JBC Papers in Press. Published on June 18, 2007 as Manuscript R
|
|
- Geraldine Griffin
- 6 years ago
- Views:
Transcription
1 JBC Papers in Press. Published on June 18, 2007 as Manuscript R The latest version is at CONTROL OF ACTIN ASSEMBLY DYNAMICS IN CELL MOTILITY Marie-France Carlier and Dominique Pantaloni Cytoskeleton dynamics and motility group, Laboratoire d Enzymologie et Biochimie Structurale CNRS, Gif-sur-Yvette, France Address correspondence to : Marie-France Carlier, LEBS, CNRS, 1 avenue de la Terrasse, Gif-sur-Yvette, France. Phone : ; carlier@lebs.cnrs-gif.fr Motile processes at the origin of cell migration, cell division, synaptic plasticity and endocytosis, but also morphogenetic processes that define anterior-posterior and ventral-dorsal polarity of the embryo, or left-right asymmetry, are driven by spatially and temporally controlled assembly of actin filaments (1-4). Cell biological studies and reconstituted motility assays indicate that polarized filament barbed end growth, at specific sites at the membrane, generates the forces responsible for lamellipodia and filopodia extension, as well as tensile forces that strengthen focal adhesions. Fluorescence speckle microscopy of actin and of regulatory proteins in motile cells show that morphologically and dynamically distinct networks of actin filaments initiated at the plasma membrane coexist in the cell and define cellular compartments (5, 6). How are these different turnover rates coordinated to achieve directional movement in response to extracellular cues? How can regulatory proteins recognize distinct actin networks? What are the relationships between the force produced by filament barbed end growth that deforms the membrane and the molecular mechanism of the protein machineries that link barbed ends to the membrane? New insight in these issues emerge from recent cellular, physical and biochemical approaches. Control of filament barbed end growth. In living cells, actin filaments (F-actin) are assembled at a steady state and turn over via pointed end depolymerization balanced by barbed end polymerization, a process called treadmilling. The treadmilling of pure muscle actin is very slow (of the order of 0.1 subunit/s, meaning that a 3 µm long filament is renewed in 2 hours). Treadmilling is accelerated by two orders of magnitude in motile processes like lamellipodia or filopodia, due to the activity of ADF/cofilins (7). In other structures like microvilli, treadmilling is slowed down, by spatially regulated barbed end capping of e.g. actin bundles in the stereocilia of the inner ear (8). Treadmilling thus appears as a universal mechanism that drives actin dynamics in eukaryotes. The stationary concentration of polymerizable ATP-G-actin is determined by the overall flux of pointed end depolymerization and by the availability and reactivity of barbed ends. Both are finely regulated. Polymerizable monomeric ATP-actin consists of free ATP-G-actin and complexes of ATP-G-actin with profilin or with functional homologs of profilin like WH2-domain proteins of the actobindin family (9-12). These proteins make a complex with G-actin that participates in barbed end assembly specifically. Profilin and its functional homologs thus play a crucial role in barbed end growth and motility. Most often, ATP-G-actin is in rapid equilibrium with these proteins (called collectively Wi) while filament assembly is an actual process. Each G-actin-Wi complex associates with free barbed ends with its own rate constant k B +i, and displays its own intrinsic barbed end critical concentration C B Ci. The steady-state concentrations of ATP- G-actin, [T] SS, and of the assembly competent complexes, [TWi] SS, depend on the flux of pointed end depolymerization. Proteins of the ADF/cofilin family, acting in synergy with Aip1, enhance pointed end depolymerization in a signal-responsive fashion (13). By increasing the steady-state concentration of ATP-G-actin, they contribute to increase the rates of barbed end nucleation and growth. The specific localization of ADF in the lamellipodium has been recently explained by the fact that the ADF-activating Slingshot phosphatase (14, 15) becomes active by binding the filaments that are initiated upon lamellipodium formation (16). The thermodynamic (C B Ci ) and kinetic (k B +i, k B -i ) parameters are affected by proteins that associate with barbed ends and may either block barbed end assembly and depolymerization, like capping proteins, slow down assembly and/or disassembly, or enhance barbed end growth like formins. Hence barbed ends are distributed in a variety of dynamically distinct classes. The values of [T] SS and [TWi] SS that are established at a given time in the cell depend on the number of 1 Copyright 2007 by The American Society for Biochemistry and Molecular Biology, Inc.
2 filament pointed ends and on the number of barbed ends in each class (Figure 1). The kinetic parameters of capping protein interaction with barbed ends vary greatly from one protein to the other. Capping Protein ab dissociates so slowly from barbed ends that this process could be limiting in motility. The uncapping activity of CARMIL (17, 18) may therefore be important in the regulation of barbed end growth. The capping activity may also be integrated in a modular protein, like Eps8, which spatially and temporally restricts its function, in response to local signals (19). Finally a protein known to sequester ADP-actin, twinfilin, has also been identified as a capping protein. One of the consequences of the combined activities of twinfilin is revealed in an integrated motility assay in which formin and twinfilin are operating simultaneously. The sequestration of ADP-actin has a buffering effect on the level of barbed end capping by twinfilin. In turn this buffering effect maintains a low remanent activity of formin (20). These results should foster experiments aiming at testing potential genetic interaction between twinfilin and formin. Conversely, the discovery of genetic interactions between two actin regulatory proteins should foster the design of reconstituted assays combining both proteins, to discover new emerging properties. Most capping proteins are soluble, however proteins that nucleate barbed ends or that regulate barbed end growth rate often operate at the plasma membrane in a signal-responsive fashion. The best example is provided by formins. The auto-inhibited fold of formins is relieved in two consecutive steps by the binding of Rho GTPase (21), thus targetting activated formin at the membrane. The function of formins in actin filament dynamics is tightly regulated by profilin, a cofactor which is required for the activity of formins in vivo. In the absence of profilin, formins nucleate filaments and cap barbed ends more or less tightly. Cdc12 is a strong capper (22), while mdia1 and Bni1 are «leaky» cappers (23). Formins use the property of profilin to couple ATP hydrolysis to filament assembly, to catalyze rapid processive barbed end assembly, enhancing the rate constant for barbed end growth by one order of magnitude (28). Thus rapid formin-based motile processes may occur concomitantly with other slower actin-based motile processes mediated by free barbed end growth, at a given steady-state concentration of ATP-G-actin. As a result, agents that lower the steady-state concentration of G-actin by stabilizing filaments (e.g. tropomyosin) are expected to further depress the formation of the branched filament array while still allowing formin-based motile processes. In conclusion, what we know from the biochemistry of actin and its regulators lets us anticipate that the assembly dynamics at individual barbed ends can vary to large extents in different regions of the cell. A more complex situation may occur if the diffusion of ATP-Gactin is low enough for significant gradients of G- actin to build up in regions of the cytoplasm. Control of the G-actin/F-actin ratio : Sequestering proteins In addition to polymerizable G-actin, cells contain a pool of non-polymerizable G- actin, which consists of G-actin in complex with sequestering proteins (S), like ß-thymosins (24). ß-Thymosin-actin complexes (TS) do not participate in filament assembly at either end and are in rapid equilibrium with free ATP-G-actin. Hence the amount of sequestered actin at steady state is determined, at any time, by the concentration of free ATP-G-actin, [T] SS : [TS] SS = [S 0 ].[T] SS /([T] SS + K S ) (1) where [S 0 ] is the total concentration of sequestering agent, and K S is the equilibrium dissociation constant for the TS complex. K S is higher than [T] SS, hence according to equation (1), changes in [T] SS generate large changes in the pool of sequestered actin, reflected by changes in the amount of F-actin. G-actin sequesterers do not affect the velocity of motile processes, since the TS complex does not feed barbed end growth. However, they do affect the force produced, because they determine the amount of F-actin that builds up when the creation of new filaments in response to signals causes the relaxation of the steady state of actin assembly to a lower value of [T] SS. Note that this relaxation process takes place without any massive production of free ATP-Gactin. Measuring the concentrations of polymerizable and non-polymerizable G-actin in vivo upon stimulus-induced changes in the motile state of the cell is a challenging task that will require refined imaging procedures that have not been developed yet. Insight into the mechanism of actin-based motility from reconstitution assays. Forces produced by the growth of actin filaments against a membrane, in response to 2
3 signalling (25) generate lamellipodial and filopodial protrusions, internalization of endocytic vesicles or propulsion of endosomes. Actin polymerization against the surface of intracellular pathogens Listeria and Shigella causes their propulsion, which made these bacteria the first natural functionalized particles mimicking the leading edge of migrating cells. The reconstitution of actin-based propulsion of a particle functionalized with N-WASP (26, 27) or with formin (28) in a solution of F-actin maintained at steady state with ATP as an energy source validated the principle of treadmilling as the fuel of movement in cells and delineated the minimum number of required proteins (ADF and profilin for formin, and additionally Arp2/3 and capping proteins for N-WASP). The same proteins were found essential for lamellipodium extension in vivo (29). Reconstituted motility assays also enabled controlled measurements of the force produced by actin polymerization (30). WASP family proteins use Arp2/3 complex to branch filaments at the leading edge, while formins may contribute to lamellipodium or filopodium or nerve growth cone extension, or even supplement the absence of Arp2/3 (31, 32). How does a lamellipodium start extending? Arp2/3 generates new filaments only by branching. When a N-WASP-coated bead or vesicle is placed in a reconstituted motility solution of barbed end-capped filaments, Arp2/3, ADF and profilin, the filaments are never seen to adsorb onto N-WASP-Arp2/3 bound to the surface. The unpolarized actin meshwork that forms at the bead surface actually starts from G- actin. The treadmilling model accounts for this fact as follows. The motility medium maintains a steady-state concentration of ATP-G-actin well above the critical concentration of barbed ends, favoring nucleation. Nuclei that have free barbed ends either abort by binding a barbed end capper, or branch at the bead surface upon transient interaction with the N-WASP-actin-Arp2/3 complex. Branching thus transiently protects from barbed end capping. It is likely that the same mechanism accounts for the initiation of the branched lamellipodial array. Similarly, formins use the dimer pre-nuclei present at steady state to initiate processive barbed end growth of new filaments at the leading edge. This process is more likely than the capture of barbed ends of existing filaments, which cannot diffuse rapidly in this confined cellular environment. How is actin assembly coordinated in the dendritic array and formin-induced bundles? How are the two arrays recognized by their specific regulators or bundling proteins? Reconstituted motility assays show that optimized actin-based movement is not obtained with the exact same medium composition for the WASP/Arp2/3 and formin systems. Propulsion of a WASP-functionalized particle by formation of a branched filament arrray relies on the balance between the sustained generation of new filaments at the particle surface by WASP- Arp2/3-induced filament branching and the disappearance of growing filaments by barbed end capping. This balance maintains a stationary number of growing filaments. The branched filament array thus contains an equal number of incorporated molecules of Arp2/3 and capping protein. Increasing the concentration of capping protein in the medium leads to an increase in branching density of the meshwork (27). In contrast, capping proteins, which compete with formin for barbed end binding, are negative regulators of the propulsion of formincoated beads (28). In conclusion, in vitro, capping proteins favor the formation of a highly densely branched array but inhibit formin-based processes. Remarkably, the same phenotype is observed in vivo (33): depletion of capping protein abolishes lamellipodia and favors formininduced filopodia (34). In conclusion, the same physical-chemical principles govern the dynamics of individual machineries and organize the crosstalk between them. The fact that two populations of filaments with different dynamics may be regulated by different proteins is amazing. The possibility cannot be discarded that the machineries that control barbed end growth also control the structure of the filament over some distance (35, 36). The actin filament has a versatile structure and subtle structural changes induced by barbed end-binding regulators may favor the binding of e.g. distinctive bundling proteins, thus further differentiating the function of actin arrays. This might explain why bundling proteins like fascin (37) or espin (38) are found associated with bundles of filaments initiated by different machineries. Attachments between the membrane and actin filaments during protrusion : from molecular processes to macroscopic behavior. The directionality of cell protrusions is determined and maintained by dynamic links between the membrane and the actin filaments. Different mechanisms were proposed to link the 3
4 membrane to growing filaments. The forcevelocity relationships predicted by the models derived from these different mechanisms are different. Protrusive force produced by the growth of a branched filament array has been most extensively sudied. Activated Arp2/3 complex was proposed to associate with the sides of actin filaments in the lamellipodium to initiate lateral branches. Insertional polymerization would occur in the small interval made available by the fluctuations of the membrane between the barbed ends and the lipid bilayer, and filaments would never attach to the membrane (39). This model is unable to reasonably account for directional protrusion. The perpetuation of the polarized dendritic pattern during sustained lamellipodium extension requires some kind of cyclic either transient or permanent - connection between the membrane and the filaments as they grow (40). Biomimetic assays of propulsion of N-WASP-functionalized microspheres or vesicles demonstrated that the actin tail was attached to the particle surface (30, 41, 42), suggesting that similar bonds exist between the filaments and the membrane during protrusion. Lateral mobility of lipids appears strongly hampered at the leading edge by association of filament barbed ends with membrane components (43). What kind of link then could generate filament attachment, yet allow barbed end growth? Are the attachments permanent during filament growth, or transient? Are the attachments linked to the filament branching activity of N-WASP or are they independent of branching? These issues, which are central to physical models of protrusion, are no doubt to be solved only by a thorough analysis of the biochemical steps in the reactions of filament branching and elongation, using solution polymerization kinetics, structural analysis of the complexes involved and microscopy assays of individual filaments initiated at a surface. Progress is still expected from all methods. Polymerization assays in bulk solution so far provided conflicting results regarding the molecular mechanism of filament branching. Some data favored side branching of filaments by Arp2/3 complex «activated» by N-WASP (44). Other data showed that branching occurred at and required free barbed ends (45-47). In the branching «activated» Arp2/3 complex, the WH2 domain of N-WASP binds one molecule of G-actin and the CA domain binds one molecule of Arp2/3. The WH2-actin subcomplex, like profilin-actin, can associate productively with barbed ends (48). Therefore N-WASP is an immobilized enzyme, either at the membrane or at the surface of Shigella or of beads and Arp2/3 complex, G-actin and the filament its subtrates (49). It was proposed that N-WASP-actin-Arp2/3 complex associated with a filament via productive association of WH2-actin to the barbed end, CA-Arp2/3 initiating a lateral branch. The rate of detachment of the branch junction from N-WASP plays a determinant role in propulsion. In motility assays, a pulse of fluorescent Arp2/3 led to initial labeling of N- WASP at the bead surface, followed by diffusional penetration of fluorescent Arp2/3 from the bead surface into the actin tail, at a rate identical to filament growth (27). A model of «tethered ratchet» for actin-based motility was derived, in which filaments are transiently attached to the bead surface (50, 51). Recent data show that the complex of the isolated WH2 domain with ATP-G-actin binds barbed ends and mediates the attachment of filaments at the beadtail interface (52). The attachments appear dynamic when N-WASP, containing both WH2 and CA moieties, is able to branch filaments, while they remain quasi-permanent when only the WH2-actin moiety associates with barbed ends. It is possible that ATP hydrolysis causes dissociation of WH2 from the barbed end (53). The Arp2/3 complex may also play a role in the transient attachment. In support to this view, the segregation of N-WASP at the rear of propelling giant liposomes appears to depend on Arp2/3 complex (Delatour et al., submitted). Structural organization of the subunits of Arp2/3 complex at the branch junction is expected to provide mechanistic insight into the branching process. Conflicting orientations of the complex axis have been proposed (54-56), and no information exists on the position of the WH2- bound actin incorporated in the branch. Biases may occur when computing differences in projection maps of branched filaments containing Arp2/3 associated or not with tags. In summary, the complete kinetic analysis of the elementary reactions involved in filament branching, and the characterization of transient complexes in the cycle of filament attachment-branching are important future trends of research. Formins do maintain a permanent attachment to the filament barbed ends during processive growth, and truly behave as endtracking stepping motors (57). The molecular mechanism of processivity of formins and the 4
5 role of ATP hydrolysis associated with profilinactin processive assembly are not fully understood. Non-invasive methods have not always been used to show evidence for processivity, and forces that maintain growing filament ends in the vicinity of the immobilized formin may bias the conclusions. Some data indicate that filaments can be assembled processively from ADP-actin as well as from ATP-actin, and that profilin is not required (58-60). Other data (28) indicate that formin uses a major property of profilin, which is to couple ATP hydrolysis to filament growth. The crystal structure of the formin-actin complex (61) shows that formin caps barbed ends and a structural change implying the weakening of a formin-actin contact is required to allow processive assembly. Recent data support the structural model. As long as ATP is not hydrolyzed following association of profilin-actin to barbed ends, formin-bound profilin actually caps barbed ends (62). If ATP hydrolysis is involved in processivity of formin, the forces developed by processive filament assembly may be much greater than the force of the order of a piconewton which is produced by a freely fluctuating filament end (63). This measurement has not been performed yet. Biochemical and structural analysis of the transient complexes that are formed at the forminbound barbed end is needed to understand how molecular reactions control macroscopic behavior. So far formins and WASP/WAVE- Arp2/3 are the only known machineries that control barbed end nucleation and growth in motile processes. Other actin-binding proteins involved in morphogenetic or developmental processes are emerging. The WH2 domain protein Spire/Eg6 (64-66) plays a role in the definition of anterior-posterior and dorso-ventral axes in early embryogenesis. Spire nucleates actin filaments in vitro (65). The phenotypes of mutants of Spire and of the formin Cappuccino are similar and are mimicked by profilin depletion, suggesting that some functional interplay links these three proteins to optimize barbed end growth in processes directing oocyte polarity. Concluding remarks Self-assembly of actin filaments is at the heart of morphogenesis and movement in eukaryotic cells. The in vivo analysis of the dynamics of distinct actin arrays, the discovery of protein machineries that couple actin filaments to membrane dynamics and signalling, the development of reconstituted motility assays, the use of nanophysics methods to measure forces developed by actin, have largely contributed to the expansion of the actin field to boundary disciplines. It may not be a dream to imagine that using reconstituted systems of increasing complexity, the coordinated motility of an artificial cell will eventually be mimicked. The intrinsic properties of actin itself and their potential use by regulators are constantly being unveiled in the light of cellular phenomena. Yet, in many instances the analysis of molecular events using classical biochemical and structural approaches remains the limiting factor in future progress. REFERENCES 1. Pollard TD, Borisy GG. (2003) Cell 112, Rafelski SM, Theriot JA. (2004) Annu Rev Biochem. 73, Dormann D, Weijer CJ. (2006) Curr Opin Genet Dev. 16, Kaksonen M, Toret CP, Drubin DG. (2006) Nat Rev Mol Cell Biol. 7, Ponti A, Machacek M, Gupton SL, Waterman-Storer CM, Danuser G. (2004) Science 305, Iwasa JH, Mullins RD. (2007). Curr Biol. 17, Carlier MF, Ressad F, Pantaloni D. (1999) J Biol Chem. 274, Lin HW, Schneider ME, Kachar B. (2005) Curr Opin Cell Biol. 17, Paunola E, Mattila PK, Lappalainen P. (2002) FEBS Lett. 513, Boquet I, Boujemaa R, Carlier MF, Preat T. (2000) Cell 102, Hertzog M, Yarmola EG, Didry D, Bubb MR, Carlier MF. (2002) J Biol Chem. 277, Hertzog M, van Heijenoort C, Didry D, Gaudier M, Coutant J, Gigant B, Didelot G, Preat T, Knossow M, Guittet E, Carlier MF (2004) Cell 117, Ono S, Mohri K, Ono K. (2004) J Biol Chem. 279, Niwa R, Nagata-Ohashi K, Takeichi M, Mizuno K, Uemura T. (2002) Cell 108,
6 15. Sarmiere PD, Bamburg JR. (2004) J Neurobiol. 58, Nagata-Ohashi K, Ohta Y, Goto K, Chiba S, Mori R, Nishita M, Ohashi K, Kousaka K, Iwamatsu A, Niwa R, Uemura T, Mizuno K. (2004) J Cell Biol. 165., Yang C, Pring M, Wear MA, Huang M, Cooper JA, Svitkina TM, Zigmond SH. (2005) Cell 119, Uruno T, Remmert K, Hammer JA 3rd. (2006) J Biol Chem. 281, Disanza A, Carlier MF, Stradal TE, Didry D, Frittoli E, Confalonieri S, Croce A, Wehland J, Di Fiore PP, Scita G. (2004) Nat Cell Biol. 6, Helfer E, Nevalainen EM, Naumanen P, Romero S, Didry D, Pantaloni D, Lappalainen P, Carlier MF. (2006) EMBO J. 25, Rose R, Weyand M, Lammers M, Ishizaki T, Ahmadian MR, Wittinghofer A. (2005) Nature 435, Kovar DR, Kuhn JR, Tichy AL, Pollard TD. (2003) J Cell Biol. 161, Li F, Higgs HN. (2003) Curr Biol. 13, Safer D, Nachmias VT. (1994) Bioessays 16, Ridley AJ. (2006) Trends Cell Biol.16, Loisel TP, Boujemaa R, Pantaloni D, Carlier MF. (1999) Nature 401, Wiesner S, Helfer E, Didry D, Ducouret G, Lafuma F, Carlier MF, Pantaloni D. (2003) J Cell Biol.160, Romero S, Le Clainche C, Didry D, Egile C, Pantaloni D, Carlier MF. (2004) Cell 119, Rogers SL, Wiedemann U, Stuurman N, Vale RD. (2003) J Cell Biol.162, Marcy Y, Prost J, Carlier MF, Sykes C. (2004) Proc Natl Acad Sci U S A 101, Gupton SL, Anderson KL, Kole TP, Fischer RS, Ponti A, Hitchcock-DeGregori SE, Danuser G, Fowler VM, Wirtz D, Hanein D, Waterman-Storer CM. (2005) J Cell Biol. 168, Nardo A, Cicchetti G, Falet H, Hartwig JH, Stossel TP, Kwiatkowski DJ. (2005) Proc Natl Acad Sci U S A 102, Mejillano MR, Kojima S, Applewhite DA, Gertler FB, Svitkina TM, Borisy GG. (2004) Cell 118, Shirenbeck A, Bretschneider T, Arasada R, Schleicher M, Faix J. (2005) Nat Cell Biol. 7, Orlova A, Prochniewicz E, Egelman EH. (1995) J Mol Biol. 245, Papp G, Bugyi B, Ujfalusi Z, Barko S, Hild G, Somogyi B, Nyitrai M. (2006) Biophys J. 91, Vignjevic D, Kojima S, Aratyn Y, Danciu O, Svitkina T, Borisy GG. (2006) J Cell Biol.174, Sekerkova G, Zheng L, Loomis PA, Mugnaini E, Bartles JR. (2006) Cell Mol Life Sci. 63, Pollard TD (2007) Annu Rev Biophys Biomol Struct. 36, Takenawa T, Suetsugu S. (2007) Nat Rev Mol Cell Biol. 8, Gerbal F, Laurent V, Ott A, Carlier MF, Chaikin P, Prost J. (2000). Eur Biophys J. 29, Trichet L, Campas O, Sykes C and Plastino J (2007) Biophys. J. 92, Weisswange I, Bretschneider T, Anderson KI.(2005) J Cell Sci. 118, Amann KJ, Pollard TD. (2001) Nat Cell Biol. 3, Pantaloni D, Boujemaa R, Didry D, Gounon P, Carlier MF. (2000) Nat Cell Biol. 2, Boujemaa-Paterski R, Gouin E, Hansen G, Samarin S, Le Clainche C, Didry D, Dehoux P, Cossart P, Kocks C, Carlier MF, Pantaloni D. (2001) Biochemistry 40, Falet H, Hoffmeister KM, Neujahr R, Italiano JE Jr, Stossel TP, Southwick FS, Hartwig JH. (2002) Proc Natl Acad Sci U S A. 99, Egile C, Loisel TP, Laurent V, Li R, Pantaloni D, Sansonetti PJ, Carlier MF.(1999) J Cell Biol. 146, Pantaloni D, Le Clainche C, Carlier MF. Mechanism of actin-based motility. (2001) Science 292, Mogilner A, Oster G. (2003) Biophys J. 84, Mogilner A. (2006) Curr Opin Cell Biol. 18, Co C, Wong DT, Gierke S, Chang V, Taunton J. (2007) Cell 128,
7 53. Le Clainche C, Pantaloni D, Carlier MF. (2003) Proc Natl Acad Sci U S A 100, Beltzner CC, Pollard TD (2004) J Mol Biol 336, Aguda AH, Burtnick LD, Robinson RC (2005) EMBO Rep 6, Egile C, Rouiller I, Xu XP, Volkmann N, Li R, and Hanein, D (2005) PLoS Biol 3, Dickinson RB, Caro L, Purich DL.(2004) Biophys J. 87, Kovar DR, Pollard TD. (2004) Proc Natl Acad Sci U S A 101, Kovar DR, Harris ES, Mahaffy R, Higgs HN, Pollard TD. (2006) Cell 124, Vavylonis D, Kovar DR, O'Shaughnessy B, Pollard TD. (2006) Mol Cell. 21, Otomo T, Tomchick DR, Otomo C, Panchal SC, Machius M, Rosen MK.(2005) Nature 433, Romero S, Didry D, Larquet E, Boisset N, Pantaloni D, Carlier MF. (2007) J Biol Chem 282., Footer MJ, Kerssemakers JW, Theriot JA, Dogterom M. (2007) Proc Natl Acad Sci U S A 104, Wellington A, Emmons S, James B, Calley J, Grover M, Tolias P, Manseau L. (1999) Development 126, Quinlan ME, Heuser JE, Kerkhoff E, Mullins RD. (2005) Nature 433, Le Goff C, Laurent V, Le Bon K, Tanguy G, Couturier A, Le Goff X, Le Guellec R.(2006) Biol Cell. 98, FOOTNOTES We acknowledge financial support from HFSPO (grant RGP C), the ANR (Physique et Chimie du Vivant), the Ligue Nationale contre le Cancer (équipe labellisée) and the european STREP (BIOMICS). FIGURE LEGEND Figure 1. Coordinated treadmilling of distinct arrays of actin filaments in cell motility This scheme emphasizes that an overall steady state of actin assembly allows different populations of filaments to coexist with distinct dynamics and barbed end growth rates. All filaments deplymerize from their pointed ends. ADF/cofilin binding to a fraction of actin filaments enhances pointed end depolymerization and feeds a pool of ADF-ADP-G-actin that feeds the pool of ATP-G-actin. ATP-Gactin is in rapid equilibrium with thymosin ß4 and with profilin (the «profilin-actin» pool actually encompasses the pool of all complexes of actin with proteins that are functional homologs of profilin). Barbed end growth is fed by ATP-G-actin and profilin-actin in various arrays : branched filaments initiated by immobilized N-WASP-Arp2/3 and non-branched filaments processively assembled by formins. Note that a gradient of ADP-Pi-F-actin (red) to ADP-F-actin (blue) exists on filaments that assemble from G-actin and profilin-actin, while ATP hydrolysis is coupled to formin-catalyzed processive assembly of filaments from profilin-actin. Transient (N-WASP-Arp2/3-mediated) or permanent (formin-mediated) attachments of barbed ends occur at the membrane during barbed end growth. The rate of barbed end growth is controlled by proteins (weak or strong cappers, formin, ) bound to the barbed end in rapid equilibrium. 7
8 8
Two Tails of Motility in Cells. Andrea J. Liu Department of Physics & Astronomy University of Pennsylvania
Two Tails of Motility in Cells Andrea J. Liu Department of Physics & Astronomy University of Pennsylvania Kun-Chun Lee Edward Banigan Gareth Alexander Zemer Gitai Ned Wingreen Biophysics, UC Davis Physics,
More informationPolymerization/depolymerization motors
Polymerization/depolymerization motors Movement formation Kuo Lab, J.H.U. http://www.nature.com/nature/journal/v407/n6807/extref/40 71026a0_S3.mov http://www.bme.jhu.edu/~skuo/movies/macrophchase.mov http://www.bme.jhu.edu/~skuo/movies/gc_filo.mov
More informationIntroduction to Polymerization Kinetics
Introduction to Polymerization Kinetics Perspecties The cytoskeletal biopolymers are largely semi-rigid rods on typical size scale of cells. We here examine their assembly kinetics in free polymerization
More informationNeurite initiation. Neurite formation begins with a bud that sprouts from the cell body. One or several neurites can sprout at a time.
Neurite initiation. Neuronal maturation initiation f-actin polarization and maturation tubulin stage 1: "spherical" neuron stage 2: neurons extend several neurites stage 3: one neurite accelerates its
More informationMammalian twinfilin sequesters ADP-G-actin and caps filament barbed ends: implications in motility
The EMBO Journal (2006) 25, 1184 1195 & 2006 European Molecular Biology Organization All Rights Reserved 0261-4189/06 www.embojournal.org Mammalian twinfilin sequesters ADP-G-actin and caps filament barbed
More informationActin-Binding Proteins in Nerve Cell Growth Cones
J Pharmacol Sci 105, 6 11 (2007) Journal of Pharmacological Sciences 2007 The Japanese Pharmacological Society Current Perspective Actin-Binding Proteins in Nerve Cell Growth Cones Ryoki Ishikawa 1, *
More informationBE/APh161 Physical Biology of the Cell. Rob Phillips Applied Physics and Bioengineering California Institute of Technology
BE/APh161 Physical Biology of the Cell Rob Phillips Applied Physics and Bioengineering California Institute of Technology Cells Decide: Where to Go The Hunters of the Immune Response (Berman et al.) There
More informationNeurite formation & neuronal polarization
Neurite formation & neuronal polarization Paul Letourneau letou001@umn.edu Chapter 16; The Cytoskeleton; Molecular Biology of the Cell, Alberts et al. 1 An immature neuron in cell culture first sprouts
More informationNeurite formation & neuronal polarization. The cytoskeletal components of neurons have characteristic distributions and associations
Mechanisms of neuronal migration & Neurite formation & neuronal polarization Paul Letourneau letou001@umn.edu Chapter 16; The Cytoskeleton; Molecular Biology of the Cell, Alberts et al. 1 The cytoskeletal
More informationRegulation of Actin Dynamics in Rapidly Moving Cells: A Quantitative Analysis
Biophysical Journal Volume 83 September 2002 1237 1258 1237 Regulation of Actin Dynamics in Rapidly Moving Cells: A Quantitative Analysis Alex Mogilner* and Leah Edelstein-Keshet *Department of Mathematics
More informationForce Generation of Curved Actin Gels Characterized by Combined AFM-Epifluorescence Measurements
2246 Biophysical Journal Volume 98 May 21 2246 223 Force Generation of Curved Actin Gels Characterized by Combined AFM-Epifluorescence Measurements Stephan Schmidt, Emmanuèle Helfer, Marie-France Carlier,
More informationBME Engineering Molecular Cell Biology. Basics of the Diffusion Theory. The Cytoskeleton (I)
BME 42-620 Engineering Molecular Cell Biology Lecture 07: Basics of the Diffusion Theory The Cytoskeleton (I) BME42-620 Lecture 07, September 20, 2011 1 Outline Diffusion: microscopic theory Diffusion:
More informationMotility and Force Generation Based on the Dynamics of Actin Gels
Aus der Universität Bayreuth Motility and Force Generation Based on the Dynamics of Actin Gels Dissertation zur Erlangung des akademischen Grades Doktor der Naturwissenschaften Dr. rer. nat. im Fach Chemie
More informationBME Engineering Molecular Cell Biology. Review: Basics of the Diffusion Theory. The Cytoskeleton (I)
BME 42-620 Engineering Molecular Cell Biology Lecture 08: Review: Basics of the Diffusion Theory The Cytoskeleton (I) BME42-620 Lecture 08, September 22, 2011 1 Outline Background: FRAP & SPT Review: microscopic
More information1. The plasma membrane of eukaryotic cells is supported by a. actin filaments. b. microtubules. c. lamins. d. intermediate filaments.
ANALYSIS AND MODELING OF CELL MECHANICS Homework #2 (due 1/30/13) This homework involves comprehension of key biomechanical concepts of the cytoskeleton, cell-matrix adhesions, and cellcell adhesions.
More informationPNAS title page Classification: Biological Sciences, Cell Biology Title: Self-Organization of Actin Filament Orientation in the Dendritic-Nucleation /
PNAS title page Classification: Biological Sciences, Cell Biology Title: Self-Organization of Actin Filament Orientation in the Dendritic-Nucleation / Array- Treadmilling Model Authors: Thomas E. Schaus
More informationmonomer polymer polymeric network cell
3.1 Motivation 3.2 Polymerization The structural stability of the cell is provided by the cytoskeleton. Assembling and disassembling dynamically, the cytoskeleton enables cell movement through a highly
More informationForce Generation by Actin Polymerization II: The Elastic Ratchet and Tethered Filaments
Biophysical Journal Volume 84 March 2003 1591 1605 1591 Force Generation by Actin Polymerization II: The Elastic Ratchet and Tethered Filaments Alex Mogilner* and George Oster y *Department of Mathematics
More informationChapter 16. Cellular Movement: Motility and Contractility. Lectures by Kathleen Fitzpatrick Simon Fraser University Pearson Education, Inc.
Chapter 16 Cellular Movement: Motility and Contractility Lectures by Kathleen Fitzpatrick Simon Fraser University Two eukaryotic motility systems 1. Interactions between motor proteins and microtubules
More informationThe growth of a polymer against a barrier is a general
Forces generated during actin-based propulsion: A direct measurement by micromanipulation Yann Marcy, Jacques Prost, Marie-France Carlier, and Cécile Sykes Laboratoire Physico-Chimie Curie, Unité Mixte
More informationRelaxing the actin cytoskeleton for adhesion and movement with Ena/VASP
JCB: MINI-REVIEW Relaxing the actin cytoskeleton for adhesion and movement with Ena/VASP L é a Trichet, 1 C é cile Sykes, 2 and Julie Plastino 2 1 Laboratoire Mati è re et Syst è mes Complexes, Centre
More informationMolecular Transport Modulates the Adaptive Response of Branched Actin Networks to an External Force
pubs.acs.org/jpcb Molecular Transport Modulates the Adaptive Response of Branched Actin Networks to an External Force Longhua Hu and Garegin A. Papoian* Department of Chemistry and Biochemistry and Institute
More informationEffects of Nonequilibrium Processes on Actin Polymerization and Force Generation
Effects of Nonequilibrium Processes on Actin Polymerization and Force Generation Anders Carlsson Washington University in St Louis Biological cells constantly utilize the influx of energy mediated by ATP
More informationPropelling soft objects. Objets mous actifs
C. R. Physique 4 (2003) 275 280 Hydrodynamics and physics of soft objects/hydrodynamique et physique des objets mous Propelling soft objects Objets mous actifs Hakim Boukellal, Julie Plastino, Vincent
More informationThe biological motors
Motor proteins The definition of motor proteins Miklós Nyitrai, November 30, 2016 Molecular machines key to understand biological processes machines in the micro/nano-world (unidirectional steps): nm,
More informationMissing-In-Metastasis (MIM) Regulates Cell Morphology by Promoting Plasma Membrane and Actin Cytoskeleton Dynamics
Missing-In-Metastasis (MIM) Regulates Cell Morphology by Promoting Plasma Membrane and Actin Cytoskeleton Dynamics PIETA MATTILA Institute of Biotechnology and Department of Biological and Environmental
More informationBackground Physical and Chemical Properties CP is an α / β heterodimer with each subunit having a mass of ~30 kd. Individual
New Insights into Mechanism and Regulation of Actin Capping Protein John A. Cooper* and David Sept. *Department of Cell Biology, Department of Biomedical Engineering and Center for Computational Biology,
More informationCytokinesis in fission yeast: Modeling the assembly of the contractile ring
Cytokinesis in fission yeast: Modeling the assembly of the contractile ring Nikola Ojkic, Dimitrios Vavylonis Department of Physics, Lehigh University Damien Laporte, Jian-Qiu Wu Department of Molecular
More informationPart 2: Simulating cell motility using CPM
Part 2: Simulating cell motility using CPM Shape change and motility Resting cell Chemical polarization Rear : (contraction) Front : (protrusion) Shape change What are the overarching questions? How is
More informationControl of the Assembly of ATP- and ADP-Actin by Formins and Profilin
Matters Arising Control of the Assembly of ATP- and ADP-Actin by Formins and Profilin David R. Kovar, 1,5 Elizabeth S. Harris, 4 Rachel Mahaffy, 1 Henry N. Higgs, 4 and Thomas D. Pollard 1,2,3, * 1 Department
More informationWhat are some of the major questions in cell biology? (That require quantitative methods and reasoning)
Introduction What are some of the major questions in cell biology? (That require quantitative methods and reasoning) Big questions How does a cell know when to divide? How does it coordinate the process
More informationChemical aspects of the cell. Shape and structure of the cell
Chemical aspects of the cell Shape and structure of the cell Cellular composition https://www.studyblue.com/ 2 Cellular composition Set of videos with basic information: Cell characteristics: https://www.youtube.com/watch?v=urujd5nexc8
More informationThe Role of Substrate Curvature in Actin-Based Pushing Forces
Current Biology, Vol. 14, 1094 1098, June 22, 2004, 2004 Elsevier Ltd. All rights reserved. DOI 10.1016/j.cub.2004.06.023 The Role of Substrate Curvature in Actin-Based Pushing Forces Ian M. Schwartz,
More informationSELF-DIFFUSIOPHORESIS AND BIOLOGICAL MOTILITY. Department of Physics & Astronomy University of Pennsylvania
SELF-DIFFUSIOPHORESIS AND BIOLOGICAL MOTILITY Department of Physics & Astronomy University of Pennsylvania Informal Seminar, University of Oxford, 8th June 2011 ACTIN BASED PROPULSION Listeria monocytogenes
More informationreview The state of the filament Adeleke H. Aguda 1, Leslie D. Burtnick 2 & Robert C. Robinson 1+ review
Adeleke H. Aguda 1, Leslie D. Burtnick 2 & Robert. Robinson 1+ 1 Uppsala University, Uppsala, Sweden, and 2 The University of British olumbia,vancouver, British olumbia, anada Movement is a defining characteristic
More informationAnatoly B. Kolomeisky. Department of Chemistry CAN WE UNDERSTAND THE COMPLEX DYNAMICS OF MOTOR PROTEINS USING SIMPLE STOCHASTIC MODELS?
Anatoly B. Kolomeisky Department of Chemistry CAN WE UNDERSTAND THE COMPLEX DYNAMICS OF MOTOR PROTEINS USING SIMPLE STOCHASTIC MODELS? Motor Proteins Enzymes that convert the chemical energy into mechanical
More informationActive Biological Materials
Annu. Rev. Phys. Chem. 2009. 60:469 86 First published online as a Review in Advance on December 2, 2008 The Annual Review of Physical Chemistry is online at physchem.annualreviews.org This article s doi:
More informationReview Article Actin Dynamics Associated with Focal Adhesions
International Journal of Cell Biology Volume 2012, Article ID 941292, 9 pages doi:10.1155/2012/941292 Review Article Actin Dynamics Associated with Focal Adhesions Corina Ciobanasu, Bruno Faivre, and Christophe
More informationTransport of single molecules along the periodic parallel lattices with coupling
THE JOURNAL OF CHEMICAL PHYSICS 124 204901 2006 Transport of single molecules along the periodic parallel lattices with coupling Evgeny B. Stukalin The James Franck Institute The University of Chicago
More informationSUPPLEMENTARY INFORMATION
Supplementary Notes 1. Cofilin and gelsolin in actin network disassembly The ADF/cofilin family of proteins have been implicated as possible agents for spatially organized actin network disassembly. They
More informationIntroduction: actin and myosin
Introduction: actin and myosin Actin Myosin Myosin V and actin 375 residues Found in all eukaryotes Polymeric Forms track for myosin Many other cellular functions 36 nm pseudo-helical repeat Catalytic
More informationRegulation of Actin Filament Assembly by Arp2/3 Complex and Formins
Annu. Rev. Biophys. Biomol. Struct. 2007. 36:451 77 The Annual Review of Biophysics and Biomolecular Structure is online at biophys.annualreviews.org This article s doi: 10.1146/annurev.biophys.35.040405.101936
More informationActin Network Growth under Load
Biophysical Journal Volume 2 March 22 49 58 49 Actin Network Growth under Load Otger ampàs, * L. Mahadevan, and Jean-François Joanny School of Engineering and Applied Sciences, Harvard University, ambridge,
More informationActin-bound structures of Wiskott Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly
Actin-bound structures of Wiskott Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly David Chereau, Frederic Kerff, Philip Graceffa, Zenon Grabarek, Knut Langsetmo,
More informationPlasmid Segregation: Is a Total Understanding Within Reach?
Plasmid Segregation: Is a Total Understanding Within Reach? The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. Citation Published
More informationTitle: A Theoretical Approach to Actin Filament Dynamics
Editorial Manager(tm) for Journal of Statistical Physics Manuscript Draft Manuscript Number: Title: A Theoretical Approach to Actin Filament Dynamics Article Type: Special Issue Applications to Biology
More informationSeveral, non-mutually exclusive models have been proposed to
Load fluctuations drive actin network growth Joshua W. Shaevitz* and Daniel A. Fletcher Departments of *Integrative Biology and Bioengineering, University of California, Berkeley, CA 94720 Edited by James
More informationThe tendency of actin protein to spontaneously polymerize into
Actin polymerization kinetics, cap structure, and fluctuations Dimitrios Vavylonis*, Qingbo Yang, and Ben O Shaughnessy* Departments of *Chemical Engineering and Physics, Columbia University, New York,
More informationA Theoretical Approach to Actin Filament Dynamics
Journal of Statistical Physics ( C 2006 ) DOI: 10.1007/s10955-006-9204-x A Theoretical Approach to Actin Filament Dynamics Jifeng Hu, 1 Anastasios Matzavinos 1 and Hans G. Othmer 1,2 Received February
More informationJCB Article. Mechanism of filopodia initiation by reorganization of a dendritic network. The Journal of Cell Biology
JCB Article Mechanism of filopodia initiation by reorganization of a dendritic network Tatyana M. Svitkina, 1 Elena A. Bulanova, 2 Oleg Y. Chaga, 1 Danijela M. Vignjevic, 1 Shin-ichiro Kojima, 1 Jury M.
More informationSupporting Text - Jégou et al.
Supporting Text - Jégou et al. I. PAUSES DURING DEPOLYMERIZATION Pauses were observed during the ymerization of individual filaments grown from ADP-, CrATP- or MgATPactin, in the presence or in the absence
More informationActin filament branching and protrusion velocity in a simple 1D model of a motile cell
Journal of Theoretical Biology 242 (26) 265 279 www.elsevier.com/locate/yjtbi Actin filament branching and protrusion velocity in a simple 1D model of a motile cell Adriana T. Dawes a,c,, G. Bard Ermentrout
More informationMATHEMATICAL MODELS OF BRANCHING ACTIN NETWORKS: RESULTS AND METHODS.
MATHEMATICAL MODELS OF BRANCHING ACTIN NETWORKS: RESULTS AND METHODS. by Daniel B. Smith BS, University of Minnesota, 2006 MA, University of Pittsburgh, 2009 Submitted to the Graduate Faculty of the Department
More informationMuscle regulation and Actin Topics: Tropomyosin and Troponin, Actin Assembly, Actin-dependent Movement
1 Muscle regulation and Actin Topics: Tropomyosin and Troponin, Actin Assembly, Actin-dependent Movement In the last lecture, we saw that a repeating alternation between chemical (ATP hydrolysis) and vectorial
More informationBiophysik der Moleküle!
Biophysik der Moleküle!!"#$%&'()*+,-$./0()'$12$34!4! Molecular Motors:! - linear motors" 6. Dec. 2010! Muscle Motors and Cargo Transporting Motors! There are striking structural similarities but functional
More informationIn Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation
In Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation Jonathan B. Alberts,* Garrett M. Odell Open access, freely available online PLoS BIOLOGY Center for Cell Dynamics, University of
More informationA theoretical analysis of filament length fluctuations in actin and other polymers
Journal of Mathematical Biology manuscript No. (will be inserted by the editor) Jifeng Hu Hans G. Othmer A theoretical analysis of filament length fluctuations in actin and other polymers c Springer-Verlag
More informationSupplementary Figures:
Supplementary Figures: Supplementary Figure 1: Simulations with t(r) 1. (a) Snapshots of a quasi- 2D actomyosin droplet crawling along the treadmilling direction (to the right in the picture). There is
More informationQuantitative Analysis of Forces in Cells
Quantitative Analysis of Forces in Cells Anders Carlsson Washington University in St Louis Basic properties of forces in cells Measurement methods and magnitudes of particular types of forces: Polymerization
More informationThe cytoskeleton and neurite initiation
This article was downloaded by: [69.147.207.89] On: 18 January 2015, At: 16:21 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer
More informationMolecular Cell Biology 5068 In Class Exam 1 September 30, Please print your name:
Molecular Cell Biology 5068 In Class Exam 1 September 30, 2014 Exam Number: Please print your name: Instructions: Please write only on these pages, in the spaces allotted and not on the back. Write your
More information13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins
13-3. Synthesis-Secretory pathway: Sort lumenal proteins, Secrete proteins, Sort membrane proteins Molecular sorting: specific budding, vesicular transport, fusion 1. Why is this important? A. Form and
More informationRegulation of the Actin Cytoskeleton by Twinfilin
Regulation of the Actin Cytoskeleton by Twinfilin Sandra Falck Institute of Biotechnology Department of Biological and Environmental Sciences Division of Genetics Faculty of Biosciences and Viikki Graduate
More informationMechanics of Motor Proteins and the Cytoskeleton Jonathon Howard Chapter 10 Force generation 2 nd part. Andrea and Yinyun April 4 th,2012
Mechanics of Motor Proteins and the Cytoskeleton Jonathon Howard Chapter 10 Force generation 2 nd part Andrea and Yinyun April 4 th,2012 I. Equilibrium Force Reminder: http://www.youtube.com/watch?v=yt59kx_z6xm
More informationEukaryotic motile cells project finger-like protrusions, called
Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics Pavel I. Zhuravlev and Garegin A. Papoian 1 Department of Chemistry, University of North Carolina, Chapel
More informationStructural and functional aspects of gastric proton pump, H +,K + -ATPase
Kazuhiro ABE, Ph. D. E-mail:kabe@cespi.nagoya-u.ac.jp Structural and functional aspects of gastric proton pump, H +,K + -ATPase In response to food intake, ph of our stomach reaches around 1. This highly
More informationto the three terminal subunits of the filament that form the The helical actin filament is illustrated schematically in Fig.
Proc. Natl. Acad. Sci. USA Vol. 82, pp. 727-7211, November 1985 Biochemistry A model for actin polymeriation and the kinetic effects of ATP hydrolysis (ATP cap/steady state/cap-bdy interface) DOMINIQUE
More informationThree cytoskeletal polymers actin filaments,
The cytoskeleton, cellular motility and the reductionist agenda Thomas D. Pollard Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven Connecticut 06520-8103, USA (e-mail:
More informationCapping protein regulatory cycle driven by CARMIL and V-1 may promote actin network assembly at protruding edges
Capping protein regulatory cycle driven by CARMIL and V- may promote actin network assembly at protruding edges Ikuko Fujiwara a,, Kirsten Remmert a,, Grzegorz Piszczek b, and John A. Hammer a,2 a Cell
More informationCurved tails in polymerization-based bacterial motility
PHYSICAL REVIEW E, VOLUME 64, 021904 Curved tails in polymerization-based bacterial motility Andrew D. Rutenberg* Department of Physics, Dalhousie University, Halifax, NS, Canada B3H 3J5 Martin Grant Centre
More informationActo-myosin: from muscles to single molecules. Justin Molloy MRC National Institute for Medical Research LONDON
Acto-myosin: from muscles to single molecules. Justin Molloy MRC National Institute for Medical Research LONDON Energy in Biological systems: 1 Photon = 400 pn.nm 1 ATP = 100 pn.nm 1 Ion moving across
More informationMathematics of cell motility: have we got its number?
J. Math. Biol. (2009) 58:105 134 DOI 10.1007/s00285-008-0182-2 Mathematical Biology Mathematics of cell motility: have we got its number? Alex Mogilner Received: 12 July 2007 / Revised: 15 April 2008 /
More informationReview Actin comet tails, endosomes and endosymbionts
The Journal of Experimental Biology 206, 1977-1984 2003 The Company of Biologists Ltd doi:10.1242/jeb.00240 1977 Review Actin comet tails, endosomes and endosymbionts Kammy Fehrenbacher*, Thomas Huckaba*,
More informationIntracellular transport
Transport in cells Intracellular transport introduction: transport in cells, molecular players etc. cooperation of motors, forces good and bad transport regulation, traffic issues, Stefan Klumpp image
More informationSUPPLEMENTARY INFORMATION
doi:10.1038/nature09450 Supplementary Table 1 Summary of kinetic parameters. Kinetic parameters were V = V / 1 K / ATP and obtained using the relationships max ( + m [ ]) V d s /( 1/ k [ ATP] + 1 k ) =,
More informationThe neuron as a secretory cell
The neuron as a secretory cell EXOCYTOSIS ENDOCYTOSIS The secretory pathway. Transport and sorting of proteins in the secretory pathway occur as they pass through the Golgi complex before reaching the
More informationa) Write the reaction that occurs (pay attention to and label ends correctly) 5 AGCTG CAGCT > 5 AGCTG 3 3 TCGAC 5
Chem 315 Applications Practice Problem Set 1.As you learned in Chem 315, DNA higher order structure formation is a two step process. The first step, nucleation, is entropically the least favorable. The
More informationAccording to the diagram, which of the following is NOT true?
Instructions: Review Chapter 44 on muscular-skeletal systems and locomotion, and then complete the following Blackboard activity. This activity will introduce topics that will be covered in the next few
More informationThe availability of filament ends modulates actin stochastic dynamics in live plant cells
MBoC ARTICLE The availability of filament ends modulates actin stochastic dynamics in live plant cells Jiejie Li a, Benjamin H. Staiger a, Jessica L. Henty-Ridilla a, Mohamad Abu-Abied b, Einat Sadot b,
More informationMolecular Motors. Structural and Mechanistic Overview! Kimberly Nguyen - December 6, 2013! MOLECULAR MOTORS - KIMBERLY NGUYEN
Molecular Motors Structural and Mechanistic Overview!! Kimberly Nguyen - December 6, 2013!! 1 Molecular Motors: A Structure and Mechanism Overview! Introduction! Molecular motors are fundamental agents
More informationLamellipodial Contractions during Crawling and Spreading
Biophysical Journal Volume 89 September 2005 1643 1649 1643 Lamellipodial Contractions during Crawling and Spreading Charles W. Wolgemuth University of Connecticut Health Center, Department of Cell Biology,
More informationMyosin V Passing over Arp2/3 Junctions: Branching Ratio Calculated from the Elastic Lever Arm Model
Biophysical Journal Volume 94 May 28 345 342 345 Myosin V Passing over Arp2/3 Junctions: Branching Ratio Calculated from the Elastic Lever Arm Model Andrej Vilfan J. Stefan Institute, Ljubljana, Slovenia
More informationPolymerization of ADP-Actin and ATP-Actin under Sonication and Characteristics of the ATP- Actin Equilibrium Polymer*
THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 260, No. 11, Issue of June 10, pp. 6565-6571,1985 Printed in U.S.A. Polymerization of ADP-Actin and ATP-Actin under Sonication and Characteristics of the ATP- Actin
More informationLecture 6 - Intracellular compartments and transport I
01.26.11 Lecture 6 - Intracellular compartments and transport I Intracellular transport and compartments 1. Protein sorting: How proteins get to their appropriate destinations within the cell 2. Vesicular
More informationRegulation of actin catch-slip bonds with a RhoA-formin module
Regulation of actin catch-slip bonds with a RhoA-formin module Cho-yin Lee, Georgia Institute of Technology Jizhong Lou, Chinese Academy of Sciences Kuo-Kuang Wen, University of Iowa Melissa McKane, University
More informationActin Growth, Capping, and Fragmentation
Chapter 5 Actin Growth, Capping, and Fragmentation The two ends of an actin filament have different polymerization rate constants. Below we explore the consequences of this fact in simple polymerization
More informationAn Introduction to Metabolism
Chapter 8 1 An Introduction to Metabolism PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from
More informationCell Biology Review. The key components of cells that concern us are as follows: 1. Nucleus
Cell Biology Review Development involves the collective behavior and activities of cells, working together in a coordinated manner to construct an organism. As such, the regulation of development is intimately
More informationA Rickettsia WASP-like protein activates the Arp2/3 complex and mediates actin-based motility
Blackwell Science, LtdOxford, UKCMICellular Microbiology 1462-5814Blackwell Publishing Ltd, 200468761769Original ArticleR. L. Jeng et al.rickettsia RickA activates the Arp2/3 complex Cellular Microbiology
More informationREGULATION OF ORGANELLE ACIDITY
MB 137 ph REGUATION WINTER 2001 REGUATION OF ORGANEE AIDITY Introduction Intracellular compartments are largely defined by their lumenal ph. Regulation of organelle acidity is a vital aspect of cellular
More informationActive thermodynamics of cell membranes
SMR 1746-2 WORKSHOP ON DRIVEN STATES IN SOFT AND BIOLOGICAL MATTER 18-28 April 2006 Active Thermodynamics of Cell Membranes Nir GOV Department of Chemical Physics The Weizmann Institute of Science Rehovot,
More informationEmergence of Large-Scale Cell Morphology and Movement from Local Actin Filament Growth Dynamics
Emergence of Large-Scale Cell Morphology and Movement from Local Actin Filament Growth Dynamics PLoS BIOLOGY Catherine I. Lacayo 1, Zachary Pincus 1,2, Martijn M. VanDuijn 3, Cyrus A. Wilson 1, Daniel
More informationAn Introduction to Metabolism
Chapter 8 An Introduction to Metabolism PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from
More information26 Robustness in a model for calcium signal transduction dynamics
26 Robustness in a model for calcium signal transduction dynamics U. Kummer 1,G.Baier 2 and L.F. Olsen 3 1 European Media Laboratory, Villa Bosch, Schloss-Wolfsbrunnenweg 33, 69118 Heidelberg, Germany
More informationIntracellular Transport Based on Actin Polymerization
ISSN 0006-2979, Biochemistry (Moscow), 2014, Vol. 79, No. 9, pp. 917-927. Pleiades Publishing, Ltd., 2014. Original Russian Text S. Yu. Khaitlina, 2014, published in Biokhimiya, 2014, Vol. 79, No. 9, pp.
More informationChapter 1. Introduction
Chapter 1. Introduction 1a) This is an e-book about the constructive effects of thermal energy in biology at the subcellular level. Thermal energy manifests itself as thermal fluctuations, sometimes referred
More informationMolecular Dynamics Simulation and Coarse-Grained Analysis of the Arp2/3 Complex
5324 Biophysical Journal Volume 95 December 2008 5324 5333 Molecular Dynamics Simulation and Coarse-Grained Analysis of the Arp2/3 Complex Jim Pfaendtner* y and Gregory A. Voth* y *Center for Biophysical
More informationThe Flatness of Lamellipodia Explained by the Interaction Between Actin Dynamics and Membrane Deformation
The Flatness of Lamellipodia Explained by the Interaction Between Actin Dynamics and Membrane Deformation Christian Schmeiser a,b, Christoph Winkler b,1 a Faculty of Mathematics, University of Vienna,
More informationSupplemental materials: The role of filopodia in the recognition of nanotopographies
Supplemental materials: The role of filopodia in the recognition of nanotopographies Authors and affiliations: Jörg Albuschies and Viola Vogel* Department of Health Sciences and Technology ETH Zurich CH-8093
More informationReview Inside view of cell locomotion through single-molecule: fast F-/G-actin cycle and G-actin regulation of polymer restoration
62 Proc. Jpn. Acad., Ser. B 86 (2010) [Vol. 86, Review Inside view of cell locomotion through single-molecule: fast F-/G-actin cycle and G-actin regulation of polymer restoration By Naoki WATANABE, (Communicated
More information