L applicazione dei metodi Bayesiani nella Farmacoeconomia
|
|
- Ross Fowler
- 5 years ago
- Views:
Transcription
1 L applicazione dei metodi Bayesiani nella Farmacoeconomia Gianluca Baio Department of Statistical Science, University College London (UK) Department of Statistics, University of Milano Bicocca (Italy) Razionalizzazione della spesa dei farmaci ad alto costo Torino, 5 Ottobre 2012 Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
2 Outline of presentation 1 What is Bayesian statistics? Relationship with standard statistical procedures Prior distributions Bayesian computation 2 How to implement Bayesian statistics in Health Economics? Probabilistic assumptions Decision-theory Sensitivity analysis 3 Example Modelling Cost-effectiveness analysis Probabilistic sensitivity analysis 4 Conclusions Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
3 Outline of presentation 1 What is Bayesian statistics? Relationship with standard statistical procedures Prior distributions Bayesian computation 2 How to implement Bayesian statistics in Health Economics? Probabilistic assumptions Decision-theory Sensitivity analysis 3 Example Modelling Cost-effectiveness analysis Probabilistic sensitivity analysis 4 Conclusions Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
4 Outline of presentation 1 What is Bayesian statistics? Relationship with standard statistical procedures Prior distributions Bayesian computation 2 How to implement Bayesian statistics in Health Economics? Probabilistic assumptions Decision-theory Sensitivity analysis 3 Example Modelling Cost-effectiveness analysis Probabilistic sensitivity analysis 4 Conclusions Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
5 Outline of presentation 1 What is Bayesian statistics? Relationship with standard statistical procedures Prior distributions Bayesian computation 2 How to implement Bayesian statistics in Health Economics? Probabilistic assumptions Decision-theory Sensitivity analysis 3 Example Modelling Cost-effectiveness analysis Probabilistic sensitivity analysis 4 Conclusions Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
6 Variability and statistical models Size N = 10 Mean µ Standard deviation σ Size n = 5 Mean x Standard deviation s x In reality we observe only one such sample (out of the many possible in fact there are 252 different ways of picking at random 5 units out of the population!) and we want to use the information contained in that sample to infer about the population parameters (e.g. the true mean and standard deviation) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
7 Deductive vs inductive inference Hypothesis 1 Hypothesis 2 Hypothesis 3 = 0% = 5% = 10% c 5% 0% 5% 10% 15% c Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
8 Deductive vs inductive inference Deduction Hypothesis 1 Hypothesis 2 Hypothesis 3 = 0% = 5% = 10% c 5% 0% 5% 10% 15% c Standard (frequentist) methods set the value of the parameters (hypotheses) and by deduction infer about the plausibility of the observed data Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
9 Deductive vs inductive inference Deduction Hypothesis 1 Hypothesis 2 Hypothesis 3 Induction = 0% = 5% = 10% c 5% 0% 5% 10% 15% c Standard (frequentist) methods set the value of the parameters (hypotheses) and by deduction infer about the plausibility of the observed data Conversely, Bayesian statistics conditions on the observed data and by induction makes inference on the unobservable parameters (hypotheses) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
10 Bayesian inference p(θ) Prior (subjective knowledge) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
11 Bayesian inference p(y θ) Data (observed evidence) p(θ) Prior (subjective knowledge) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
12 Bayesian inference p(y θ) Data (observed evidence) p(θ) Prior (subjective knowledge) Bayes theorem p(θ)p(y θ) p(y) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
13 Bayesian inference p(y θ) Data (observed evidence) p(θ) Prior (subjective knowledge) Bayes theorem p(θ)p(y θ) p(y) Posterior (updated knowledge) p(θ y) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
14 Bayesian inference updating knowledge Prior Likelihood Posterior θ Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
15 Choice of the prior distribution Non-informative prior Attempts to include minimal information in the prior to let the data speak for themselves (sometimes known as minimally informative ) Need to be careful in defining the scale in which non-informativeness is selected Sometimes helpful as preliminary approximation often leads to essentially the same inference as using maximum likelihood Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
16 Choice of the prior distribution Non-informative prior Attempts to include minimal information in the prior to let the data speak for themselves (sometimes known as minimally informative ) Need to be careful in defining the scale in which non-informativeness is selected Sometimes helpful as preliminary approximation often leads to essentially the same inference as using maximum likelihood Conjugate prior Convenient mathematical formulation Prior and posterior in the same family E.g. Prior = Normal(m 0,s 0) + Data = Normal(µ,σ 2 ) E.g. Posterior = Normal(m 1,s 1) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
17 Choice of the prior distribution Non-informative prior Attempts to include minimal information in the prior to let the data speak for themselves (sometimes known as minimally informative ) Need to be careful in defining the scale in which non-informativeness is selected Sometimes helpful as preliminary approximation often leads to essentially the same inference as using maximum likelihood Conjugate prior Convenient mathematical formulation Prior and posterior in the same family E.g. Prior = Normal(m 0,s 0) + Data = Normal(µ,σ 2 ) E.g. Posterior = Normal(m 1,s 1) Informative prior Proper Bayesian model: express (subjective) knowledge by means of a suitable probability distribution Can be based on hard evidence NB: Informative priors are not necessarily conjugated! Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
18 Non conjugated models Despite their usefulness in computational terms, non-informative and conjugated models are not always the best Too restrictive, might not encode the actual level of prior information Non-informative priors are generally not invariant to scale transformations When more complex (and realistic!) structures considered for instance multiparametric, or generalised linear models conjugacy rarely hold Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
19 Non conjugated models Despite their usefulness in computational terms, non-informative and conjugated models are not always the best Too restrictive, might not encode the actual level of prior information Non-informative priors are generally not invariant to scale transformations When more complex (and realistic!) structures considered for instance multiparametric, or generalised linear models conjugacy rarely hold Since the 1990 s the development of MCMC methods has allowed the use of simulation techniques for Bayesian computation. Software like BUGS 1 or JAGS 2 can be used to perform analysis on most real-life problems If the model is well specified, the level of accuracy of the approximation provided by the simulation technique is very good Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
20 MCMC methods After 10 iterations σ µ Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
21 MCMC methods After 30 iterations σ µ Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
22 MCMC methods After 1000 iterations µ σ Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
23 MCMC methods Burn in Sample after convergence Chain 1 Chain Iteration Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
24 (Bayesian) Decision-making process Typically, we define a health economic response (e, c), where for each intervention (treatment) t e represents a suitable measure of clinical benefits (e.g. QALYs) c are the costs associated with a given intervention Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
25 (Bayesian) Decision-making process Typically, we define a health economic response (e, c), where for each intervention (treatment) t e represents a suitable measure of clinical benefits (e.g. QALYs) c are the costs associated with a given intervention The variables (e,c) are usually defined as functions of a set of relevant parameters θ t which represent some population-level features of the underlying process Probability of some clinical outcome Duration in treatment Reduction in the rate of occurrence of some event Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
26 (Bayesian) Decision-making process Typically, we define a health economic response (e, c), where for each intervention (treatment) t e represents a suitable measure of clinical benefits (e.g. QALYs) c are the costs associated with a given intervention The variables (e,c) are usually defined as functions of a set of relevant parameters θ t which represent some population-level features of the underlying process Probability of some clinical outcome Duration in treatment Reduction in the rate of occurrence of some event There are (at least) two sources of uncertainty Sampling variability is modelled using an intervention-specific distribution p(e,c θ t ) Parametric uncertainty is modelled using a (possibly subjective) prior distribution p(θ t D), based on some background data D NB: Sometimes, we can (should!) consider also structural uncertainty, i.e. about the modelling assumptions used Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
27 (Bayesian) Decision-making process In addition, we define a utility function to describe the quality of t The function u(e, c; t) describes the value associated with applying intervention t, in terms of the future (uncertain) outcomes Uncertainty is expressed through p(e,c,θ) = p(e,c θ)p(θ D) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
28 (Bayesian) Decision-making process In addition, we define a utility function to describe the quality of t The function u(e, c; t) describes the value associated with applying intervention t, in terms of the future (uncertain) outcomes Uncertainty is expressed through p(e,c,θ) = p(e,c θ)p(θ D) NB: typically, the utility function chosen is the monetary net benefit u(e,c;t) := ke t c t k is the willingness to pay, i.e. the cost per extra unit of effectiveness gained Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
29 (Bayesian) Decision-making process In addition, we define a utility function to describe the quality of t The function u(e, c; t) describes the value associated with applying intervention t, in terms of the future (uncertain) outcomes Uncertainty is expressed through p(e,c,θ) = p(e,c θ)p(θ D) NB: typically, the utility function chosen is the monetary net benefit u(e,c;t) := ke t c t k is the willingness to pay, i.e. the cost per extra unit of effectiveness gained Decision making is based on Computing for each intervention t the expected utility U t = E[u(e,c;t)] (computed with respect to both individual and population uncertainty) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
30 (Bayesian) Decision-making process In addition, we define a utility function to describe the quality of t The function u(e, c; t) describes the value associated with applying intervention t, in terms of the future (uncertain) outcomes Uncertainty is expressed through p(e,c,θ) = p(e,c θ)p(θ D) NB: typically, the utility function chosen is the monetary net benefit u(e,c;t) := ke t c t k is the willingness to pay, i.e. the cost per extra unit of effectiveness gained Decision making is based on Computing for each intervention t the expected utility U t = E[u(e,c;t)] (computed with respect to both individual and population uncertainty) Treating the entire homogeneous (sub)population with the most cost-effective treatment, i.e. that associated with the maximum expected utility Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
31 (Bayesian) Decision-making process In addition, we define a utility function to describe the quality of t The function u(e, c; t) describes the value associated with applying intervention t, in terms of the future (uncertain) outcomes Uncertainty is expressed through p(e,c,θ) = p(e,c θ)p(θ D) NB: typically, the utility function chosen is the monetary net benefit u(e,c;t) := ke t c t k is the willingness to pay, i.e. the cost per extra unit of effectiveness gained Decision making is based on Computing for each intervention t the expected utility U t = E[u(e,c;t)] (computed with respect to both individual and population uncertainty) Treating the entire homogeneous (sub)population with the most cost-effective treatment, i.e. that associated with the maximum expected utility Performing sensitivity analysis (to parameter and/or structural uncertainty) to investigate the impact of underlying uncertainty on the decision process Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
32 Example: Chemotherapy t = 0: Old chemotherapy A 0 Ambulatory care (γ) SE 0 Blood-related side effects (π 0) c drug 0 N Standard treatment H 0 Hospital admission (1 γ) A 0 Ambulatory care (γ) N SE 0 No side effects (1 π 0) H 0 Hospital admission (1 γ) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
33 Example: Chemotherapy t = 0: Old chemotherapy A 0 Ambulatory care (γ) c amb SE 0 Blood-related side effects (π 0) c drug 0 N Standard treatment H 0 Hospital admission c hosp (1 γ) A 0 Ambulatory care (γ) c amb N SE 0 No side effects (1 π 0) H 0 Hospital admission c hosp (1 γ) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
34 Example: Chemotherapy t = 1: New chemotherapy A 1 Ambulatory care (γ) c amb SE 1 Blood-related side effects (π 1 = π 0ρ) c drug 1 N New treatment H 1 Hospital admission c hosp (1 γ) A 1 Ambulatory care (γ) c amb N SE 1 No side effects (1 π 1) H 1 Hospital admission c hosp (1 γ) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
35 Prior information vs prior distributions Often, we can use the prior information and formalise it in order to approximate it with a suitable probability distribution Mean 2.5% Median 97.5% Distribution π Beta(27.12, 85.88) ρ Normal(0.8, 0.2) γ Beta(5.80, 13.80) c amb lognormal(4.77, 0.17) c hosp lognormal(8.60, 0.18) c drug c drug Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
36 Prior information vs prior distributions π 0 Beta(27.12, 85.88) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
37 Prior information vs prior distributions Pr(π 0 < ) = Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
38 Prior information vs prior distributions Pr(π 0 < ) = Pr(π 0 > ) = Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
39 Prior information vs prior distributions Pr( π ) = 0.95 Pr(π 0 < ) = Pr(π 0 > ) = Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
40 Bayesian model specification The assumptions underlying the model can be coded in BUGS/JAGS model { pi[1] ~ dbeta(a.pi,b.pi) # Baseline probability of side effects (t=0) pi[2] <- pi[1]*rho # Decreased probability of side effects (t=1) rho ~ dnorm(m.rho,tau.rho) # Decrement rate in side effects for t=1 gamma ~ dbeta(a.gamma,b.gamma) # Probability of ambulatory care c.amb ~ dlnorm(m.amb,tau.amb) # Unit cost of ambulatory care c.hosp ~ dlnorm(m.hosp,tau.hosp) # Unit cost of hospitalisation for (t in 1:2) { SE[t] ~ dbin(pi[t],n) # Predicted no. patients with side effects A[t] ~ dbin(gamma,se[t]) # Predicted no. patients needing ambulatory care H[t] <- SE[t] - A[t] # Predicted no. patients needing hospitalisation } } and then the MCMC analysis can be performed Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
41 Bayesian model specification The assumptions underlying the model can be coded in BUGS/JAGS model { pi[1] ~ dbeta(a.pi,b.pi) # Baseline probability of side effects (t=0) pi[2] <- pi[1]*rho # Decreased probability of side effects (t=1) rho ~ dnorm(m.rho,tau.rho) # Decrement rate in side effects for t=1 gamma ~ dbeta(a.gamma,b.gamma) # Probability of ambulatory care c.amb ~ dlnorm(m.amb,tau.amb) # Unit cost of ambulatory care c.hosp ~ dlnorm(m.hosp,tau.hosp) # Unit cost of hospitalisation for (t in 1:2) { SE[t] ~ dbin(pi[t],n) # Predicted no. patients with side effects A[t] ~ dbin(gamma,se[t]) # Predicted no. patients needing ambulatory care H[t] <- SE[t] - A[t] # Predicted no. patients needing hospitalisation } } and then the MCMC analysis can be performed The MCMC procedure will generate samples from the posterior distributions of the relevant quantities θ t = (π t,γ,ρ,se t,a t,h t,c amb,c hosp,c drug ) These can be combined to compute the variables of cost and benefit, and perform the economic analysis Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
42 Bayesian model convergence A[1] A[2] H[1] A[1] A[2] H[1] iteration iteration iteration H[2] SE[1] SE[2] H[2] SE[1] SE[2] iteration iteration iteration c.hosp c.amb gamma c.hosp c.amb gamma iteration iteration iteration pi[1] pi[2] rho pi[1] pi[2] rho iteration iteration iteration Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
43 Bayesian model posterior distributions π 0 γ ρ SE 0 SE 1 A A 1 H 0 c hosp Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
44 Measures of cost & benefits The total cost associated with each treatment can be computed by multiplying the unit cost of each clinical resource (drug, ambulatory care and hospital admission) by the number of patients consuming it. Thus: c t := c drug t (N SE t )+(c drug t +c amb )A t +(c drug t +c hosp )H t Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
45 Measures of cost & benefits The total cost associated with each treatment can be computed by multiplying the unit cost of each clinical resource (drug, ambulatory care and hospital admission) by the number of patients consuming it. Thus: c t := c drug t (N SE t )+(c drug t +c amb )A t +(c drug t +c hosp )H t Similarly, the measure of effectiveness can be computed as the total number of patients who do not experience side effects e t := (N SE t ) NB: we can (should) extend this to consider QALYs, instead of the hard effectiveness measure in terms of events averted Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
46 Expected incremental benefit Expected Incremental Benefit EIB EIB = U 1 U 0 k* = Willingness to pay Based on the current evidence, choose old chemotherapy if k < 6500 monetary units and new chemotherapy otherwise Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
47 Probabilistic sensitivity analysis (PSA) The quality of the current evidence is often limited During the pre-market authorisation phase, the regulator should decide whether to grant reimbursement to a new product and in some countries also set the price on the basis of uncertain evidence, regarding both clinical and economic outcomes Although it is possible to answer some unresolved questions after market authorisation, relevant decisions such as that on reimbursement (which determines the overall access to the new treatment) have already been taken Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
48 Probabilistic sensitivity analysis (PSA) The quality of the current evidence is often limited During the pre-market authorisation phase, the regulator should decide whether to grant reimbursement to a new product and in some countries also set the price on the basis of uncertain evidence, regarding both clinical and economic outcomes Although it is possible to answer some unresolved questions after market authorisation, relevant decisions such as that on reimbursement (which determines the overall access to the new treatment) have already been taken This leads to the necessity of performing (probabilistic) sensitivity analysis (PSA) Formal quantification of the impact of uncertainty in the parameters on the results of the economic model Standard requirement in many health systems (e.g. for NICE in the UK), but still not universally applied Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
49 PSA to parameter uncertainty Parameters Model structure Decision analysis Old chemotherapy π 0 SE0 Blood-related side effects (π0) A0 Ambulatory care (γ) c amb Old chemotherapy Benefits Costs H0 Hospital admission (1 γ) c hosp c drug 0 N Standard treatment ρ A0 Ambulatory care (γ) c amb N SE0 No side effects (1 π0) H0 Hospital admission (1 γ) c hosp γ New chemotherapy A1 Ambulatory care (γ) c amb New chemotherapy Benefits Costs SE1 Blood-related side effects (π1 = π0ρ) H1 Hospital admission (1 γ) c hosp c hosp c drug 1 N New treatment N SE1 No side effects (1 π1) A1 Ambulatory care (γ) c amb ICER = QALY H1 Hospital admission (1 γ) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27 c hosp
50 PSA to parameter uncertainty Parameters Model structure Decision analysis Old chemotherapy x π SE0 Blood-related side effects (π0) A0 Ambulatory care (γ) H0 Hospital admission (1 γ) c amb c hosp Old chemotherapy Benefits Costs c drug 0 N Standard treatment ρ A0 Ambulatory care (γ) c amb N SE0 No side effects (1 π0) x γ New chemotherapy H0 Hospital admission (1 γ) A1 Ambulatory care (γ) c hosp c amb New chemotherapy Benefits Costs x SE1 Blood-related side effects (π1 = π0ρ) H1 Hospital admission (1 γ) c hosp x c hosp c drug 1 N New treatment N SE1 No side effects (1 π1) A1 Ambulatory care (γ) c amb ICER = QALY H1 Hospital admission (1 γ) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27 c hosp
51 PSA to parameter uncertainty Parameters Model structure Decision analysis Old chemotherapy x π SE0 Blood-related side effects (π0) A0 Ambulatory care (γ) H0 Hospital admission (1 γ) c amb c hosp Old chemotherapy Benefits Costs c drug 0 N Standard treatment ρ A0 Ambulatory care (γ) c amb N SE0 No side effects (1 π0) x γ New chemotherapy H0 Hospital admission (1 γ) A1 Ambulatory care (γ) c hosp c amb New chemotherapy Benefits Costs x SE1 Blood-related side effects (π1 = π0ρ) H1 Hospital admission (1 γ) c hosp x c hosp c drug 1 N New treatment N SE1 No side effects (1 π1) A1 Ambulatory care (γ) c amb ICER = QALY H1 Hospital admission (1 γ) Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27 c hosp
52 PSA to parameter uncertainty Parameters Model structure Decision analysis Old chemotherapy π 0 x ρ c drug 0 N Standard treatment SE0 Blood-related side effects (π0) A0 Ambulatory care (γ) H0 Hospital admission (1 γ) A0 Ambulatory care (γ) c amb c hosp c amb Old chemotherapy Benefits Costs N SE0 No side effects (1 π0) x x γ New chemotherapy SE1 Blood-related side effects (π1 = π0ρ) H0 Hospital admission (1 γ) A1 Ambulatory care (γ) H1 Hospital admission (1 γ) c hosp c amb c hosp New chemotherapy Benefits Costs c hosp x c drug 1 N New treatment N SE1 No side effects (1 π1) A1 Ambulatory care (γ) H1 Hospital admission (1 γ) c amb c hosp ICER = ICER= Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
53 Cost-effectiveness plane Cost effectiveness plane contour plot New Chemotherapy vs Old Chemotherapy Pr( e 0, c > 0) = 0.19 Pr( e > 0, c > 0) = Cost differential Pr( e 0, c 0) = 0 Pr( e > 0, c 0) = Effectiveness differential Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
54 Cost-effectiveness plane The economic analysis depends on the willingness-to-pay, which determines the sustainability area Cost effectiveness plane New Chemotherapy vs Old Chemotherapy ICER= Cost differential k = Effectiveness differential Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
55 Cost-effectiveness plane The economic analysis depends on the willingness-to-pay, which determines the sustainability area Cost effectiveness plane New Chemotherapy vs Old Chemotherapy Cost effectiveness plane New Chemotherapy vs Old Chemotherapy ICER= ICER= Cost differential k = Cost differential k = Effectiveness differential Effectiveness differential Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
56 Summarising PSA For any given value of the willingness-to-pay k, we can analyse the possible futures For example, consider k = monetary units Parameters simulations Expected Incremental t = 0 t = 1 utility benefit Iter/n Benefits Costs Benefits Costs U(θ 0 ) U(θ 1 ) IB(θ) U 0 = U 1 = EIB= One way of summarising PSA is to compute the cost-effectiveness acceptability curve CEAC = Pr(IB(θ) D) > 0 Upon varying k, this is the probability that the optimal decision would not be reversed by reduced uncertainty Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
57 Summarising PSA Cost Effectiveness Acceptability Curve Probability of cost effectiveness Willingness to pay Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
58 Summarising PSA NB: CEACs only quantify the probability of cost-effectiveness, but do not say anything about the payoffs associated with taking the wrong decision Parameters simulations Expected Maximum Opportunity t = 0 t = 1 utility utility loss Iter/n Benefits Costs Benefits Costs U(θ 0 ) U(θ 1 ) U (θ) OL(θ) EVDI= At each iteration, the OL is the difference between the maximum utility and the value associated with the intervention with the maximum utility overall The expected value of information is the average opportunity loss EVDI = E[OL(θ)] and quantifies the value of getting more information to reduce uncertainty Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
59 Summarising PSA Expected Value of Information EVPI Willingness to pay Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
60 Conclusions Bayesian modelling allows the incorporation of external, additional information to the current analysis This can come in the form of Previous studies Elicitation of expert opinions Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
61 Conclusions Bayesian modelling allows the incorporation of external, additional information to the current analysis This can come in the form of Previous studies Elicitation of expert opinions In general, Bayesian models are more flexible and allow the inclusion of complex relationships between variables and parameters This is particularly effective in decision-models, where information from different sources may be combined into a single framework Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
62 Conclusions Bayesian modelling allows the incorporation of external, additional information to the current analysis This can come in the form of Previous studies Elicitation of expert opinions In general, Bayesian models are more flexible and allow the inclusion of complex relationships between variables and parameters This is particularly effective in decision-models, where information from different sources may be combined into a single framework Using MCMC methods, it is possible to produce the results in terms of simulations from the posterior distributions These can be used to build suitable variables of cost and benefit Particularly effective for running probabilistic sensitivity analysis Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
63 More info (and shameless marketing) It is possible to standardise the economic analysis derived from the output of a Bayesian model, for example using the R package BCEA BCEA features heavily in the brilliant, forthcoming book on Bayesian methods in health economics (written by me ) In the book, I describe the entire process of making Bayesian analysis in health economics, including pre-processing of the data and running the model Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
64 More info (and shameless marketing) It is possible to standardise the economic analysis derived from the output of a Bayesian model, for example using the R package BCEA BCEA features heavily in the brilliant, forthcoming book on Bayesian methods in health economics (written by me ) In the book, I describe the entire process of making Bayesian analysis in health economics, including pre-processing of the data and running the model More info is available at the webpages and Also, some discussion (and more to come) in a few posts on gianlubaio.blogspot.co.uk Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
65 Thank you! Gianluca Baio ( UCL) Metodi Bayesiani in Farmacoeconomia Torino, 5 Ottobre / 27
Fast approximations for the Expected Value of Partial Perfect Information using R-INLA
Fast approximations for the Expected Value of Partial Perfect Information using R-INLA Anna Heath 1 1 Department of Statistical Science, University College London 22 May 2015 Outline 1 Health Economic
More informationChapter 5. Bayesian Statistics
Chapter 5. Bayesian Statistics Principles of Bayesian Statistics Anything unknown is given a probability distribution, representing degrees of belief [subjective probability]. Degrees of belief [subjective
More informationDecision theory. 1 We may also consider randomized decision rules, where δ maps observed data D to a probability distribution over
Point estimation Suppose we are interested in the value of a parameter θ, for example the unknown bias of a coin. We have already seen how one may use the Bayesian method to reason about θ; namely, we
More informationSTAT 499/962 Topics in Statistics Bayesian Inference and Decision Theory Jan 2018, Handout 01
STAT 499/962 Topics in Statistics Bayesian Inference and Decision Theory Jan 2018, Handout 01 Nasser Sadeghkhani a.sadeghkhani@queensu.ca There are two main schools to statistical inference: 1-frequentist
More informationCase Study in the Use of Bayesian Hierarchical Modeling and Simulation for Design and Analysis of a Clinical Trial
Case Study in the Use of Bayesian Hierarchical Modeling and Simulation for Design and Analysis of a Clinical Trial William R. Gillespie Pharsight Corporation Cary, North Carolina, USA PAGE 2003 Verona,
More informationWorkshop 12: ARE MISSING DATA PROPERLY ACCOUNTED FOR IN HEALTH ECONOMICS AND OUTCOMES RESEARCH?
Workshop 12: ARE MISSING DATA PROPERLY ACCOUNTED FOR IN HEALTH ECONOMICS AND OUTCOMES RESEARCH? ISPOR Europe 2018 Barcelona, Spain Tuesday, 13 November 2018 15:30 16:30 ISPOR Statistical Methods in HEOR
More informationIntroduction to Applied Bayesian Modeling. ICPSR Day 4
Introduction to Applied Bayesian Modeling ICPSR Day 4 Simple Priors Remember Bayes Law: Where P(A) is the prior probability of A Simple prior Recall the test for disease example where we specified the
More informationStructural Uncertainty in Health Economic Decision Models
Structural Uncertainty in Health Economic Decision Models Mark Strong 1, Hazel Pilgrim 1, Jeremy Oakley 2, Jim Chilcott 1 December 2009 1. School of Health and Related Research, University of Sheffield,
More informationPrinciples of Bayesian Inference
Principles of Bayesian Inference Sudipto Banerjee 1 and Andrew O. Finley 2 1 Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, U.S.A. 2 Department of Forestry & Department
More informationBayesian Inference. p(y)
Bayesian Inference There are different ways to interpret a probability statement in a real world setting. Frequentist interpretations of probability apply to situations that can be repeated many times,
More informationStatistical Methods in Particle Physics Lecture 1: Bayesian methods
Statistical Methods in Particle Physics Lecture 1: Bayesian methods SUSSP65 St Andrews 16 29 August 2009 Glen Cowan Physics Department Royal Holloway, University of London g.cowan@rhul.ac.uk www.pp.rhul.ac.uk/~cowan
More informationBayesian Statistical Methods. Jeff Gill. Department of Political Science, University of Florida
Bayesian Statistical Methods Jeff Gill Department of Political Science, University of Florida 234 Anderson Hall, PO Box 117325, Gainesville, FL 32611-7325 Voice: 352-392-0262x272, Fax: 352-392-8127, Email:
More informationEstimating the expected value of partial perfect information in health economic evaluations using integrated nested Laplace approximation
Research Article Received 9 October 2015, Accepted 18 April 2016 Published online 18 May 2016 in Wiley Online Library (wileyonlinelibrary.com) DOI: 10.1002/sim.6983 Estimating the expected value of partial
More informationOne-parameter models
One-parameter models Patrick Breheny January 22 Patrick Breheny BST 701: Bayesian Modeling in Biostatistics 1/17 Introduction Binomial data is not the only example in which Bayesian solutions can be worked
More informationComputational Perception. Bayesian Inference
Computational Perception 15-485/785 January 24, 2008 Bayesian Inference The process of probabilistic inference 1. define model of problem 2. derive posterior distributions and estimators 3. estimate parameters
More informationBayesian Regression Linear and Logistic Regression
When we want more than point estimates Bayesian Regression Linear and Logistic Regression Nicole Beckage Ordinary Least Squares Regression and Lasso Regression return only point estimates But what if we
More informationPreliminary Statistics Lecture 2: Probability Theory (Outline) prelimsoas.webs.com
1 School of Oriental and African Studies September 2015 Department of Economics Preliminary Statistics Lecture 2: Probability Theory (Outline) prelimsoas.webs.com Gujarati D. Basic Econometrics, Appendix
More information9/12/17. Types of learning. Modeling data. Supervised learning: Classification. Supervised learning: Regression. Unsupervised learning: Clustering
Types of learning Modeling data Supervised: we know input and targets Goal is to learn a model that, given input data, accurately predicts target data Unsupervised: we know the input only and want to make
More informationBAYESIAN METHODS FOR VARIABLE SELECTION WITH APPLICATIONS TO HIGH-DIMENSIONAL DATA
BAYESIAN METHODS FOR VARIABLE SELECTION WITH APPLICATIONS TO HIGH-DIMENSIONAL DATA Intro: Course Outline and Brief Intro to Marina Vannucci Rice University, USA PASI-CIMAT 04/28-30/2010 Marina Vannucci
More informationTime Series and Dynamic Models
Time Series and Dynamic Models Section 1 Intro to Bayesian Inference Carlos M. Carvalho The University of Texas at Austin 1 Outline 1 1. Foundations of Bayesian Statistics 2. Bayesian Estimation 3. The
More informationDavid Giles Bayesian Econometrics
David Giles Bayesian Econometrics 1. General Background 2. Constructing Prior Distributions 3. Properties of Bayes Estimators and Tests 4. Bayesian Analysis of the Multiple Regression Model 5. Bayesian
More informationParametric Models. Dr. Shuang LIANG. School of Software Engineering TongJi University Fall, 2012
Parametric Models Dr. Shuang LIANG School of Software Engineering TongJi University Fall, 2012 Today s Topics Maximum Likelihood Estimation Bayesian Density Estimation Today s Topics Maximum Likelihood
More informationLecture 13 Fundamentals of Bayesian Inference
Lecture 13 Fundamentals of Bayesian Inference Dennis Sun Stats 253 August 11, 2014 Outline of Lecture 1 Bayesian Models 2 Modeling Correlations Using Bayes 3 The Universal Algorithm 4 BUGS 5 Wrapping Up
More informationProbability Review - Bayes Introduction
Probability Review - Bayes Introduction Statistics 220 Spring 2005 Copyright c 2005 by Mark E. Irwin Advantages of Bayesian Analysis Answers the questions that researchers are usually interested in, What
More informationIntroduction to Bayesian Inference
Introduction to Bayesian Inference p. 1/2 Introduction to Bayesian Inference September 15th, 2010 Reading: Hoff Chapter 1-2 Introduction to Bayesian Inference p. 2/2 Probability: Measurement of Uncertainty
More informationBayesian Inference. Introduction
Bayesian Inference Introduction The frequentist approach to inference holds that probabilities are intrinsicially tied (unsurprisingly) to frequencies. This interpretation is actually quite natural. What,
More informationBayesian model selection: methodology, computation and applications
Bayesian model selection: methodology, computation and applications David Nott Department of Statistics and Applied Probability National University of Singapore Statistical Genomics Summer School Program
More informationParameter estimation and forecasting. Cristiano Porciani AIfA, Uni-Bonn
Parameter estimation and forecasting Cristiano Porciani AIfA, Uni-Bonn Questions? C. Porciani Estimation & forecasting 2 Temperature fluctuations Variance at multipole l (angle ~180o/l) C. Porciani Estimation
More informationWhether to use MMRM as primary estimand.
Whether to use MMRM as primary estimand. James Roger London School of Hygiene & Tropical Medicine, London. PSI/EFSPI European Statistical Meeting on Estimands. Stevenage, UK: 28 September 2015. 1 / 38
More informationPrinciples of Bayesian Inference
Principles of Bayesian Inference Sudipto Banerjee and Andrew O. Finley 2 Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, U.S.A. 2 Department of Forestry & Department
More informationLecture Slides - Part 1
Lecture Slides - Part 1 Bengt Holmstrom MIT February 2, 2016. Bengt Holmstrom (MIT) Lecture Slides - Part 1 February 2, 2016. 1 / 36 Going to raise the level a little because 14.281 is now taught by Juuso
More informationEstimation of reliability parameters from Experimental data (Parte 2) Prof. Enrico Zio
Estimation of reliability parameters from Experimental data (Parte 2) This lecture Life test (t 1,t 2,...,t n ) Estimate θ of f T t θ For example: λ of f T (t)= λe - λt Classical approach (frequentist
More informationBayesian Updating: Discrete Priors: Spring
Bayesian Updating: Discrete Priors: 18.05 Spring 2017 http://xkcd.com/1236/ Learning from experience Which treatment would you choose? 1. Treatment 1: cured 100% of patients in a trial. 2. Treatment 2:
More informationComparison of Three Calculation Methods for a Bayesian Inference of Two Poisson Parameters
Journal of Modern Applied Statistical Methods Volume 13 Issue 1 Article 26 5-1-2014 Comparison of Three Calculation Methods for a Bayesian Inference of Two Poisson Parameters Yohei Kawasaki Tokyo University
More informationClinical Trials. Olli Saarela. September 18, Dalla Lana School of Public Health University of Toronto.
Introduction to Dalla Lana School of Public Health University of Toronto olli.saarela@utoronto.ca September 18, 2014 38-1 : a review 38-2 Evidence Ideal: to advance the knowledge-base of clinical medicine,
More informationSTAT J535: Chapter 5: Classes of Bayesian Priors
STAT J535: Chapter 5: Classes of Bayesian Priors David B. Hitchcock E-Mail: hitchcock@stat.sc.edu Spring 2012 The Bayesian Prior A prior distribution must be specified in a Bayesian analysis. The choice
More informationA primer on Bayesian statistics, with an application to mortality rate estimation
A primer on Bayesian statistics, with an application to mortality rate estimation Peter off University of Washington Outline Subjective probability Practical aspects Application to mortality rate estimation
More informationCS-E3210 Machine Learning: Basic Principles
CS-E3210 Machine Learning: Basic Principles Lecture 4: Regression II slides by Markus Heinonen Department of Computer Science Aalto University, School of Science Autumn (Period I) 2017 1 / 61 Today s introduction
More informationEvaluating the value of structural heath monitoring with longitudinal performance indicators and hazard functions using Bayesian dynamic predictions
Evaluating the value of structural heath monitoring with longitudinal performance indicators and hazard functions using Bayesian dynamic predictions C. Xing, R. Caspeele, L. Taerwe Ghent University, Department
More informationStatistical Tools and Techniques for Solar Astronomers
Statistical Tools and Techniques for Solar Astronomers Alexander W Blocker Nathan Stein SolarStat 2012 Outline Outline 1 Introduction & Objectives 2 Statistical issues with astronomical data 3 Example:
More informationBios 6649: Clinical Trials - Statistical Design and Monitoring
Bios 6649: Clinical Trials - Statistical Design and Monitoring Spring Semester 2015 John M. Kittelson Department of Biostatistics & nformatics Colorado School of Public Health University of Colorado Denver
More informationBayesian Model Specification: Toward a Theory of Applied Statistics
Bayesian Model Specification: Toward a Theory of Applied Statistics David Draper Department of Applied Mathematics and Statistics University of California, Santa Cruz draper@ams.ucsc.edu www.ams.ucsc.edu/
More informationHierarchical Models & Bayesian Model Selection
Hierarchical Models & Bayesian Model Selection Geoffrey Roeder Departments of Computer Science and Statistics University of British Columbia Jan. 20, 2016 Contact information Please report any typos or
More informationA Discussion of the Bayesian Approach
A Discussion of the Bayesian Approach Reference: Chapter 10 of Theoretical Statistics, Cox and Hinkley, 1974 and Sujit Ghosh s lecture notes David Madigan Statistics The subject of statistics concerns
More informationMiscellany : Long Run Behavior of Bayesian Methods; Bayesian Experimental Design (Lecture 4)
Miscellany : Long Run Behavior of Bayesian Methods; Bayesian Experimental Design (Lecture 4) Tom Loredo Dept. of Astronomy, Cornell University http://www.astro.cornell.edu/staff/loredo/bayes/ Bayesian
More informationBayesian Methods. David S. Rosenberg. New York University. March 20, 2018
Bayesian Methods David S. Rosenberg New York University March 20, 2018 David S. Rosenberg (New York University) DS-GA 1003 / CSCI-GA 2567 March 20, 2018 1 / 38 Contents 1 Classical Statistics 2 Bayesian
More informationLecture 3. Univariate Bayesian inference: conjugate analysis
Summary Lecture 3. Univariate Bayesian inference: conjugate analysis 1. Posterior predictive distributions 2. Conjugate analysis for proportions 3. Posterior predictions for proportions 4. Conjugate analysis
More informationCS 361: Probability & Statistics
March 14, 2018 CS 361: Probability & Statistics Inference The prior From Bayes rule, we know that we can express our function of interest as Likelihood Prior Posterior The right hand side contains the
More informationBayesian vs frequentist techniques for the analysis of binary outcome data
1 Bayesian vs frequentist techniques for the analysis of binary outcome data By M. Stapleton Abstract We compare Bayesian and frequentist techniques for analysing binary outcome data. Such data are commonly
More informationComputational Cognitive Science
Computational Cognitive Science Lecture 8: Frank Keller School of Informatics University of Edinburgh keller@inf.ed.ac.uk Based on slides by Sharon Goldwater October 14, 2016 Frank Keller Computational
More informationBayesian Methods for Machine Learning
Bayesian Methods for Machine Learning CS 584: Big Data Analytics Material adapted from Radford Neal s tutorial (http://ftp.cs.utoronto.ca/pub/radford/bayes-tut.pdf), Zoubin Ghahramni (http://hunch.net/~coms-4771/zoubin_ghahramani_bayesian_learning.pdf),
More informationPrinciples of Bayesian Inference
Principles of Bayesian Inference Sudipto Banerjee University of Minnesota July 20th, 2008 1 Bayesian Principles Classical statistics: model parameters are fixed and unknown. A Bayesian thinks of parameters
More informationProbabilistic modeling. The slides are closely adapted from Subhransu Maji s slides
Probabilistic modeling The slides are closely adapted from Subhransu Maji s slides Overview So far the models and algorithms you have learned about are relatively disconnected Probabilistic modeling framework
More informationProbability, Entropy, and Inference / More About Inference
Probability, Entropy, and Inference / More About Inference Mário S. Alvim (msalvim@dcc.ufmg.br) Information Theory DCC-UFMG (2018/02) Mário S. Alvim (msalvim@dcc.ufmg.br) Probability, Entropy, and Inference
More informationBayesian inference. Rasmus Waagepetersen Department of Mathematics Aalborg University Denmark. April 10, 2017
Bayesian inference Rasmus Waagepetersen Department of Mathematics Aalborg University Denmark April 10, 2017 1 / 22 Outline for today A genetic example Bayes theorem Examples Priors Posterior summaries
More informationECE521 week 3: 23/26 January 2017
ECE521 week 3: 23/26 January 2017 Outline Probabilistic interpretation of linear regression - Maximum likelihood estimation (MLE) - Maximum a posteriori (MAP) estimation Bias-variance trade-off Linear
More informationConfidence Distribution
Confidence Distribution Xie and Singh (2013): Confidence distribution, the frequentist distribution estimator of a parameter: A Review Céline Cunen, 15/09/2014 Outline of Article Introduction The concept
More informationBayesian Statistics. State University of New York at Buffalo. From the SelectedWorks of Joseph Lucke. Joseph F. Lucke
State University of New York at Buffalo From the SelectedWorks of Joseph Lucke 2009 Bayesian Statistics Joseph F. Lucke Available at: https://works.bepress.com/joseph_lucke/6/ Bayesian Statistics Joseph
More informationProbability and Estimation. Alan Moses
Probability and Estimation Alan Moses Random variables and probability A random variable is like a variable in algebra (e.g., y=e x ), but where at least part of the variability is taken to be stochastic.
More informationBayesian inference. Fredrik Ronquist and Peter Beerli. October 3, 2007
Bayesian inference Fredrik Ronquist and Peter Beerli October 3, 2007 1 Introduction The last few decades has seen a growing interest in Bayesian inference, an alternative approach to statistical inference.
More informationBayesian Updating: Discrete Priors: Spring
Bayesian Updating: Discrete Priors: 18.05 Spring 2017 http://xkcd.com/1236/ Learning from experience Which treatment would you choose? 1. Treatment 1: cured 100% of patients in a trial. 2. Treatment 2:
More informationBasic Probabilistic Reasoning SEG
Basic Probabilistic Reasoning SEG 7450 1 Introduction Reasoning under uncertainty using probability theory Dealing with uncertainty is one of the main advantages of an expert system over a simple decision
More informationIntroduction: MLE, MAP, Bayesian reasoning (28/8/13)
STA561: Probabilistic machine learning Introduction: MLE, MAP, Bayesian reasoning (28/8/13) Lecturer: Barbara Engelhardt Scribes: K. Ulrich, J. Subramanian, N. Raval, J. O Hollaren 1 Classifiers In this
More informationCOMPOSITIONAL IDEAS IN THE BAYESIAN ANALYSIS OF CATEGORICAL DATA WITH APPLICATION TO DOSE FINDING CLINICAL TRIALS
COMPOSITIONAL IDEAS IN THE BAYESIAN ANALYSIS OF CATEGORICAL DATA WITH APPLICATION TO DOSE FINDING CLINICAL TRIALS M. Gasparini and J. Eisele 2 Politecnico di Torino, Torino, Italy; mauro.gasparini@polito.it
More informationBayesian analysis in nuclear physics
Bayesian analysis in nuclear physics Ken Hanson T-16, Nuclear Physics; Theoretical Division Los Alamos National Laboratory Tutorials presented at LANSCE Los Alamos Neutron Scattering Center July 25 August
More information(5) Multi-parameter models - Gibbs sampling. ST440/540: Applied Bayesian Analysis
Summarizing a posterior Given the data and prior the posterior is determined Summarizing the posterior gives parameter estimates, intervals, and hypothesis tests Most of these computations are integrals
More informationCOMP 551 Applied Machine Learning Lecture 19: Bayesian Inference
COMP 551 Applied Machine Learning Lecture 19: Bayesian Inference Associate Instructor: (herke.vanhoof@mcgill.ca) Class web page: www.cs.mcgill.ca/~jpineau/comp551 Unless otherwise noted, all material posted
More informationBayesian Analysis for Natural Language Processing Lecture 2
Bayesian Analysis for Natural Language Processing Lecture 2 Shay Cohen February 4, 2013 Administrativia The class has a mailing list: coms-e6998-11@cs.columbia.edu Need two volunteers for leading a discussion
More informationCPSC 540: Machine Learning
CPSC 540: Machine Learning MCMC and Non-Parametric Bayes Mark Schmidt University of British Columbia Winter 2016 Admin I went through project proposals: Some of you got a message on Piazza. No news is
More informationThe Metropolis-Hastings Algorithm. June 8, 2012
The Metropolis-Hastings Algorithm June 8, 22 The Plan. Understand what a simulated distribution is 2. Understand why the Metropolis-Hastings algorithm works 3. Learn how to apply the Metropolis-Hastings
More informationBayesian Inference for Normal Mean
Al Nosedal. University of Toronto. November 18, 2015 Likelihood of Single Observation The conditional observation distribution of y µ is Normal with mean µ and variance σ 2, which is known. Its density
More informationStats 579 Intermediate Bayesian Modeling. Assignment # 2 Solutions
Stats 579 Intermediate Bayesian Modeling Assignment # 2 Solutions 1. Let w Gy) with y a vector having density fy θ) and G having a differentiable inverse function. Find the density of w in general and
More informationBayesian Inference and MCMC
Bayesian Inference and MCMC Aryan Arbabi Partly based on MCMC slides from CSC412 Fall 2018 1 / 18 Bayesian Inference - Motivation Consider we have a data set D = {x 1,..., x n }. E.g each x i can be the
More informationProbabilistic Machine Learning
Probabilistic Machine Learning Bayesian Nets, MCMC, and more Marek Petrik 4/18/2017 Based on: P. Murphy, K. (2012). Machine Learning: A Probabilistic Perspective. Chapter 10. Conditional Independence Independent
More informationContents. Decision Making under Uncertainty 1. Meanings of uncertainty. Classical interpretation
Contents Decision Making under Uncertainty 1 elearning resources Prof. Ahti Salo Helsinki University of Technology http://www.dm.hut.fi Meanings of uncertainty Interpretations of probability Biases in
More informationBayesian Phylogenetics:
Bayesian Phylogenetics: an introduction Marc A. Suchard msuchard@ucla.edu UCLA Who is this man? How sure are you? The one true tree? Methods we ve learned so far try to find a single tree that best describes
More informationBayesian Inference: Concept and Practice
Inference: Concept and Practice fundamentals Johan A. Elkink School of Politics & International Relations University College Dublin 5 June 2017 1 2 3 Bayes theorem In order to estimate the parameters of
More informationStatistical Decision Theory and Bayesian Analysis Chapter1 Basic Concepts. Outline. Introduction. Introduction(cont.) Basic Elements (cont.
Statistical Decision Theory and Bayesian Analysis Chapter Basic Concepts 939 Outline Introduction Basic Elements Bayesian Epected Loss Frequentist Risk Randomized Decision Rules Decision Principles Misuse
More informationANALYTIC COMPARISON. Pearl and Rubin CAUSAL FRAMEWORKS
ANALYTIC COMPARISON of Pearl and Rubin CAUSAL FRAMEWORKS Content Page Part I. General Considerations Chapter 1. What is the question? 16 Introduction 16 1. Randomization 17 1.1 An Example of Randomization
More informationan introduction to bayesian inference
with an application to network analysis http://jakehofman.com january 13, 2010 motivation would like models that: provide predictive and explanatory power are complex enough to describe observed phenomena
More informationSTAT 425: Introduction to Bayesian Analysis
STAT 425: Introduction to Bayesian Analysis Marina Vannucci Rice University, USA Fall 2017 Marina Vannucci (Rice University, USA) Bayesian Analysis (Part 1) Fall 2017 1 / 10 Lecture 7: Prior Types Subjective
More informationHow to predict the probability of a major nuclear accident after Fukushima Da
How to predict the probability of a major nuclear accident after Fukushima Dai-ichi? CERNA Mines ParisTech March 14, 2012 1 2 Frequentist approach Bayesian approach Issues 3 Allowing safety progress Dealing
More information2016 SISG Module 17: Bayesian Statistics for Genetics Lecture 3: Binomial Sampling
2016 SISG Module 17: Bayesian Statistics for Genetics Lecture 3: Binomial Sampling Jon Wakefield Departments of Statistics and Biostatistics University of Washington Outline Introduction and Motivating
More informationMODULE -4 BAYEIAN LEARNING
MODULE -4 BAYEIAN LEARNING CONTENT Introduction Bayes theorem Bayes theorem and concept learning Maximum likelihood and Least Squared Error Hypothesis Maximum likelihood Hypotheses for predicting probabilities
More informationA Probabilistic Framework for solving Inverse Problems. Lambros S. Katafygiotis, Ph.D.
A Probabilistic Framework for solving Inverse Problems Lambros S. Katafygiotis, Ph.D. OUTLINE Introduction to basic concepts of Bayesian Statistics Inverse Problems in Civil Engineering Probabilistic Model
More informationPart 3 Robust Bayesian statistics & applications in reliability networks
Tuesday 9:00-12:30 Part 3 Robust Bayesian statistics & applications in reliability networks by Gero Walter 69 Robust Bayesian statistics & applications in reliability networks Outline Robust Bayesian Analysis
More informationIndividualized Treatment Effects with Censored Data via Nonparametric Accelerated Failure Time Models
Individualized Treatment Effects with Censored Data via Nonparametric Accelerated Failure Time Models Nicholas C. Henderson Thomas A. Louis Gary Rosner Ravi Varadhan Johns Hopkins University July 31, 2018
More informationIntroduction to Probabilistic Machine Learning
Introduction to Probabilistic Machine Learning Piyush Rai Dept. of CSE, IIT Kanpur (Mini-course 1) Nov 03, 2015 Piyush Rai (IIT Kanpur) Introduction to Probabilistic Machine Learning 1 Machine Learning
More informationBayesian Inference for Regression Parameters
Bayesian Inference for Regression Parameters 1 Bayesian inference for simple linear regression parameters follows the usual pattern for all Bayesian analyses: 1. Form a prior distribution over all unknown
More informationBayesian Meta-analysis with Hierarchical Modeling Brian P. Hobbs 1
Bayesian Meta-analysis with Hierarchical Modeling Brian P. Hobbs 1 Division of Biostatistics, School of Public Health, University of Minnesota, Mayo Mail Code 303, Minneapolis, Minnesota 55455 0392, U.S.A.
More informationUse of frequentist and Bayesian approaches for extrapolating from adult efficacy data to design and interpret confirmatory trials in children
Use of frequentist and Bayesian approaches for extrapolating from adult efficacy data to design and interpret confirmatory trials in children Lisa Hampson, Franz Koenig and Martin Posch Department of Mathematics
More informationBios 6649: Clinical Trials - Statistical Design and Monitoring
Bios 6649: Clinical Trials - Statistical Design and Monitoring Spring Semester 2015 John M. Kittelson Department of Biostatistics & Informatics Colorado School of Public Health University of Colorado Denver
More informationUnobservable Parameter. Observed Random Sample. Calculate Posterior. Choosing Prior. Conjugate prior. population proportion, p prior:
Pi Priors Unobservable Parameter population proportion, p prior: π ( p) Conjugate prior π ( p) ~ Beta( a, b) same PDF family exponential family only Posterior π ( p y) ~ Beta( a + y, b + n y) Observed
More informationA Note on Lenk s Correction of the Harmonic Mean Estimator
Central European Journal of Economic Modelling and Econometrics Note on Lenk s Correction of the Harmonic Mean Estimator nna Pajor, Jacek Osiewalski Submitted: 5.2.203, ccepted: 30.0.204 bstract The paper
More informationPenalized Loss functions for Bayesian Model Choice
Penalized Loss functions for Bayesian Model Choice Martyn International Agency for Research on Cancer Lyon, France 13 November 2009 The pure approach For a Bayesian purist, all uncertainty is represented
More informationIntroduction into Bayesian statistics
Introduction into Bayesian statistics Maxim Kochurov EF MSU November 15, 2016 Maxim Kochurov Introduction into Bayesian statistics EF MSU 1 / 7 Content 1 Framework Notations 2 Difference Bayesians vs Frequentists
More informationLecture 5. G. Cowan Lectures on Statistical Data Analysis Lecture 5 page 1
Lecture 5 1 Probability (90 min.) Definition, Bayes theorem, probability densities and their properties, catalogue of pdfs, Monte Carlo 2 Statistical tests (90 min.) general concepts, test statistics,
More informationBayesian Inference. Chris Mathys Wellcome Trust Centre for Neuroimaging UCL. London SPM Course
Bayesian Inference Chris Mathys Wellcome Trust Centre for Neuroimaging UCL London SPM Course Thanks to Jean Daunizeau and Jérémie Mattout for previous versions of this talk A spectacular piece of information
More informationStatistical learning. Chapter 20, Sections 1 3 1
Statistical learning Chapter 20, Sections 1 3 Chapter 20, Sections 1 3 1 Outline Bayesian learning Maximum a posteriori and maximum likelihood learning Bayes net learning ML parameter learning with complete
More informationModel Averaging (Bayesian Learning)
Model Averaging (Bayesian Learning) We want to predict the output Y of a new case that has input X = x given the training examples e: p(y x e) = m M P(Y m x e) = m M P(Y m x e)p(m x e) = m M P(Y m x)p(m
More information