Plant Genomes in a Changing Environment
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1 Plant Genomes in a Changing Environment October 2018 Wellcome Genome Campus, Hinxton, Cambridge, UK Conference Programme Wednesday, 24 October :30-13:50 Registration with Lunch 13:50-14:00 Welcome and Introductions Cristobal Uauy, 14:00-15:00 Keynote Lecture Adapting to different winters: non-coding transcripts and epigenetic switches at FLC Caroline Dean 15:00-15:50 Session 1: Structural Variation and Pan Genomes 15:00 Characterizing genetic and transcript variation using long single molecule sequencing Doreen Ware USDA and Cold Spring Harbor, USA 15:30 Pan-genome and network analyses of drought response in the model grass Brachypodium distachyon Bruno Contreras-Moreira EEAD-CSIC, Spain 15:50-16:20 Afternoon Tea 16:20-17:50 Session 1: Structural Variation and Pan Genomes Chair: Michele Morgante 16:20 Patterns of conservation and divergence in relative gene order of plant and animal genomes using network-based synteny analysis Eric Schranz Wageningen University, The Netherlands
2 16:50 The pan-genome of Brachypodium distachyon and its implications for polyploid genome evolution John Vogel University of California, Berkely, USA 17:20 Natural variation in telomere repeats, a major plant satellite DNA, correlates with flowering time variation Jae Young Choi New York University, USA 17:40 Characterisation of the pan-genome of Vitis vinifera using Next Generation Sequencing Gabriele Magris University of Udine, Italy 18:00-18:20 Lightning Talks 18:20-19:15 Poster Session 19:15 Dinner Thursday, 25 October :00-10:40 Session 2: Artificial Variation and Gene Editing 09:00 Controlled mobilization of transposable elements in plants: A tool for rapid crop breeding? Etienne Bucher INRA, France Engineering plant genomes: achieving and understanding genomic change Holger Puchta Karlsruhe Institute of Technology, Germany 10:00 Leveraging genomic resources to study wheat senescence Sophie Harrington 10:20-10:50 Morning Coffee 10:50-12:30 Session 3: Regulatory Variation and Systems Biology Chair: Sally Aitken 10:50 Molecular logic and emergent properties in receptor-receptor interaction networks Youssef Belkhadir GMI Vienna, Austria
3 12:30-14:00 Lunch 11:20 Finding drugs in the garden Anne Osbourn 11:50 Integrating GWAS, eqtl, and precision phenotyping to support the identification of candidate genes for maize leaf development Matteo Dell Acqua Scuola Superiore Sant'Anna, Italy 12:10 Regulatory divergence in wound-responsive gene expression between domesticated and wild tomato MingJung Liu Academia Sinica, Taiwan 14:00-15:00 Keynote Lecture Long, slow lives facing rapid change: Climate adaptation in conifers Sally Aitken University of British Columbia, Canada 15:00-16:00 Session 4: Natural Variation and Ancient Genomes 15:00 Reinforcing plant evolutionary genomics using ancient DNA Hernan Burbano MPI Tübingen, Germany 16:00-16:30 Afternoon Tea 15:30 A major QTL for grain weight in wheat is associated with increased grain length and cell size Jemima Brinton 16:30-18:15 Session 4: Natural Variation and Ancient Genomes 16:30 A novel mechanism underlies morphological diversity in plants Esther van der Knaap University of Georgia, USA 17:00 Natural variation of leaf secondary metabolites and underlying genetics in European white oaks Benjamin Brachi INRA, France 17:30 Plant genotype herbivore genotype interactions shape the genetic architecture of resistance to herbivory in Arabidopsis Andrew Gloss University of Chicago, USA
4 17:50 Short message service: the role of mirna signaling under drought stress in Brassica napus Sarah Schiessl Weidenweber Justus Liebig University Giessen, Germany 18:10 Convergent evolution of flower morphology after the transition to selfing in the genus Capsella Adrien Sicard SLU Uppsala, Sweden 18:30-19:15 Drinks Reception 19:15 Conference Dinner Friday, 26 October :00-10:40 Session 5: Epigenetic Variation Chair: Michele Morgante 09:00 Epigenetic regulation of transposable elements drives plant speciation Claudia Köhler Swedish University of Agricultural Sciences, Sweden 09:30 Chromatin regulation of heat stress memory in plants Isabel Bäurle University of Potsdam, Germany 10:00 Both climate of origin and breeding efforts influence DNA methylation in Barley Manu Dubin CNRS / Université de Lille, France Regulation of DNA methylation in Arabidopsis by folate metabolism Martin Groth Helmholtz Zentrum München, Germany 10:40-11:10 Morning Coffee 11:10-12:50 Session 6: Novel Technologies for Genome Analysis Chair: Doreen Ware 11:10 Ultra-long sequencing methods aid assembly of complex genomes Nick Loman University of Birmingham, UK 11:40 Visualization and manipulation of genomes in sexual reproduction Tetsuya Higashiyama Nagoya University, Japan
5 12:10 Developing fitness consequence maps for plant genomes Zoé Joly Lopez New York University, USA 12:30 Evolutionary genomics: the emergence of drought tolerance in plants Alexander Bowles University of Essex, UK 12:50 Closing remarks: Joy Bergelson, University of Chicago, USA 13:00-14:20 Lunch 14:30 Coaches depart to Cambridge City Centre and Train Station, Stansted Airport via Heathrow Airport
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