The Expectation-Maximization Algorithm

Size: px
Start display at page:

Download "The Expectation-Maximization Algorithm"

Transcription

1 The Expectaton-Maxmaton Algorthm Charles Elan November 16, 2007 Ths chapter explans the EM algorthm at multple levels of generalty. Secton 1 gves the standard hgh-level verson of the algorthm. Secton 2 then extends ths explanaton to mae EM applcable to problems wth many tranng examples. Next, Secton 3 explans how EM can be used for fttng a mxture of arbtrary component dstrbutons. Fnally, Secton 4 explans how the EM algorthm can be vewed as a double maxmaton, and Secton 5 explans Jensen s nequalty, the basc mathematcal fact that underles all versons of the EM algorthm. At the lowest, most concrete level, there are dfferent EM algorthms for fttng many partcular probablstc models; a mxture of Gaussans s just one example. The prevous chapter descrbes EM at ths lowest level. At an ntermedate level, EM for any mxture model nvolves an E-step that computes degrees of membershp, and an M-step that does weghted maxmum lelhood; ths level s the topc of Secton 3 below. More abstractly, EM s an teratve method for maxmng lelhood; ths level s explaned n Secton 1. At an even hgher level, EM nvolves two maxmatons; ths pont of vew s explaned n Secton 4. Many other tutoral explanatons of expectaton-maxmaton exst, ncludng [Bl98, Del02, Bor04]. Three are especally recommended: [Mn98, Rus98, Roc07]. 1 The general EM algorthm To smplfy notaton, assume ntally that the entre tranng data consttute one outcome x of a random varable X. Also let θ be all the parameters of the model 1

2 p(x; θ). The goal, accordng to the prncple of maxmum lelhood, s to choose θ to maxme the lelhood functon, whch s L(θ; x) = p(x; θ). Let Z be any dscrete auxlary random varable whose dstrbuton, le that of X, s a functon of θ. Let range over the possble outcomes of Z and note that by defnton p(x; θ) = p(x, ; θ). Suppose we have a current estmate θ t for the parameters. Multplyng nsde ths sum by p( x; θ t )/p( x; θ t ) gves that the log lelhood s D = log p(x; θ) = log p(x, ; θ) p( x; θ t) p( x; θ t ). Note that p( x; θ t) = 1 and p( x; θ t ) 0 for all. Therefore D s the logarthm of a weghted sum, so we can apply Jensen s nequalty, whch says log j w jv j j w j log v j, gven j w j = 1 and each w j 0. Here, we let the sum range over the values of Z, wth the weght w j beng p( x; θ t ). We get D E = p( x; θ t ) log p(x, ; θ) p( x; θ t ). Separatng the fracton nsde the logarthm to obtan two sums gves ( ) ( ) E = p( x; θ t ) log p(x, ; θ) p( x; θ t ) log p( x; θ t ). Snce E D and we want to maxme D, consder maxmng E. The weghts p( x; θ t ) do not depend on θ, so we only need to maxme the frst sum, whch s p( x; θ t ) log p(x, ; θ). In general, the E-step of an EM algorthm s to compute p( x; θ t ) for all. The M-step s then to fnd θ to maxme p( x; θ t) log p(x, ; θ). How do we now that maxmng E actually leads to an mprovement n the lelhood? Wth θ = θ t, E = p( x; θ t ) log p(x, ; θ t) p( x; θ t ) = p( x; θ t ) log p(x; θ t ) = log p(x; θ t ) whch s the log lelhood at θ t. So any θ that maxmes E must lead to a lelhood that s better than the lelhood at θ t. 2

3 2 EM wth ndependent tranng examples The EM algorthm derved above can be extended to the case where we have a tranng set {x 1,..., x n } such that each x s ndependent. In ths case the log lelhood s D = log p(x ; θ). Let the auxlary random varables be a set {Z 1,..., Z n } such that the dstrbuton of each Z s a functon only of x and θ. By an argument smlar to above, D = log p(x, ; θ) p( x ; θ t ) p( x ; θ t ). Usng Jensen s nequalty separately for each gves D E = p( x ; θ t ) log p(x, ; θ) p( x ; θ t ). As before, to maxme E we want to maxme the sum p( x ; θ t ) log p(x, ; θ). The E-step s to compute p( x ; θ t ) for all for each. The M-step s then to fnd θ t+1 = argmax θ p( x ; θ t ) log p(x, ; θ). 3 EM for mxture models For a mxture model wth K components each s between 1 and K. The sum to maxme s p( x ; θ t )[log p(; θ) + log p(x ; θ)]. Usng the mxture model notaton from above, we have p(; θ) = α and p(x ; θ) = f(x ; λ ). The sum to maxme s then E = p( x ; θ t )[log α + log f(x ; λ )]. 3

4 For the E-step we use Bayes rule: w = p( x ; θ t ) = f(x ; λ )α j f(x ; λ j )α j. For the M-step, the two terms nsde the square bracets n E nvolve dsjont sets of parameters, so we can do two separate maxmatons. The frst one s to maxme w log α = c log α where c = w, subject to the constrant α = 1. Usng a Lagrange multpler, one can show that the soluton s α = c j c. j The second one s to maxme w log f(x ; λ ). Ths can be dvded nto K separate maxmatons, each of the form λ = argmax λ w log f(x ; λ). Each of these maxmatons s a weghted maxmum-lelhood problem, as clamed prevously. 4 EM as double maxmaton Ths secton gves a smplfed explanaton of a pont of vew on the EM algorthm due orgnally to [NH98]. The standard EM algorthm uses the weghts p( x; θ t ), but other weghts g may also be used. For any such weghts, the log lelhood can be wrtten D = log p(x; θ) = log p(x, ; θ) g g 4

5 and Jensen s nequalty s applcable f g = 1 and g 0 for all. In ths case D E = p(x, ; θ) g log. g The overall goal s to maxme D, so consder choosng g and choosng θ to maxme E. However, rather than choosng g and θ smultaneously, suppose we choose g frst based on θ = θ t, and then choose θ based on the new g. The frst maxmaton s of E = g (log p(x, ; θ t ) log g ). wth θ t fxed. Introducng a Lagrange multpler λ for the constrant g = 1 gves the unconstraned objectve functon F = λ(1 g ) + g (log p(x, ; θ t ) log g ). The partal dervatves are F g = λ + ( 1) + log p(x, ; θ t ) log g. Solvng for when the partal dervatves equal ero yelds The constrant g = 1 gves log g = constant + log p(x, ; θ t ). g = p(x, ; θ t) p(x, ; θ t) = p(x, ; θ t) = p( x; θ t ) p(x; θ t ) whch are the weghts used n the standard EM algorthm. As shown above, wth these weghts and wth θ = θ t, E = log p(x; θ t ) whch s the log lelhood D at θ t. In the double maxmaton verson of EM, both the E and M steps are maxmatons. The E-step s to solve whle the M-step solves w = argmax g g log p(x, ; θ t) g θ t+1 = argmax θ w log p(x, ; θ). 5

6 5 Jensen s nequalty The mathematcal fact on whch the EM algorthm s based s nown as Jensen s nequalty. It s the followng lemma. Lemma: Suppose the weghts w j are nonnegatve and sum to one, and let each x j be any real number for j = 1 to j = n. Let f : R R be any concave functon. Then f( w j x j ) w j f(x j ). j j Proof: The proof s by nducton on n. For the base case n = 2, the defnton of beng concave says that f(wa + (1 w)b) wf(a) + (1 w)f(b). The logarthm functon s concave, so Jensen s nequalty apples to t. References [Bl98] Jeff A. Blmes. A gentle tutoral of the EM algorthm and ts applcaton to parameter estmaton for gaussan mxture and hdden marov models. Techncal Report TR , U. C. Bereley, Aprl [Bor04] Sean Borman. The expectaton maxmaton algorthm: A short tutoral. Unpublshed paper avalable at [Del02] Fran Dellaert. The expectaton maxmaton algorthm. Techncal Report GIT-GVU-02-20, Georga Insttute of Technology, [Mn98] Thomas P. Mna. Expectaton-maxmaton as lower bound maxmaton. Unpublshed paper avalable at mcrosoft.com/ mna, [NH98] Radford M. Neal and Geoffrey E. Hnton. A vew of the EM algorthm that justfes ncremental, sparse, and other varants. In Proceedngs of the NATO Advanced Study Insttute on Learnng n graphcal models, pages , Norwell, MA, USA, Kluwer Academc Publshers. 6

7 [Roc07] Alexs Roche. EM algorthms and varants: An nformal tutoral. Unpublshed paper avalable at people/roche/, [Rus98] Stuart Russell. The EM algorthm. Unpublshed note avalable at russell/classes/- cs281/s98/em.ps,

Finding Dense Subgraphs in G(n, 1/2)

Finding Dense Subgraphs in G(n, 1/2) Fndng Dense Subgraphs n Gn, 1/ Atsh Das Sarma 1, Amt Deshpande, and Rav Kannan 1 Georga Insttute of Technology,atsh@cc.gatech.edu Mcrosoft Research-Bangalore,amtdesh,annan@mcrosoft.com Abstract. Fndng

More information

MATH 829: Introduction to Data Mining and Analysis The EM algorithm (part 2)

MATH 829: Introduction to Data Mining and Analysis The EM algorithm (part 2) 1/16 MATH 829: Introducton to Data Mnng and Analyss The EM algorthm (part 2) Domnque Gullot Departments of Mathematcal Scences Unversty of Delaware Aprl 20, 2016 Recall 2/16 We are gven ndependent observatons

More information

Course 395: Machine Learning - Lectures

Course 395: Machine Learning - Lectures Course 395: Machne Learnng - Lectures Lecture 1-2: Concept Learnng (M. Pantc Lecture 3-4: Decson Trees & CC Intro (M. Pantc Lecture 5-6: Artfcal Neural Networks (S.Zaferou Lecture 7-8: Instance ased Learnng

More information

Lecture Notes on Linear Regression

Lecture Notes on Linear Regression Lecture Notes on Lnear Regresson Feng L fl@sdueducn Shandong Unversty, Chna Lnear Regresson Problem In regresson problem, we am at predct a contnuous target value gven an nput feature vector We assume

More information

EM and Structure Learning

EM and Structure Learning EM and Structure Learnng Le Song Machne Learnng II: Advanced Topcs CSE 8803ML, Sprng 2012 Partally observed graphcal models Mxture Models N(μ 1, Σ 1 ) Z X N N(μ 2, Σ 2 ) 2 Gaussan mxture model Consder

More information

xp(x µ) = 0 p(x = 0 µ) + 1 p(x = 1 µ) = µ

xp(x µ) = 0 p(x = 0 µ) + 1 p(x = 1 µ) = µ CSE 455/555 Sprng 2013 Homework 7: Parametrc Technques Jason J. Corso Computer Scence and Engneerng SUY at Buffalo jcorso@buffalo.edu Solutons by Yngbo Zhou Ths assgnment does not need to be submtted and

More information

Hidden Markov Models & The Multivariate Gaussian (10/26/04)

Hidden Markov Models & The Multivariate Gaussian (10/26/04) CS281A/Stat241A: Statstcal Learnng Theory Hdden Markov Models & The Multvarate Gaussan (10/26/04) Lecturer: Mchael I. Jordan Scrbes: Jonathan W. Hu 1 Hdden Markov Models As a bref revew, hdden Markov models

More information

Lecture 10 Support Vector Machines II

Lecture 10 Support Vector Machines II Lecture 10 Support Vector Machnes II 22 February 2016 Taylor B. Arnold Yale Statstcs STAT 365/665 1/28 Notes: Problem 3 s posted and due ths upcomng Frday There was an early bug n the fake-test data; fxed

More information

Chapter 12. Ordinary Differential Equation Boundary Value (BV) Problems

Chapter 12. Ordinary Differential Equation Boundary Value (BV) Problems Chapter. Ordnar Dfferental Equaton Boundar Value (BV) Problems In ths chapter we wll learn how to solve ODE boundar value problem. BV ODE s usuall gven wth x beng the ndependent space varable. p( x) q(

More information

NUMERICAL DIFFERENTIATION

NUMERICAL DIFFERENTIATION NUMERICAL DIFFERENTIATION 1 Introducton Dfferentaton s a method to compute the rate at whch a dependent output y changes wth respect to the change n the ndependent nput x. Ths rate of change s called the

More information

Lecture 10 Support Vector Machines. Oct

Lecture 10 Support Vector Machines. Oct Lecture 10 Support Vector Machnes Oct - 20-2008 Lnear Separators Whch of the lnear separators s optmal? Concept of Margn Recall that n Perceptron, we learned that the convergence rate of the Perceptron

More information

Hidden Markov Models

Hidden Markov Models Hdden Markov Models Namrata Vaswan, Iowa State Unversty Aprl 24, 204 Hdden Markov Model Defntons and Examples Defntons:. A hdden Markov model (HMM) refers to a set of hdden states X 0, X,..., X t,...,

More information

Using T.O.M to Estimate Parameter of distributions that have not Single Exponential Family

Using T.O.M to Estimate Parameter of distributions that have not Single Exponential Family IOSR Journal of Mathematcs IOSR-JM) ISSN: 2278-5728. Volume 3, Issue 3 Sep-Oct. 202), PP 44-48 www.osrjournals.org Usng T.O.M to Estmate Parameter of dstrbutons that have not Sngle Exponental Famly Jubran

More information

Assortment Optimization under MNL

Assortment Optimization under MNL Assortment Optmzaton under MNL Haotan Song Aprl 30, 2017 1 Introducton The assortment optmzaton problem ams to fnd the revenue-maxmzng assortment of products to offer when the prces of products are fxed.

More information

CS 2750 Machine Learning. Lecture 5. Density estimation. CS 2750 Machine Learning. Announcements

CS 2750 Machine Learning. Lecture 5. Density estimation. CS 2750 Machine Learning. Announcements CS 750 Machne Learnng Lecture 5 Densty estmaton Mlos Hauskrecht mlos@cs.ptt.edu 539 Sennott Square CS 750 Machne Learnng Announcements Homework Due on Wednesday before the class Reports: hand n before

More information

Eigenvalues of Random Graphs

Eigenvalues of Random Graphs Spectral Graph Theory Lecture 2 Egenvalues of Random Graphs Danel A. Spelman November 4, 202 2. Introducton In ths lecture, we consder a random graph on n vertces n whch each edge s chosen to be n the

More information

Module 3 LOSSY IMAGE COMPRESSION SYSTEMS. Version 2 ECE IIT, Kharagpur

Module 3 LOSSY IMAGE COMPRESSION SYSTEMS. Version 2 ECE IIT, Kharagpur Module 3 LOSSY IMAGE COMPRESSION SYSTEMS Verson ECE IIT, Kharagpur Lesson 6 Theory of Quantzaton Verson ECE IIT, Kharagpur Instructonal Objectves At the end of ths lesson, the students should be able to:

More information

Problem Set 9 Solutions

Problem Set 9 Solutions Desgn and Analyss of Algorthms May 4, 2015 Massachusetts Insttute of Technology 6.046J/18.410J Profs. Erk Demane, Srn Devadas, and Nancy Lynch Problem Set 9 Solutons Problem Set 9 Solutons Ths problem

More information

A Hybrid Variational Iteration Method for Blasius Equation

A Hybrid Variational Iteration Method for Blasius Equation Avalable at http://pvamu.edu/aam Appl. Appl. Math. ISSN: 1932-9466 Vol. 10, Issue 1 (June 2015), pp. 223-229 Applcatons and Appled Mathematcs: An Internatonal Journal (AAM) A Hybrd Varatonal Iteraton Method

More information

Linear Approximation with Regularization and Moving Least Squares

Linear Approximation with Regularization and Moving Least Squares Lnear Approxmaton wth Regularzaton and Movng Least Squares Igor Grešovn May 007 Revson 4.6 (Revson : March 004). 5 4 3 0.5 3 3.5 4 Contents: Lnear Fttng...4. Weghted Least Squares n Functon Approxmaton...

More information

Logistic Regression. CAP 5610: Machine Learning Instructor: Guo-Jun QI

Logistic Regression. CAP 5610: Machine Learning Instructor: Guo-Jun QI Logstc Regresson CAP 561: achne Learnng Instructor: Guo-Jun QI Bayes Classfer: A Generatve model odel the posteror dstrbuton P(Y X) Estmate class-condtonal dstrbuton P(X Y) for each Y Estmate pror dstrbuton

More information

P exp(tx) = 1 + t 2k M 2k. k N

P exp(tx) = 1 + t 2k M 2k. k N 1. Subgaussan tals Defnton. Say that a random varable X has a subgaussan dstrbuton wth scale factor σ< f P exp(tx) exp(σ 2 t 2 /2) for all real t. For example, f X s dstrbuted N(,σ 2 ) then t s subgaussan.

More information

Differentiating Gaussian Processes

Differentiating Gaussian Processes Dfferentatng Gaussan Processes Andrew McHutchon Aprl 17, 013 1 Frst Order Dervatve of the Posteror Mean The posteror mean of a GP s gven by, f = x, X KX, X 1 y x, X α 1 Only the x, X term depends on the

More information

8 : Learning in Fully Observed Markov Networks. 1 Why We Need to Learn Undirected Graphical Models. 2 Structural Learning for Completely Observed MRF

8 : Learning in Fully Observed Markov Networks. 1 Why We Need to Learn Undirected Graphical Models. 2 Structural Learning for Completely Observed MRF 10-708: Probablstc Graphcal Models 10-708, Sprng 2014 8 : Learnng n Fully Observed Markov Networks Lecturer: Erc P. Xng Scrbes: Meng Song, L Zhou 1 Why We Need to Learn Undrected Graphcal Models In the

More information

18.1 Introduction and Recap

18.1 Introduction and Recap CS787: Advanced Algorthms Scrbe: Pryananda Shenoy and Shjn Kong Lecturer: Shuch Chawla Topc: Streamng Algorthmscontnued) Date: 0/26/2007 We contnue talng about streamng algorthms n ths lecture, ncludng

More information

Lecture 12: Discrete Laplacian

Lecture 12: Discrete Laplacian Lecture 12: Dscrete Laplacan Scrbe: Tanye Lu Our goal s to come up wth a dscrete verson of Laplacan operator for trangulated surfaces, so that we can use t n practce to solve related problems We are mostly

More information

Semi-Supervised Learning

Semi-Supervised Learning Sem-Supervsed Learnng Consder the problem of Prepostonal Phrase Attachment. Buy car wth money ; buy car wth wheel There are several ways to generate features. Gven the lmted representaton, we can assume

More information

For now, let us focus on a specific model of neurons. These are simplified from reality but can achieve remarkable results.

For now, let us focus on a specific model of neurons. These are simplified from reality but can achieve remarkable results. Neural Networks : Dervaton compled by Alvn Wan from Professor Jtendra Malk s lecture Ths type of computaton s called deep learnng and s the most popular method for many problems, such as computer vson

More information

ECE559VV Project Report

ECE559VV Project Report ECE559VV Project Report (Supplementary Notes Loc Xuan Bu I. MAX SUM-RATE SCHEDULING: THE UPLINK CASE We have seen (n the presentaton that, for downlnk (broadcast channels, the strategy maxmzng the sum-rate

More information

10-701/ Machine Learning, Fall 2005 Homework 3

10-701/ Machine Learning, Fall 2005 Homework 3 10-701/15-781 Machne Learnng, Fall 2005 Homework 3 Out: 10/20/05 Due: begnnng of the class 11/01/05 Instructons Contact questons-10701@autonlaborg for queston Problem 1 Regresson and Cross-valdaton [40

More information

E Tail Inequalities. E.1 Markov s Inequality. Non-Lecture E: Tail Inequalities

E Tail Inequalities. E.1 Markov s Inequality. Non-Lecture E: Tail Inequalities Algorthms Non-Lecture E: Tal Inequaltes If you hold a cat by the tal you learn thngs you cannot learn any other way. Mar Twan E Tal Inequaltes The smple recursve structure of sp lsts made t relatvely easy

More information

APPROXIMATE PRICES OF BASKET AND ASIAN OPTIONS DUPONT OLIVIER. Premia 14

APPROXIMATE PRICES OF BASKET AND ASIAN OPTIONS DUPONT OLIVIER. Premia 14 APPROXIMAE PRICES OF BASKE AND ASIAN OPIONS DUPON OLIVIER Prema 14 Contents Introducton 1 1. Framewor 1 1.1. Baset optons 1.. Asan optons. Computng the prce 3. Lower bound 3.1. Closed formula for the prce

More information

Expected Value and Variance

Expected Value and Variance MATH 38 Expected Value and Varance Dr. Neal, WKU We now shall dscuss how to fnd the average and standard devaton of a random varable X. Expected Value Defnton. The expected value (or average value, or

More information

e - c o m p a n i o n

e - c o m p a n i o n OPERATIONS RESEARCH http://dxdoorg/0287/opre007ec e - c o m p a n o n ONLY AVAILABLE IN ELECTRONIC FORM 202 INFORMS Electronc Companon Generalzed Quantty Competton for Multple Products and Loss of Effcency

More information

Stanford University CS359G: Graph Partitioning and Expanders Handout 4 Luca Trevisan January 13, 2011

Stanford University CS359G: Graph Partitioning and Expanders Handout 4 Luca Trevisan January 13, 2011 Stanford Unversty CS359G: Graph Parttonng and Expanders Handout 4 Luca Trevsan January 3, 0 Lecture 4 In whch we prove the dffcult drecton of Cheeger s nequalty. As n the past lectures, consder an undrected

More information

princeton univ. F 17 cos 521: Advanced Algorithm Design Lecture 7: LP Duality Lecturer: Matt Weinberg

princeton univ. F 17 cos 521: Advanced Algorithm Design Lecture 7: LP Duality Lecturer: Matt Weinberg prnceton unv. F 17 cos 521: Advanced Algorthm Desgn Lecture 7: LP Dualty Lecturer: Matt Wenberg Scrbe: LP Dualty s an extremely useful tool for analyzng structural propertes of lnear programs. Whle there

More information

The Geometry of Logit and Probit

The Geometry of Logit and Probit The Geometry of Logt and Probt Ths short note s meant as a supplement to Chapters and 3 of Spatal Models of Parlamentary Votng and the notaton and reference to fgures n the text below s to those two chapters.

More information

COS 511: Theoretical Machine Learning. Lecturer: Rob Schapire Lecture # 15 Scribe: Jieming Mao April 1, 2013

COS 511: Theoretical Machine Learning. Lecturer: Rob Schapire Lecture # 15 Scribe: Jieming Mao April 1, 2013 COS 511: heoretcal Machne Learnng Lecturer: Rob Schapre Lecture # 15 Scrbe: Jemng Mao Aprl 1, 013 1 Bref revew 1.1 Learnng wth expert advce Last tme, we started to talk about learnng wth expert advce.

More information

2E Pattern Recognition Solutions to Introduction to Pattern Recognition, Chapter 2: Bayesian pattern classification

2E Pattern Recognition Solutions to Introduction to Pattern Recognition, Chapter 2: Bayesian pattern classification E395 - Pattern Recognton Solutons to Introducton to Pattern Recognton, Chapter : Bayesan pattern classfcaton Preface Ths document s a soluton manual for selected exercses from Introducton to Pattern Recognton

More information

Lecture 3. Ax x i a i. i i

Lecture 3. Ax x i a i. i i 18.409 The Behavor of Algorthms n Practce 2/14/2 Lecturer: Dan Spelman Lecture 3 Scrbe: Arvnd Sankar 1 Largest sngular value In order to bound the condton number, we need an upper bound on the largest

More information

Generalized Linear Methods

Generalized Linear Methods Generalzed Lnear Methods 1 Introducton In the Ensemble Methods the general dea s that usng a combnaton of several weak learner one could make a better learner. More formally, assume that we have a set

More information

Maximum Likelihood Estimation

Maximum Likelihood Estimation Maxmum Lkelhood Estmaton INFO-2301: Quanttatve Reasonng 2 Mchael Paul and Jordan Boyd-Graber MARCH 7, 2017 INFO-2301: Quanttatve Reasonng 2 Paul and Boyd-Graber Maxmum Lkelhood Estmaton 1 of 9 Why MLE?

More information

Errors for Linear Systems

Errors for Linear Systems Errors for Lnear Systems When we solve a lnear system Ax b we often do not know A and b exactly, but have only approxmatons  and ˆb avalable. Then the best thng we can do s to solve ˆx ˆb exactly whch

More information

9 : Learning Partially Observed GM : EM Algorithm

9 : Learning Partially Observed GM : EM Algorithm 10-708: Probablstc Graphcal Models 10-708, Sprng 2012 9 : Learnng Partally Observed GM : EM Algorthm Lecturer: Erc P. Xng Scrbes: Mrnmaya Sachan, Phan Gadde, Vswanathan Srpradha 1 Introducton So far n

More information

Clustering gene expression data & the EM algorithm

Clustering gene expression data & the EM algorithm CG, Fall 2011-12 Clusterng gene expresson data & the EM algorthm CG 08 Ron Shamr 1 How Gene Expresson Data Looks Entres of the Raw Data matrx: Rato values Absolute values Row = gene s expresson pattern

More information

A linear imaging system with white additive Gaussian noise on the observed data is modeled as follows:

A linear imaging system with white additive Gaussian noise on the observed data is modeled as follows: Supplementary Note Mathematcal bacground A lnear magng system wth whte addtve Gaussan nose on the observed data s modeled as follows: X = R ϕ V + G, () where X R are the expermental, two-dmensonal proecton

More information

THE SUMMATION NOTATION Ʃ

THE SUMMATION NOTATION Ʃ Sngle Subscrpt otaton THE SUMMATIO OTATIO Ʃ Most of the calculatons we perform n statstcs are repettve operatons on lsts of numbers. For example, we compute the sum of a set of numbers, or the sum of the

More information

MATH 241B FUNCTIONAL ANALYSIS - NOTES EXAMPLES OF C ALGEBRAS

MATH 241B FUNCTIONAL ANALYSIS - NOTES EXAMPLES OF C ALGEBRAS MATH 241B FUNCTIONAL ANALYSIS - NOTES EXAMPLES OF C ALGEBRAS These are nformal notes whch cover some of the materal whch s not n the course book. The man purpose s to gve a number of nontrval examples

More information

More metrics on cartesian products

More metrics on cartesian products More metrcs on cartesan products If (X, d ) are metrc spaces for 1 n, then n Secton II4 of the lecture notes we defned three metrcs on X whose underlyng topologes are the product topology The purpose of

More information

Foundations of Arithmetic

Foundations of Arithmetic Foundatons of Arthmetc Notaton We shall denote the sum and product of numbers n the usual notaton as a 2 + a 2 + a 3 + + a = a, a 1 a 2 a 3 a = a The notaton a b means a dvdes b,.e. ac = b where c s an

More information

Expectation Maximization Mixture Models HMMs

Expectation Maximization Mixture Models HMMs -755 Machne Learnng for Sgnal Processng Mture Models HMMs Class 9. 2 Sep 200 Learnng Dstrbutons for Data Problem: Gven a collecton of eamples from some data, estmate ts dstrbuton Basc deas of Mamum Lelhood

More information

CHAPTER 14 GENERAL PERTURBATION THEORY

CHAPTER 14 GENERAL PERTURBATION THEORY CHAPTER 4 GENERAL PERTURBATION THEORY 4 Introducton A partcle n orbt around a pont mass or a sphercally symmetrc mass dstrbuton s movng n a gravtatonal potental of the form GM / r In ths potental t moves

More information

An Experiment/Some Intuition (Fall 2006): Lecture 18 The EM Algorithm heads coin 1 tails coin 2 Overview Maximum Likelihood Estimation

An Experiment/Some Intuition (Fall 2006): Lecture 18 The EM Algorithm heads coin 1 tails coin 2 Overview Maximum Likelihood Estimation An Experment/Some Intuton I have three cons n my pocket, 6.864 (Fall 2006): Lecture 18 The EM Algorthm Con 0 has probablty λ of heads; Con 1 has probablty p 1 of heads; Con 2 has probablty p 2 of heads

More information

Machine learning: Density estimation

Machine learning: Density estimation CS 70 Foundatons of AI Lecture 3 Machne learnng: ensty estmaton Mlos Hauskrecht mlos@cs.ptt.edu 539 Sennott Square ata: ensty estmaton {.. n} x a vector of attrbute values Objectve: estmate the model of

More information

Finite Mixture Models and Expectation Maximization. Most slides are from: Dr. Mario Figueiredo, Dr. Anil Jain and Dr. Rong Jin

Finite Mixture Models and Expectation Maximization. Most slides are from: Dr. Mario Figueiredo, Dr. Anil Jain and Dr. Rong Jin Fnte Mxture Models and Expectaton Maxmzaton Most sldes are from: Dr. Maro Fgueredo, Dr. Anl Jan and Dr. Rong Jn Recall: The Supervsed Learnng Problem Gven a set of n samples X {(x, y )},,,n Chapter 3 of

More information

Yong Joon Ryang. 1. Introduction Consider the multicommodity transportation problem with convex quadratic cost function. 1 2 (x x0 ) T Q(x x 0 )

Yong Joon Ryang. 1. Introduction Consider the multicommodity transportation problem with convex quadratic cost function. 1 2 (x x0 ) T Q(x x 0 ) Kangweon-Kyungk Math. Jour. 4 1996), No. 1, pp. 7 16 AN ITERATIVE ROW-ACTION METHOD FOR MULTICOMMODITY TRANSPORTATION PROBLEMS Yong Joon Ryang Abstract. The optmzaton problems wth quadratc constrants often

More information

Space of ML Problems. CSE 473: Artificial Intelligence. Parameter Estimation and Bayesian Networks. Learning Topics

Space of ML Problems. CSE 473: Artificial Intelligence. Parameter Estimation and Bayesian Networks. Learning Topics /7/7 CSE 73: Artfcal Intellgence Bayesan - Learnng Deter Fox Sldes adapted from Dan Weld, Jack Breese, Dan Klen, Daphne Koller, Stuart Russell, Andrew Moore & Luke Zettlemoyer What s Beng Learned? Space

More information

Lecture 3: Probability Distributions

Lecture 3: Probability Distributions Lecture 3: Probablty Dstrbutons Random Varables Let us begn by defnng a sample space as a set of outcomes from an experment. We denote ths by S. A random varable s a functon whch maps outcomes nto the

More information

Probability Density Function Estimation by different Methods

Probability Density Function Estimation by different Methods EEE 739Q SPRIG 00 COURSE ASSIGMET REPORT Probablty Densty Functon Estmaton by dfferent Methods Vas Chandraant Rayar Abstract The am of the assgnment was to estmate the probablty densty functon (PDF of

More information

Appendix for Causal Interaction in Factorial Experiments: Application to Conjoint Analysis

Appendix for Causal Interaction in Factorial Experiments: Application to Conjoint Analysis A Appendx for Causal Interacton n Factoral Experments: Applcaton to Conjont Analyss Mathematcal Appendx: Proofs of Theorems A. Lemmas Below, we descrbe all the lemmas, whch are used to prove the man theorems

More information

3.1 ML and Empirical Distribution

3.1 ML and Empirical Distribution 67577 Intro. to Machne Learnng Fall semester, 2008/9 Lecture 3: Maxmum Lkelhood/ Maxmum Entropy Dualty Lecturer: Amnon Shashua Scrbe: Amnon Shashua 1 In the prevous lecture we defned the prncple of Maxmum

More information

XII.3 The EM (Expectation-Maximization) Algorithm

XII.3 The EM (Expectation-Maximization) Algorithm XII.3 The EM (Expectaton-Maxzaton) Algorth Toshnor Munaata 3/7/06 The EM algorth s a technque to deal wth varous types of ncoplete data or hdden varables. It can be appled to a wde range of learnng probles

More information

Some modelling aspects for the Matlab implementation of MMA

Some modelling aspects for the Matlab implementation of MMA Some modellng aspects for the Matlab mplementaton of MMA Krster Svanberg krlle@math.kth.se Optmzaton and Systems Theory Department of Mathematcs KTH, SE 10044 Stockholm September 2004 1. Consdered optmzaton

More information

Analysis of Discrete Time Queues (Section 4.6)

Analysis of Discrete Time Queues (Section 4.6) Analyss of Dscrete Tme Queues (Secton 4.6) Copyrght 2002, Sanjay K. Bose Tme axs dvded nto slots slot slot boundares Arrvals can only occur at slot boundares Servce to a job can only start at a slot boundary

More information

Lectures - Week 4 Matrix norms, Conditioning, Vector Spaces, Linear Independence, Spanning sets and Basis, Null space and Range of a Matrix

Lectures - Week 4 Matrix norms, Conditioning, Vector Spaces, Linear Independence, Spanning sets and Basis, Null space and Range of a Matrix Lectures - Week 4 Matrx norms, Condtonng, Vector Spaces, Lnear Independence, Spannng sets and Bass, Null space and Range of a Matrx Matrx Norms Now we turn to assocatng a number to each matrx. We could

More information

Outline. Bayesian Networks: Maximum Likelihood Estimation and Tree Structure Learning. Our Model and Data. Outline

Outline. Bayesian Networks: Maximum Likelihood Estimation and Tree Structure Learning. Our Model and Data. Outline Outlne Bayesan Networks: Maxmum Lkelhood Estmaton and Tree Structure Learnng Huzhen Yu janey.yu@cs.helsnk.f Dept. Computer Scence, Unv. of Helsnk Probablstc Models, Sprng, 200 Notces: I corrected a number

More information

Solution Thermodynamics

Solution Thermodynamics Soluton hermodynamcs usng Wagner Notaton by Stanley. Howard Department of aterals and etallurgcal Engneerng South Dakota School of nes and echnology Rapd Cty, SD 57701 January 7, 001 Soluton hermodynamcs

More information

Another converse of Jensen s inequality

Another converse of Jensen s inequality Another converse of Jensen s nequalty Slavko Smc Abstract. We gve the best possble global bounds for a form of dscrete Jensen s nequalty. By some examples ts frutfulness s shown. 1. Introducton Throughout

More information

EEE 241: Linear Systems

EEE 241: Linear Systems EEE : Lnear Systems Summary #: Backpropagaton BACKPROPAGATION The perceptron rule as well as the Wdrow Hoff learnng were desgned to tran sngle layer networks. They suffer from the same dsadvantage: they

More information

CSci 6974 and ECSE 6966 Math. Tech. for Vision, Graphics and Robotics Lecture 21, April 17, 2006 Estimating A Plane Homography

CSci 6974 and ECSE 6966 Math. Tech. for Vision, Graphics and Robotics Lecture 21, April 17, 2006 Estimating A Plane Homography CSc 6974 and ECSE 6966 Math. Tech. for Vson, Graphcs and Robotcs Lecture 21, Aprl 17, 2006 Estmatng A Plane Homography Overvew We contnue wth a dscusson of the major ssues, usng estmaton of plane projectve

More information

Temperature. Chapter Heat Engine

Temperature. Chapter Heat Engine Chapter 3 Temperature In prevous chapters of these notes we ntroduced the Prncple of Maxmum ntropy as a technque for estmatng probablty dstrbutons consstent wth constrants. In Chapter 9 we dscussed the

More information

Complete subgraphs in multipartite graphs

Complete subgraphs in multipartite graphs Complete subgraphs n multpartte graphs FLORIAN PFENDER Unverstät Rostock, Insttut für Mathematk D-18057 Rostock, Germany Floran.Pfender@un-rostock.de Abstract Turán s Theorem states that every graph G

More information

11 Tail Inequalities Markov s Inequality. Lecture 11: Tail Inequalities [Fa 13]

11 Tail Inequalities Markov s Inequality. Lecture 11: Tail Inequalities [Fa 13] Algorthms Lecture 11: Tal Inequaltes [Fa 13] If you hold a cat by the tal you learn thngs you cannot learn any other way. Mark Twan 11 Tal Inequaltes The smple recursve structure of skp lsts made t relatvely

More information

ADVANCED MACHINE LEARNING ADVANCED MACHINE LEARNING

ADVANCED MACHINE LEARNING ADVANCED MACHINE LEARNING 1 ADVANCED ACHINE LEARNING ADVANCED ACHINE LEARNING Non-lnear regresson technques 2 ADVANCED ACHINE LEARNING Regresson: Prncple N ap N-dm. nput x to a contnuous output y. Learn a functon of the type: N

More information

Perron Vectors of an Irreducible Nonnegative Interval Matrix

Perron Vectors of an Irreducible Nonnegative Interval Matrix Perron Vectors of an Irreducble Nonnegatve Interval Matrx Jr Rohn August 4 2005 Abstract As s well known an rreducble nonnegatve matrx possesses a unquely determned Perron vector. As the man result of

More information

TAIL BOUNDS FOR SUMS OF GEOMETRIC AND EXPONENTIAL VARIABLES

TAIL BOUNDS FOR SUMS OF GEOMETRIC AND EXPONENTIAL VARIABLES TAIL BOUNDS FOR SUMS OF GEOMETRIC AND EXPONENTIAL VARIABLES SVANTE JANSON Abstract. We gve explct bounds for the tal probabltes for sums of ndependent geometrc or exponental varables, possbly wth dfferent

More information

Lecture 4: Universal Hash Functions/Streaming Cont d

Lecture 4: Universal Hash Functions/Streaming Cont d CSE 5: Desgn and Analyss of Algorthms I Sprng 06 Lecture 4: Unversal Hash Functons/Streamng Cont d Lecturer: Shayan Oves Gharan Aprl 6th Scrbe: Jacob Schreber Dsclamer: These notes have not been subjected

More information

Supplement to Clustering with Statistical Error Control

Supplement to Clustering with Statistical Error Control Supplement to Clusterng wth Statstcal Error Control Mchael Vogt Unversty of Bonn Matthas Schmd Unversty of Bonn In ths supplement, we provde the proofs that are omtted n the paper. In partcular, we derve

More information

Feature Selection: Part 1

Feature Selection: Part 1 CSE 546: Machne Learnng Lecture 5 Feature Selecton: Part 1 Instructor: Sham Kakade 1 Regresson n the hgh dmensonal settng How do we learn when the number of features d s greater than the sample sze n?

More information

Estimation: Part 2. Chapter GREG estimation

Estimation: Part 2. Chapter GREG estimation Chapter 9 Estmaton: Part 2 9. GREG estmaton In Chapter 8, we have seen that the regresson estmator s an effcent estmator when there s a lnear relatonshp between y and x. In ths chapter, we generalzed the

More information

Supplementary Notes for Chapter 9 Mixture Thermodynamics

Supplementary Notes for Chapter 9 Mixture Thermodynamics Supplementary Notes for Chapter 9 Mxture Thermodynamcs Key ponts Nne major topcs of Chapter 9 are revewed below: 1. Notaton and operatonal equatons for mxtures 2. PVTN EOSs for mxtures 3. General effects

More information

College of Computer & Information Science Fall 2009 Northeastern University 20 October 2009

College of Computer & Information Science Fall 2009 Northeastern University 20 October 2009 College of Computer & Informaton Scence Fall 2009 Northeastern Unversty 20 October 2009 CS7880: Algorthmc Power Tools Scrbe: Jan Wen and Laura Poplawsk Lecture Outlne: Prmal-dual schema Network Desgn:

More information

PHYS 705: Classical Mechanics. Calculus of Variations II

PHYS 705: Classical Mechanics. Calculus of Variations II 1 PHYS 705: Classcal Mechancs Calculus of Varatons II 2 Calculus of Varatons: Generalzaton (no constrant yet) Suppose now that F depends on several dependent varables : We need to fnd such that has a statonary

More information

COS 521: Advanced Algorithms Game Theory and Linear Programming

COS 521: Advanced Algorithms Game Theory and Linear Programming COS 521: Advanced Algorthms Game Theory and Lnear Programmng Moses Charkar February 27, 2013 In these notes, we ntroduce some basc concepts n game theory and lnear programmng (LP). We show a connecton

More information

MMA and GCMMA two methods for nonlinear optimization

MMA and GCMMA two methods for nonlinear optimization MMA and GCMMA two methods for nonlnear optmzaton Krster Svanberg Optmzaton and Systems Theory, KTH, Stockholm, Sweden. krlle@math.kth.se Ths note descrbes the algorthms used n the author s 2007 mplementatons

More information

find (x): given element x, return the canonical element of the set containing x;

find (x): given element x, return the canonical element of the set containing x; COS 43 Sprng, 009 Dsjont Set Unon Problem: Mantan a collecton of dsjont sets. Two operatons: fnd the set contanng a gven element; unte two sets nto one (destructvely). Approach: Canoncal element method:

More information

Solving Nonlinear Differential Equations by a Neural Network Method

Solving Nonlinear Differential Equations by a Neural Network Method Solvng Nonlnear Dfferental Equatons by a Neural Network Method Luce P. Aarts and Peter Van der Veer Delft Unversty of Technology, Faculty of Cvlengneerng and Geoscences, Secton of Cvlengneerng Informatcs,

More information

ANSWERS. Problem 1. and the moment generating function (mgf) by. defined for any real t. Use this to show that E( U) var( U)

ANSWERS. Problem 1. and the moment generating function (mgf) by. defined for any real t. Use this to show that E( U) var( U) Econ 413 Exam 13 H ANSWERS Settet er nndelt 9 deloppgaver, A,B,C, som alle anbefales å telle lkt for å gøre det ltt lettere å stå. Svar er gtt . Unfortunately, there s a prntng error n the hnt of

More information

Parametric fractional imputation for missing data analysis. Jae Kwang Kim Survey Working Group Seminar March 29, 2010

Parametric fractional imputation for missing data analysis. Jae Kwang Kim Survey Working Group Seminar March 29, 2010 Parametrc fractonal mputaton for mssng data analyss Jae Kwang Km Survey Workng Group Semnar March 29, 2010 1 Outlne Introducton Proposed method Fractonal mputaton Approxmaton Varance estmaton Multple mputaton

More information

14 Lagrange Multipliers

14 Lagrange Multipliers Lagrange Multplers 14 Lagrange Multplers The Method of Lagrange Multplers s a powerful technque for constraned optmzaton. Whle t has applcatons far beyond machne learnng t was orgnally developed to solve

More information

On an Extension of Stochastic Approximation EM Algorithm for Incomplete Data Problems. Vahid Tadayon 1

On an Extension of Stochastic Approximation EM Algorithm for Incomplete Data Problems. Vahid Tadayon 1 On an Extenson of Stochastc Approxmaton EM Algorthm for Incomplete Data Problems Vahd Tadayon Abstract: The Stochastc Approxmaton EM (SAEM algorthm, a varant stochastc approxmaton of EM, s a versatle tool

More information

Maximizing the number of nonnegative subsets

Maximizing the number of nonnegative subsets Maxmzng the number of nonnegatve subsets Noga Alon Hao Huang December 1, 213 Abstract Gven a set of n real numbers, f the sum of elements of every subset of sze larger than k s negatve, what s the maxmum

More information

Module 2. Random Processes. Version 2 ECE IIT, Kharagpur

Module 2. Random Processes. Version 2 ECE IIT, Kharagpur Module Random Processes Lesson 6 Functons of Random Varables After readng ths lesson, ou wll learn about cdf of functon of a random varable. Formula for determnng the pdf of a random varable. Let, X be

More information

Math 426: Probability MWF 1pm, Gasson 310 Homework 4 Selected Solutions

Math 426: Probability MWF 1pm, Gasson 310 Homework 4 Selected Solutions Exercses from Ross, 3, : Math 26: Probablty MWF pm, Gasson 30 Homework Selected Solutons 3, p. 05 Problems 76, 86 3, p. 06 Theoretcal exercses 3, 6, p. 63 Problems 5, 0, 20, p. 69 Theoretcal exercses 2,

More information

Lecture 4. Instructor: Haipeng Luo

Lecture 4. Instructor: Haipeng Luo Lecture 4 Instructor: Hapeng Luo In the followng lectures, we focus on the expert problem and study more adaptve algorthms. Although Hedge s proven to be worst-case optmal, one may wonder how well t would

More information

Retrieval Models: Language models

Retrieval Models: Language models CS-590I Informaton Retreval Retreval Models: Language models Luo S Department of Computer Scence Purdue Unversty Introducton to language model Ungram language model Document language model estmaton Maxmum

More information

On some variants of Jensen s inequality

On some variants of Jensen s inequality On some varants of Jensen s nequalty S S DRAGOMIR School of Communcatons & Informatcs, Vctora Unversty, Vc 800, Australa EMMA HUNT Department of Mathematcs, Unversty of Adelade, SA 5005, Adelade, Australa

More information

Lecture Space-Bounded Derandomization

Lecture Space-Bounded Derandomization Notes on Complexty Theory Last updated: October, 2008 Jonathan Katz Lecture Space-Bounded Derandomzaton 1 Space-Bounded Derandomzaton We now dscuss derandomzaton of space-bounded algorthms. Here non-trval

More information

The internal structure of natural numbers and one method for the definition of large prime numbers

The internal structure of natural numbers and one method for the definition of large prime numbers The nternal structure of natural numbers and one method for the defnton of large prme numbers Emmanul Manousos APM Insttute for the Advancement of Physcs and Mathematcs 3 Poulou str. 53 Athens Greece Abstract

More information

Economics 101. Lecture 4 - Equilibrium and Efficiency

Economics 101. Lecture 4 - Equilibrium and Efficiency Economcs 0 Lecture 4 - Equlbrum and Effcency Intro As dscussed n the prevous lecture, we wll now move from an envronment where we looed at consumers mang decsons n solaton to analyzng economes full of

More information