MINIREVIEW. How Does Bacillus thuringiensis Produce So Much Insecticidal Crystal Protein?

Size: px
Start display at page:

Download "MINIREVIEW. How Does Bacillus thuringiensis Produce So Much Insecticidal Crystal Protein?"

Transcription

1 JOURNAL OF BACTERIOLOGY, Nov. 1995, p Vol. 177, No /95/$ Copyright 1995, American Society for Microbiology MINIREVIEW How Does Bacillus thuringiensis Produce So Much Insecticidal Crystal Protein? HERVÉ AGAISSE AND DIDIER LERECLUS* Unité de Biochimie Microbienne, Centre National de la Recherche Scientifique URA 1300, Institut Pasteur, 25 rue du Docteur Roux, Paris cedex 15, France Members of the genus Bacillus are widely used as sources of industrial enzymes, fine biochemicals, antibiotics, and insecticides (for a review, see reference 27). One of these species, Bacillus thuringiensis, accounts for more than 90% of the biopesticides used today (for recent reviews on B. thuringiensis and its toxins, see references 6, 33, and 38). The entomopathogenic properties of this bacterium are due at least in part to the production of -endotoxins that make up the crystalline inclusions characteristic of B. thuringiensis strains. In 1989, Höfte and Whiteley proposed a classification for -endotoxins (30). They distinguished four major classes of -endotoxins (CryI, -II, -III and -IV) and cytolysins (Cyt), found in the crystals of the mosquitocidal strains, on the basis of their insecticidal and molecular properties. The -endotoxins belonging to each of these classes were grouped in subclasses (A, B, C... and a, b, c...) according to sequence. Generally, these proteins are toxic for lepidoptera (CryI), both lepidoptera and diptera (CryII), coleoptera (CryIII), and diptera (CryIV). These various insecticidal proteins are synthesized during the stationary phase and accumulate in the mother cell as a crystal inclusion which can account for up to 25% of the dry weight of the sporulated cells (Fig. 1). The amount of crystal protein produced by a B. thuringiensis culture in laboratory conditions (about 0.5 mg of protein per ml) and the size of the crystals (24) indicate that each cell has to synthesize 10 6 to endotoxin molecules during the stationary phase to form a crystal. This is a massive production of protein and presumably occupies a large proportion of the cell machinery. Nevertheless, sporulation and the associated physiological changes proceed in parallel with -endotoxin production. The aim of this minireview is to analyze the various mechanisms by which B. thuringiensis accumulates large quantities of toxins as biologically active protein crystals. TRANSCRIPTIONAL MECHANISMS Crystal formation involves accumulation of toxin proteins. One method of accumulating a protein is to express the corresponding gene from a strong promoter in a nondividing cell, thus avoiding protein dilution by cell division. This is indeed the case in B. thuringiensis, where Cry protein inclusions are formed in stationary-phase cultures. Bacillus strains have evolved at least two different pathways in response to nutrient stress: nondividing semiquiescent period and a developmental program of spore formation. It is * Corresponding author. Mailing address: Unité de Biochimie Microbienne, Institut Pasteur, 25 rue du Docteur Roux, Paris cedex 15, France. Phone: Fax: Electronic mail address: lereclus@pasteur.fr. therefore convenient to distinguish between stationary phase genes that are dependent on sporulation and those that are not. Sporulation-dependent cry genes. In Bacillus species, the endospore develops in a sporangium consisting of two cellular compartments known as the mother cell and the forespore. In B. subtilis, the development process is temporally regulated at the transcriptional level by the successive activation of six sigma factors which, by binding to RNA polymerase, determine which gene promoters are recognized (28). These factors are the primary sigma factor of vegetative cells, A, and five factors that are activated during development and are called H, F, E, G, and K in order of their appearance during sporulation (43). The A and H factors are active in the predivisional cell, E and K are active in the mother cell, and F and G are active in the forespore. The cryia gene, encoding toxins active against lepidoptera, is a typical example of a sporulation-dependent cry gene that is only expressed in the mother cell compartment of B. thuringiensis. Two overlapping transcription start sites have been mapped, defining two overlapping promoters (BtI and BtII) used sequentially (55). BtI is active between about t 2 and t 6 of sporulation, and BtII is active from about t 5 onwards (t n is n hours after the end of the exponential phase). In vitro experiments have shown that transcription from BtI is initiated by a form of RNA polymerase containing an alternative sigma factor, 35 (12), whereas transcription from BtII is initiated by a form of RNA polymerase containing another alternative sigma factor, 28 (13). The genes encoding 35 and 28 have been cloned and sequenced, and their deduced amino acid sequences show 88 and 85% identity with E and K of B. subtilis, respectively (1). E and K mutants of B. thuringiensis have been constructed, and the cryiaa promoter activity in such mutants was monitored with a cryiaa - lacz transcriptional fusion (10). The K mutant displayed lower -galactosidase activity (about 50%) than the wild-type strain, whereas -galactosidase synthesis was abolished in the E mutant. Thus, these two sigma factors are involved in cryiaa transcription in vivo. The -galactosidase activity due to a cryiaa - lacz fusion (about 15,000 Miller units on average during sporulation) in B. thuringiensis is very high, suggesting that the promoters involved in cryiaa expression are very strong (Fig. 2). From in vitro transcription experiments it appears that at least three other cry genes (cryib, cryiia, and cyta) contain either BtI alone or both BtI and BtII (12). Consensus sequences for promoters recognized by B. thuringiensis RNA polymerase containing sporulation-specific sigma factor have been deduced from alignment of the promoter regions of these genes (Table 1). Many other cry genes (e.g., cryiva, cryivb, 6027

2 6028 MINIREVIEW J. BACTERIOL. FIG. 1. Electron micrograph of B. thuringiensis subsp. thuringiensis berliner 1715 during sporulation. The dark parasporal inclusion is the insecticidal crystal. and cryivd genes from subsp. israelensis, and cry34 and cry40 genes from subsp. thompsoni) are considered to be sporulation-stage-specific genes because their promoter regions contain these consensus sequences (11, 20, 58, 59). However, there has been neither in vitro transcription analysis nor comprehensive genetic analysis in E and K mutants of B. thuringiensis. Non-sporulation-dependent cry genes. The cryiiia gene, found in the coleopteran-active B. thuringiensis subsp. tenebrionis (49), is a typical example of a non-sporulation-dependent cry gene. Analysis with transcriptional fusions to the lacz reporter gene indicates that the kinetics of cryiiia and cryiaa expression are different (Fig. 2). The cryiiia promoter is weakly but significantly expressed during the vegetative phase of growth (unlike the cryiaa promoters), is activated at the end of exponential growth, and remains active only until about t 8 in sporulation medium. Maximum expression from the cryiiia promoter is very high as assessed from the -galactosidase activity obtained (15,000 Miller units during stationary phase). Unlike BtI and BtII, the cryiiia promoter is similar to promoters recognized by the primary sigma factor of vegetative cells, A (see Table 1 and reference 5). The expression of cryiiia is not dependent on sporulation-specific sigma factors either in B. subtilis (4) or in B. thuringiensis (48). Moreover, cryiiia expression is increased and prolonged in mutant strains which are unable to initiate sporulation (e.g., spo0f [41] or spo0a [4, 36, 48]). Thus, cryiiia activation is not regulated by the genes regulating sporulation initiation but rather by some regulator(s) affecting gene expression during the transition from exponential growth to the stationary phase. Furthermore, kinetic studies with cryiiia - lacz fusions suggest that in both B. subtilis and B. thuringiensis there is an event during sporulation which turns off cryiiia expression (see references 4 and 48 and Fig. 2). Two types of regulators acting on gene expression during stationary phase have been identified in B. subtilis (51). One type actively prevents gene expression during vegetative growth. The effects of these repressors are abolished at the onset of stationary phase (e.g., AbrB, Hpr, Sin, Pai proteins, etc.). The second type of regulator activates expression of previously silent genes (e.g., Deg proteins, ComP/ComA, SenS, Ten proteins, etc.). To date, the gene involved in cryiiia regulation has not been identified. TABLE 1. Nucleotide sequence of the cry gene promoters Promoter 35 region Spacer 10 region Reference FIG. 2. -Galactosidase activities of B. thuringiensis strains carrying the cryiaa - lacz and the cryiiia - lacz fusions. B. thuringiensis cells were grown in SP medium at 30 C. Time zero (t 0 ) indicates the onset of the stationary phase. t n is the number of hours before ( ) or after time zero. Consensus E GCATNT N 14 or 15 CATANNNT 12 (B. thuringiensis) cryia(a) BtI GCATTT N 15 CATATGTTT 12 Consensus K ND a ND TNATANNNTG 13 (B. thuringiensis) cryia(a) BtII ND ND TCATAAGATG 13 Consensus A TTGACA N 17 or 18 TATAAT 44 (B. subtilis) cryiiia TTGCAA N 18 TAAGCT 5 a ND, not determined.

3 VOL. 177, 1995 MINIREVIEW 6029 THE cry GENE COPY NUMBER The expression level of a gene may be influenced by its copy number, and gene amplification has frequently been used to overproduce proteins of industrial interest. The cry genes are located on plasmids, and many B. thuringiensis strains carry different cry genes (for a review, see reference 38). This natural amplification of the cry genes might therefore contribute to the high production of toxins in the different B. thuringiensis strains. However, B. thuringiensis strains which harbor a single cryi gene (e.g., subsp. kurstaki HD73) synthesize bipyramidal crystals which are not significantly smaller than those produced by strains harboring three or four different cryi genes (e.g., subsp. kurstaki HD1 or subsp. aizawai 7.29). Thus, assuming that the copy numbers of the large plasmids carrying the cry genes are similar in these B. thuringiensis strains, it appears that the production of toxins in B. thuringiensis is not strictly proportional to the copy number of the cry genes. This suggests that the capacity of the B. thuringiensis strains to produce the crystal proteins is limited (although at a high level) and reaches a maximum at a certain number of cry gene copies in the cell, above which there is no further increase in synthesis. Various experimental data support this idea. When a cryiac gene is cloned in a strain harboring other cryi genes, significantly less CryIAc protein is produced than when it is cloned into an acrystalliferous strain of B. thuringiensis (7). However, the reduced expression of cryia genes is not observed when they are introduced into a strain harboring a cryiiia gene (35, 39). The expression of these two genes is summed, presumably because they do not share rate-limiting elements of the expression systems. These effects may arise from titration of the specific sigma factors recruited for cry gene transcription and are consistent with saturation of cry gene expression being primarily at a transcriptional level. In agreement with this hypothesis, cloning cry genes in Bacillus species by using high-copy-number plasmids frequently disturbs the physiological equilibrium of the cells and prevents their sporulation (21, 22). mrna STABILITY The rate of mrna degradation has substantial consequences on gene expression. An important element in maximizing gene expression is the production of stable mrna. It is obviously expected that highly expressed proteins are encoded by stable mrnas. For example, ompa mrna, which encodes the major Escherichia coli outer membrane protein, displays an unusually long half-life (i.e., 20 min versus 2 to 3 min on average for E. coli mrnas) (45). Therefore, it is likely that the high level of -endotoxin production is due in part to the mrnas being stable. Glatron and Rapoport demonstrated that the mrnas encoding the crystal protein are among the relatively long-lived mrnas present in B. thuringiensis during the stationary phase and have an average half-life of 10 min (26). Studies of the degradation of unusually stable mrnas both in E. coli and in B. subtilis have led to the identification of a number of cis-elements that act as mrna stabilizers. These determinants of mrna stability are generally part of untranslated regions and are classified into two groups, according to their location in the mrna: (i) 3 terminal structures and (ii) 5 mrna stabilizers. Both of these types of determinant have been found in cry gene mrnas. 3 terminal structures. Wong and Chang first showed that the 3 terminal fragment of the cryiaa gene from B. thuringiensis subsp. kurstaki HD1 acts as a positive retroregulator (54). The fusion of this fragment with the 3 end of heterologous genes increases the half-life of their transcripts and consequently their expression level. Deletion analysis of this fragment showed that the region conferring the enhancing activity coincided with the potential transcriptional terminator sequence. This region harbors inverted repeat sequences with the potential to form stable stem-loop structures. 3-5 exoribonucleases are sensitive to RNA secondary structure. In particular, their processive activities are impeded by 3 stem-loop structures (for a review, see reference 29). Therefore, it is likely that the cry terminator is involved in mrna stability by protecting the cry mrna from exonucleolytic degradation from the 3 end. However, the involvement of the terminator in cryia mrna stability has not been analyzed by deleting this structure from the corresponding gene and it has therefore not been demonstrated that the 3 stem-loop structure is important for cryia gene expression. It is increasingly apparent that, for the majority of messages, the 3 stem-loop structure blocks exonuclease digestion for a sufficiently long time that degradation is initiated by upstream endonucleolytic cleavage. Therefore, the stability of cryia gene mrna may also be due to the absence of internal endonuclease cleavage sites. The putative terminator sequences downstream from various cry genes are widely conserved. Recently, a stem-loop binding protein that impedes the progress of the E. coli exoribonuclease PNPase in vitro has been identified (15). Thus, the binding of an additional factor to the 3 stem-loop structure of the cry mrna may be involved in the stabilizing effect of this region. However, whether such a mechanism exists in B. thuringiensis remains to be established. 5 mrna stabilizer. The promoter region of the cryiiia gene is complex: full expression requires the presence of a large DNA region extending up to 600 bp upstream of the translational start site (5, 19). Structural and functional analysis using transcriptional fusions to the lacz reporter gene has revealed that two distinct regions are involved in cryiiia expression (Fig. 3A). The upstream region is involved in transcription and harbors the cryiiia promoter sensu stricto. The downstream region is involved in cryiiia expression at a posttranscriptional level. This region is responsible for the accumulation of cryiiia mrna as a relatively stable transcript with a5 extremity corresponding to nucleotide position 129 (with reference to the translational start codon of cryiiia). Fusion of this region to the 5 region of the lacz gene transcribed from a promoter inducible in B. subtilis increases the stability of the lacz fusion mrna and results in a 10-fold increase of both mrna steady-state level and -galactosidase synthesis (3). In conferring stability to a heterologous sequence to which it is fused (e.g., the lacz gene), the downstream region has all the characteristics of a 5 mrna stabilizer (8). The determinant of stability appears to be a consensus Shine-Dalgarno (SD) sequence present close to the 5 extremity of the cryiiia mrna (Fig. 3B). This SD sequence does not direct translation initiation. However, analysis of mutations introduced into this region strongly suggests that the SD sequence is involved in stability through interaction with the 3 end of 16S rrna. Therefore, the binding of a 30S ribosomal subunit to the SD sequence located in the 5 untranslated region of cryiiia may stabilize the corresponding transcript. It is noteworthy that such SD sequences are also present in similar positions in at least two other members of the cryiii gene family, cryiiib and cryiiib2 (Fig. 3B), suggesting that the corresponding transcripts are probably stabilized by a similar mechanism. Recently, it has been shown that a segment of early RNA from B. subtilis bacteriophage SP82 could act as a

4 6030 MINIREVIEW J. BACTERIOL. FIG. 3. The cryiiia promoter region. (A) Model for cryiiia gene expression. Transcription of cryiiia is initiated at nucleotide position 558, giving the transcript T-558. This transcript is processed to give a stable form (T-129) which accumulates in the cells and appears as the major cryiiia mrna (5). (B) The 5 stabilizer downstream region. The DNA region downstream from nucleotide position 129 of three cryiii genes is indicated. The nucleotide sequences matching with the 3 end of the B. subtilis 16S rrna are boxed. Asterisks (nucleotide positions 129 and 128) represent the 5 ends of the major cryiii transcripts as previously described (5, 23). 5 mrna stabilizer (31). Similarly, the determinant of stability appears to be a polypurine sequence that resembles a ribosome binding site. Therefore, SD sequence may be a general determinant of mrna stability in Bacillus species. CRYSTALLIZATION OF THE INSECTICIDAL PROTEINS The obtention of high concentrations of proteins requires production of stable proteins. The biological context in which B. thuringiensis has to resolve this problem is that Bacillus species produce large amounts of a variety of proteolytic enzymes, especially during the stationary phase, and B. thuringiensis does not escape this generic characteristic. The bacterium must therefore have mechanisms to prevent premature proteolysis of the toxins. The proteolytic degradation of proteins is a common problem for the bioprocessing industry, and biotechnology currently uses several approaches to minimize this effect: secretion, utilization of proteolysis inhibitors or mutant strains with a reduced protease activity, construction of protein fusions for inclusion body formation, etc. (for a review, see reference 25). According to the environmental and biological constraints to which B. thuringiensis is naturally subjected (e.g., the necessity of proteases for its nutrient requirements), most of these strategies are excluded. The bioprocess used by B. thuringiensis is the formation of protease-resistant inclusion bodies. However, these protein inclusions have to be easily solubilized in the gut of insect larvae if they are to be toxic. The formation of the crystal structure and its solubility characteristics presumably depend on a variety of factors, including the secondary structure of the Cry proteins, the energy of the disulfide bonds, and the presence of additional components. Expression of several cryi genes in E. coli and B. subtilis leads to the synthesis of biologically active inclusions (14, 16, 46, 50), suggesting that the 130- to 140-kDa CryI proteins can spontaneously form crystals independent of the host bacterium. These results appear to agree with the principle of protein self-assembly, as first suggested by Lecadet s observation (34) that bipyramidal crystals denatured in 8 M urea reverted to their original shape when the urea was removed by dialysis. However, Du et al. (24) have recently shown that, after denaturation in 8 M urea and recrystallization, the bipyramidal crystals become soluble only at ph values of 12, instead of the ph 10 for the untreated protein. This loss of solubility correlated with a loss of toxicity. Thus, particular physicochemical conditions in the bacterial cells (E. coli, B. subtilis, or B. thuringiensis) are required to ensure correct assembly of the CryI molecules to form a soluble and active inclusion. Since the C-terminal regions of CryI, CryIVA, and CryIVB proteins are structurally similar (30, 37), their crystallization is presumably also similar. Indeed, the C-terminal halves of these molecules are cysteine rich and are not involved in toxicity. It is generally assumed that these regions contribute to the stability of the crystals through the formation of disulfide bonds. The crystallization of the 73-kDa CryIIIA protein may be slightly different: this protein forms a flat rectangular crystal inclusion in both B. subtilis and B. thuringiensis (4), but crystals generated by recrystallization from NaBr solutions and dialysis remain soluble and active against coleopteran larvae (9). The difference between the solubility characteristics of CryI and CryIIIA crystals is probably due to the absence of the cysteinerich C-terminal region from the CryIIIA protoxins. The CryIIIA crystals are composed of polypeptides which appear not to be linked by disulfide bridges (9). Analysis of the threedimensional structure of the CryIIIA protein suggests that four intermolecular salt bridges might be implicated in the formation of the crystal inclusion (40). There is various evidence for crystallization of CryIIA (71 kda), Cry IVD (72 kda), and CytA (27 kda) proteins proceeding via a different process which requires the presence of accessory proteins. The genes encoding CryIVD and CryIIA toxins are organized in an operon and are cotranscribed with genes not involved in toxicity; the gene cyta is transcribed divergently to cryivd (Fig. 4). Helen Whiteley s group has shown that a 20-kDa protein (P20 in Fig. 4) is required for stabilization of CytA and CryIVD in E. coli (2, 42, 52). The 20-kDa protein forms a complex with CytA which may act as a scaffold to facilitate (or stabilize) assembly of CytA into protease-resistant oligomers. This hypothesis is supported by the observation that the 20-kDa protein is not required for highlevel CytA production in E. coli strains carrying mutations which affect their proteolytic activity (52). Moreover, the 20- kda protein is found in the CytA crystals in B. thuringiensis, although not in stochiometric amounts with respect to CytA (2). The role of the 20-kDa protein in CytA and CryIVD crystallization in B. thuringiensis is less clear. The results of three studies disagree on the importance of its role (17, 56, 57).

5 VOL. 177, 1995 MINIREVIEW 6031 FIG. 4. Structural organization of the cryiia, cryivd, and cyta genes. The genes encoding CytA, CryIVD, P19, and P20 proteins are indicated as described by Adams et al. (2) and Dervyn et al. (20). The genes encoding ORF1, ORF2, and CryIIA are indicated as previously described by Widner and Whiteley (53). Arrows represent the transcripts and the direction of transcription. However, the discrepancy between these results could arise from the presence or absence of the P19 protein, which may also be involved in crystallization but which was not considered in these studies. The gene encoding P19 was recently mapped upstream of cryivd (Fig. 4; 20) and might be involved in the crystallization process of CytA and CryIVD. It slightly increases the synthesis of CryIVD in a B. subtilis wild-type strain, whereas it has no effect in a protease-deficient B. subtilis mutant strain (47). P19 is very similar to ORF1 (33% identity) encoded by the first gene of the cryiia operon (Fig. 4; 53). However, ORF1 has no detectable effect on the synthesis of CryIIA in B. thuringiensis (18). The protein which is involved in the efficient expression and presumably in the crystallization of CryIIA is the orf2 gene product (18), which was previously found as a component of the CryIIA crystals (53). These studies implicate a variety of accessory proteins (P19, P20, ORF1, and ORF2) in the synthesis or in the stabilization of the crystal proteins. According to the literal sense of the word, these proteins could be designated chaperones; however, they do not fit the current scientific usage of the term. Their designation as helper proteins (32), or more precisely as crystallization proteins (Crz proteins) may be thus more appropriate. CONCLUDING REMARKS B. thuringiensis produces a large variety of insecticidal crystal proteins, which reflects its remarkable adaptative capacity to settle in the large ecological niche constituted by insects. The biological mechanisms used by the bacterium to make enough toxin to kill insects are a striking example of bacterial evolution. From the plasmid localization of cry genes to the involvement of accessory proteins in the crystallization process, B. thuringiensis has developed a number of sophisticated systems entirely devoted to massive production of the toxins in the mother cell compartment during the stationary phase. The reason for the variety of toxins appears evident: expansion of the host spectrum. The reason for the maintenance of various different expression systems, rather than a single, powerful one, is less clear. It would be interesting to examine this question in the context of the ecology of the bacterium by considering its growth and the expression of a given cry gene in various environmental conditions, including the gut of its potential target insects. It is tempting to speculate that the gut environment of a given insect species might be favorable to one expression system rather than another (i.e., sporulation dependent versus sporulation independent). Similarly, the crystallization characteristics of a toxin appear to correlate with its insecticidal activity spectrum. An example is the CryIII toxin active against coleopteran larvae. CryIII lacks the C-terminal segment found in other Cry proteins. This causes the CryIIIbased crystals to be soluble in the acidic guts of the coleopteran larvae. Crystal proteins (as CryI, CryIVA, and CryIVB) that contain this C-terminal region are solubilized only at a high ph, which is characteristic of the lepidopteran and dipteran gut environment. Whatever the biological significance of their differences, the various expression systems of the cry genes provide a series of models to study genetic expression during the stationary phase of gram-positive sporulating bacteria. Further studies of the cry gene transcripts will undoubtedly lead to an understanding of the structural and functional basis of mrna stability in Bacillus species. This has large biotechnological implications. Indeed, the transcriptional and posttranscriptional mechanisms described in this review could be used to overproduce proteins of industrial interest. A better knowledge of the crystallization process used by B. thuringiensis might also provide information allowing heterologous proteins to be stabilized as biologically active crystal inclusions. ACKNOWLEDGMENTS We thank A. Bravo, E. Dervyn, S. Poncet, and S. Salamitou for sharing information prior to publication and J. Ribier for kindly providing the electron micrograph. We are grateful to A. Edelman for English corrections. H.A. was supported by a grant from Roussel-Uclaf. D.L. was supported by the Institut National de la Recherche Agronomique. REFERENCES 1. Adams, L. F., K. L. Brown, and H. R. Whiteley Molecular cloning and characterization of two genes encoding sigma factors that direct transcription from a Bacillus thuringiensis crystal protein gene promoter. J. Bacteriol. 173: Adams, L. F., J. E. Visick, and H. R. Whiteley A 20-kilodalton protein is required for efficient production of the Bacillus thuringiensis subsp. israelensis 27-kilodalton crystal protein in Escherichia coli. J. Bacteriol. 171: Agaisse, H., and D. Lereclus. Unpublished data. 4. Agaisse, H., and D. Lereclus Expression in Bacillus subtilis of the Bacillus thuringiensis cryiiia toxin gene is not dependent on a sporulationspecific sigma factor and is increased in a spo0a mutant. J. Bacteriol. 176: Agaisse, H., and D. Lereclus Structural and functional analysis of the promoter region involved in full expression of the cryiiia toxin gene of Bacillus thuringiensis. Mol. Microbiol. 13: Aronson, A. I The two faces of Bacillus thuringiensis: insecticidal proteins and post-exponential survival. Mol. Microbiol. 7: Baum, J. A., D. M. Coyle, M. P. Gilbert, C. S. Jany, and C. Gawron-Burke Novel cloning vectors for Bacillus thuringiensis. Appl. Environ. Microbiol. 56: Bechhoffer, D. H mrna stabilizers, p In J. G. Belasco and G. Brawerman (ed.), Control of messenger RNA stability, Academic Press, Inc., San Diego, Calif. 9. Bernhard, K Studies on the delta-endotoxin of Bacillus thuringiensis var. tenebrionis. FEMS Microbiol. Lett. 33: Bravo, A., and D. Lereclus. Unpublished data. 11. Brown, K. L Transcriptional regulation of the Bacillus thuringiensis subsp. thompsoni crystal protein gene operon. J. Bacteriol. 175: Brown, K. L., and H. R. Whiteley Isolation of a Bacillus thuringiensis RNA polymerase capable of transcribing crystal protein genes. Proc. Natl. Acad. Sci. USA 85: Brown, K. L., and H. R. Whiteley Isolation of the second Bacillus thuringiensis RNA polymerase that transcribes from a crystal protein gene promoter. J. Bacteriol. 172: Calogero, S., A. M. Albertini, C. Fogher, R. Marzari, and A. Galizzi Expression of a cloned Bacillus thuringiensis delta-endotoxin gene in Bacillus subtilis. Appl. Environ. Microbiol. 55: Causton, H. C., B. Py, R. S. McLaren, and C. H. Higgins mrna degradation in Escherichia coli: a novel factor which impedes the exoribonucleolytic activity of PNPase at stem-loop structures. Mol. Microbiol. 14: Chak, K.-F., and D. J. Ellar Cloning and expression in Escherichia coli of an insecticidal crystal protein gene from Bacillus thuringiensis var. aizawai HD-133. J. Gen. Microbiol. 133: Chang, C., Y.-M. Yu, S.-M. Dai, S. K. Law, and S. S. Gill High-level cryivd and cyta gene expression in Bacillus thuringiensis does not require the 20-kilodalton protein, and the coexpressed gene products are synergistic in their toxicity to mosquitoes. Appl. Environ. Microbiol. 59:

6 6032 MINIREVIEW J. BACTERIOL. 18. Crickmore, N., and D. J. Ellar Involvement of a possible chaperonin in the efficient expression of a cloned CryIIA -endotoxin gene in Bacillus thuringiensis. Mol. Microbiol. 6: De Souza, M. T., M.-M. Lecadet, and D. Lereclus Full expression of the cryiiia toxin gene of Bacillus thuringiensis requires a distant upstream DNA sequence affecting transcription. J. Bacteriol. 175: Dervyn, E., S. Poncet, A. Klier, and G. Rapoport Transcriptional regulation of the cryivd gene operon from Bacillus thuringiensis subsp. israelensis. J. Bacteriol. 177: Donovan, W. P., C. Dankocsik, and M. P. Gilbert Molecular characterization of a gene encoding a 72-kilodalton mosquito-toxic crystal protein from Bacillus thuringiensis subsp. israelensis. J. Bacteriol. 170: Donovan, W. P., J. M. González, Jr., M. P. Gilbert, and C. Dankocsik Isolation and characterisation of EG2158, a new strain of Bacillus thuringiensis toxic to coleopteran larvae, and nucleotide sequence of the toxin gene. Mol. Gen. Genet. 214: Donovan, W. P., M. J. Rupar, A. C. Slaney, T. Malvar, M. C. Gawron-Burke, and T. B. Johnson Characterization of two genes encoding Bacillus thuringiensis insecticidal crystal proteins toxic to coleoptera species. Appl. Environ. Microbiol. 58: Du, C., P. A. W. Martin, and K. W. Nickerson Comparison of disulfide contents and solubility at alkaline ph of insecticidal and noninsecticidal Bacillus thuringiensis protein crystals. Appl. Environ. Microbiol. 60: Enfors, S.-O Control of in vivo proteolysis in the production of recombinant proteins. Trends Biotechnol. 10: Glatron, M. F., and G. Rapoport Biosynthesis of the parasporal inclusion of Bacillus thuringiensis: half-life of its corresponding messenger RNA. Biochimie 54: Harwood, C. R Bacillus subtilis and its relatives: molecular biological and industrial workhorses. Trends Biotechnol. 10: Helmann, J. D., and M. J. Chamberlin Structure and function of bacterial sigma factors. Annu. Rev. Biochem. 57: Higgins, C. F., H. C. Causton, G. S. C. Dance, and E. A. Mudd The role of the 3 end in mrna stability and decay, p In J. G. Belasco and G. Brawerman (ed.), Control of messenger RNA stability. Academic Press, Inc., San Diego, Calif. 30. Höfte, H., and H. R. Whiteley Insecticidal crystal proteins of Bacillus thuringiensis. Microbiol. Rev. 53: Hue, K. K., S. D. Cohen, and D. H. Bechhofer A polypurine sequence that acts as a 5 mrna stabilizer in Bacillus subtilis. J. Bacteriol. 177: Koni, P. A., and D. J. Ellar Cloning and characterization of a novel Bacillus thuringiensis cytolytic delta-endotoxin. J. Mol. Biol. 229: Lambert, B., and M. Peferoen Insecticidal promise of Bacillus thuringiensis. BioScience 42: Lecadet, M.-M Action comparée de l urée et du thioglycolate sur la toxine figurée de Bacillus thuringiensis. C. R. Acad. Sci. Ser. D 264: Lecadet, M.-M., J. Chaufaux, J. Ribier, and D. Lereclus Construction of novel Bacillus thuringiensis strains with different insecticidal specificities by transduction and by transformation. Appl. Environ. Microbiol. 58: Lereclus, D., H. Agaisse, M. Gominet, and J. Chaufaux Overproduction of encapsulated insecticidal crystal proteins in a Bacillus thuringiensis spo0a mutant. Bio/Technology 13: Lereclus, D., C. Bourgouin, M.-M. Lecadet, A. Klier, and G. Rapoport Role, structure, and molecular organization of the genes coding for the parasporal -endotoxins of Bacillus thuringiensis, p In I. Smith, R. A. Slepecky, and P. Setlow (ed.), Regulation of procaryotic development. American Society for Microbiology, Washington, D.C. 38. Lereclus, D., A. Delécluse, and M.-M. Lecadet Diversity of Bacillus thuringiensis toxins and genes, p In P. Entwistle, J. S. Cory, M. J. Bailey, and S. Higgs (ed.), Bacillus thuringiensis, an environmental biopesticide: theory and practice, John Wiley & Sons, Ltd., Chichester, U.K. 39. Lereclus, D., M. Vallade, J. Chaufaux, O. Arantes, and S. Rambaud Expansion of insecticidal host range of Bacillus thuringiensis by in vivo genetic recombination. Bio/Technology 10: Li, J., J. Carroll, and D. J. Ellar Crystal structure of insecticidal -endotoxin from Bacillus thuringiensis at 2.5 Å resolution. Nature (London) 353: Malvar, T., and J. Baum Tn5401 disruption of the spo0f gene, identified by direct chromosomal sequencing, results in cryiiia overproduction in Bacillus thuringiensis. J. Bacteriol. 176: McLean, K. M., and H. R. Whiteley Expression in Escherichia coli of a cloned crystal protein gene of Bacillus thuringiensis subsp. israelensis. J. Bacteriol. 169: Moran, C. P RNA polymerase and transcription factors, p In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and other gram-positive bacteria. American Society for Microbiology, Washington, D.C. 44. Moran, C. P., N. Lang, S. F. J. Legrice, G. Lee, M. Stephens, A. L. Sonnenshein, J. Pero, and R. Losick Nucleotide sequences that signal the initiation of transcription and translation in Bacillus subtilis. Mol. Gen. Genet. 186: Nilsson, G., J. G. Belasco, S. N. Cohen, and A. von Gabain Growth rate dependent regulation of mrna stability in E. coli. Nature (London) 312: Oeda, K., K. Oshie, M. Shimizu, K. Nakamura, H. Yamamoto, I. Nakayama, and H. Ohkawa Nucleotide sequence of the insecticidal protein gene of Bacillus thuringiensis strain aizawai IPL-7 and its high-level expression in Escherichia coli. Gene 53: Poncet, S Ph.D. thesis. Université Paris VII. 48. Salamitou, S., H. Agaisse, A. Bravo, and D. Lereclus. Unpublished data. 49. Sekar, V., D. V. Thompson, M. J. Maroney, R. G. Bookland, and M. J. Adang Molecular cloning and characterization of the insecticidal crystal protein gene of Bacillus thuringiensis var. tenebrionis. Proc. Natl. Acad. Sci. USA 84: Shivakumar, A. G., G. J. Gundling, T. A. Benson, D. Casuto, M. F. Miller, and B. B. Spear Vegetative expression of the -endotoxin genes of Bacillus thuringiensis subsp. kurstaki in Bacillus subtilis. J. Bacteriol. 166: Smith, I Regulatory proteins that control late-growth development, p In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and other gram-positive bacteria. American Society for Microbiology, Washington, D.C. 52. Visick, J. E., and H. R. Whiteley Effect of a 20-kilodalton protein from Bacillus thuringiensis subsp. israelensis on production of the CytA protein by Escherichia coli. J. Bacteriol. 173: Widner, W. R., and H. R. Whiteley Two highly related insecticidal crystal proteins of Bacillus thuringiensis subsp. kurstaki possess different host range specificities. J. Bacteriol. 171: Wong, H. C., and S. Chang Identification of a positive retroregulator that stabilizes mrnas in bacteria. Proc. Natl. Acad. Sci. USA 83: Wong, H. C., H. E. Schnepf, and H. R. Whiteley Transcriptional and translational start sites for the Bacillus thuringiensis crystal protein gene. J. Biol. Chem. 258: Wu, D., and B. A. Federici A 20-kilodalton protein preserves cell viability and promotes CytA crystal formation during sporulation in Bacillus thuringiensis. J. Bacteriol. 175: Wu, D., and B. A. Federici Improved production of the insecticidal CryIVD protein in Bacillus thuringiensis using cryia(c) promoters to express the gene for an associated 20-kDa protein. Appl. Microbiol. Biotechnol. 42: Yoshisue, H., T. Fukada, K.-I. Yoshida, K. Sen, S.-I. Kurosawa, H. Sakai, and T. Komano Transcriptional regulation of Bacillus thuringiensis subsp. israelensis mosquito larvicidal crystal protein gene cryiva. J. Bacteriol. 175: Yoshisue, H., T. Nishimoto, and T. Komano Identification of a promoter for the crystal protein-encoding gene cryivb from Bacillus thuringiensis subsp. israelensis. Gene 137:

thuningiensis subsp. israelensis

thuningiensis subsp. israelensis APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Nov. 1993, P. 3922-3927 99-224/93/113922-6$2./ Copyright ) 1993, American Society for Microbiology Vol. 59, No. 11 Epression of cryiva and cryivb Genes, Independently

More information

Bacillus thuringiensis

Bacillus thuringiensis JOURNAL OF BACTERIOLOGY, Aug. 1993, p. 5276-5280 0021-9193/93/165276-05$02.00/0 Copyright 1993, American Society for Microbiology Vol. 175, No. 16 A 20-Kilodalton Protein Preserves Cell Viability and Promotes

More information

Expression in Bacillus subtilis of the Bacillus thuringiensis cryiil4 Toxin Gene Is Not Dependent on a Sporulation-Specific Sigma

Expression in Bacillus subtilis of the Bacillus thuringiensis cryiil4 Toxin Gene Is Not Dependent on a Sporulation-Specific Sigma JOURNAL OF BACrERIOLOGY, Aug. 1994, p. 4734-4741 0021-9193/94/$04.00+0 Copyright C) 1994, American Society for Microbiology Vol. 176, No. 15 Expression in Bacillus subtilis of the Bacillus thuringiensis

More information

Introduction. Gene expression is the combined process of :

Introduction. Gene expression is the combined process of : 1 To know and explain: Regulation of Bacterial Gene Expression Constitutive ( house keeping) vs. Controllable genes OPERON structure and its role in gene regulation Regulation of Eukaryotic Gene Expression

More information

Chapter 16 Lecture. Concepts Of Genetics. Tenth Edition. Regulation of Gene Expression in Prokaryotes

Chapter 16 Lecture. Concepts Of Genetics. Tenth Edition. Regulation of Gene Expression in Prokaryotes Chapter 16 Lecture Concepts Of Genetics Tenth Edition Regulation of Gene Expression in Prokaryotes Chapter Contents 16.1 Prokaryotes Regulate Gene Expression in Response to Environmental Conditions 16.2

More information

MARGARET C. WIRTH, 1 * ARMELLE DELÉCLUSE, 2 BRIAN A. FEDERICI, 1,3 AND WILLIAM E. WALTON 1

MARGARET C. WIRTH, 1 * ARMELLE DELÉCLUSE, 2 BRIAN A. FEDERICI, 1,3 AND WILLIAM E. WALTON 1 APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Nov. 1998, p. 4174 4179 Vol. 64, No. 11 0099-2240/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Variable Cross-Resistance to

More information

Newly made RNA is called primary transcript and is modified in three ways before leaving the nucleus:

Newly made RNA is called primary transcript and is modified in three ways before leaving the nucleus: m Eukaryotic mrna processing Newly made RNA is called primary transcript and is modified in three ways before leaving the nucleus: Cap structure a modified guanine base is added to the 5 end. Poly-A tail

More information

BME 5742 Biosystems Modeling and Control

BME 5742 Biosystems Modeling and Control BME 5742 Biosystems Modeling and Control Lecture 24 Unregulated Gene Expression Model Dr. Zvi Roth (FAU) 1 The genetic material inside a cell, encoded in its DNA, governs the response of a cell to various

More information

CHAPTER 13 PROKARYOTE GENES: E. COLI LAC OPERON

CHAPTER 13 PROKARYOTE GENES: E. COLI LAC OPERON PROKARYOTE GENES: E. COLI LAC OPERON CHAPTER 13 CHAPTER 13 PROKARYOTE GENES: E. COLI LAC OPERON Figure 1. Electron micrograph of growing E. coli. Some show the constriction at the location where daughter

More information

RNA Synthesis and Processing

RNA Synthesis and Processing RNA Synthesis and Processing Introduction Regulation of gene expression allows cells to adapt to environmental changes and is responsible for the distinct activities of the differentiated cell types that

More information

Chapter 12. Genes: Expression and Regulation

Chapter 12. Genes: Expression and Regulation Chapter 12 Genes: Expression and Regulation 1 DNA Transcription or RNA Synthesis produces three types of RNA trna carries amino acids during protein synthesis rrna component of ribosomes mrna directs protein

More information

Bacillus thuringiensis and Its Pesticidal Crystal Proteins

Bacillus thuringiensis and Its Pesticidal Crystal Proteins MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, Sept. 1998, p. 775 806 Vol. 62, No. 3 1092-2172/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Bacillus thuringiensis and

More information

Toxicity and synergism in transgenic Escherichia coli expressing four genes from Bacillus thuringiensis subsp. israelensis

Toxicity and synergism in transgenic Escherichia coli expressing four genes from Bacillus thuringiensis subsp. israelensis Environmental Microbiology (2001) 3(12), 798±806 Toxicity and synergism in transgenic Escherichia coli expressing four genes from Bacillus thuringiensis subsp. israelensis Vadim Khasdan, 1 Eitan Ben-Dov,

More information

15.2 Prokaryotic Transcription *

15.2 Prokaryotic Transcription * OpenStax-CNX module: m52697 1 15.2 Prokaryotic Transcription * Shannon McDermott Based on Prokaryotic Transcription by OpenStax This work is produced by OpenStax-CNX and licensed under the Creative Commons

More information

+ regulation. ribosomes

+ regulation. ribosomes central dogma + regulation rpl DNA tsx rrna trna mrna ribosomes tsl ribosomal proteins structural proteins transporters enzymes srna regulators RNAp DNAp tsx initiation control by transcription factors

More information

Name Period The Control of Gene Expression in Prokaryotes Notes

Name Period The Control of Gene Expression in Prokaryotes Notes Bacterial DNA contains genes that encode for many different proteins (enzymes) so that many processes have the ability to occur -not all processes are carried out at any one time -what allows expression

More information

CHAPTER : Prokaryotic Genetics

CHAPTER : Prokaryotic Genetics CHAPTER 13.3 13.5: Prokaryotic Genetics 1. Most bacteria are not pathogenic. Identify several important roles they play in the ecosystem and human culture. 2. How do variations arise in bacteria considering

More information

3.B.1 Gene Regulation. Gene regulation results in differential gene expression, leading to cell specialization.

3.B.1 Gene Regulation. Gene regulation results in differential gene expression, leading to cell specialization. 3.B.1 Gene Regulation Gene regulation results in differential gene expression, leading to cell specialization. We will focus on gene regulation in prokaryotes first. Gene regulation accounts for some of

More information

4. Why not make all enzymes all the time (even if not needed)? Enzyme synthesis uses a lot of energy.

4. Why not make all enzymes all the time (even if not needed)? Enzyme synthesis uses a lot of energy. 1 C2005/F2401 '10-- Lecture 15 -- Last Edited: 11/02/10 01:58 PM Copyright 2010 Deborah Mowshowitz and Lawrence Chasin Department of Biological Sciences Columbia University New York, NY. Handouts: 15A

More information

Gene expression in prokaryotic and eukaryotic cells, Plasmids: types, maintenance and functions. Mitesh Shrestha

Gene expression in prokaryotic and eukaryotic cells, Plasmids: types, maintenance and functions. Mitesh Shrestha Gene expression in prokaryotic and eukaryotic cells, Plasmids: types, maintenance and functions. Mitesh Shrestha Plasmids 1. Extrachromosomal DNA, usually circular-parasite 2. Usually encode ancillary

More information

Regulation of Gene Expression in Bacteria and Their Viruses

Regulation of Gene Expression in Bacteria and Their Viruses 11 Regulation of Gene Expression in Bacteria and Their Viruses WORKING WITH THE FIGURES 1. Compare the structure of IPTG shown in Figure 11-7 with the structure of galactose shown in Figure 11-5. Why is

More information

Genetic Variation: The genetic substrate for natural selection. Horizontal Gene Transfer. General Principles 10/2/17.

Genetic Variation: The genetic substrate for natural selection. Horizontal Gene Transfer. General Principles 10/2/17. Genetic Variation: The genetic substrate for natural selection What about organisms that do not have sexual reproduction? Horizontal Gene Transfer Dr. Carol E. Lee, University of Wisconsin In prokaryotes:

More information

Name: SBI 4U. Gene Expression Quiz. Overall Expectation:

Name: SBI 4U. Gene Expression Quiz. Overall Expectation: Gene Expression Quiz Overall Expectation: - Demonstrate an understanding of concepts related to molecular genetics, and how genetic modification is applied in industry and agriculture Specific Expectation(s):

More information

Introduction to Molecular and Cell Biology

Introduction to Molecular and Cell Biology Introduction to Molecular and Cell Biology Molecular biology seeks to understand the physical and chemical basis of life. and helps us answer the following? What is the molecular basis of disease? What

More information

Translation - Prokaryotes

Translation - Prokaryotes 1 Translation - Prokaryotes Shine-Dalgarno (SD) Sequence rrna 3 -GAUACCAUCCUCCUUA-5 mrna...ggagg..(5-7bp)...aug Influences: Secondary structure!! SD and AUG in unstructured region Start AUG 91% GUG 8 UUG

More information

Biology 112 Practice Midterm Questions

Biology 112 Practice Midterm Questions Biology 112 Practice Midterm Questions 1. Identify which statement is true or false I. Bacterial cell walls prevent osmotic lysis II. All bacterial cell walls contain an LPS layer III. In a Gram stain,

More information

REGULATION OF GENE EXPRESSION. Bacterial Genetics Lac and Trp Operon

REGULATION OF GENE EXPRESSION. Bacterial Genetics Lac and Trp Operon REGULATION OF GENE EXPRESSION Bacterial Genetics Lac and Trp Operon Levels of Metabolic Control The amount of cellular products can be controlled by regulating: Enzyme activity: alters protein function

More information

2012 Univ Aguilera Lecture. Introduction to Molecular and Cell Biology

2012 Univ Aguilera Lecture. Introduction to Molecular and Cell Biology 2012 Univ. 1301 Aguilera Lecture Introduction to Molecular and Cell Biology Molecular biology seeks to understand the physical and chemical basis of life. and helps us answer the following? What is the

More information

Cloning and characterization of an insecticidal crystal protein gene from Bacillus thuringiensis subspecies kenyae

Cloning and characterization of an insecticidal crystal protein gene from Bacillus thuringiensis subspecies kenyae Indian Academy of Sciences Cloning and characterization of an insecticidal crystal protein gene from Bacillus thuringiensis subspecies kenyae HARI S. MISRA 1 *, NIVEDITA P. KHAIRNAR 1, MANJULA MATHUR 1,

More information

Regulation of Gene Expression at the level of Transcription

Regulation of Gene Expression at the level of Transcription Regulation of Gene Expression at the level of Transcription (examples are mostly bacterial) Diarmaid Hughes ICM/Microbiology VT2009 Regulation of Gene Expression at the level of Transcription (examples

More information

Analysis of Escherichia coli amino acid transporters

Analysis of Escherichia coli amino acid transporters Ph.D thesis Analysis of Escherichia coli amino acid transporters Presented by Attila Szvetnik Supervisor: Dr. Miklós Kálmán Biology Ph.D School University of Szeged Bay Zoltán Foundation for Applied Research

More information

Development Team. Regulation of gene expression in Prokaryotes: Lac Operon. Molecular Cell Biology. Department of Zoology, University of Delhi

Development Team. Regulation of gene expression in Prokaryotes: Lac Operon. Molecular Cell Biology. Department of Zoology, University of Delhi Paper Module : 15 : 23 Development Team Principal Investigator : Prof. Neeta Sehgal Department of Zoology, University of Delhi Co-Principal Investigator : Prof. D.K. Singh Department of Zoology, University

More information

Cannibalism by Sporulating Bacteria

Cannibalism by Sporulating Bacteria Cannibalism by Sporulating Bacteria José E. González-Pastor, Erret C. Hobbs, Richard Losick 2003. Science 301:510-513 Introduction Some bacteria form spores. Scientist are intrigued by them. Bacillus subtilis

More information

From gene to protein. Premedical biology

From gene to protein. Premedical biology From gene to protein Premedical biology Central dogma of Biology, Molecular Biology, Genetics transcription replication reverse transcription translation DNA RNA Protein RNA chemically similar to DNA,

More information

Cyt1A from Bacillus thuringiensis Synergizes Activity of Bacillus sphaericus against Aedes aegypti (Diptera: Culicidae)

Cyt1A from Bacillus thuringiensis Synergizes Activity of Bacillus sphaericus against Aedes aegypti (Diptera: Culicidae) APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Mar. 2000, p. 1093 1097 Vol. 66, No. 3 0099-2240/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Cyt1A from Bacillus thuringiensis

More information

Topic 4 - #14 The Lactose Operon

Topic 4 - #14 The Lactose Operon Topic 4 - #14 The Lactose Operon The Lactose Operon The lactose operon is an operon which is responsible for the transport and metabolism of the sugar lactose in E. coli. - Lactose is one of many organic

More information

Computational Biology: Basics & Interesting Problems

Computational Biology: Basics & Interesting Problems Computational Biology: Basics & Interesting Problems Summary Sources of information Biological concepts: structure & terminology Sequencing Gene finding Protein structure prediction Sources of information

More information

Computational Cell Biology Lecture 4

Computational Cell Biology Lecture 4 Computational Cell Biology Lecture 4 Case Study: Basic Modeling in Gene Expression Yang Cao Department of Computer Science DNA Structure and Base Pair Gene Expression Gene is just a small part of DNA.

More information

Translation and Operons

Translation and Operons Translation and Operons You Should Be Able To 1. Describe the three stages translation. including the movement of trna molecules through the ribosome. 2. Compare and contrast the roles of three different

More information

Bacterial Genetics & Operons

Bacterial Genetics & Operons Bacterial Genetics & Operons The Bacterial Genome Because bacteria have simple genomes, they are used most often in molecular genetics studies Most of what we know about bacterial genetics comes from the

More information

UNIT 5. Protein Synthesis 11/22/16

UNIT 5. Protein Synthesis 11/22/16 UNIT 5 Protein Synthesis IV. Transcription (8.4) A. RNA carries DNA s instruction 1. Francis Crick defined the central dogma of molecular biology a. Replication copies DNA b. Transcription converts DNA

More information

Prokaryotic Regulation

Prokaryotic Regulation Prokaryotic Regulation Control of transcription initiation can be: Positive control increases transcription when activators bind DNA Negative control reduces transcription when repressors bind to DNA regulatory

More information

Manipulation for Effective Biological Control of Mosquitoes

Manipulation for Effective Biological Control of Mosquitoes MICROBIOLOGIcAL REVIEWS, Dec. 1993, p. 838-861 Vol. 57, No. 4 0146-0749/93/040838-24$02.00/0 Copyright X) 1993, American Society for Microbiology Mosquitocidal Toxins of Bacilli and Their Genetic Manipulation

More information

1. In most cases, genes code for and it is that

1. In most cases, genes code for and it is that Name Chapter 10 Reading Guide From DNA to Protein: Gene Expression Concept 10.1 Genetics Shows That Genes Code for Proteins 1. In most cases, genes code for and it is that determine. 2. Describe what Garrod

More information

Regulation of gene expression. Premedical - Biology

Regulation of gene expression. Premedical - Biology Regulation of gene expression Premedical - Biology Regulation of gene expression in prokaryotic cell Operon units system of negative feedback positive and negative regulation in eukaryotic cell - at any

More information

Eukaryotic Gene Expression

Eukaryotic Gene Expression Eukaryotic Gene Expression Lectures 22-23 Several Features Distinguish Eukaryotic Processes From Mechanisms in Bacteria 123 Eukaryotic Gene Expression Several Features Distinguish Eukaryotic Processes

More information

Lecture 4: Transcription networks basic concepts

Lecture 4: Transcription networks basic concepts Lecture 4: Transcription networks basic concepts - Activators and repressors - Input functions; Logic input functions; Multidimensional input functions - Dynamics and response time 2.1 Introduction The

More information

Dynamic optimisation identifies optimal programs for pathway regulation in prokaryotes. - Supplementary Information -

Dynamic optimisation identifies optimal programs for pathway regulation in prokaryotes. - Supplementary Information - Dynamic optimisation identifies optimal programs for pathway regulation in prokaryotes - Supplementary Information - Martin Bartl a, Martin Kötzing a,b, Stefan Schuster c, Pu Li a, Christoph Kaleta b a

More information

Controlling Gene Expression

Controlling Gene Expression Controlling Gene Expression Control Mechanisms Gene regulation involves turning on or off specific genes as required by the cell Determine when to make more proteins and when to stop making more Housekeeping

More information

REVIEW SESSION. Wednesday, September 15 5:30 PM SHANTZ 242 E

REVIEW SESSION. Wednesday, September 15 5:30 PM SHANTZ 242 E REVIEW SESSION Wednesday, September 15 5:30 PM SHANTZ 242 E Gene Regulation Gene Regulation Gene expression can be turned on, turned off, turned up or turned down! For example, as test time approaches,

More information

Reading Assignments. A. Genes and the Synthesis of Polypeptides. Lecture Series 7 From DNA to Protein: Genotype to Phenotype

Reading Assignments. A. Genes and the Synthesis of Polypeptides. Lecture Series 7 From DNA to Protein: Genotype to Phenotype Lecture Series 7 From DNA to Protein: Genotype to Phenotype Reading Assignments Read Chapter 7 From DNA to Protein A. Genes and the Synthesis of Polypeptides Genes are made up of DNA and are expressed

More information

Big Idea 3: Living systems store, retrieve, transmit and respond to information essential to life processes. Tuesday, December 27, 16

Big Idea 3: Living systems store, retrieve, transmit and respond to information essential to life processes. Tuesday, December 27, 16 Big Idea 3: Living systems store, retrieve, transmit and respond to information essential to life processes. Enduring understanding 3.B: Expression of genetic information involves cellular and molecular

More information

PROTEIN SYNTHESIS INTRO

PROTEIN SYNTHESIS INTRO MR. POMERANTZ Page 1 of 6 Protein synthesis Intro. Use the text book to help properly answer the following questions 1. RNA differs from DNA in that RNA a. is single-stranded. c. contains the nitrogen

More information

Genetic transcription and regulation

Genetic transcription and regulation Genetic transcription and regulation Central dogma of biology DNA codes for DNA DNA codes for RNA RNA codes for proteins not surprisingly, many points for regulation of the process DNA codes for DNA replication

More information

From Gene to Protein

From Gene to Protein From Gene to Protein Gene Expression Process by which DNA directs the synthesis of a protein 2 stages transcription translation All organisms One gene one protein 1. Transcription of DNA Gene Composed

More information

the noisy gene Biology of the Universidad Autónoma de Madrid Jan 2008 Juan F. Poyatos Spanish National Biotechnology Centre (CNB)

the noisy gene Biology of the Universidad Autónoma de Madrid Jan 2008 Juan F. Poyatos Spanish National Biotechnology Centre (CNB) Biology of the the noisy gene Universidad Autónoma de Madrid Jan 2008 Juan F. Poyatos Spanish National Biotechnology Centre (CNB) day III: noisy bacteria - Regulation of noise (B. subtilis) - Intrinsic/Extrinsic

More information

Review Recombinant bacteria for mosquito control

Review Recombinant bacteria for mosquito control The Journal of Experimental Biology 206, 3877-3885 2003 The Company of Biologists Ltd doi:10.1242/jeb.00643 3877 Review Recombinant bacteria for mosquito control B. A. Federici*, H.-W. Park, D. K. Bideshi,

More information

GCD3033:Cell Biology. Transcription

GCD3033:Cell Biology. Transcription Transcription Transcription: DNA to RNA A) production of complementary strand of DNA B) RNA types C) transcription start/stop signals D) Initiation of eukaryotic gene expression E) transcription factors

More information

The Complete Genome Sequence of Bacillus thuringiensis subsp. chinensis strain CT-43

The Complete Genome Sequence of Bacillus thuringiensis subsp. chinensis strain CT-43 JB Accepts, published online ahead of print on 6 May 2011 J. Bacteriol. doi:10.1128/jb.05085-11 Copyright 2011, American Society for Microbiology and/or the Listed Authors/Institutions. All Rights Reserved.

More information

GENE ACTIVITY Gene structure Transcription Transcript processing mrna transport mrna stability Translation Posttranslational modifications

GENE ACTIVITY Gene structure Transcription Transcript processing mrna transport mrna stability Translation Posttranslational modifications 1 GENE ACTIVITY Gene structure Transcription Transcript processing mrna transport mrna stability Translation Posttranslational modifications 2 DNA Promoter Gene A Gene B Termination Signal Transcription

More information

Regulation of Gene Expression

Regulation of Gene Expression Chapter 18 Regulation of Gene Expression Edited by Shawn Lester PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley

More information

Introduction to Microbiology BIOL 220 Summer Session I, 1996 Exam # 1

Introduction to Microbiology BIOL 220 Summer Session I, 1996 Exam # 1 Name I. Multiple Choice (1 point each) Introduction to Microbiology BIOL 220 Summer Session I, 1996 Exam # 1 B 1. Which is possessed by eukaryotes but not by prokaryotes? A. Cell wall B. Distinct nucleus

More information

Helical Macrofiber Formation in Bacillus subtilis: Inhibition by Penicillin G

Helical Macrofiber Formation in Bacillus subtilis: Inhibition by Penicillin G JOURNAL OF BACTERIOLOGY, June 1984, p. 1182-1187 0021-9193/84/061182-06$02.00/0 Copyright C 1984, American Society for Microbiology Vol. 158, No. 3 Helical Macrofiber Formation in Bacillus subtilis: Inhibition

More information

Fitness constraints on horizontal gene transfer

Fitness constraints on horizontal gene transfer Fitness constraints on horizontal gene transfer Dan I Andersson University of Uppsala, Department of Medical Biochemistry and Microbiology, Uppsala, Sweden GMM 3, 30 Aug--2 Sep, Oslo, Norway Acknowledgements:

More information

Chapter 17. From Gene to Protein. Biology Kevin Dees

Chapter 17. From Gene to Protein. Biology Kevin Dees Chapter 17 From Gene to Protein DNA The information molecule Sequences of bases is a code DNA organized in to chromosomes Chromosomes are organized into genes What do the genes actually say??? Reflecting

More information

Molecular Biology - Translation of RNA to make Protein *

Molecular Biology - Translation of RNA to make Protein * OpenStax-CNX module: m49485 1 Molecular Biology - Translation of RNA to make Protein * Jerey Mahr Based on Translation by OpenStax This work is produced by OpenStax-CNX and licensed under the Creative

More information

Multiple Choice Review- Eukaryotic Gene Expression

Multiple Choice Review- Eukaryotic Gene Expression Multiple Choice Review- Eukaryotic Gene Expression 1. Which of the following is the Central Dogma of cell biology? a. DNA Nucleic Acid Protein Amino Acid b. Prokaryote Bacteria - Eukaryote c. Atom Molecule

More information

Genetic transcription and regulation

Genetic transcription and regulation Genetic transcription and regulation Central dogma of biology DNA codes for DNA DNA codes for RNA RNA codes for proteins not surprisingly, many points for regulation of the process https://www.youtube.com/

More information

Boolean models of gene regulatory networks. Matthew Macauley Math 4500: Mathematical Modeling Clemson University Spring 2016

Boolean models of gene regulatory networks. Matthew Macauley Math 4500: Mathematical Modeling Clemson University Spring 2016 Boolean models of gene regulatory networks Matthew Macauley Math 4500: Mathematical Modeling Clemson University Spring 2016 Gene expression Gene expression is a process that takes gene info and creates

More information

Revision of the Nomenclature for the Bacillus thuringiensis Pesticidal Crystal Proteins

Revision of the Nomenclature for the Bacillus thuringiensis Pesticidal Crystal Proteins MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, Sept. 1998, p. 807 813 Vol. 62, No. 3 1092-2172/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Revision of the Nomenclature

More information

Organization of Genes Differs in Prokaryotic and Eukaryotic DNA Chapter 10 p

Organization of Genes Differs in Prokaryotic and Eukaryotic DNA Chapter 10 p Organization of Genes Differs in Prokaryotic and Eukaryotic DNA Chapter 10 p.110-114 Arrangement of information in DNA----- requirements for RNA Common arrangement of protein-coding genes in prokaryotes=

More information

Revisiting the Central Dogma The role of Small RNA in Bacteria

Revisiting the Central Dogma The role of Small RNA in Bacteria Graduate Student Seminar Revisiting the Central Dogma The role of Small RNA in Bacteria The Chinese University of Hong Kong Supervisor : Prof. Margaret Ip Faculty of Medicine Student : Helen Ma (PhD student)

More information

Horizontal transfer and pathogenicity

Horizontal transfer and pathogenicity Horizontal transfer and pathogenicity Victoria Moiseeva Genomics, Master on Advanced Genetics UAB, Barcelona, 2014 INDEX Horizontal Transfer Horizontal gene transfer mechanisms Detection methods of HGT

More information

Microbial Genetics, Mutation and Repair. 2. State the function of Rec A proteins in homologous genetic recombination.

Microbial Genetics, Mutation and Repair. 2. State the function of Rec A proteins in homologous genetic recombination. Answer the following questions 1. Define genetic recombination. Microbial Genetics, Mutation and Repair 2. State the function of Rec A proteins in homologous genetic recombination. 3. List 3 types of bacterial

More information

Translation. A ribosome, mrna, and trna.

Translation. A ribosome, mrna, and trna. Translation The basic processes of translation are conserved among prokaryotes and eukaryotes. Prokaryotic Translation A ribosome, mrna, and trna. In the initiation of translation in prokaryotes, the Shine-Dalgarno

More information

Molecular Biology, Genetic Engineering & Biotechnology Operons ???

Molecular Biology, Genetic Engineering & Biotechnology Operons ??? 1 Description of Module Subject Name?? Paper Name Module Name/Title XV- 04: 2 OPERONS OBJECTIVES To understand how gene is expressed and regulated in prokaryotic cell To understand the regulation of Lactose

More information

Gene regulation II Biochemistry 302. Bob Kelm February 28, 2005

Gene regulation II Biochemistry 302. Bob Kelm February 28, 2005 Gene regulation II Biochemistry 302 Bob Kelm February 28, 2005 Catabolic operons: Regulation by multiple signals targeting different TFs Catabolite repression: Activity of lac operon is restricted when

More information

Vital Statistics Derived from Complete Genome Sequencing (for E. coli MG1655)

Vital Statistics Derived from Complete Genome Sequencing (for E. coli MG1655) We still consider the E. coli genome as a fairly typical bacterial genome, and given the extensive information available about this organism and it's lifestyle, the E. coli genome is a useful point of

More information

The Gene The gene; Genes Genes Allele;

The Gene The gene; Genes Genes Allele; Gene, genetic code and regulation of the gene expression, Regulating the Metabolism, The Lac- Operon system,catabolic repression, The Trp Operon system: regulating the biosynthesis of the tryptophan. Mitesh

More information

56:198:582 Biological Networks Lecture 8

56:198:582 Biological Networks Lecture 8 56:198:582 Biological Networks Lecture 8 Course organization Two complementary approaches to modeling and understanding biological networks Constraint-based modeling (Palsson) System-wide Metabolism Steady-state

More information

Three types of RNA polymerase in eukaryotic nuclei

Three types of RNA polymerase in eukaryotic nuclei Three types of RNA polymerase in eukaryotic nuclei Type Location RNA synthesized Effect of α-amanitin I Nucleolus Pre-rRNA for 18,.8 and 8S rrnas Insensitive II Nucleoplasm Pre-mRNA, some snrnas Sensitive

More information

The Bacillus thuringiensis cyt Genes for Hemolytic Endotoxins Constitute a Gene Family

The Bacillus thuringiensis cyt Genes for Hemolytic Endotoxins Constitute a Gene Family APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Mar. 2001, p. 1090 1096 Vol. 67, No. 3 0099-2240/01/$04.00 0 DOI: 10.1128/AEM.67.3.1090 1096.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved.

More information

Biology 105/Summer Bacterial Genetics 8/12/ Bacterial Genomes p Gene Transfer Mechanisms in Bacteria p.

Biology 105/Summer Bacterial Genetics 8/12/ Bacterial Genomes p Gene Transfer Mechanisms in Bacteria p. READING: 14.2 Bacterial Genomes p. 481 14.3 Gene Transfer Mechanisms in Bacteria p. 486 Suggested Problems: 1, 7, 13, 14, 15, 20, 22 BACTERIAL GENETICS AND GENOMICS We still consider the E. coli genome

More information

GENE REGULATION AND PROBLEMS OF DEVELOPMENT

GENE REGULATION AND PROBLEMS OF DEVELOPMENT GENE REGULATION AND PROBLEMS OF DEVELOPMENT By Surinder Kaur DIET Ropar Surinder_1998@ yahoo.in Mob No 9988530775 GENE REGULATION Gene is a segment of DNA that codes for a unit of function (polypeptide,

More information

Molecular Biology (9)

Molecular Biology (9) Molecular Biology (9) Translation Mamoun Ahram, PhD Second semester, 2017-2018 1 Resources This lecture Cooper, Ch. 8 (297-319) 2 General information Protein synthesis involves interactions between three

More information

BACTERIAL PHYSIOLOGY SMALL GROUP. Monday, August 25, :00pm. Faculty: Adam Driks, Ph.D. Alan Wolfe, Ph.D.

BACTERIAL PHYSIOLOGY SMALL GROUP. Monday, August 25, :00pm. Faculty: Adam Driks, Ph.D. Alan Wolfe, Ph.D. BACTERIAL PHYSIOLOGY SMALL GROUP Monday, August 25, 2014 1:00pm Faculty: Adam Driks, Ph.D. Alan Wolfe, Ph.D. Learning Goal To understand how bacterial physiology applies to the diagnosis and treatment

More information

GENETICS - CLUTCH CH.11 TRANSLATION.

GENETICS - CLUTCH CH.11 TRANSLATION. !! www.clutchprep.com CONCEPT: GENETIC CODE Nucleotides and amino acids are translated in a 1 to 1 method The triplet code states that three nucleotides codes for one amino acid - A codon is a term for

More information

Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors

Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, June 2008, p. 266 300 Vol. 72, No. 2 1092-2172/08/$08.00 0 doi:10.1128/mmbr.00001-08 Copyright 2008, American Society for Microbiology. All Rights Reserved.

More information

Supplemental Materials

Supplemental Materials JOURNAL OF MICROBIOLOGY & BIOLOGY EDUCATION, May 2013, p. 107-109 DOI: http://dx.doi.org/10.1128/jmbe.v14i1.496 Supplemental Materials for Engaging Students in a Bioinformatics Activity to Introduce Gene

More information

Bacterial Morphology and Structure م.م رنا مشعل

Bacterial Morphology and Structure م.م رنا مشعل Bacterial Morphology and Structure م.م رنا مشعل SIZE OF BACTERIA Unit for measurement : Micron or micrometer, μm: 1μm=10-3 mm Size: Varies with kinds of bacteria, and also related to their age and external

More information

Initiation of translation in eukaryotic cells:connecting the head and tail

Initiation of translation in eukaryotic cells:connecting the head and tail Initiation of translation in eukaryotic cells:connecting the head and tail GCCRCCAUGG 1: Multiple initiation factors with distinct biochemical roles (linking, tethering, recruiting, and scanning) 2: 5

More information

Gene Control Mechanisms at Transcription and Translation Levels

Gene Control Mechanisms at Transcription and Translation Levels Gene Control Mechanisms at Transcription and Translation Levels Dr. M. Vijayalakshmi School of Chemical and Biotechnology SASTRA University Joint Initiative of IITs and IISc Funded by MHRD Page 1 of 9

More information

UNIT 6 PART 3 *REGULATION USING OPERONS* Hillis Textbook, CH 11

UNIT 6 PART 3 *REGULATION USING OPERONS* Hillis Textbook, CH 11 UNIT 6 PART 3 *REGULATION USING OPERONS* Hillis Textbook, CH 11 REVIEW: Signals that Start and Stop Transcription and Translation BUT, HOW DO CELLS CONTROL WHICH GENES ARE EXPRESSED AND WHEN? First of

More information

Welcome to Class 21!

Welcome to Class 21! Welcome to Class 21! Introductory Biochemistry! Lecture 21: Outline and Objectives l Regulation of Gene Expression in Prokaryotes! l transcriptional regulation! l principles! l lac operon! l trp attenuation!

More information

Translation Part 2 of Protein Synthesis

Translation Part 2 of Protein Synthesis Translation Part 2 of Protein Synthesis IN: How is transcription like making a jello mold? (be specific) What process does this diagram represent? A. Mutation B. Replication C.Transcription D.Translation

More information

Warm-Up. Explain how a secondary messenger is activated, and how this affects gene expression. (LO 3.22)

Warm-Up. Explain how a secondary messenger is activated, and how this affects gene expression. (LO 3.22) Warm-Up Explain how a secondary messenger is activated, and how this affects gene expression. (LO 3.22) Yesterday s Picture The first cell on Earth (approx. 3.5 billion years ago) was simple and prokaryotic,

More information

Gene regulation I Biochemistry 302. Bob Kelm February 25, 2005

Gene regulation I Biochemistry 302. Bob Kelm February 25, 2005 Gene regulation I Biochemistry 302 Bob Kelm February 25, 2005 Principles of gene regulation (cellular versus molecular level) Extracellular signals Chemical (e.g. hormones, growth factors) Environmental

More information

Protein Patterns and Larvicide Activity of Crystalline Inclusions of Bacillus thuringiensis ssp. kumamotoensis DSM 6070

Protein Patterns and Larvicide Activity of Crystalline Inclusions of Bacillus thuringiensis ssp. kumamotoensis DSM 6070 J. Agr. Sci. Tech. (2016) Vol. 18: 1945-1951 Protein Patterns and Larvicide Activity of Crystalline Inclusions of Bacillus thuringiensis ssp. kumamotoensis DSM 6070 J. Kutasi 1, R. Kovacs 1, I. Puspan

More information

Genetic Basis of Variation in Bacteria

Genetic Basis of Variation in Bacteria Mechanisms of Infectious Disease Fall 2009 Genetics I Jonathan Dworkin, PhD Department of Microbiology jonathan.dworkin@columbia.edu Genetic Basis of Variation in Bacteria I. Organization of genetic material

More information

Bi 1x Spring 2014: LacI Titration

Bi 1x Spring 2014: LacI Titration Bi 1x Spring 2014: LacI Titration 1 Overview In this experiment, you will measure the effect of various mutated LacI repressor ribosome binding sites in an E. coli cell by measuring the expression of a

More information