LoProp: local property calculations with quantum chemical methods

Size: px
Start display at page:

Download "LoProp: local property calculations with quantum chemical methods"

Transcription

1 LoProp: local property calculations with quantum chemical methods Laura Gagliardi Dipartimento di Chimica Fisica F. Accascina Università degli Studi di Palermo Italy Gunnar Karlström, Jesper Krogh, and Roland Lindh Deptartment of Theoretical Chemistry University of Lund Sweden 1

2 Outline Background Method Results 2

3 Premises and Motivations A quantum chemical calculation gives an energy and a wave function: transform this information into a form that allows for comparison between different systems. Small systems: enough to calculate molecular properties like the dipole or quadrupole moment. Response properties characterized with a polarizability or hyperpolarizability. Large systems: a partitioning of the molecular charge distribution or the response property into local contributions is needed. 3

4 From Quantum Chemistry to Molecular Simulations Empirical potentials are used in most of existing molecular simulation packages. The accuracy is good for simulations on systems similar to those for which the potential parameters were fitted. Semiempirical potentials: the electrostatics from the molecular wf and the dispersion and repulsion parameters from empirical parameters. Quantum chemical methods can be used to calculate the intermolecular forces for the entire system at each step of the simulation. 4

5 The NEMO potential E = E el.stat. + E ind. + E disp. + E exc.rep. E el.stat. from a multi-center multipole expansion of the density of each monomer. E ind. by computing distributed polarizabilities in each molecule. E disp. from the interaction between the distributed polarizabilities (London force). E exc.rep. proportional to the square of the overlap; exponentially decaying function of the atom-atom distance. Fit the parameters of E exc.rep. to quantum chemical energies minus E el.stat., E ind. and E disp.. 5

6 Localization schemes Should converge with basis set saturation. Should be computational simple. Should give physically meaningful and transferable local properties. Should exactly represent molecular properties. Should allow comparision. Available methods: Mulliken, NAO, ESP, AIM, GAPT. 6

7 The new method LoProp Meets all 5 requirements Only constraint: the ground state valence orbitals of the atoms in the studied system are well described with the used basis set. The only parameter which effects the LoProp scheme is the classification of the basis functions into occupied and virtual. 7

8 Localization scheme T1 Gram-Schmidt orthonormalization of the atomic basis. T2 One Löwdin orthonormalization in the occupied and one in the virtual subspace. T3 Gram-Schmidt orthonormalization to project the occupied out of the virtual subspace. T4 Löwdin orthonormalization in the virtual subspace. Total transformation matrix T = T1 T2 T3 T4 8

9 9

10 Localized Properties < O >= T r(do) = µν D µν < µ O ν > (1) becomes < O >= T r(t 1 DT)(T 1 OT) (2) transform the integrals and 1-electron density matrix to the new basis and restrict the trace to the subspace of functions of a single center or the combination of two centers. 10

11 Localized Polarizabilities The localized polarizability is computed from the change of the localized dipole moments and the fluctuating charges due to the applied electric field. α (ij) κλ = µ(ij) κ (F + δ λ ) µ (ij) κ (F δ λ ) 2δ λ + ( Q(ij) (F + δ λ ) Q (ij) (F δ λ ))(R (i) R (j) ) κ 2δ λ 11

12 To proceed in our analysis and partition of the molecular polarizability we define Q (ij) s as the charge transfer from center j to center i as induced by the change of the electric field (note the permutational symmetry: Q (ij) = Q (ji) ). The charge transfer from center j to i as a function of the change of the applied electric field is not uniquely defined. The sum of the Q (ij) s for a fixed i gives q (ii) (F) = j i Q (ij) (F) where q (i) (F) = q (i) (F) q (i) (0) 12

13 A reasonable requirement is that the Q (ij) s are designed to be as small as possible and that the charge transfer is short range. For this purpose we construct the Lagrangian L = ij ( Q (ij) ) 2 f(r ij ) + i λ i ( j i Q (ij) q (ii) ) where the r ij, being the distance between center i and j, and f(r ij ) being a penalty function which will give the desired localized charge transfer. 13

14 In our investigations we have worked with two penalty functions, where n is an integer, and f(r ij ) = r n ij (3) f(r ij ) = Exp(α(r ij /(r BS i + r BS j )) 2 ) (4) where α is a constant and r BS is the Bragg-Slater radius of the respective atoms. 14

15 The Lagrangian leads to the equation system Aλ = q where the matrix elements of A are computed as A ij = 1 2f(r ij ) + C and A ii = j i 1 2f(r ij ) + C C is an arbitrary constant which is added to shift the eigen vector corresponding to i q(i) = 0. The equation system is now trivially solved by computing the inverse of the A matrix and the 15

16 Q (ij) are computed as Q (ij) = λ i λ j 2f(r ij ) 16

17 Water: Oxygen total charge LoProp 631g LoProp cc-pvnz LoProp ANO Mulliken 631g Mulliken cc-pvnz Mulliken ANO NBO 631g NBO cc-pvnz B1 B2 B3 B4 17

18 Formaldehyde: SCF Dipole Moment (a.u.) Table 1: ANOS=3s2p1d on C, O and 2s1p on H; ANOL=4s3p2d1f on C, O and 3s2p1d on H ANOS ANOL µ x µ y µ z µ x µ y µ z H ± ± C O HH HC ± ± HO ± ± CO SCF Total CASSCF Total CASPT2 Total Experiment: µ=

19 Formaldehyde: Polarizability (a.u.) Table 2: ANOS:=3s2p1d on C, O and 2s1p on H α xx α yy α zz α xy α yz α zx H ± C O HH HC ± HO ± CO Total SCF Total CASSCF Total CASPT ᾱ: Exper. 16.5; CASPT2 ANOS 14.41; ANOL

20 Eclipsed and Staggered Ethane Eclip. Stag. Eclip. Stag. Exp. Basis set ANO-small ANO-large q C q H µ C µ C1 C µ H µ C1 H ᾱ C ᾱ C1 C ᾱ H ᾱ C1 H ᾱ

21 Propane versus Butane Prop. But. Prop. But. µ C µ C1 C µ H µ C1 H µ H µ C1 H ᾱ C ᾱ C1 C ᾱ H ᾱ C1 H ᾱ H ᾱ C1 H ᾱ ᾱ exp

22 Benzene vs. Naphtalene 22

23 23

24 (% A 7 B> 1 24 %

25 <! > 1 = 25

26 A 7B>1 < 26 8

27 - A 7 B>1 27

28 LoProp In Summary Easy implementation and not CPU intensive. Correct basis set convergence, transferable properties. Useful to generate force fields for molecular simulations. 28

Electric properties of molecules

Electric properties of molecules Electric properties of molecules For a molecule in a uniform electric fielde the Hamiltonian has the form: Ĥ(E) = Ĥ + E ˆµ x where we assume that the field is directed along the x axis and ˆµ x is the

More information

I. CSFs Are Used to Express the Full N-Electron Wavefunction

I. CSFs Are Used to Express the Full N-Electron Wavefunction Chapter 11 One Must be Able to Evaluate the Matrix Elements Among Properly Symmetry Adapted N- Electron Configuration Functions for Any Operator, the Electronic Hamiltonian in Particular. The Slater-Condon

More information

CE 530 Molecular Simulation

CE 530 Molecular Simulation 1 CE 530 Molecular Simulation Lecture 14 Molecular Models David A. Kofke Department of Chemical Engineering SUNY Buffalo kofke@eng.buffalo.edu 2 Review Monte Carlo ensemble averaging, no dynamics easy

More information

The Local Properties of the Electronic Structure

The Local Properties of the Electronic Structure The Local Properties of the Electronic Structure A Bridge between Theory and Experiment Valera Veryazov Valera.Veryazov@teokem.lu.se Department of Theoretical Chemistry Lund University Local properties

More information

Semi-Empirical MO Methods

Semi-Empirical MO Methods Semi-Empirical MO Methods the high cost of ab initio MO calculations is largely due to the many integrals that need to be calculated (esp. two electron integrals) semi-empirical MO methods start with the

More information

Polarizable force fields for flexible molecules

Polarizable force fields for flexible molecules HOVEDOPPGAVE 2004 Polarizable force fields for flexible molecules Kandidatens navn Asbjørn Holt Faglærer: Professor Per-Olof Åstrand, NTNU Professor Gunnar Karlström, Lunds Universitet Erklæring/Declaration

More information

CHAPTER 2. Atomic Structure And Bonding 2-1

CHAPTER 2. Atomic Structure And Bonding 2-1 CHAPTER 2 Atomic Structure And Bonding 2-1 Structure of Atoms ATOM Basic Unit of an Element Diameter : 10 10 m. Neutrally Charged Nucleus Diameter : 10 14 m Accounts for almost all mass Positive Charge

More information

Molecular Simulation I

Molecular Simulation I Molecular Simulation I Quantum Chemistry Classical Mechanics E = Ψ H Ψ ΨΨ U = E bond +E angle +E torsion +E non-bond Jeffry D. Madura Department of Chemistry & Biochemistry Center for Computational Sciences

More information

Supporting Information. Local decomposition of imaginary polarizabilities. and dispersion coefficients

Supporting Information. Local decomposition of imaginary polarizabilities. and dispersion coefficients Electronic Supplementary Material (ESI) for Physical hemistry hemical Physics. This journal is the Owner Societies 27 Supporting Information Local decomposition of imaginary polarizabilities and dispersion

More information

Bonding and IMF practice test MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.

Bonding and IMF practice test MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. Exam Name Bonding and IMF practice test MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question. 1) There are paired and unpaired electrons in the Lewis symbol

More information

Introduction to DFTB. Marcus Elstner. July 28, 2006

Introduction to DFTB. Marcus Elstner. July 28, 2006 Introduction to DFTB Marcus Elstner July 28, 2006 I. Non-selfconsistent solution of the KS equations DFT can treat up to 100 atoms in routine applications, sometimes even more and about several ps in MD

More information

Advanced Spectroscopy. Dr. P. Hunt Rm 167 (Chemistry) web-site:

Advanced Spectroscopy. Dr. P. Hunt Rm 167 (Chemistry) web-site: Advanced Spectroscopy Dr. P. Hunt p.hunt@imperial.ac.uk Rm 167 (Chemistry) web-site: http://www.ch.ic.ac.uk/hunt Maths! Coordinate transformations rotations! example 18.1 p501 whole chapter on Matrices

More information

Practical Issues on the Use of the CASPT2/CASSCF Method in Modeling Photochemistry: the Selection and Protection of an Active Space

Practical Issues on the Use of the CASPT2/CASSCF Method in Modeling Photochemistry: the Selection and Protection of an Active Space Practical Issues on the Use of the CASPT2/CASSCF Method in Modeling Photochemistry: the Selection and Protection of an Active Space Roland Lindh Dept. of Chemistry Ångström The Theoretical Chemistry Programme

More information

Population Analysis. Mulliken Population Analysis APPENDIX S

Population Analysis. Mulliken Population Analysis APPENDIX S APPENDIX S Population Analysis On p. 665, electronic density ρ is defined. If the wave function is a Slater determinant p. 397) and assuming the double occupancy of orbitals ϕ i, we have see 11.7) ρ r

More information

SCF calculation on HeH +

SCF calculation on HeH + SCF calculation on HeH + Markus Meuwly Department of Chemistry, University of Basel, Basel, Switzerland Abstract This document describes the main steps involved in carrying out a SCF calculation on the

More information

Problem Set 2 Due Tuesday, September 27, ; p : 0. (b) Construct a representation using five d orbitals that sit on the origin as a basis: 1

Problem Set 2 Due Tuesday, September 27, ; p : 0. (b) Construct a representation using five d orbitals that sit on the origin as a basis: 1 Problem Set 2 Due Tuesday, September 27, 211 Problems from Carter: Chapter 2: 2a-d,g,h,j 2.6, 2.9; Chapter 3: 1a-d,f,g 3.3, 3.6, 3.7 Additional problems: (1) Consider the D 4 point group and use a coordinate

More information

Chem 4502 Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi. Lecture 28, December 08, 2014

Chem 4502 Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi. Lecture 28, December 08, 2014 Chem 4502 Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi Lecture 28, December 08, 2014 Solved Homework Water, H 2 O, involves 2 hydrogen atoms and an oxygen

More information

Problem Set 2 Due Thursday, October 1, & & & & # % (b) Construct a representation using five d orbitals that sit on the origin as a basis:

Problem Set 2 Due Thursday, October 1, & & & & # % (b) Construct a representation using five d orbitals that sit on the origin as a basis: Problem Set 2 Due Thursday, October 1, 29 Problems from Cotton: Chapter 4: 4.6, 4.7; Chapter 6: 6.2, 6.4, 6.5 Additional problems: (1) Consider the D 3h point group and use a coordinate system wherein

More information

Two Posts to Fill On School Board

Two Posts to Fill On School Board Y Y 9 86 4 4 qz 86 x : ( ) z 7 854 Y x 4 z z x x 4 87 88 Y 5 x q x 8 Y 8 x x : 6 ; : 5 x ; 4 ( z ; ( ) ) x ; z 94 ; x 3 3 3 5 94 ; ; ; ; 3 x : 5 89 q ; ; x ; x ; ; x : ; ; ; ; ; ; 87 47% : () : / : 83

More information

The heart of group theory

The heart of group theory The heart of group theory. We can represent a molecule in a mathematical way e.g. with the coordinates of its atoms. This mathematical description of the molecule forms a basis for symmetry operation.

More information

Chapter 9 Molecular Geometry and Bonding Theories

Chapter 9 Molecular Geometry and Bonding Theories Chapter 9 Molecular Geometry and Bonding Theories molecular shapes the VSEPR model molecular shape and molecular polarity covalent bonding and orbital overlap hybrid orbitals multiple bonds 9.1 Molecular

More information

Basis Set for Molecular Orbital Theory

Basis Set for Molecular Orbital Theory Basis Set for Molecular Orbital Theory! Different Types of Basis Functions! Different Types of Atom Center Basis Functions! Classifications of Gaussian Basis Sets! Pseudopotentials! Molecular Properties

More information

General Physical Chemistry II

General Physical Chemistry II General Physical Chemistry II Lecture 13 Aleksey Kocherzhenko October 16, 2014" Last time " The Hückel method" Ø Used to study π systems of conjugated molecules" Ø π orbitals are treated separately from

More information

Hyperfine interactions Mössbauer, PAC and NMR Spectroscopy: Quadrupole splittings, Isomer shifts, Hyperfine fields (NMR shifts)

Hyperfine interactions Mössbauer, PAC and NMR Spectroscopy: Quadrupole splittings, Isomer shifts, Hyperfine fields (NMR shifts) Hyperfine interactions Mössbauer, PAC and NMR Spectroscopy: Quadrupole splittings, Isomer shifts, Hyperfine fields (NMR shifts) Peter Blaha Institute of Materials Chemistry TU Wien Definition of Hyperfine

More information

with the larger dimerization energy also exhibits the larger structural changes.

with the larger dimerization energy also exhibits the larger structural changes. A7. Looking at the image and table provided below, it is apparent that the monomer and dimer are structurally almost identical. Although angular and dihedral data were not included, these data are also

More information

Towards gas-phase accuracy for condensed phase problems

Towards gas-phase accuracy for condensed phase problems Towards gas-phase accuracy for condensed phase problems Fred Manby Centre for Computational Chemistry, School of Chemistry University of Bristol STC 2006: Quantum Chemistry Methods and Applications Erkner,

More information

Lecture 2: Atom and Bonding Semester /2013

Lecture 2: Atom and Bonding Semester /2013 EMT 110 Engineering Materials Lecture 2: Atom and Bonding Semester 1 2012/2013 Atomic Structure Fundamental Concept Atoms are the structural unit of all engineering materials! Each atoms consist of nucleus

More information

Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi. Lecture 27, December 5, 2014

Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi. Lecture 27, December 5, 2014 Chem 4502 Introduction to Quantum Mechanics and Spectroscopy 3 Credits Fall Semester 2014 Laura Gagliardi Lecture 27, December 5, 2014 (Some material in this lecture has been adapted from Cramer, C. J.

More information

Spin Interactions. Giuseppe Pileio 24/10/2006

Spin Interactions. Giuseppe Pileio 24/10/2006 Spin Interactions Giuseppe Pileio 24/10/2006 Magnetic moment µ = " I ˆ µ = " h I(I +1) " = g# h Spin interactions overview Zeeman Interaction Zeeman interaction Interaction with the static magnetic field

More information

Charge Analysis: Atoms in Molecules

Charge Analysis: Atoms in Molecules Daubechies Wavelets in Electronic Structure Calculation: BigDFT Code Tutorial CECAM - GRENOBLE : Atoms in Molecules Ali Sadeghi Basel University 21 November 2011 An output of electronic structure calculations

More information

' Liberty and Umou Ono and Inseparablo "

' Liberty and Umou Ono and Inseparablo 3 5? #< q 8 2 / / ) 9 ) 2 ) > < _ / ] > ) 2 ) ) 5 > x > [ < > < ) > _ ] ]? <

More information

Chem 442 Review for Exam 2. Exact separation of the Hamiltonian of a hydrogenic atom into center-of-mass (3D) and relative (3D) components.

Chem 442 Review for Exam 2. Exact separation of the Hamiltonian of a hydrogenic atom into center-of-mass (3D) and relative (3D) components. Chem 44 Review for Exam Hydrogenic atoms: The Coulomb energy between two point charges Ze and e: V r Ze r Exact separation of the Hamiltonian of a hydrogenic atom into center-of-mass (3D) and relative

More information

Atomic Structure and Bonding. Chapter 1 Organic Chemistry, 8 th Edition John McMurry

Atomic Structure and Bonding. Chapter 1 Organic Chemistry, 8 th Edition John McMurry Atomic Structure and Bonding Chapter 1 Organic Chemistry, 8 th Edition John McMurry 1 Common Elements Groups First row Second row In most organic molecules carbon is combined with relatively few elements

More information

CHAPTER 3 POTENTIALS 10/13/2016. Outlines. 1. Laplace s equation. 2. The Method of Images. 3. Separation of Variables. 4. Multipole Expansion

CHAPTER 3 POTENTIALS 10/13/2016. Outlines. 1. Laplace s equation. 2. The Method of Images. 3. Separation of Variables. 4. Multipole Expansion CHAPTER 3 POTENTIALS Lee Chow Department of Physics University of Central Florida Orlando, FL 32816 Outlines 1. Laplace s equation 2. The Method of Images 3. Separation of Variables 4. Multipole Expansion

More information

Electron Correlation Methods

Electron Correlation Methods Electron Correlation Methods HF method: electron-electron interaction is replaced by an average interaction E HF c = E 0 E HF E 0 exact ground state energy E HF HF energy for a given basis set HF E c

More information

Multipole moments. Dipole moment. The second moment µ is more commonly called the dipole moment, of the charge. distribution and is a vector

Multipole moments. Dipole moment. The second moment µ is more commonly called the dipole moment, of the charge. distribution and is a vector Dipole moment Multipole moments The second moment µ is more commonly called the dipole moment, of the charge distribution and is a vector µ = µ x ˆx + µ y ŷ + µ z ẑ where the α component is given by µ

More information

Introduction to Computational Chemistry for Experimental Chemists... (Part 2/2)

Introduction to Computational Chemistry for Experimental Chemists... (Part 2/2) 12 th PhD seminar, Garching, October 31 st 2008 Introduction to Computational Chemistry for Experimental Chemists... (Part 2/2) Dr. Markus Drees, TU München Universität Regensburg Universität Augsburg

More information

Section 3 Electronic Configurations, Term Symbols, and States

Section 3 Electronic Configurations, Term Symbols, and States Section 3 Electronic Configurations, Term Symbols, and States Introductory Remarks- The Orbital, Configuration, and State Pictures of Electronic Structure One of the goals of quantum chemistry is to allow

More information

Chapter 3. Orbitals and Bonding

Chapter 3. Orbitals and Bonding Chapter 3. Orbitals and Bonding What to master Assigning Electrons to Atomic Orbitals Constructing Bonding and Antibonding Molecular Orbitals with Simple MO Theory Understanding Sigma and Pi Bonds Identifying

More information

Chapter 9 Long range perturbation theory

Chapter 9 Long range perturbation theory Chapter 9 Long range perturbation theory 9.1 Induction energy Substitution of the expanded interaction operator leads at the first order to the multipole expression of the electrostatic interaction energy.

More information

Subject of the Lecture:

Subject of the Lecture: Subject of the Lecture: Conceptual basis for the development of force fields. Implementation/validation Water - a worked example Extensions - combining molecular mechanics and quantum mechanics (QM/MM)

More information

Colloid Chemistry. La chimica moderna e la sua comunicazione Silvia Gross.

Colloid Chemistry. La chimica moderna e la sua comunicazione Silvia Gross. Colloid Chemistry La chimica moderna e la sua comunicazione Silvia Gross Istituto Dipartimento di Scienze di e Scienze Tecnologie Chimiche Molecolari ISTM-CNR, Università Università degli Studi degli Studi

More information

Gaussian Multipole Model (GMM)

Gaussian Multipole Model (GMM) 190 J. Chem. Theory Comput. 2010, 6, 190 202 Gaussian Multipole Model (GMM) Dennis M. Elking, G. Andrés Cisneros, Jean-Philip Piquemal, Thomas A. Darden, and Lee G. Pedersen*,, Laboratory of Structural

More information

K + 09/04/2018. Structure of Organic Molecules. Ionic bond. The compound potassium fluoride consists of potassium (K+) ions and fluoride (F-) ions

K + 09/04/2018. Structure of Organic Molecules. Ionic bond. The compound potassium fluoride consists of potassium (K+) ions and fluoride (F-) ions Structure of rganic Molecules Ref. books: 1. A text book of rganic Chemistry - B.S. Bahl and Arun Bahl 2. rganic Chemistry - R.T. Morrison and R. N. Boyd Atom: The smallest part of an element that can

More information

( R)Ψ el ( r;r) = E el ( R)Ψ el ( r;r)

( R)Ψ el ( r;r) = E el ( R)Ψ el ( r;r) Born Oppenheimer Approximation: Ĥ el ( R)Ψ el ( r;r) = E el ( R)Ψ el ( r;r) For a molecule with N electrons and M nuclei: Ĥ el What is E el (R)? s* potential surface Reaction Barrier Unstable intermediate

More information

Multipole moments. November 9, 2015

Multipole moments. November 9, 2015 Multipole moments November 9, 5 The far field expansion Suppose we have a localized charge distribution, confined to a region near the origin with r < R. Then for values of r > R, the electric field must

More information

OWELL WEEKLY JOURNAL

OWELL WEEKLY JOURNAL Y \»< - } Y Y Y & #»»» q ] q»»»>) & - - - } ) x ( - { Y» & ( x - (» & )< - Y X - & Q Q» 3 - x Q Y 6 \Y > Y Y X 3 3-9 33 x - - / - -»- --

More information

Electronic structure calculations: fundamentals George C. Schatz Northwestern University

Electronic structure calculations: fundamentals George C. Schatz Northwestern University Electronic structure calculations: fundamentals George C. Schatz Northwestern University Electronic Structure (often called Quantum Chemistry) calculations use quantum mechanics to determine the wavefunctions

More information

Intermolecular Forces and Phase Equilibria

Intermolecular Forces and Phase Equilibria Intermolecular Forces and Phase Equilibria Chemistry 36 Spring 2002 Intermolecular Forces What happens to gas phase molecules when subjected to increased pressure? Volume occupied by gas decreases (IGL)

More information

Little Orthogonality Theorem (LOT)

Little Orthogonality Theorem (LOT) Little Orthogonality Theorem (LOT) Take diagonal elements of D matrices in RG * D R D R i j G ij mi N * D R D R N i j G G ij ij RG mi mi ( ) By definition, D j j j R TrD R ( R). Sum GOT over β: * * ( )

More information

Example questions for Molecular modelling (Level 4) Dr. Adrian Mulholland

Example questions for Molecular modelling (Level 4) Dr. Adrian Mulholland Example questions for Molecular modelling (Level 4) Dr. Adrian Mulholland 1) Question. Two methods which are widely used for the optimization of molecular geometies are the Steepest descents and Newton-Raphson

More information

Electronic structure of correlated electron systems. G.A.Sawatzky UBC Lecture

Electronic structure of correlated electron systems. G.A.Sawatzky UBC Lecture Electronic structure of correlated electron systems G.A.Sawatzky UBC Lecture 6 011 Influence of polarizability on the crystal structure Ionic compounds are often cubic to maximize the Madelung energy i.e.

More information

Answers Quantum Chemistry NWI-MOL406 G. C. Groenenboom and G. A. de Wijs, HG00.307, 8:30-11:30, 21 jan 2014

Answers Quantum Chemistry NWI-MOL406 G. C. Groenenboom and G. A. de Wijs, HG00.307, 8:30-11:30, 21 jan 2014 Answers Quantum Chemistry NWI-MOL406 G. C. Groenenboom and G. A. de Wijs, HG00.307, 8:30-11:30, 21 jan 2014 Question 1: Basis sets Consider the split valence SV3-21G one electron basis set for formaldehyde

More information

Feet on the potential energy surface, head in the π clouds

Feet on the potential energy surface, head in the π clouds Graduate Theses and Dissertations Iowa State University Capstones, Theses and Dissertations 2011 Feet on the potential energy surface, head in the π clouds Quentin Anthony Smith Iowa State University Follow

More information

Vibrational states of molecules. Diatomic molecules Polyatomic molecules

Vibrational states of molecules. Diatomic molecules Polyatomic molecules Vibrational states of molecules Diatomic molecules Polyatomic molecules Diatomic molecules V v 1 v 0 Re Q Birge-Sponer plot The solution of the Schrödinger equation can be solved analytically for the

More information

Molecular Geometries. Molecular Geometries. Remember that covalent bonds are formed when electrons in atomic orbitals are shared between two nuclei.

Molecular Geometries. Molecular Geometries. Remember that covalent bonds are formed when electrons in atomic orbitals are shared between two nuclei. Molecular Geometries Lewis dot structures are very useful in determining the types of bonds in a molecule, but they may not provide the best insight into the spatial geometry of a molecule, i.e., how the

More information

Molecular Symmetry 10/25/2018

Molecular Symmetry 10/25/2018 Symmetry helps us understand molecular structure, some chemical properties, and characteristics of physical properties (spectroscopy). Predict IR spectra or Interpret UV-Vis spectra Predict optical activity

More information

Molecular body vs. molecular skeleton Ideal surface 1, 29

Molecular body vs. molecular skeleton Ideal surface 1, 29 Subject Index Acid catalysis 244, 245, 247, 249, 252 Bonds-pairs 177, 178, 184, 185, 190, 191, Activation 207, 208 202-204 Activation barrier 160, 233, 242, 249 Bottleneck 291, 299, 307, 323-325, 336,

More information

JONATHAN E THIRMAN. Doctor of Philosophy. Chemistry. in the. Graduate Division. of the. University of California, Berkeley. Committee in charge:

JONATHAN E THIRMAN. Doctor of Philosophy. Chemistry. in the. Graduate Division. of the. University of California, Berkeley. Committee in charge: A Second-Order MøllerPlesset Perturbation Theory Energy Decomposition Analysis for Intermolecular Interactions: Design, Implementation, and Application by JONATHAN E THIRMAN A dissertation submitted in

More information

Quantum Chemical Simulations and Descriptors. Dr. Antonio Chana, Dr. Mosè Casalegno

Quantum Chemical Simulations and Descriptors. Dr. Antonio Chana, Dr. Mosè Casalegno Quantum Chemical Simulations and Descriptors Dr. Antonio Chana, Dr. Mosè Casalegno Classical Mechanics: basics It models real-world objects as point particles, objects with negligible size. The motion

More information

Lecture 1. Conformational Analysis in Acyclic Systems

Lecture 1. Conformational Analysis in Acyclic Systems Lecture 1 Conformational Analysis in Acyclic Systems Learning Outcomes: by the end of this lecture and after answering the associated problems, you will be able to: 1. use Newman and saw-horse projections

More information

Role of the Molecular Environment in Flavoprotein Color and Redox Tuning: QM Cluster versus QM/MM Modeling

Role of the Molecular Environment in Flavoprotein Color and Redox Tuning: QM Cluster versus QM/MM Modeling S1 Supporting Information for Role of the Molecular Environment in Flavoprotein Color and Redox Tuning: QM Cluster versus QM/MM Modeling Anikó Udvarhelyi 1, Massimo Olivucci 2,3,4 and Tatiana Domratcheva

More information

B7 Symmetry : Questions

B7 Symmetry : Questions B7 Symmetry 009-10: Questions 1. Using the definition of a group, prove the Rearrangement Theorem, that the set of h products RS obtained for a fixed element S, when R ranges over the h elements of the

More information

Dalton Quantum Chemistry Program

Dalton Quantum Chemistry Program 1 Quotation from home page: Dalton Quantum Chemistry Program Dalton QCP represents a powerful quantum chemistry program for the calculation of molecular properties with SCF, MP2, MCSCF or CC wave functions.

More information

5 Irreducible representations

5 Irreducible representations Physics 129b Lecture 8 Caltech, 01/1/19 5 Irreducible representations 5.5 Regular representation and its decomposition into irreps To see that the inequality is saturated, we need to consider the so-called

More information

Chapter 2 Structure and Properties of Organic Molecules. Advanced Bonding: Review

Chapter 2 Structure and Properties of Organic Molecules. Advanced Bonding: Review hapter 2 Structure and Properties of Organic Molecules hemistry 231 Organic hemistry I Fall 2007 Advanced Bonding: Review Atomic Quantum Mechanics cannot explain how molecules like 4 form: Valence Bond

More information

Equations of State. Equations of State (EoS)

Equations of State. Equations of State (EoS) Equations of State (EoS) Equations of State From molecular considerations, identify which intermolecular interactions are significant (including estimating relative strengths of dipole moments, polarizability,

More information

Handbook of Computational Quantum Chemistry. DAVID B. COOK The Department of Chemistry, University of Sheffield

Handbook of Computational Quantum Chemistry. DAVID B. COOK The Department of Chemistry, University of Sheffield Handbook of Computational Quantum Chemistry DAVID B. COOK The Department of Chemistry, University of Sheffield Oxford New York Tokyo OXFORD UNIVERSITY PRESS 1998 CONTENTS 1 Mechanics and molecules 1 1.1

More information

Bent linear trigonal planar trigonal pyramidal Polar nonpolar nonpolar polar Sp 3 sp sp 2 sp 3

Bent linear trigonal planar trigonal pyramidal Polar nonpolar nonpolar polar Sp 3 sp sp 2 sp 3 Name period ap chemistry unit 3 worksheet 1. What are structural isomers? Draw two isomers of pentane. Compounds with the same formula but different structures. See in class 2. give the formula for each

More information

REFLECTIONS IN A EUCLIDEAN SPACE

REFLECTIONS IN A EUCLIDEAN SPACE REFLECTIONS IN A EUCLIDEAN SPACE PHILIP BROCOUM Let V be a finite dimensional real linear space. Definition 1. A function, : V V R is a bilinear form in V if for all x 1, x, x, y 1, y, y V and all k R,

More information

Organic Chemistry. Review Information for Unit 1. VSEPR Hybrid Orbitals Polar Molecules

Organic Chemistry. Review Information for Unit 1. VSEPR Hybrid Orbitals Polar Molecules rganic hemistry Review Information for Unit 1 VSEPR ybrid rbitals Polar Molecules VSEPR The valence shell electron pair repulsion model (VSEPR) can be used to predict the geometry around a particular atom

More information

CHEMISTRY 4021/8021 MIDTERM EXAM 1 SPRING 2014

CHEMISTRY 4021/8021 MIDTERM EXAM 1 SPRING 2014 CHEMISTRY 4021/8021 Q1) Propose a simple, united-atom molecular mechanics force-field needed to generate a potential energy surface for an isolated molecule of acetone (Me 2 CO). I.e., provide an energy

More information

MODELING MATTER AT NANOSCALES

MODELING MATTER AT NANOSCALES MODELING MATTER AT NANOSCALES 6. The theory of molecular orbitals for the description of nanosystems (part II) 6.0. Ab initio methods. Basis functions. Luis A. Monte ro Firmado digitalmente por Luis A.

More information

Shapes of Molecules VSEPR

Shapes of Molecules VSEPR Shapes of Molecules In this section we will use Lewis structures as an introduction to the shapes of molecules. The key concepts are: Electron pairs repel each other. Electron pairs assume orientations

More information

26 Group Theory Basics

26 Group Theory Basics 26 Group Theory Basics 1. Reference: Group Theory and Quantum Mechanics by Michael Tinkham. 2. We said earlier that we will go looking for the set of operators that commute with the molecular Hamiltonian.

More information

Similarity Transforms, Classes Classes, cont.

Similarity Transforms, Classes Classes, cont. Multiplication Tables, Rearrangement Theorem Each row and each column in the group multiplication table lists each of the group elements once and only once. (Why must this be true?) From this, it follows

More information

Chapter 9. Molecular Geometries and Bonding Theories. Lecture Presentation. John D. Bookstaver St. Charles Community College Cottleville, MO

Chapter 9. Molecular Geometries and Bonding Theories. Lecture Presentation. John D. Bookstaver St. Charles Community College Cottleville, MO Lecture Presentation Chapter 9 Theories John D. Bookstaver St. Charles Community College Cottleville, MO Shapes The shape of a molecule plays an important role in its reactivity. By noting the number of

More information

Chapter 2 Alkanes and Cycloalkanes: Introduction to Hydrocarbons

Chapter 2 Alkanes and Cycloalkanes: Introduction to Hydrocarbons Chapter 2 Alkanes and Cycloalkanes: Introduction to Hydrocarbons 2.1 Classes of Hydrocarbons Classes of Hydrocarbons Hydrocarbons only contain carbon and hydrogen atoms. Hydrocarbons are either classed

More information

LOWELL WEEKLY JOURNAL

LOWELL WEEKLY JOURNAL Y -» $ 5 Y 7 Y Y -Y- Q x Q» 75»»/ q } # ]»\ - - $ { Q» / X x»»- 3 q $ 9 ) Y q - 5 5 3 3 3 7 Q q - - Q _»»/Q Y - 9 - - - )- [ X 7» -» - )»? / /? Q Y»» # X Q» - -?» Q ) Q \ Q - - - 3? 7» -? #»»» 7 - / Q

More information

( ) R kj. = y k y j. y A ( ) z A. y a. z a. Derivatives of the second order electrostatic tensor with respect to the translation of ( ) δ yβ.

( ) R kj. = y k y j. y A ( ) z A. y a. z a. Derivatives of the second order electrostatic tensor with respect to the translation of ( ) δ yβ. Supporting information Derivatives of R with respect to the translation of fragment along the y and z axis: y = y k y j (S1) z ( = z z k j) (S2) Derivatives of S with respect to the translation of fragment

More information

Physical States of Matter

Physical States of Matter Intermolecular forces Chapter 5 Physical States of Matter Section 12.3 Physical States of Matter Three phases of matter solid Definite shape and volume solid liquid liquid Definite volume, shape of container

More information

LECTURE 3 DIRECT PRODUCTS AND SPECTROSCOPIC SELECTION RULES

LECTURE 3 DIRECT PRODUCTS AND SPECTROSCOPIC SELECTION RULES SYMMETRY II. J. M. GOICOECHEA. LECTURE 3 1 LECTURE 3 DIRECT PRODUCTS AND SPECTROSCOPIC SELECTION RULES 3.1 Direct products and many electron states Consider the problem of deciding upon the symmetry of

More information

The liquid-vapour interface of QDO water. Flaviu Cipcigan Andrew Jones Jason Crain Vlad Sokhan Glenn Martyna

The liquid-vapour interface of QDO water. Flaviu Cipcigan Andrew Jones Jason Crain Vlad Sokhan Glenn Martyna The liquid-vapour interface of QDO water Flaviu Cipcigan Andrew Jones Jason Crain Vlad Sokhan Glenn Martyna The liquid-vapour interface of QDO water 1. Molecular models 2. The Quantum Drude Oscillator

More information

Valence Bond Theory - Description

Valence Bond Theory - Description Bonding and Molecular Structure - PART 2 - Valence Bond Theory and Hybridization 1. Understand and be able to describe the Valence Bond Theory description of covalent bond formation. 2. Understand and

More information

Unit 6: Molecular Geometry

Unit 6: Molecular Geometry Unit 6: Molecular Geometry Molecular Geometry [6-5] the polarity of each bond, along with the geometry of the molecule determines Molecular Polarity. To predict the geometries of more complicated molecules,

More information

Lecture 33: Intermolecular Interactions

Lecture 33: Intermolecular Interactions MASSACHUSETTS INSTITUTE OF TECHNOLOGY 5.61 Physical Chemistry I Fall, 2017 Professors Robert W. Field Lecture 33: Intermolecular Interactions Recent Lectures Non-degenerate Perturbation Theory vs. Variational

More information

Review Outline Chemistry 1B, Fall 2012

Review Outline Chemistry 1B, Fall 2012 Review Outline Chemistry 1B, Fall 2012 -------------------------------------- Chapter 12 -------------------------------------- I. Experiments and findings related to origin of quantum mechanics A. Planck:

More information

Lecture 9: Molecular integral. Integrals of the Hamiltonian matrix over Gaussian-type orbitals

Lecture 9: Molecular integral. Integrals of the Hamiltonian matrix over Gaussian-type orbitals Lecture 9: Molecular integral evaluation Integrals of the Hamiltonian matrix over Gaussian-type orbitals Gaussian-type orbitals The de-facto standard for electronic-structure calculations is to use Gaussian-type

More information

use the backs of pages as needed

use the backs of pages as needed CHEMISTRY 4021/8021 Q1) Propose a simple, united-atom molecular mechanics force-field needed to generate a potential energy surface for an isolated molecule of acetone (Me 2 CO). I.e., provide an energy

More information

Programming Project 2: Harmonic Vibrational Frequencies

Programming Project 2: Harmonic Vibrational Frequencies Programming Project 2: Harmonic Vibrational Frequencies Center for Computational Chemistry University of Georgia Athens, Georgia 30602 Summer 2012 1 Introduction This is the second programming project

More information

5. Atoms and the periodic table of chemical elements. Definition of the geometrical structure of a molecule

5. Atoms and the periodic table of chemical elements. Definition of the geometrical structure of a molecule Historical introduction The Schrödinger equation for one-particle problems Mathematical tools for quantum chemistry 4 The postulates of quantum mechanics 5 Atoms and the periodic table of chemical elements

More information

Theoretical Concepts of Spin-Orbit Splitting

Theoretical Concepts of Spin-Orbit Splitting Chapter 9 Theoretical Concepts of Spin-Orbit Splitting 9.1 Free-electron model In order to understand the basic origin of spin-orbit coupling at the surface of a crystal, it is a natural starting point

More information

A very brief history of the study of light

A very brief history of the study of light 1. Sir Isaac Newton 1672: A very brief history of the study of light Showed that the component colors of the visible portion of white light can be separated through a prism, which acts to bend the light

More information

GWL tutorial. Paolo Umari, Università degli Studi di Padova, Italy Democritos, Trieste

GWL tutorial. Paolo Umari, Università degli Studi di Padova, Italy Democritos, Trieste GWL tutorial Paolo Umari, Università degli Studi di Padova, Italy Democritos, Trieste GW calculation with QE and GWL Benfits: Optimal basis (reduced) for representing polarizabilty operators Full convergence

More information

Semi-Empirical Methods CHEM 430

Semi-Empirical Methods CHEM 430 Semi-Empirical Methods CHEM 430 Cost, Hartree%Fock, scales,as,n 4,(N=#, basis,funcfons), Due,to,two% electron, integrals, within,fock, matrix, Semi%empirical,cut, cost,by,reducing, number,of, integrals,

More information

Practical Advice for Quantum Chemistry Computations. C. David Sherrill School of Chemistry and Biochemistry Georgia Institute of Technology

Practical Advice for Quantum Chemistry Computations. C. David Sherrill School of Chemistry and Biochemistry Georgia Institute of Technology Practical Advice for Quantum Chemistry Computations C. David Sherrill School of Chemistry and Biochemistry Georgia Institute of Technology Choice of Basis Set STO-3G is too small 6-31G* or 6-31G** 6 probably

More information

Lecture B8 Molecular Orbital Theory, Part 3. Moving to the Suburbs

Lecture B8 Molecular Orbital Theory, Part 3. Moving to the Suburbs Lecture B8 Molecular Orbital Theory, Part 3 Moving to the Suburbs Molecular Orbital Theory - LCAO-MO Robert S. Mulliken realized that a Linear Combination of Atomic Orbitals (LCAO) could be used to make

More information

Inorg. Chem. 2005, 44, Francesco Ferrante, Laura Gagliardi, Bruce E. Bursten,, and Alfred P. Sattelberger

Inorg. Chem. 2005, 44, Francesco Ferrante, Laura Gagliardi, Bruce E. Bursten,, and Alfred P. Sattelberger Inorg. Chem. 2005, 44, 8476 8480 Multiconfigurational Theoretical Study of the Octamethyldimetalates of Cr(II), Mo(II), W(II), and Re(III): Revisiting the Correlation between the M M Bond Length and the

More information

Chemistry 12 Name Exam II Form A Section

Chemistry 12 Name Exam II Form A Section hemistry 12 Name Exam II Form A Section July 21, 2005 Student No. IMPORTANT: On the scantron (answer sheet), you MUST clearly fill your name, your student number, section number, and test form (white cover

More information

Exchange Mechanisms. Erik Koch Institute for Advanced Simulation, Forschungszentrum Jülich. lecture notes:

Exchange Mechanisms. Erik Koch Institute for Advanced Simulation, Forschungszentrum Jülich. lecture notes: Exchange Mechanisms Erik Koch Institute for Advanced Simulation, Forschungszentrum Jülich lecture notes: www.cond-mat.de/events/correl Magnetism is Quantum Mechanical QUANTUM MECHANICS THE KEY TO UNDERSTANDING

More information