbital Theory: Hückel Theory
MASSACHUSETTS INSTITUTE OF TECHNOLOGY 5.6 Physical Chemistry I Fall, 07 Professor Robert W. Field Lecture 6: Qualitative Molecular Orbital Theory: Hückel Theory Models in Physical Chemistry Our job is
More information3: Many electrons. Orbital symmetries. l =2 1. m l
3: Many electrons Orbital symmetries Atomic orbitals are labelled according to the principal quantum number, n, and the orbital angular momentum quantum number, l. Electrons in a diatomic molecule experience
More informationMOLECULAR STRUCTURE. Molecular Structure - B. Molecular Structure - B. Molecular Structure - B. Molecular Structure - B. Molecular Structure - B
MOLECULAR STRUCTURE Molecular Orbital all orbitals of the appropriate symmetry contribute to a molecular orbital. Bundet Boekfa Chem Div, Faculty Lib Arts & Sci Kasetsart University Kamphaeng Saen Campus
More information5.04 Principles of Inorganic Chemistry II
MIT OpenCourseWare http://ocw.mit.edu 5.04 Principles of Inorganic Chemistry II Fall 008 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms. 5.04, Principles
More informationPericyclic reactions
Pericyclic reactions In pericyclic reactions the breaking and making of bonds occur simultaneously by the way of a single cyclic transition state (concerted reaction). There are no intermediates formed
More informationLecture 14 February 3, 2014 Rules for Chem. React. - Woodward-Hoffmann
Lecture 14 February 3, 2014 Rules for Chem. React. - Woodward-Hoffmann Nature of the Chemical Bond with applications to catalysis, materials science, nanotechnology, surface science, bioinorganic chemistry,
More informationLecture 9-10 January 25-27, 2012 Rules for Chem. React. - Woodward-Hoffmann
Lecture 9-10 January 25-27, 2012 Rules for Chem. React. - Woodward-Hoffmann Nature of the Chemical Bond with applications to catalysis, materials science, nanotechnology, surface science, bioinorganic
More informationA Rigorous Introduction to Molecular Orbital Theory and its Applications in Chemistry. Zachary Chin, Alex Li, Alex Liu
A Rigorous Introduction to Molecular Orbital Theory and its Applications in Chemistry Zachary Chin, Alex Li, Alex Liu Quantum Mechanics Atomic Orbitals and Early Bonding Theory Quantum Numbers n: principal
More informationElectronic Spectroscopy of Polyatomics
Electronic Spectroscopy of Polyatomics We shall discuss the electronic spectroscopy of the following types of polyatomic molecules: 1. general AH 2 molecules, A = first-row element 2. formaldehyde 3. benzene
More informationChapter 4 Symmetry and Chemical Bonding
Chapter 4 Symmetry and Chemical Bonding 4.1 Orbital Symmetries and Overlap 4.2 Valence Bond Theory and Hybrid Orbitals 4.3 Localized and Delocalized Molecular Orbitals 4.4 MX n Molecules with Pi-Bonding
More informationIFM Chemistry Computational Chemistry 2010, 7.5 hp LAB2. Computer laboratory exercise 1 (LAB2): Quantum chemical calculations
Computer laboratory exercise 1 (LAB2): Quantum chemical calculations Introduction: The objective of the second computer laboratory exercise is to get acquainted with a program for performing quantum chemical
More informationHints on Using the Orca Program
Computational Chemistry Workshops West Ridge Research Building-UAF Campus 9:00am-4:00pm, Room 009 Electronic Structure - July 19-21, 2016 Molecular Dynamics - July 26-28, 2016 Hints on Using the Orca Program
More informationIn the fourth problem set, you derived the MO diagrams for two complexes containing Cr-Cr bonds:
Problem 1 (2 points) Part 1 a. Consider the following V III complexes: V(H2O)6 3+, VF6 3-, and VCl6 3-. The table below contains the energies corresponding to the two lowest spin-allowed d-d transitions
More informationValence bond theory accounts, at least qualitatively, for the stability of the covalent bond in terms of overlapping atomic orbitals.
Molecular Orbital Theory Valence bond theory accounts, at least qualitatively, for the stability of the covalent bond in terms of overlapping atomic orbitals. Using the concept of hybridization, valence
More informationNH 3 H 2 O N 2. Why do they make chemical bonds? Molecular Orbitals
N 2 NH 3 H 2 O Why do they make chemical bonds? 5 Molecular Orbitals Why do they make chemical bonds? Stabilization Bond energy Types of Chemical Bonds Metallic Bond Ionic Bond Covalent Bond Covalent Bond
More information17.1 Classes of Dienes
W 2/1 Due: HW14, spec03 Due: n/a M 2/6 Lecture HW14 grading Lect17a Conjugated π systems Lecture quiz Lect17b Lab Lab02 Qual Analysis II (cont) 7-1 17.1 Classes of Dienes There are three categories for
More informationSemi-Empirical MO Methods
Semi-Empirical MO Methods the high cost of ab initio MO calculations is largely due to the many integrals that need to be calculated (esp. two electron integrals) semi-empirical MO methods start with the
More informationBe H. Delocalized Bonding. Localized Bonding. σ 2. σ 1. Two (sp-1s) Be-H σ bonds. The two σ bonding MO s in BeH 2. MO diagram for BeH 2
The Delocalized Approach to Bonding: The localized models for bonding we have examined (Lewis and VBT) assume that all electrons are restricted to specific bonds between atoms or in lone pairs. In contrast,
More informationPericyclic Reactions page 1
Pericyclic Reactions page INTRDUCTIN T PERICCLIC REACTINS. Reaction classes In the broadest sense there are three reaction classes, characterised by the way that the electrons behave in reaction mechanisms.
More informationChemistry 3211 Coordination Chemistry Part 3 Ligand Field and Molecular Orbital Theory
Chemistry 3211 Coordination Chemistry Part 3 Ligand Field and Molecular Orbital Theory Electronic Structure of Six and Four-Coordinate Complexes Using Crystal Field Theory, we can generate energy level
More informationChem 4502 Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi. Lecture 28, December 08, 2014
Chem 4502 Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi Lecture 28, December 08, 2014 Solved Homework Water, H 2 O, involves 2 hydrogen atoms and an oxygen
More informationElectronic Structure Models
Electronic Structure Models Hückel Model (1933) Basic Assumptions: (a) One orbital per atom contributes to the basis set; all orbitals "equal" (b) The relevant integrals involving the Hamiltonian are α
More information5.4. Electronic structure of water
5.4. Electronic structure of water Water belongs to C 2v point group, we have discussed the corresponding character table. Here it is again: C 2v E C 2 σ v (yz) σ v (xz) A 1 1 1 1 1 A 2 1 1-1 -1 B 1 1-1
More informationChem 3502/4502 Physical Chemistry II (Quantum Mechanics) 3 Credits Spring Semester Christopher J. Cramer. Lecture 30, April 10, 2006
Chem 3502/4502 Physical Chemistry II (Quantum Mechanics) 3 Credits Spring Semester 20056 Christopher J. Cramer Lecture 30, April 10, 2006 Solved Homework The guess MO occupied coefficients were Occupied
More informationCHAPTER 8. EXPLORING THE EFFECTS OF STRUCTURAL INSTABILITIES AND OF TRIPLET INSTABILITY ON THE M-I PHASE TRANSITION IN (EDO-TTF)2PF6.
CHAPTER 8. EXPLORING THE EFFECTS OF STRUCTURAL INSTABILITIES AND OF TRIPLET INSTABILITY ON THE M-I PHASE TRANSITION IN (EDO-TTF)2PF6. The thermal metal-insulator phase transition in (EDO-TTF)2PF6 is attributed
More informationElectronegativity is a very useful concept for the explanation or understanding of chemical reactivity throughout the periodic table.
1.6. Review of Electronegativity (χ) CONCEPT: Electronegativity is a very useful concept for the explanation or understanding of chemical reactivity throughout the periodic table. There are many definitions
More informationAtomic and Molecular Orbitals
7 Atomic and Molecular Orbitals Chemists have developed a variety of methods for describing electrons in molecules. Lewis structures are the most familiar. These drawings assign pairs of electrons either
More informationLecture 12. Symmetry Operations. NC State University
Chemistry 431 Lecture 12 Group Theory Symmetry Operations NC State University Wave functions as the basis for irreducible representations The energy of the system will not change when symmetry Operations
More informationChapter 5. Molecular Orbitals
Chapter 5. Molecular Orbitals MO from s, p, d, orbitals: - Fig.5.1, 5.2, 5.3 Homonuclear diatomic molecules: - Fig. 5.7 - Para- vs. Diamagnetic Heteronuclear diatomic molecules: - Fig. 5.14 - ex. CO Hybrid
More information5.80 Small-Molecule Spectroscopy and Dynamics
MIT OpenCourseWare http://ocw.mit.edu 5.80 Small-Molecule Spectroscopy and Dynamics Fall 2008 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms. 5.80 Lecture
More informationLecture 9 Electronic Spectroscopy
Lecture 9 Electronic Spectroscopy Molecular Orbital Theory: A Review - LCAO approximaton & AO overlap - Variation Principle & Secular Determinant - Homonuclear Diatomic MOs - Energy Levels, Bond Order
More informationPericyclic Reactions
Pericyclic eactions Definition: 1. Concerted reaction that proceed via a cyclic transition state 2. No distinct intermediates in the reaction 3. Bond forming and bond breaking steps are simultaneous but
More informationEXPLAINING THE GEOMETRY OF SIMPLE MOLECULES USING MOLECULAR ORBITAL ENERGY-LEVEL DIAGRAMS BUILT BY USING SYMMETRY PRINCIPLES
Quim. Nova, Vol. XY, No. 00, 17, 200_ http://dx.doi.org/10.21577/01004042.20170198 EXPLAINING THE GEOMETRY OF SIMPLE MOLECULES USING MOLECULAR ORBITAL ENERGYLEVEL DIAGRAMS BUILT BY USING SYMMETRY PRINCIPLES
More informationMolecular Simulation I
Molecular Simulation I Quantum Chemistry Classical Mechanics E = Ψ H Ψ ΨΨ U = E bond +E angle +E torsion +E non-bond Jeffry D. Madura Department of Chemistry & Biochemistry Center for Computational Sciences
More informationMolecular Orbital Theory
Molecular Orbital Theory While FMO theory allows prediction of reactions (by thermodynamics, regio or stereochemistry), all predictions seen so far have been qualitative We have predicted that HOMO or
More informationSemi-Empirical Methods CHEM 430
Semi-Empirical Methods CHEM 430 Cost, Hartree%Fock, scales,as,n 4,(N=#, basis,funcfons), Due,to,two% electron, integrals, within,fock, matrix, Semi%empirical,cut, cost,by,reducing, number,of, integrals,
More informationQUANTUM CHEMISTRY FOR TRANSITION METALS
QUANTUM CHEMISTRY FOR TRANSITION METALS Outline I Introduction II Correlation Static correlation effects MC methods DFT III Relativity Generalities From 4 to 1 components Effective core potential Outline
More informationThis is called a singlet or spin singlet, because the so called multiplicity, or number of possible orientations of the total spin, which is
9. Open shell systems The derivation of Hartree-Fock equations (Chapter 7) was done for a special case of a closed shell systems. Closed shell means that each MO is occupied by two electrons with the opposite
More informationTuning Color Through Substitution
1 Tuning Color Through Substitution Introduction In this experiment, the effect of substituents on the absorbance spectra of molecules will be related to the structure of the molecular orbitals involved
More informationChapter 4 Symmetry and Chemical Bonding
Chapter 4 Symmetry and Chemical Bonding 4.1 Orbital Symmetries and Overlap 4.2 Valence Bond Theory and Hybrid Orbitals 4.3 Localized and Delocalized Molecular Orbitals 4.4 MX n Molecules with Pi-Bonding
More informationChapter 27 Pericyclic Reactions
Instructor Supplemental Solutions to Problems 2010 Roberts and Company Publishers Chapter 27 Pericyclic Reactions Solutions to In-Text Problems 27.1 (b) This is a sigmatropic reaction; two electrons are
More informationAustralian Journal of Basic and Applied Sciences
AENSI Journals Australian Journal of Basic and Applied Sciences ISSN:1991-8178 Journal home page: www.ajbasweb.com Theoretical Study for the Effect of Hydroxyl Radical on the Electronic Properties of Cyclobutadiene
More informationQUANTUM MECHANICS AND MOLECULAR STRUCTURE
6 QUANTUM MECHANICS AND MOLECULAR STRUCTURE 6.1 Quantum Picture of the Chemical Bond 6.2 Exact Molecular Orbital for the Simplest Molecule: H + 2 6.3 Molecular Orbital Theory and the Linear Combination
More informationChem 442 Review for Exam 2. Exact separation of the Hamiltonian of a hydrogenic atom into center-of-mass (3D) and relative (3D) components.
Chem 44 Review for Exam Hydrogenic atoms: The Coulomb energy between two point charges Ze and e: V r Ze r Exact separation of the Hamiltonian of a hydrogenic atom into center-of-mass (3D) and relative
More informationPAPER No. 7: Inorganic chemistry II MODULE No. 5: Molecular Orbital Theory
Subject Chemistry Paper No and Title Module No and Title Module Tag 7, Inorganic chemistry II 5, Molecular Orbital Theory CHE_P7_M5 TABLE OF CONTENTS 1. Learning Outcomes 2. Introduction to Ligand Field
More informationThe wavefunction that describes a bonding pair of electrons:
4.2. Molecular Properties from VB Theory a) Bonding and Bond distances The wavefunction that describes a bonding pair of electrons: Ψ b = a(h 1 ) + b(h 2 ) where h 1 and h 2 are HAOs on adjacent atoms
More informationPericyclic Reactions page 29
Pericyclic eactions page 29 4 ELECTIO ULE and OBITL YMMETY We are now familiar with the terminology of cycloadditions and the selection rules for 'symmetry allowed' and 'symmetry forbidden' reactions based
More informationChemistry Lecture Notes
Molecular orbital theory Valence bond theory gave us a qualitative picture of chemical bonding. Useful for predicting shapes of molecules, bond strengths, etc. It fails to describe some bonding situations
More informationChem 3502/4502 Physical Chemistry II (Quantum Mechanics) 3 Credits Spring Semester 2006 Christopher J. Cramer. Lecture 31, April 12, 2006
Chem 3502/4502 Physical Chemistry II (Quantum Mechanics) 3 Credits Spring Semester 2006 Christopher J. Cramer Lecture 31, April 12, 2006 (Some material in this lecture has been adapted from Cramer, C.
More informationGeneral Physical Chemistry II
General Physical Chemistry II Lecture 13 Aleksey Kocherzhenko October 16, 2014" Last time " The Hückel method" Ø Used to study π systems of conjugated molecules" Ø π orbitals are treated separately from
More informationl ; Y l,l-1, Y l,-1+1; etc., plus a single non-degenerate function Y l,0, in axial symmetry.
Chapter 6 Along "Reaction Paths", Orbitals Can be Connected One-to-One According to Their Symmetries and Energies. This is the Origin of the Woodward-offmann Rules I. Reduction in Symmetry As fragments
More informationwith the larger dimerization energy also exhibits the larger structural changes.
A7. Looking at the image and table provided below, it is apparent that the monomer and dimer are structurally almost identical. Although angular and dihedral data were not included, these data are also
More information1s atomic orbital 2s atomic orbital 2s atomic orbital (with node) 2px orbital 2py orbital 2pz orbital
Atomic Orbitals 1s atomic orbital 2s atomic orbital 2s atomic orbital (with node) 2px orbital 2py orbital 2pz orbital Valence Bond Theory and ybridized Atomic Orbitals Bonding in 2 1s 1s Atomic Orbital
More informationLecture 4 Model Answers to Problems
Self-Study Problems / Exam Preparation Construct and annotate a valence MO diagram for H 2 CN -. Use your diagram to explain why the neutral radical is more stable than the anion. (this is an old exam
More informationChapter 10. Structure Determines Properties! Molecular Geometry. Chemical Bonding II
Chapter 10 Chemical Bonding II Structure Determines Properties! Properties of molecular substances depend on the structure of the molecule The structure includes many factors, including: the skeletal arrangement
More informationLUMO + 1 LUMO. Tómas Arnar Guðmundsson Report 2 Reikniefnafræði G
Q1: Display all the MOs for N2 in your report and classify each one of them as bonding, antibonding or non-bonding, and say whether the symmetry of the orbital is σ or π. Sketch a molecular orbital diagram
More information4 Diatomic molecules
s manual for Burrows et.al. Chemistry 3 Third edition 4 Diatomic molecules Answers to worked examples WE 4.1 The Lewis model (on p. 174 in Chemistry 3 ) Use the Lewis model to describe the bonding in (a)
More informationCHAPTER 9 THEORY OF RESONANCE BY, G.DEEPA
CHAPTER 9 THEORY OF RESONANCE BY, G.DEEPA Conjugation in Alkadienes and Allylic Systems conjugation a series of overlapping p orbitals The Allyl Group allylic position is the next to a double bond 1 allyl
More informationChem Discussion #13 Chapter 10. Correlation diagrams for diatomic molecules. TF s name: Your name: Discussion Section:
Chem 101 2016 Discussion #13 Chapter 10. Correlation diagrams for diatomic molecules. TF s name: Your name: Discussion Section: 1. Below is a plot of the first 10 ionization energies for a single atom
More informationJack Simons, Henry Eyring Scientist and Professor Chemistry Department University of Utah
1. Born-Oppenheimer approx.- energy surfaces 2. Mean-field (Hartree-Fock) theory- orbitals 3. Pros and cons of HF- RHF, UHF 4. Beyond HF- why? 5. First, one usually does HF-how? 6. Basis sets and notations
More informationMO THEORY FOR CONJUGATED MOLECULES
22.2 MO TEORY FOR CONJUGATED MOLECULES 959 methyl groups have a cis orientation in the cyclobutene product. There is no obvious reason why conrotation should be preferred over disrotation in the thermal
More informationLecture B6 Molecular Orbital Theory. Sometimes it's good to be alone.
Lecture B6 Molecular Orbital Theory Sometimes it's good to be alone. Covalent Bond Theories 1. VSEPR (valence shell electron pair repulsion model). A set of empirical rules for predicting a molecular geometry
More informationChapter 13. Conjugated Unsaturated Systems. +,., - Allyl. What is a conjugated system? AllylicChlorination (High Temperature)
What is a conjugated system? Chapter 13 Conjugated Unsaturated Systems Conjugated unsaturated systems have a p orbital on a carbon adjacent to a double bond The p orbital may be empty (a carbocation The
More informationMolecular Orbitals for Ozone
Molecular Orbitals for Ozone Purpose: In this exercise you will do semi-empirical molecular orbital calculations on ozone with the goal of understanding the molecular orbital print out provided by Spartan
More informationTheoretical Chemistry - Level II - Practical Class Molecular Orbitals in Diatomics
Theoretical Chemistry - Level II - Practical Class Molecular Orbitals in Diatomics Problem 1 Draw molecular orbital diagrams for O 2 and O 2 +. E / ev dioxygen molecule, O 2 dioxygenyl cation, O 2 + 25
More informationand Ultraviolet Spectroscopy
Organic Chemistry, 7 th Edition L. G. Wade, Jr. Chapter 15 Conjugated Systems, Orbital Symmetry, and Ultraviolet Spectroscopy 2010, Prentice all Conjugated Systems Conjugated double bonds are separated
More informationPHYSICAL CHEMISTRY I. Chemical Bonds
PHYSICAL CHEMISTRY I Chemical Bonds Review The QM description of bonds is quite good Capable of correctly calculating bond energies and reaction enthalpies However it is quite complicated and sometime
More informationOn the Uniqueness of Molecular Orbitals and limitations of the MO-model.
On the Uniqueness of Molecular Orbitals and limitations of the MO-model. The purpose of these notes is to make clear that molecular orbitals are a particular way to represent many-electron wave functions.
More informationUNIT TWO BOOKLET 1. Molecular Orbitals and Hybridisation
DUNCANRIG SECONDARY ADVANCED HIGHER CHEMISTRY UNIT TWO BOOKLET 1 Molecular Orbitals and Hybridisation In the inorganic unit we learned about atomic orbitals and how they could be used to write the electron
More informationElectrocyclic and Cycloaddition Reactions
SPEIAL TOPI Electrocyclic and ycloaddition Reactions cis-tetramethylcyclobutene.1 INTRODUTION There are many reactions in which certain symmetry characteristics of molecular orbitals control the overall
More informationCHEM3023: Spins, Atoms and Molecules
CHEM3023: Spins, Atoms and Molecules Lecture 5 The Hartree-Fock method C.-K. Skylaris Learning outcomes Be able to use the variational principle in quantum calculations Be able to construct Fock operators
More informationLecture Notes Chem 51B S. King I. Conjugation
Lecture Notes Chem 51B S. King Chapter 16 Conjugation, Resonance, and Dienes I. Conjugation Conjugation occurs whenever p-orbitals can overlap on three or more adjacent atoms. Conjugated systems are more
More information2018 Ch112 problem set 6 Due: Thursday, Dec. 6th. Problem 1 (2 points)
Problem 1 (2 points) a. Consider the following V III complexes: V(H2O)6 3+, VF6 3-, and VCl6 3-. The table below contains the energies corresponding to the two lowest spin-allowed d-d transitions (υ1 and
More informationAndrew Rosen *Note: If you can rotate a molecule to have one isomer equal to another, they are both the same
*Note: If you can rotate a molecule to have one isomer equal to another, they are both the same *Note: For hybridization, if an SP 2 is made, there is one unhybridized p orbital (because p usually has
More informationRethinking Hybridization
Rethinking Hybridization For more than 60 years, one of the most used concepts to come out of the valence bond model developed by Pauling was that of hybrid orbitals. The ideas of hybridization seemed
More informationIntroduction to Electronic Structure Theory
CSC/PRACE Spring School in Computational Chemistry 2017 Introduction to Electronic Structure Theory Mikael Johansson http://www.iki.fi/~mpjohans Objective: To get familiarised with the, subjectively chosen,
More informationExcited States Calculations for Protonated PAHs
52 Chapter 3 Excited States Calculations for Protonated PAHs 3.1 Introduction Protonated PAHs are closed shell ions. Their electronic structure should therefore be similar to that of neutral PAHs, but
More information$ +! j. % i PERTURBATION THEORY AND SUBGROUPS (REVISED 11/15/08)
PERTURBATION THEORY AND SUBGROUPS REVISED 11/15/08) The use of groups and their subgroups is of much importance when perturbation theory is employed in understanding molecular orbital theory and spectroscopy
More informationPhysical Chemistry II Recommended Problems Chapter 12( 23)
Physical Chemistry II Recommended Problems Chapter 1( 3) Chapter 1(3) Problem. Overlap of two 1s orbitals recprobchap1.odt 1 Physical Chemistry II Recommended Problems, Chapter 1(3), continued Chapter
More informationSymmetry and Molecular Orbitals (I)
Symmetry and Molecular Orbitals (I) Simple Bonding Model http://chiuserv.ac.nctu.edu.tw/~htchiu/chemistry/fall-2005/chemical-bonds.htm Lewis Structures Octet Rule Resonance Formal Charge Oxidation Number
More information