Appendix D: Benthic Habitat Types
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1 Appendix D: Benthic Habitat Types Six assemblage types were identified in California bays and estuaries by Ranasinghe et al. (2008). The assemblage types correspond to physical habitat differences, which result in benthic species composition differences that can be used to verify habitat type membership. The six habitat types were: Southern California Marine Bays (Habitat C) Polyhaline San Francisco Bay (Habitat D) Shallow Wetlands and Coastal Bays (Habitat E) Very Coarse Saline Sediments (Habitat F) Mesohaline San Francisco Bay (Habitat G) Oligohaline and limnetic waters (Habitat H). The habitat type is determined by physical habitat characteristics and can be verified by species composition. The physical habitat criteria for inclusion in these habitats are presented in Table D1. The criteria vary slightly in different latitudinal segments, reflecting differences in exposure to freshwater inputs due to climatic differences. Within San Francisco Bay, freshwater and sediment grain size influences were integrated by geography. D - 1
2 Table D1. Criteria for determining habitat type Latitudinal Segment San Francisco Bay Latitude (37.4 to N) Central California (Latitude 34.5 to 37.4 N) Southern California (Latitude < 34.5 ) Northern California and Oregon (38.25 to 47.0 ) Puget Sound Latitude (> 47.0 N) Criteria and Habitat Inside San Francisco Bay: Red Rock Location: Habitat F Shallow wetland samples: Habitat E Dumbarton Bridge to Richmond-San Rafael Bridge: Habitat D N of Richmond-San Rafael Bridge or S of Dumbarton Bridge: Habitat G Outside San Francisco Bay: Habitat E Salinity < 7.5 psu: Habitat H : Habitat E Salinity < 10 psu : Habitat H Salinity psu: Habitat E Salinity > 27 psu: Habitat C Salinity < 5 psu: Habitat H : Habitat E Salinity < 5 psu: Habitat H Coastal Bays (Longitude > W): Habitat E Fines < 20: Habitat B Fines 41%: Habitat A Fines 20-<41% Depth < 75m: Habitat B Depth 75m: Habitat A D - 2
3 Table D2. Species characteristic of west coast bay and estuary habitats. Presented are exclusivity values for abundant (mean abundance>100 m -2 ) taxa with fidelity >50% or exclusivity >80% in each assemblage. omic nomenclature for provisional taxa (e.g., Cossura sp A) follows SCAMIT Edition 4 (Southern California Association of Marine Invertebrate omists 2001). Fidelity was calculated as the frequency of occurrence of a taxon in assemblage samples, expressed as a percentage. Exclusivity was the abundance of a taxon in assemblage samples, expressed as a percentage of its total abundance in all samples. Higher Euphilomedes product Arthropoda : Ostracoda 92 Eudorella pacifica Arthropoda : Cumacea 91 Axinopsida serricata Mollusca : Bivalvia 89 Protomedeia articulata Complex Arthropoda : Amphipoda 89 Protomedeia grandimana Arthropoda : Amphipoda 82 Amphiodia spp. Echinodermata : Ophiuroidea 73 Prionospio (Minuspio) lighti Annelida : Polychaeta 68 Levinsenia gracilis Annelida : Polychaeta 47 Ericthonius rubricornis Arthropoda : Amphipoda 100 Phyllochaetopterus prolific Annelida : Polychaeta 100 Ampelisca agassizi Arthropoda : Amphipoda 100 Alvania compacta Mollusca : Gastropoda 94 Tellina modesta Mollusca : Bivalvia 89 Rochefortia tumida Mollusca : Bivalvia 84 Aphelochaeta glandaria Complex Annelida : Polychaeta 81 Prionospio (Prionospio) dubia Annelida : Polychaeta 71 Nutricola lordi Mollusca : Bivalvia 63 Parvilucina tenuisculpta Mollusca : Bivalvia 55 Euphilomedes carcharodonta Arthropoda : Ostracoda Mediomastus spp. Annelida : Polychaeta Amphideutopus oculatus Arthropoda : Amphipoda 100 D - 3
4 Higher Caecum californicum Mollusca : Gastropoda 100 Cossura sp A Annelida : Polychaeta 100 Barleeia spp. Mollusca : Gastropoda 100 Synaptotanais notabilis Arthropoda : Tanaidacea 100 Scoletoma sp C Annelida : Polychaeta 100 Paracerceis sculpta Arthropoda : Isopoda 99 Prionospio (Prionospio) heterobranchia Annelida : Polychaeta 99 Fabricinuda limnicola Annelida : Polychaeta 99 Tagelus subteres Mollusca : Bivalvia 96 Pseudopolydora paucibranchiata Annelida : Polychaeta 89 Musculista senhousia Mollusca : Bivalvia 87 Theora lubrica Mollusca : Bivalvia 72 Pista percyi Annelida : Polychaeta 65 Leitoscoloplos pugettensis Annelida : Polychaeta 63 Euchone limnicola Annelida : Polychaeta 45 Exogone lourei Annelida : Polychaeta Crepidula convexa Mollusca : Gastropoda 100 Sabaco elongates Annelida : Polychaeta 99 Ampelisca abdita Arthropoda : Amphipoda 94 Caprella spp. Arthropoda : Amphipoda 94 Sinocorophium heteroceratum Arthropoda : Amphipoda 94 Molgula spp. Chordata : Ascidiacea 92 Photis brevipes Arthropoda : Amphipoda 90 Sphaerosyllis californiensis Annelida : Polychaeta 87 Monocorophium acherusicum Arthropoda : Amphipoda 84 Leptochelia dubia Arthropoda : Tanaidacea 72 Oligochaeta Annelida : Oligochaeta Americorophium stimpsoni Arthropoda : Amphipoda 100 Pygospio elegans Annelida : Polychaeta 99 Eogammarus confervicolus Complex Arthropoda : Amphipoda 99 Americorophium spinicorne Arthropoda : Amphipoda 98 D - 4
5 Higher Hobsonia florida Annelida : Polychaeta 97 Gnorimosphaeroma insulare Arthropoda : Isopoda 97 Potamopyrgus antipodarum Mollusca : Gastropoda 93 Cryptomya californica Mollusca : Bivalvia 91 Pseudopolydora kempi Annelida : Polychaeta 91 Neanthes limnicola Annelida : Polychaeta 87 Gnorimosphaeroma oregonense Arthropoda : Isopoda 83 Macoma balthica Mollusca : Bivalvia 82 Capitella capitata Complex Annelida : Polychaeta 82 Eohaustorius estuaries Arthropoda : Amphipoda 90 Corbula amurensis Mollusca : Bivalvia 99 Marenzelleria viridis Annelida : Polychaeta 98 Insecta Arthropoda : Insecta 99 Boccardiella ligerica Annelida : Polychaeta 93 Corbicula fluminea Mollusca : Bivalvia 92 Chironomidae Arthropoda : Chironomidae 86 Americorophium salmonis Arthropoda : Amphipoda 29 D - 5
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