STAT5044: Regression and Anova

Size: px
Start display at page:

Download "STAT5044: Regression and Anova"

Transcription

1 STAT5044: Regression and Anova Inyoung Kim 1 / 15

2 Outline 1 Fitting GLMs 2 / 15

3 Fitting GLMS We study how to find the maxlimum likelihood estimator ˆβ of GLM parameters The likelihood equaions are usually nonlinear in ˆβ We describe a general-purpose iterative method for solving nonlinear equations and apply it two ways to determine the maximum of a likelihood function 3 / 15

4 Fitting GLMS Newton-Raphson method Fisher scoring method Reweighted Least Squares 4 / 15

5 Newton-Raphson method The Newton-Raphson method is an iterative method for solving nonlinear equations, such as equations whose solution determines the point at which a function takes its maximum. It begins with an initial guess for the solution. It obtains a second guess by approximating the function to be maximized in a neighborhod of the initial guess by a second-degree Then we find the location of that polynomial s maximum value. It then approximates the function in a neighborhood of the second guess by another second-order polynomial, and the third guess is the location of its maximum. In this manner, the method generates a sequences of guesses. These converge to the location of the maximum when the function is suitable and /or the initial guess is good. 5 / 15

6 Newton-Raphson method Here s how Newton-Raphson determines the value ˆβ at which a function L(β) is maximized. Let u = ( L(β)/ β 1, L(β)/ β 2,...) Let H denote the matrix having entries h ab = 2 L(β)/ β a β b, called the Hessian matrix. Let u (t) and H (t) be u and H evaluated at β (t), the guess t for ˆβ. Step t in the iterative process (t = 0,1,2,...) approximates L(β) near β (t) by the terms up to second order in its Taylor series expansion L(β) L(β (t) ) + u (t) (β β (t) ) + ( 1 2 )(β β (t) ) H (t) (β β (t) ) Solving L(β)/ β = u (t) + H (t) (β β (t) ) = 0 for β yields the next guess. That guess can be expressed as β (t+1) = β (t) (H (t) ) 1 u (t) assuing that H (t) is nonsingular. 6 / 15

7 Newton-Raphson method The converegbce of β (t) to ˆβ for the Newton-Raphson method is usually fast. For large t, the convergence satisfies, for each j, for some c > 0 It is referred tp as second-order β (t+1) j ˆβ j c β (t) j ˆβ j 2 This implies that the number of correct decimals in the approximation roughly doubles after sufficiently many iterations. 7 / 15

8 Newton-Raphson method for logistic regression L(π) = ylog(π) + (n y)log(1 π) u = (y nπ)/π(1 π) H = [y/π 2 + (n y)/(1 π) 2 ] π (t+1) = π (t) y + [ (π (t) ) + n y 2 (1 π (t) ) 2 ] 1 ( y nπ(t) π (t) (1 π (t) )) 8 / 15

9 Fisher Scoring Method Fisher scoring us an alternative iterative method for solving likelihood equations It resemles the NR method, the distinction being with the Hessian matrix. Fisher scoring uses the expected value of this matrix, called the expected information, whereas NR uses the matix itself, called observed information. 9 / 15

10 Fisher Scoring Method Let J (t) denote the approximation t for the ML estimate of the expected information matrix; That is, J (t) has elements E( 2 L(β)/ β a β b ), evaluated at β (t). The formula for Fisher scoring is β (t+1) = β (t) + (J (t) ) 1 u (t) 10 / 15

11 Fisher Scoring Method in logsitic regression Information is n/[π(1 π)] A step of Fisher scoring gives π (t+1) = π (t) n y nπ (t) + [ π (t) (1 π (t) ) ] 1 π (t) (1 π (t) ) = π (t) + y nπ(t) n = y n 11 / 15

12 Fisher Scoring Method in logsitic regression J (t) = X W (t) X, where W (t) is W evaluated at β (t) The estimated asymptotic covariance matrix Jˆ 1 of ˆβ occurs as a by-product of this algorithm as (J (t) ) 1 for t at which convergence is adequate. For both Fisher scoring and Newton-Raphson, u has elements u j = L(β) = β j N i=1 (y i µ i )x ij var(y i ) µ i η i 12 / 15

13 ML as Iterative Reweighted Least Squares A relation exists between weighted least squares estimation and using Fisher scoring to find ML estimates. We refer here to the general linear model of form z = Xβ + ε When the covariance matrix of ε is V, the weighted least squares (WLS) estimator of β is (X V 1 X) 1 X V 1 z From J = X WX, expression for elements of u, and since diagonal elements of W are w i = ( µ i / η i ) 2 /Var(Y i ). where z (t) has elements z (t) J (t) β (t) + u (t) = X W (t) z (t) i = j = η (t) i x ij β (t) j + (y i µ (t) i + (y i µ (t) i ) η(t) i µ (t) i ) η(t) i µ (t) i 13 / 15

14 ML as Iterative Reweighted Least Squares Equations for Fisher scoring then have the form (X W (t) X)β (t+1) = X W (t) z (t) These are the normal equations for using weighted least squares to fit a linear model for a response variable z (t), when the model matrix is X and the inverse of the covariance matrix is W (t). The equations have solution β (t+1) = (X W (t) X) 1 X W (t) z (t) 14 / 15

15 ML as Iterative Reweighted Least Squares The vector z in this formulation is a linearized form of the link function g evaluated at y g(y i ) g(µ i ) + (y i µ i )g (µ i ) = η i + (y i µ i )( η i / µ i ) = z i This adjusted response variable z has element i approximated by z (t) i for cycle t of the iterative scheme. That cycle regresses z (t) on X with weight (i.e., inverse covariance) W (t) to obtain a new estimate β (t+1) This estimate yields a new linear predictor value η (t+1) = Xβ (t+1) and a new adjusted respomse value z (t+1) for the next cycle. The ML estimator results from iterative use of weighted least squares, in which the weight matrix changes at each cycle. The process is called iterative reweighted least squares 15 / 15

Outline of GLMs. Definitions

Outline of GLMs. Definitions Outline of GLMs Definitions This is a short outline of GLM details, adapted from the book Nonparametric Regression and Generalized Linear Models, by Green and Silverman. The responses Y i have density

More information

Generalized Linear Models. Kurt Hornik

Generalized Linear Models. Kurt Hornik Generalized Linear Models Kurt Hornik Motivation Assuming normality, the linear model y = Xβ + e has y = β + ε, ε N(0, σ 2 ) such that y N(μ, σ 2 ), E(y ) = μ = β. Various generalizations, including general

More information

Linear Methods for Prediction

Linear Methods for Prediction Chapter 5 Linear Methods for Prediction 5.1 Introduction We now revisit the classification problem and focus on linear methods. Since our prediction Ĝ(x) will always take values in the discrete set G we

More information

Weighted Least Squares I

Weighted Least Squares I Weighted Least Squares I for i = 1, 2,..., n we have, see [1, Bradley], data: Y i x i i.n.i.d f(y i θ i ), where θ i = E(Y i x i ) co-variates: x i = (x i1, x i2,..., x ip ) T let X n p be the matrix of

More information

Cox regression: Estimation

Cox regression: Estimation Cox regression: Estimation Patrick Breheny October 27 Patrick Breheny Survival Data Analysis (BIOS 7210) 1/19 Introduction The Cox Partial Likelihood In our last lecture, we introduced the Cox partial

More information

Sampling distribution of GLM regression coefficients

Sampling distribution of GLM regression coefficients Sampling distribution of GLM regression coefficients Patrick Breheny February 5 Patrick Breheny BST 760: Advanced Regression 1/20 Introduction So far, we ve discussed the basic properties of the score,

More information

Linear model A linear model assumes Y X N(µ(X),σ 2 I), And IE(Y X) = µ(x) = X β, 2/52

Linear model A linear model assumes Y X N(µ(X),σ 2 I), And IE(Y X) = µ(x) = X β, 2/52 Statistics for Applications Chapter 10: Generalized Linear Models (GLMs) 1/52 Linear model A linear model assumes Y X N(µ(X),σ 2 I), And IE(Y X) = µ(x) = X β, 2/52 Components of a linear model The two

More information

Linear Methods for Prediction

Linear Methods for Prediction This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike License. Your use of this material constitutes acceptance of that license and the conditions of use of materials on this

More information

MIT Spring 2016

MIT Spring 2016 Generalized Linear Models MIT 18.655 Dr. Kempthorne Spring 2016 1 Outline Generalized Linear Models 1 Generalized Linear Models 2 Generalized Linear Model Data: (y i, x i ), i = 1,..., n where y i : response

More information

Machine Learning. 7. Logistic and Linear Regression

Machine Learning. 7. Logistic and Linear Regression Sapienza University of Rome, Italy - Machine Learning (27/28) University of Rome La Sapienza Master in Artificial Intelligence and Robotics Machine Learning 7. Logistic and Linear Regression Luca Iocchi,

More information

Linear Regression Models P8111

Linear Regression Models P8111 Linear Regression Models P8111 Lecture 25 Jeff Goldsmith April 26, 2016 1 of 37 Today s Lecture Logistic regression / GLMs Model framework Interpretation Estimation 2 of 37 Linear regression Course started

More information

Linear Classification. CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington

Linear Classification. CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington Linear Classification CSE 6363 Machine Learning Vassilis Athitsos Computer Science and Engineering Department University of Texas at Arlington 1 Example of Linear Classification Red points: patterns belonging

More information

Lecture 16 Solving GLMs via IRWLS

Lecture 16 Solving GLMs via IRWLS Lecture 16 Solving GLMs via IRWLS 09 November 2015 Taylor B. Arnold Yale Statistics STAT 312/612 Notes problem set 5 posted; due next class problem set 6, November 18th Goals for today fixed PCA example

More information

Generalized linear models

Generalized linear models Generalized linear models Søren Højsgaard Department of Mathematical Sciences Aalborg University, Denmark October 29, 202 Contents Densities for generalized linear models. Mean and variance...............................

More information

Statistics 203: Introduction to Regression and Analysis of Variance Course review

Statistics 203: Introduction to Regression and Analysis of Variance Course review Statistics 203: Introduction to Regression and Analysis of Variance Course review Jonathan Taylor - p. 1/?? Today Review / overview of what we learned. - p. 2/?? General themes in regression models Specifying

More information

LINEAR MODELS FOR CLASSIFICATION. J. Elder CSE 6390/PSYC 6225 Computational Modeling of Visual Perception

LINEAR MODELS FOR CLASSIFICATION. J. Elder CSE 6390/PSYC 6225 Computational Modeling of Visual Perception LINEAR MODELS FOR CLASSIFICATION Classification: Problem Statement 2 In regression, we are modeling the relationship between a continuous input variable x and a continuous target variable t. In classification,

More information

Logistic Regression and Generalized Linear Models

Logistic Regression and Generalized Linear Models Logistic Regression and Generalized Linear Models Sridhar Mahadevan mahadeva@cs.umass.edu University of Massachusetts Sridhar Mahadevan: CMPSCI 689 p. 1/2 Topics Generative vs. Discriminative models In

More information

Last updated: Oct 22, 2012 LINEAR CLASSIFIERS. J. Elder CSE 4404/5327 Introduction to Machine Learning and Pattern Recognition

Last updated: Oct 22, 2012 LINEAR CLASSIFIERS. J. Elder CSE 4404/5327 Introduction to Machine Learning and Pattern Recognition Last updated: Oct 22, 2012 LINEAR CLASSIFIERS Problems 2 Please do Problem 8.3 in the textbook. We will discuss this in class. Classification: Problem Statement 3 In regression, we are modeling the relationship

More information

Lecture 5: LDA and Logistic Regression

Lecture 5: LDA and Logistic Regression Lecture 5: and Logistic Regression Hao Helen Zhang Hao Helen Zhang Lecture 5: and Logistic Regression 1 / 39 Outline Linear Classification Methods Two Popular Linear Models for Classification Linear Discriminant

More information

FSAN815/ELEG815: Foundations of Statistical Learning

FSAN815/ELEG815: Foundations of Statistical Learning FSAN815/ELEG815: Foundations of Statistical Learning Gonzalo R. Arce Chapter 14: Logistic Regression Fall 2014 Course Objectives & Structure Course Objectives & Structure The course provides an introduction

More information

Proportional hazards regression

Proportional hazards regression Proportional hazards regression Patrick Breheny October 8 Patrick Breheny Survival Data Analysis (BIOS 7210) 1/28 Introduction The model Solving for the MLE Inference Today we will begin discussing regression

More information

SB1a Applied Statistics Lectures 9-10

SB1a Applied Statistics Lectures 9-10 SB1a Applied Statistics Lectures 9-10 Dr Geoff Nicholls Week 5 MT15 - Natural or canonical) exponential families - Generalised Linear Models for data - Fitting GLM s to data MLE s Iteratively Re-weighted

More information

Multilevel Models in Matrix Form. Lecture 7 July 27, 2011 Advanced Multivariate Statistical Methods ICPSR Summer Session #2

Multilevel Models in Matrix Form. Lecture 7 July 27, 2011 Advanced Multivariate Statistical Methods ICPSR Summer Session #2 Multilevel Models in Matrix Form Lecture 7 July 27, 2011 Advanced Multivariate Statistical Methods ICPSR Summer Session #2 Today s Lecture Linear models from a matrix perspective An example of how to do

More information

1 One-way analysis of variance

1 One-way analysis of variance LIST OF FORMULAS (Version from 21. November 2014) STK2120 1 One-way analysis of variance Assume X ij = µ+α i +ɛ ij ; j = 1, 2,..., J i ; i = 1, 2,..., I ; where ɛ ij -s are independent and N(0, σ 2 ) distributed.

More information

Generalized Linear Models

Generalized Linear Models Generalized Linear Models Lecture 7. Models with binary response II GLM (Spring, 2018) Lecture 7 1 / 13 Existence of estimates Lemma (Claudia Czado, München, 2004) The log-likelihood ln L(β) in logistic

More information

2 Nonlinear least squares algorithms

2 Nonlinear least squares algorithms 1 Introduction Notes for 2017-05-01 We briefly discussed nonlinear least squares problems in a previous lecture, when we described the historical path leading to trust region methods starting from the

More information

Iterative Reweighted Least Squares

Iterative Reweighted Least Squares Iterative Reweighted Least Squares Sargur. University at Buffalo, State University of ew York USA Topics in Linear Classification using Probabilistic Discriminative Models Generative vs Discriminative

More information

Stat 710: Mathematical Statistics Lecture 12

Stat 710: Mathematical Statistics Lecture 12 Stat 710: Mathematical Statistics Lecture 12 Jun Shao Department of Statistics University of Wisconsin Madison, WI 53706, USA Jun Shao (UW-Madison) Stat 710, Lecture 12 Feb 18, 2009 1 / 11 Lecture 12:

More information

Logistic regression. 11 Nov Logistic regression (EPFL) Applied Statistics 11 Nov / 20

Logistic regression. 11 Nov Logistic regression (EPFL) Applied Statistics 11 Nov / 20 Logistic regression 11 Nov 2010 Logistic regression (EPFL) Applied Statistics 11 Nov 2010 1 / 20 Modeling overview Want to capture important features of the relationship between a (set of) variable(s)

More information

Chap 2. Linear Classifiers (FTH, ) Yongdai Kim Seoul National University

Chap 2. Linear Classifiers (FTH, ) Yongdai Kim Seoul National University Chap 2. Linear Classifiers (FTH, 4.1-4.4) Yongdai Kim Seoul National University Linear methods for classification 1. Linear classifiers For simplicity, we only consider two-class classification problems

More information

Now consider the case where E(Y) = µ = Xβ and V (Y) = σ 2 G, where G is diagonal, but unknown.

Now consider the case where E(Y) = µ = Xβ and V (Y) = σ 2 G, where G is diagonal, but unknown. Weighting We have seen that if E(Y) = Xβ and V (Y) = σ 2 G, where G is known, the model can be rewritten as a linear model. This is known as generalized least squares or, if G is diagonal, with trace(g)

More information

STAT 135 Lab 13 (Review) Linear Regression, Multivariate Random Variables, Prediction, Logistic Regression and the δ-method.

STAT 135 Lab 13 (Review) Linear Regression, Multivariate Random Variables, Prediction, Logistic Regression and the δ-method. STAT 135 Lab 13 (Review) Linear Regression, Multivariate Random Variables, Prediction, Logistic Regression and the δ-method. Rebecca Barter May 5, 2015 Linear Regression Review Linear Regression Review

More information

Weighted Least Squares

Weighted Least Squares Weighted Least Squares The standard linear model assumes that Var(ε i ) = σ 2 for i = 1,..., n. As we have seen, however, there are instances where Var(Y X = x i ) = Var(ε i ) = σ2 w i. Here w 1,..., w

More information

Logistic Regression. Seungjin Choi

Logistic Regression. Seungjin Choi Logistic Regression Seungjin Choi Department of Computer Science and Engineering Pohang University of Science and Technology 77 Cheongam-ro, Nam-gu, Pohang 37673, Korea seungjin@postech.ac.kr http://mlg.postech.ac.kr/

More information

Fall 2003: Maximum Likelihood II

Fall 2003: Maximum Likelihood II 36-711 Fall 2003: Maximum Likelihood II Brian Junker November 18, 2003 Slide 1 Newton s Method and Scoring for MLE s Aside on WLS/GLS Application to Exponential Families Application to Generalized Linear

More information

P n. This is called the law of large numbers but it comes in two forms: Strong and Weak.

P n. This is called the law of large numbers but it comes in two forms: Strong and Weak. Large Sample Theory Large Sample Theory is a name given to the search for approximations to the behaviour of statistical procedures which are derived by computing limits as the sample size, n, tends to

More information

Week 7: Binary Outcomes (Scott Long Chapter 3 Part 2)

Week 7: Binary Outcomes (Scott Long Chapter 3 Part 2) Week 7: (Scott Long Chapter 3 Part 2) Tsun-Feng Chiang* *School of Economics, Henan University, Kaifeng, China April 29, 2014 1 / 38 ML Estimation for Probit and Logit ML Estimation for Probit and Logit

More information

Linear Models in Machine Learning

Linear Models in Machine Learning CS540 Intro to AI Linear Models in Machine Learning Lecturer: Xiaojin Zhu jerryzhu@cs.wisc.edu We briefly go over two linear models frequently used in machine learning: linear regression for, well, regression,

More information

SUPPLEMENTARY TEXT: EFFICIENT COMPUTATION WITH A LINEAR MIXED MODEL ON LARGE-SCALE DATA SETS WITH APPLICATIONS TO GENETIC STUDIES

SUPPLEMENTARY TEXT: EFFICIENT COMPUTATION WITH A LINEAR MIXED MODEL ON LARGE-SCALE DATA SETS WITH APPLICATIONS TO GENETIC STUDIES SUPPLEMENTARY TEXT: EFFICIENT COMPUTATION WITH A LINEAR MIXED MODEL ON LARGE-SCALE DATA SETS WITH APPLICATIONS TO GENETIC STUDIES By Matti Pirinen, Peter Donnelly and Chris C.A. Spencer University of Oxford

More information

Lecture 3 September 1

Lecture 3 September 1 STAT 383C: Statistical Modeling I Fall 2016 Lecture 3 September 1 Lecturer: Purnamrita Sarkar Scribe: Giorgio Paulon, Carlos Zanini Disclaimer: These scribe notes have been slightly proofread and may have

More information

Logistic Regression with the Nonnegative Garrote

Logistic Regression with the Nonnegative Garrote Logistic Regression with the Nonnegative Garrote Enes Makalic Daniel F. Schmidt Centre for MEGA Epidemiology The University of Melbourne 24th Australasian Joint Conference on Artificial Intelligence 2011

More information

MS&E 226: Small Data. Lecture 11: Maximum likelihood (v2) Ramesh Johari

MS&E 226: Small Data. Lecture 11: Maximum likelihood (v2) Ramesh Johari MS&E 226: Small Data Lecture 11: Maximum likelihood (v2) Ramesh Johari ramesh.johari@stanford.edu 1 / 18 The likelihood function 2 / 18 Estimating the parameter This lecture develops the methodology behind

More information

REGRESSION WITH SPATIALLY MISALIGNED DATA. Lisa Madsen Oregon State University David Ruppert Cornell University

REGRESSION WITH SPATIALLY MISALIGNED DATA. Lisa Madsen Oregon State University David Ruppert Cornell University REGRESSION ITH SPATIALL MISALIGNED DATA Lisa Madsen Oregon State University David Ruppert Cornell University SPATIALL MISALIGNED DATA 10 X X X X X X X X 5 X X X X X 0 X 0 5 10 OUTLINE 1. Introduction 2.

More information

STA216: Generalized Linear Models. Lecture 1. Review and Introduction

STA216: Generalized Linear Models. Lecture 1. Review and Introduction STA216: Generalized Linear Models Lecture 1. Review and Introduction Let y 1,..., y n denote n independent observations on a response Treat y i as a realization of a random variable Y i In the general

More information

The outline for Unit 3

The outline for Unit 3 The outline for Unit 3 Unit 1. Introduction: The regression model. Unit 2. Estimation principles. Unit 3: Hypothesis testing principles. 3.1 Wald test. 3.2 Lagrange Multiplier. 3.3 Likelihood Ratio Test.

More information

Estimation and Model Selection in Mixed Effects Models Part I. Adeline Samson 1

Estimation and Model Selection in Mixed Effects Models Part I. Adeline Samson 1 Estimation and Model Selection in Mixed Effects Models Part I Adeline Samson 1 1 University Paris Descartes Summer school 2009 - Lipari, Italy These slides are based on Marc Lavielle s slides Outline 1

More information

Lecture 5: Linear models for classification. Logistic regression. Gradient Descent. Second-order methods.

Lecture 5: Linear models for classification. Logistic regression. Gradient Descent. Second-order methods. Lecture 5: Linear models for classification. Logistic regression. Gradient Descent. Second-order methods. Linear models for classification Logistic regression Gradient descent and second-order methods

More information

Generalized Linear Models

Generalized Linear Models Generalized Linear Models Advanced Methods for Data Analysis (36-402/36-608 Spring 2014 1 Generalized linear models 1.1 Introduction: two regressions So far we ve seen two canonical settings for regression.

More information

Asymptotic standard errors of MLE

Asymptotic standard errors of MLE Asymptotic standard errors of MLE Suppose, in the previous example of Carbon and Nitrogen in soil data, that we get the parameter estimates For maximum likelihood estimation, we can use Hessian matrix

More information

Ch. 5 Transformations and Weighting

Ch. 5 Transformations and Weighting Outline Three approaches: Ch. 5 Transformations and Weighting. Variance stabilizing transformations; Box-Cox Transformations - Section 5.2; 5.4 2. Transformations to linearize the model - Section 5.3 3.

More information

(θ θ ), θ θ = 2 L(θ ) θ θ θ θ θ (θ )= H θθ (θ ) 1 d θ (θ )

(θ θ ), θ θ = 2 L(θ ) θ θ θ θ θ (θ )= H θθ (θ ) 1 d θ (θ ) Setting RHS to be zero, 0= (θ )+ 2 L(θ ) (θ θ ), θ θ = 2 L(θ ) 1 (θ )= H θθ (θ ) 1 d θ (θ ) O =0 θ 1 θ 3 θ 2 θ Figure 1: The Newton-Raphson Algorithm where H is the Hessian matrix, d θ is the derivative

More information

Newton s Method. Javier Peña Convex Optimization /36-725

Newton s Method. Javier Peña Convex Optimization /36-725 Newton s Method Javier Peña Convex Optimization 10-725/36-725 1 Last time: dual correspondences Given a function f : R n R, we define its conjugate f : R n R, f ( (y) = max y T x f(x) ) x Properties and

More information

STAT5044: Regression and Anova

STAT5044: Regression and Anova STAT5044: Regression and Anova Inyoung Kim 1 / 18 Outline 1 Logistic regression for Binary data 2 Poisson regression for Count data 2 / 18 GLM Let Y denote a binary response variable. Each observation

More information

STA 450/4000 S: January

STA 450/4000 S: January STA 450/4000 S: January 6 005 Notes Friday tutorial on R programming reminder office hours on - F; -4 R The book Modern Applied Statistics with S by Venables and Ripley is very useful. Make sure you have

More information

if n is large, Z i are weakly dependent 0-1-variables, p i = P(Z i = 1) small, and Then n approx i=1 i=1 n i=1

if n is large, Z i are weakly dependent 0-1-variables, p i = P(Z i = 1) small, and Then n approx i=1 i=1 n i=1 Count models A classical, theoretical argument for the Poisson distribution is the approximation Binom(n, p) Pois(λ) for large n and small p and λ = np. This can be extended considerably to n approx Z

More information

Newton s Method. Ryan Tibshirani Convex Optimization /36-725

Newton s Method. Ryan Tibshirani Convex Optimization /36-725 Newton s Method Ryan Tibshirani Convex Optimization 10-725/36-725 1 Last time: dual correspondences Given a function f : R n R, we define its conjugate f : R n R, Properties and examples: f (y) = max x

More information

A Blockwise Descent Algorithm for Group-penalized Multiresponse and Multinomial Regression

A Blockwise Descent Algorithm for Group-penalized Multiresponse and Multinomial Regression A Blockwise Descent Algorithm for Group-penalized Multiresponse and Multinomial Regression Noah Simon Jerome Friedman Trevor Hastie November 5, 013 Abstract In this paper we purpose a blockwise descent

More information

Stat 579: Generalized Linear Models and Extensions

Stat 579: Generalized Linear Models and Extensions Stat 579: Generalized Linear Models and Extensions Linear Mixed Models for Longitudinal Data Yan Lu April, 2018, week 15 1 / 38 Data structure t1 t2 tn i 1st subject y 11 y 12 y 1n1 Experimental 2nd subject

More information

Generalized Linear Models

Generalized Linear Models Generalized Linear Models Lecture 3. Hypothesis testing. Goodness of Fit. Model diagnostics GLM (Spring, 2018) Lecture 3 1 / 34 Models Let M(X r ) be a model with design matrix X r (with r columns) r n

More information

STAT5044: Regression and Anova. Inyoung Kim

STAT5044: Regression and Anova. Inyoung Kim STAT5044: Regression and Anova Inyoung Kim 2 / 51 Outline 1 Matrix Expression 2 Linear and quadratic forms 3 Properties of quadratic form 4 Properties of estimates 5 Distributional properties 3 / 51 Matrix

More information

APPLICATION OF NEWTON RAPHSON METHOD TO NON LINEAR MODELS

APPLICATION OF NEWTON RAPHSON METHOD TO NON LINEAR MODELS APPLICATION OF NEWTON RAPHSON METHOD TO NON LINEAR MODELS Bakari H.R, Adegoke T.M, and Yahya A.M Department of Mathematics and Statistics, University of Maiduguri, Nigeria ABSTRACT: Maximum likelihood

More information

Classification. Chapter Introduction. 6.2 The Bayes classifier

Classification. Chapter Introduction. 6.2 The Bayes classifier Chapter 6 Classification 6.1 Introduction Often encountered in applications is the situation where the response variable Y takes values in a finite set of labels. For example, the response Y could encode

More information

Likelihood-Based Methods

Likelihood-Based Methods Likelihood-Based Methods Handbook of Spatial Statistics, Chapter 4 Susheela Singh September 22, 2016 OVERVIEW INTRODUCTION MAXIMUM LIKELIHOOD ESTIMATION (ML) RESTRICTED MAXIMUM LIKELIHOOD ESTIMATION (REML)

More information

Some explanations about the IWLS algorithm to fit generalized linear models

Some explanations about the IWLS algorithm to fit generalized linear models Some explanations about the IWLS algorithm to fit generalized linear models Christophe Dutang To cite this version: Christophe Dutang. Some explanations about the IWLS algorithm to fit generalized linear

More information

POLI 8501 Introduction to Maximum Likelihood Estimation

POLI 8501 Introduction to Maximum Likelihood Estimation POLI 8501 Introduction to Maximum Likelihood Estimation Maximum Likelihood Intuition Consider a model that looks like this: Y i N(µ, σ 2 ) So: E(Y ) = µ V ar(y ) = σ 2 Suppose you have some data on Y,

More information

Approximation of the Fisher information and design in nonlinear mixed effects models

Approximation of the Fisher information and design in nonlinear mixed effects models of the Fisher information and design in nonlinear mixed effects models Tobias Mielke Optimum for Mixed Effects Non-Linear and Generalized Linear PODE - 2011 Outline 1 2 3 Mixed Effects Similar functions

More information

1. Variance stabilizing transformations; Box-Cox Transformations - Section. 2. Transformations to linearize the model - Section 5.

1. Variance stabilizing transformations; Box-Cox Transformations - Section. 2. Transformations to linearize the model - Section 5. Ch. 5: Transformations and Weighting 1. Variance stabilizing transformations; Box-Cox Transformations - Section 5.2; 5.4 2. Transformations to linearize the model - Section 5.3 3. Weighted regression -

More information

Optimization. The value x is called a maximizer of f and is written argmax X f. g(λx + (1 λ)y) < λg(x) + (1 λ)g(y) 0 < λ < 1; x, y X.

Optimization. The value x is called a maximizer of f and is written argmax X f. g(λx + (1 λ)y) < λg(x) + (1 λ)g(y) 0 < λ < 1; x, y X. Optimization Background: Problem: given a function f(x) defined on X, find x such that f(x ) f(x) for all x X. The value x is called a maximizer of f and is written argmax X f. In general, argmax X f may

More information

Linear and logistic regression

Linear and logistic regression Linear and logistic regression Guillaume Obozinski Ecole des Ponts - ParisTech Master MVA Linear and logistic regression 1/22 Outline 1 Linear regression 2 Logistic regression 3 Fisher discriminant analysis

More information

Classification. Classification is similar to regression in that the goal is to use covariates to predict on outcome.

Classification. Classification is similar to regression in that the goal is to use covariates to predict on outcome. Classification Classification is similar to regression in that the goal is to use covariates to predict on outcome. We still have a vector of covariates X. However, the response is binary (or a few classes),

More information

Linear Regression With Special Variables

Linear Regression With Special Variables Linear Regression With Special Variables Junhui Qian December 21, 2014 Outline Standardized Scores Quadratic Terms Interaction Terms Binary Explanatory Variables Binary Choice Models Standardized Scores:

More information

Open Problems in Mixed Models

Open Problems in Mixed Models xxiii Determining how to deal with a not positive definite covariance matrix of random effects, D during maximum likelihood estimation algorithms. Several strategies are discussed in Section 2.15. For

More information

Spatial statistics, addition to Part I. Parameter estimation and kriging for Gaussian random fields

Spatial statistics, addition to Part I. Parameter estimation and kriging for Gaussian random fields Spatial statistics, addition to Part I. Parameter estimation and kriging for Gaussian random fields 1 Introduction Jo Eidsvik Department of Mathematical Sciences, NTNU, Norway. (joeid@math.ntnu.no) February

More information

Lecture 7. Logistic Regression. Luigi Freda. ALCOR Lab DIAG University of Rome La Sapienza. December 11, 2016

Lecture 7. Logistic Regression. Luigi Freda. ALCOR Lab DIAG University of Rome La Sapienza. December 11, 2016 Lecture 7 Logistic Regression Luigi Freda ALCOR Lab DIAG University of Rome La Sapienza December 11, 2016 Luigi Freda ( La Sapienza University) Lecture 7 December 11, 2016 1 / 39 Outline 1 Intro Logistic

More information

For iid Y i the stronger conclusion holds; for our heuristics ignore differences between these notions.

For iid Y i the stronger conclusion holds; for our heuristics ignore differences between these notions. Large Sample Theory Study approximate behaviour of ˆθ by studying the function U. Notice U is sum of independent random variables. Theorem: If Y 1, Y 2,... are iid with mean µ then Yi n µ Called law of

More information

Simple Regression Model Setup Estimation Inference Prediction. Model Diagnostic. Multiple Regression. Model Setup and Estimation.

Simple Regression Model Setup Estimation Inference Prediction. Model Diagnostic. Multiple Regression. Model Setup and Estimation. Statistical Computation Math 475 Jimin Ding Department of Mathematics Washington University in St. Louis www.math.wustl.edu/ jmding/math475/index.html October 10, 2013 Ridge Part IV October 10, 2013 1

More information

Modeling of salmonella-prevalence in the case of chicken

Modeling of salmonella-prevalence in the case of chicken Modeling of salmonella-prevalence in the case of chicken Alena Myšičková Wolfgang Härdle Institute for Statistics and Econometrics Humboldt-University at Berlin Outline Introduction Data and Materials

More information

Generalized Linear Models I

Generalized Linear Models I Statistics 203: Introduction to Regression and Analysis of Variance Generalized Linear Models I Jonathan Taylor - p. 1/16 Today s class Poisson regression. Residuals for diagnostics. Exponential families.

More information

A. Motivation To motivate the analysis of variance framework, we consider the following example.

A. Motivation To motivate the analysis of variance framework, we consider the following example. 9.07 ntroduction to Statistics for Brain and Cognitive Sciences Emery N. Brown Lecture 14: Analysis of Variance. Objectives Understand analysis of variance as a special case of the linear model. Understand

More information

Likelihoods for Generalized Linear Models

Likelihoods for Generalized Linear Models 1 Likelihoods for Generalized Linear Models 1.1 Some General Theory We assume that Y i has the p.d.f. that is a member of the exponential family. That is, f(y i ; θ i, φ) = exp{(y i θ i b(θ i ))/a i (φ)

More information

Advanced Quantitative Methods: maximum likelihood

Advanced Quantitative Methods: maximum likelihood Advanced Quantitative Methods: Maximum Likelihood University College Dublin 4 March 2014 1 2 3 4 5 6 Outline 1 2 3 4 5 6 of straight lines y = 1 2 x + 2 dy dx = 1 2 of curves y = x 2 4x + 5 of curves y

More information

Vasil Khalidov & Miles Hansard. C.M. Bishop s PRML: Chapter 5; Neural Networks

Vasil Khalidov & Miles Hansard. C.M. Bishop s PRML: Chapter 5; Neural Networks C.M. Bishop s PRML: Chapter 5; Neural Networks Introduction The aim is, as before, to find useful decompositions of the target variable; t(x) = y(x, w) + ɛ(x) (3.7) t(x n ) and x n are the observations,

More information

Ph.D. Qualifying Exam Friday Saturday, January 3 4, 2014

Ph.D. Qualifying Exam Friday Saturday, January 3 4, 2014 Ph.D. Qualifying Exam Friday Saturday, January 3 4, 2014 Put your solution to each problem on a separate sheet of paper. Problem 1. (5166) Assume that two random samples {x i } and {y i } are independently

More information

ST3241 Categorical Data Analysis I Generalized Linear Models. Introduction and Some Examples

ST3241 Categorical Data Analysis I Generalized Linear Models. Introduction and Some Examples ST3241 Categorical Data Analysis I Generalized Linear Models Introduction and Some Examples 1 Introduction We have discussed methods for analyzing associations in two-way and three-way tables. Now we will

More information

Lecture 4: Types of errors. Bayesian regression models. Logistic regression

Lecture 4: Types of errors. Bayesian regression models. Logistic regression Lecture 4: Types of errors. Bayesian regression models. Logistic regression A Bayesian interpretation of regularization Bayesian vs maximum likelihood fitting more generally COMP-652 and ECSE-68, Lecture

More information

Estimation: Problems & Solutions

Estimation: Problems & Solutions Estimation: Problems & Solutions Edps/Psych/Stat 587 Carolyn J. Anderson Department of Educational Psychology c Board of Trustees, University of Illinois Fall 2017 Outline 1. Introduction: Estimation of

More information

Regression with Numerical Optimization. Logistic

Regression with Numerical Optimization. Logistic CSG220 Machine Learning Fall 2008 Regression with Numerical Optimization. Logistic regression Regression with Numerical Optimization. Logistic regression based on a document by Andrew Ng October 3, 204

More information

STAT5044: Regression and Anova

STAT5044: Regression and Anova STAT5044: Regression and Anova Inyoung Kim 1 / 25 Outline 1 Multiple Linear Regression 2 / 25 Basic Idea An extra sum of squares: the marginal reduction in the error sum of squares when one or several

More information

STAT763: Applied Regression Analysis. Multiple linear regression. 4.4 Hypothesis testing

STAT763: Applied Regression Analysis. Multiple linear regression. 4.4 Hypothesis testing STAT763: Applied Regression Analysis Multiple linear regression 4.4 Hypothesis testing Chunsheng Ma E-mail: cma@math.wichita.edu 4.4.1 Significance of regression Null hypothesis (Test whether all β j =

More information

STAT5044: Regression and Anova. Inyoung Kim

STAT5044: Regression and Anova. Inyoung Kim STAT5044: Regression and Anova Inyoung Kim 2 / 47 Outline 1 Regression 2 Simple Linear regression 3 Basic concepts in regression 4 How to estimate unknown parameters 5 Properties of Least Squares Estimators:

More information

Estimation: Problems & Solutions

Estimation: Problems & Solutions Estimation: Problems & Solutions Edps/Psych/Soc 587 Carolyn J. Anderson Department of Educational Psychology c Board of Trustees, University of Illinois Spring 2019 Outline 1. Introduction: Estimation

More information

Econ 583 Final Exam Fall 2008

Econ 583 Final Exam Fall 2008 Econ 583 Final Exam Fall 2008 Eric Zivot December 11, 2008 Exam is due at 9:00 am in my office on Friday, December 12. 1 Maximum Likelihood Estimation and Asymptotic Theory Let X 1,...,X n be iid random

More information

Machine Learning Lecture 7

Machine Learning Lecture 7 Course Outline Machine Learning Lecture 7 Fundamentals (2 weeks) Bayes Decision Theory Probability Density Estimation Statistical Learning Theory 23.05.2016 Discriminative Approaches (5 weeks) Linear Discriminant

More information

Nonresponse weighting adjustment using estimated response probability

Nonresponse weighting adjustment using estimated response probability Nonresponse weighting adjustment using estimated response probability Jae-kwang Kim Yonsei University, Seoul, Korea December 26, 2006 Introduction Nonresponse Unit nonresponse Item nonresponse Basic strategy

More information

Chapter 4: Generalized Linear Models-II

Chapter 4: Generalized Linear Models-II : Generalized Linear Models-II Dipankar Bandyopadhyay Department of Biostatistics, Virginia Commonwealth University BIOS 625: Categorical Data & GLM [Acknowledgements to Tim Hanson and Haitao Chu] D. Bandyopadhyay

More information

Generalized Linear Models 1

Generalized Linear Models 1 Generalized Linear Models 1 STA 2101/442: Fall 2012 1 See last slide for copyright information. 1 / 24 Suggested Reading: Davison s Statistical models Exponential families of distributions Sec. 5.2 Chapter

More information

The equivalence of the Maximum Likelihood and a modified Least Squares for a case of Generalized Linear Model

The equivalence of the Maximum Likelihood and a modified Least Squares for a case of Generalized Linear Model Applied and Computational Mathematics 2014; 3(5): 268-272 Published online November 10, 2014 (http://www.sciencepublishinggroup.com/j/acm) doi: 10.11648/j.acm.20140305.22 ISSN: 2328-5605 (Print); ISSN:

More information

where F ( ) is the gamma function, y > 0, µ > 0, σ 2 > 0. (a) show that Y has an exponential family distribution of the form

where F ( ) is the gamma function, y > 0, µ > 0, σ 2 > 0. (a) show that Y has an exponential family distribution of the form Stat 579: General Instruction of Homework: All solutions should be rigorously explained. For problems using SAS or R, please attach code as part of your homework Assignment 1: Due Jan 30 Tuesday in class

More information

STA 216: GENERALIZED LINEAR MODELS. Lecture 1. Review and Introduction. Much of statistics is based on the assumption that random

STA 216: GENERALIZED LINEAR MODELS. Lecture 1. Review and Introduction. Much of statistics is based on the assumption that random STA 216: GENERALIZED LINEAR MODELS Lecture 1. Review and Introduction Much of statistics is based on the assumption that random variables are continuous & normally distributed. Normal linear regression

More information

Chapter 4: Constrained estimators and tests in the multiple linear regression model (Part III)

Chapter 4: Constrained estimators and tests in the multiple linear regression model (Part III) Chapter 4: Constrained estimators and tests in the multiple linear regression model (Part III) Florian Pelgrin HEC September-December 2010 Florian Pelgrin (HEC) Constrained estimators September-December

More information