Fast Dimension-Reduced Climate Model Calibration and the Effect of Data Aggregation
|
|
- Crystal Smith
- 5 years ago
- Views:
Transcription
1 Fast Dimension-Reduced Climate Model Calibration and the Effect of Data Aggregation Won Chang Post Doctoral Scholar, Department of Statistics, University of Chicago Oct 15, 2014 Thesis Advisors: Murali Haran, Klaus Keller Coauthors: Murali Haran, Klaus Keller (Penn State), Roman Olson (U of New South Wales) Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
2 Overview Climate models are often used to make projections about future climate. A major source of uncertainty about these projections is due to uncertainty about climate model input parameters. We propose methods for learning about climate model parameters from climate model outputs and observations. Challenges: Data in the form of high-dimensional spatial fields. Complicated error structures. I will describe novel computationally efficient calibration approach. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
3 Scientific Motivation Scientific Goal: Making projections for AMOC using climate model. Atlantic Meridional Overturning Circulation (AMOC): Large scale ocean circulation, important for equilibrium climate in Europe Rahmstorf (1997) Background vertical diffusivity (K bg ): Model parameter that quantifies intensity of vertical mixing in ocean. Source of uncertainty in AMOC projections. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
4 Parametric Uncertainty in AMOC Projections Bhat et al. (2012) Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
5 Calibration Problem Which parameter settings best match observations? Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
6 Emulation Step Computer model output (y-axis) vs. input (x-axis) Emulation (approximation) of computer model using GP Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
7 Calibration Step Combining observation and emulator Posterior PDF of θ given model output and observations Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
8 Summary of Statistical Problem Goal: Learning about θ based on two sources of information: Observations*: Mean potential ocean temperature, Z = (Z(s 1 ),..., Z(s n )) T, where s 1,..., s n are 3D locations. Climate model output** for mean potential temperature Y(θ 1 ),..., Y(θ p ), where each Y(θ i ) = (Y (s 1, θ i ),..., Y (s n, θ i )) T is spatial field (Sriver et al., 2012). Z and Y(θ i ) s are n-dimensional vectors Important: output at each θ i is a high-dimensional spatial field. n = 61, 051 locations, p = 250 runs. *World Ocean Atlas 2009 **University of Victoria (UVic) Earth System Climate Model Averaged over Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
9 GP for Computer Model Emulation Fit GP to np-dimensional data Y = ( Y(θ 1 ) T,..., Y(θ p ) T ) T by finding MLE ˆξ of emulator parameter ξ. Covariance used for non-linear relationship between parameter and model output (model output as a function of parameter) non-linear spatial surface (model output as a function of location) Covariance function example: Cov ( Y (s, θ), Y (s, θ ); ξ ) ( =κ exp g (s, ) ( s ) θ θ ) exp φ s φ θ + ζi (θ = θ )I (s = s ) where g is geodesic distance, and ξ = (κ, φ s, φ θ, ζ) is covariance parameter. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
10 Step 1: Emulation (Approximating Computer Model) Get η(θ NEW, Y) for prediction at any θ NEW Θ: GP gives ( Y Y(θ NEW ) ) N ( ( 0 0 ), n(p+1) 1 ( ) Σ11 Σ 12 Σ 21 Σ 22 n(p+1) n(p+1) Emulator: η (θ NEW, Y) = Y(θ NEW ) Y N ( Σ 21 Σ 1 11 Y, Σ 22 Σ 21 Σ 1 11 Σ ) 12 ) Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
11 Calibration Model based on GP Emulator Model observational data by Z = η(θ, Y) + δ, where n-dimensional spatial field δ is model-observation discrepancy with covariance parameter ξ δ. Corresponding probability model: Z Y, θ, ξ δ N ( µ η, Σ η + Σ d ) where µ η = Σ 12 Σ 1 22 Y and Σ η = Σ 22 Σ 21 Σ 1 11 Σ 12. Σ d is covariance matrix for discrepancy process such that ( {Σ d } ij = κ d exp g(s ) i, s j ) + ζ d I (s i = s j ), φ d where κ d > 0, φ d > 0, ζ d > 0, and ξ δ = (κ d, φ d, ζ d ). Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
12 Step 2: Calibration (Inferring Input Parameter) Inference for θ based on posterior distribution π(θ, ξ δ Z, Y, ˆξ) L(Z Y, θ, ξ δ, ˆξ) p(θ) p(ξ }{{} δ ) }{{} likelihood priors for θ and ξ δ with emulator parameter ˆξ fixed at value estimated in emulation step. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
13 Computational Challenges Emulation Step: Computational Challenges for np np covariance matrix: Cholesky decomposition costs 1 3 n3 p 3 = flops. Storing covariance matrix requires = 1, 735, 624 Gb 3 memory space. Calibration Step: Similar challenges for dealing with n n covariance matrix. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
14 Our Solution: Dimension Reduction Fast computation using PC and Kernel Convolution (Chang et al. 2014a, the Annals of Applied Statistics) Consider model outputs at θ 1,..., θ p as replicates and obtain PCs Y (s 1, θ 1 )... Y (s n, θ 1 )..... Y (s 1, θ p )... Y (s n, θ p ) p n Y1 R(θ 1)... Y R J y (θ 1 )..... Y1 R(θ p)... YJ R y (θ p ) p J y PCs pick up characteristics of model output that vary most across input parameters θ 1,..., θ p. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
15 Emulation Using PCs Fit 1-dimensional GP for each series Yj R (θ 1 ),..., Yj R (θ p ) η(θ, Y R ): J y -dimensional emulation process for PCs, Y R is collection of PCs Computation reduces from O(n 3 p 3 ) to O(J y p 3 ) ( to flops). Emulation for original output: compute K y η(θ, Y R ) where K y is matrix of scaled eigenvectors Covariance Structure Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
16 Cross-validation for Emulator Check emulation performance: Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
17 Calibration in Reduced Dimensions Probability model for dimension-reduced observation Z R : Z = K y η(θ, Y R ) + }{{} K d ν }{{} emulator discrepancy + ɛ }{{} ( Z R = (K T K) 1 K T η(θ, Y Z = R ) ν observation error, ) + (K T K) 1 K T ɛ, with combined basis K = [K y K d ], knot process ν N(0, κ d I), and observational error ɛ N(0, σ 2 I). Infer θ through posterior distribution π(θ, κ d, σ 2 Z R, Y R ) L(Z R Y R, θ, κ d, σ 2 ) p(θ)p(κ }{{} d )p(σ 2 ) }{{} likelihood given by above priors Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
18 Modeling Discrepancy with Kernel Convolution Kernel convolution: Specifying n-dimensional discrepancy process δ using J d -dimensional knot process ν (J d < n) and n J d kernel basis matrix K d. Let δ = K d ν. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
19 Scientific Question: Effect of Data Aggregation Data aggregation is commonly used to avoid computational challenges Its effect is previously unknown due to computational challenges for unaggregated data Our approach allows us to calibrate using unaggregated data. We compare results based on 1D (depth profile, n=13) 2D (zonal average, n=984) 3D (unaggregated, n=61051) Inference using 3D data: shaper inference for input parameter θ more robust to changes in prior specifications for discrepancy parameters. Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
20 Projection Results Using unaggregated spatial patterns (3D) leads to sharper projections Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
21 Discussion Dimension reduction-based approach: Very fast, scales well with n, number of spatial locations Very easy to use: Automatic emulation step Scientific finding: Using full spatial pattern without data aggregation leads to better results Other application: Greenland ice sheet model calibration (Chang 2014b) Ongoing Work: Calibration using binary spatial data: First extension to non-gaussian data Easily extended to one parametric exponential family Possible application: Ice sheet model calibration, ecological model, infectious disease model Won Chang (U of Chicago) Climate Model Calibration Oct 15, / 21
The Pennsylvania State University The Graduate School CLIMATE MODEL CALIBRATION USING HIGH-DIMENSIONAL AND NON-GAUSSIAN SPATIAL DATA
The Pennsylvania State University The Graduate School CLIMATE MODEL CALIBRATION USING HIGH-DIMENSIONAL AND NON-GAUSSIAN SPATIAL DATA A Dissertation in Statistics by Won Chang c 2014 Won Chang Submitted
More information1. Gaussian process emulator for principal components
Supplement of Geosci. Model Dev., 7, 1933 1943, 2014 http://www.geosci-model-dev.net/7/1933/2014/ doi:10.5194/gmd-7-1933-2014-supplement Author(s) 2014. CC Attribution 3.0 License. Supplement of Probabilistic
More informationInferring Likelihoods and Climate System Characteristics from Climate Models and Multiple Tracers
Inferring Likelihoods and Climate System Characteristics from Climate Models and Multiple Tracers K. Sham Bhat, Murali Haran, Roman Tonkonojenkov, and Klaus Keller Abstract Characterizing the risks of
More informationGaussian Processes and Complex Computer Models
Gaussian Processes and Complex Computer Models Astroinformatics Summer School, Penn State University June 2018 Murali Haran Department of Statistics, Penn State University Murali Haran, Penn State 1 Modeling
More information1. Fisher Information
1. Fisher Information Let f(x θ) be a density function with the property that log f(x θ) is differentiable in θ throughout the open p-dimensional parameter set Θ R p ; then the score statistic (or score
More informationTutorial on Approximate Bayesian Computation
Tutorial on Approximate Bayesian Computation Michael Gutmann https://sites.google.com/site/michaelgutmann University of Helsinki Aalto University Helsinki Institute for Information Technology 16 May 2016
More informationTutorial on Gaussian Processes and the Gaussian Process Latent Variable Model
Tutorial on Gaussian Processes and the Gaussian Process Latent Variable Model (& discussion on the GPLVM tech. report by Prof. N. Lawrence, 06) Andreas Damianou Department of Neuro- and Computer Science,
More informationApproximate Bayesian Computation
Approximate Bayesian Computation Michael Gutmann https://sites.google.com/site/michaelgutmann University of Helsinki and Aalto University 1st December 2015 Content Two parts: 1. The basics of approximate
More informationStatistics & Data Sciences: First Year Prelim Exam May 2018
Statistics & Data Sciences: First Year Prelim Exam May 2018 Instructions: 1. Do not turn this page until instructed to do so. 2. Start each new question on a new sheet of paper. 3. This is a closed book
More informationBayesian Inference by Density Ratio Estimation
Bayesian Inference by Density Ratio Estimation Michael Gutmann https://sites.google.com/site/michaelgutmann Institute for Adaptive and Neural Computation School of Informatics, University of Edinburgh
More informationProbabilistic Reasoning in Deep Learning
Probabilistic Reasoning in Deep Learning Dr Konstantina Palla, PhD palla@stats.ox.ac.uk September 2017 Deep Learning Indaba, Johannesburgh Konstantina Palla 1 / 39 OVERVIEW OF THE TALK Basics of Bayesian
More informationEfficient Likelihood-Free Inference
Efficient Likelihood-Free Inference Michael Gutmann http://homepages.inf.ed.ac.uk/mgutmann Institute for Adaptive and Neural Computation School of Informatics, University of Edinburgh 8th November 2017
More informationBy K. Sham Bhat, Murali Haran, Roman Tonkonojenkov and Klaus Keller. The Pennsylvania State University
Submitted to the Annals of Applied Statistics INFERRING LIKELIHOODS AND CLIMATE SYSTEM CHARACTERISTICS FROM CLIMATE MODELS AND MULTIPLE TRACERS By K. Sham Bhat, Murali Haran, Roman Tonkonojenkov and Klaus
More informationGraphical Models for Collaborative Filtering
Graphical Models for Collaborative Filtering Le Song Machine Learning II: Advanced Topics CSE 8803ML, Spring 2012 Sequence modeling HMM, Kalman Filter, etc.: Similarity: the same graphical model topology,
More informationPatterns of Scalable Bayesian Inference Background (Session 1)
Patterns of Scalable Bayesian Inference Background (Session 1) Jerónimo Arenas-García Universidad Carlos III de Madrid jeronimo.arenas@gmail.com June 14, 2017 1 / 15 Motivation. Bayesian Learning principles
More informationGaussian Processes (10/16/13)
STA561: Probabilistic machine learning Gaussian Processes (10/16/13) Lecturer: Barbara Engelhardt Scribes: Changwei Hu, Di Jin, Mengdi Wang 1 Introduction In supervised learning, we observe some inputs
More informationThe geometry of Gaussian processes and Bayesian optimization. Contal CMLA, ENS Cachan
The geometry of Gaussian processes and Bayesian optimization. Contal CMLA, ENS Cachan Background: Global Optimization and Gaussian Processes The Geometry of Gaussian Processes and the Chaining Trick Algorithm
More informationSTAT 518 Intro Student Presentation
STAT 518 Intro Student Presentation Wen Wei Loh April 11, 2013 Title of paper Radford M. Neal [1999] Bayesian Statistics, 6: 475-501, 1999 What the paper is about Regression and Classification Flexible
More informationProbabilistic classification CE-717: Machine Learning Sharif University of Technology. M. Soleymani Fall 2016
Probabilistic classification CE-717: Machine Learning Sharif University of Technology M. Soleymani Fall 2016 Topics Probabilistic approach Bayes decision theory Generative models Gaussian Bayes classifier
More informationFast Likelihood-Free Inference via Bayesian Optimization
Fast Likelihood-Free Inference via Bayesian Optimization Michael Gutmann https://sites.google.com/site/michaelgutmann University of Helsinki Aalto University Helsinki Institute for Information Technology
More informationSTATS 200: Introduction to Statistical Inference. Lecture 29: Course review
STATS 200: Introduction to Statistical Inference Lecture 29: Course review Course review We started in Lecture 1 with a fundamental assumption: Data is a realization of a random process. The goal throughout
More informationStatistics and the Future of the Antarctic Ice Sheet
Statistics and the Future of the Antarctic Ice Sheet by Murali Haran, Won Chang, Klaus Keller, Robert Nicholas and David Pollard Introduction One of the enduring symbols of the impact of climate change
More informationGaussian Process Optimization with Mutual Information
Gaussian Process Optimization with Mutual Information Emile Contal 1 Vianney Perchet 2 Nicolas Vayatis 1 1 CMLA Ecole Normale Suprieure de Cachan & CNRS, France 2 LPMA Université Paris Diderot & CNRS,
More informationParametric Models. Dr. Shuang LIANG. School of Software Engineering TongJi University Fall, 2012
Parametric Models Dr. Shuang LIANG School of Software Engineering TongJi University Fall, 2012 Today s Topics Maximum Likelihood Estimation Bayesian Density Estimation Today s Topics Maximum Likelihood
More informationGaussian Processes. Le Song. Machine Learning II: Advanced Topics CSE 8803ML, Spring 2012
Gaussian Processes Le Song Machine Learning II: Advanced Topics CSE 8803ML, Spring 01 Pictorial view of embedding distribution Transform the entire distribution to expected features Feature space Feature
More informationPattern Recognition and Machine Learning. Bishop Chapter 2: Probability Distributions
Pattern Recognition and Machine Learning Chapter 2: Probability Distributions Cécile Amblard Alex Kläser Jakob Verbeek October 11, 27 Probability Distributions: General Density Estimation: given a finite
More informationPackage stilt. R topics documented: November 2, Type Package
Type Package Package stilt November 2, 2017 Title Separable Gaussian Process Interpolation (Emulation) Version 1.2.0 Date 2017-11-02 Author Roman Olson, Won Chang, Klaus Keller, and Murali Haran Maintainer
More informationThe Pennsylvania State University The Graduate School INFERENCE FOR COMPLEX COMPUTER MODELS AND LARGE
The Pennsylvania State University The Graduate School INFERENCE FOR COMPLEX COMPUTER MODELS AND LARGE MULTIVARIATE SPATIAL DATA WITH APPLICATIONS TO CLIMATE SCIENCE A Dissertation in Statistics by Kabekode
More informationGAUSSIAN PROCESS REGRESSION
GAUSSIAN PROCESS REGRESSION CSE 515T Spring 2015 1. BACKGROUND The kernel trick again... The Kernel Trick Consider again the linear regression model: y(x) = φ(x) w + ε, with prior p(w) = N (w; 0, Σ). The
More informationBayesian Analysis of Risk for Data Mining Based on Empirical Likelihood
1 / 29 Bayesian Analysis of Risk for Data Mining Based on Empirical Likelihood Yuan Liao Wenxin Jiang Northwestern University Presented at: Department of Statistics and Biostatistics Rutgers University
More informationGaussian Processes for Computer Experiments
Gaussian Processes for Computer Experiments Jeremy Oakley School of Mathematics and Statistics, University of Sheffield www.jeremy-oakley.staff.shef.ac.uk 1 / 43 Computer models Computer model represented
More informationNonparameteric Regression:
Nonparameteric Regression: Nadaraya-Watson Kernel Regression & Gaussian Process Regression Seungjin Choi Department of Computer Science and Engineering Pohang University of Science and Technology 77 Cheongam-ro,
More informationPractical Bayesian Optimization of Machine Learning. Learning Algorithms
Practical Bayesian Optimization of Machine Learning Algorithms CS 294 University of California, Berkeley Tuesday, April 20, 2016 Motivation Machine Learning Algorithms (MLA s) have hyperparameters that
More informationBayesian model selection for computer model validation via mixture model estimation
Bayesian model selection for computer model validation via mixture model estimation Kaniav Kamary ATER, CNAM Joint work with É. Parent, P. Barbillon, M. Keller and N. Bousquet Outline Computer model validation
More informationChapter 2: Fundamentals of Statistics Lecture 15: Models and statistics
Chapter 2: Fundamentals of Statistics Lecture 15: Models and statistics Data from one or a series of random experiments are collected. Planning experiments and collecting data (not discussed here). Analysis:
More informationThe Social Cost of Stochastic & Irreversible Climate Change
The Social Cost of Stochastic & Irreversible Climate Change Thomas S. Lontzek (University of Zurich and RDCEP) joint work with Yongyang Cai and Kenneth L. Judd (both at Hoover Institution, RDCEP and NBER)
More informationGeostatistical Modeling for Large Data Sets: Low-rank methods
Geostatistical Modeling for Large Data Sets: Low-rank methods Whitney Huang, Kelly-Ann Dixon Hamil, and Zizhuang Wu Department of Statistics Purdue University February 22, 2016 Outline Motivation Low-rank
More informationBayesian linear regression
Bayesian linear regression Linear regression is the basis of most statistical modeling. The model is Y i = X T i β + ε i, where Y i is the continuous response X i = (X i1,..., X ip ) T is the corresponding
More informationLinear Classification: Probabilistic Generative Models
Linear Classification: Probabilistic Generative Models Sargur N. University at Buffalo, State University of New York USA 1 Linear Classification using Probabilistic Generative Models Topics 1. Overview
More informationThe consequences of misspecifying the random effects distribution when fitting generalized linear mixed models
The consequences of misspecifying the random effects distribution when fitting generalized linear mixed models John M. Neuhaus Charles E. McCulloch Division of Biostatistics University of California, San
More informationLecture 26: Likelihood ratio tests
Lecture 26: Likelihood ratio tests Likelihood ratio When both H 0 and H 1 are simple (i.e., Θ 0 = {θ 0 } and Θ 1 = {θ 1 }), Theorem 6.1 applies and a UMP test rejects H 0 when f θ1 (X) f θ0 (X) > c 0 for
More informationAn Implementation of Dynamic Causal Modelling
An Implementation of Dynamic Causal Modelling Christian Himpe 24.01.2011 Overview Contents: 1 Intro 2 Model 3 Parameter Estimation 4 Examples Motivation Motivation: How are brain regions coupled? Motivation
More informationBayesian Estimation of DSGE Models 1 Chapter 3: A Crash Course in Bayesian Inference
1 The views expressed in this paper are those of the authors and do not necessarily reflect the views of the Federal Reserve Board of Governors or the Federal Reserve System. Bayesian Estimation of DSGE
More informationStat260: Bayesian Modeling and Inference Lecture Date: February 10th, Jeffreys priors. exp 1 ) p 2
Stat260: Bayesian Modeling and Inference Lecture Date: February 10th, 2010 Jeffreys priors Lecturer: Michael I. Jordan Scribe: Timothy Hunter 1 Priors for the multivariate Gaussian Consider a multivariate
More informationIntroduction to Gaussian Processes
Introduction to Gaussian Processes Neil D. Lawrence GPSS 10th June 2013 Book Rasmussen and Williams (2006) Outline The Gaussian Density Covariance from Basis Functions Basis Function Representations Constructing
More informationScaling up Bayesian Inference
Scaling up Bayesian Inference David Dunson Departments of Statistical Science, Mathematics & ECE, Duke University May 1, 2017 Outline Motivation & background EP-MCMC amcmc Discussion Motivation & background
More informationBayesian non-parametric model to longitudinally predict churn
Bayesian non-parametric model to longitudinally predict churn Bruno Scarpa Università di Padova Conference of European Statistics Stakeholders Methodologists, Producers and Users of European Statistics
More informationPh.D. Qualifying Exam Friday Saturday, January 6 7, 2017
Ph.D. Qualifying Exam Friday Saturday, January 6 7, 2017 Put your solution to each problem on a separate sheet of paper. Problem 1. (5106) Let X 1, X 2,, X n be a sequence of i.i.d. observations from a
More informationNonparametric Bayes Uncertainty Quantification
Nonparametric Bayes Uncertainty Quantification David Dunson Department of Statistical Science, Duke University Funded from NIH R01-ES017240, R01-ES017436 & ONR Review of Bayes Intro to Nonparametric Bayes
More informationAn Introduction to Spectral Learning
An Introduction to Spectral Learning Hanxiao Liu November 8, 2013 Outline 1 Method of Moments 2 Learning topic models using spectral properties 3 Anchor words Preliminaries X 1,, X n p (x; θ), θ = (θ 1,
More informationBayesian Calibration of Inexact Computer Models
Bayesian Calibration of Inexact Computer Models James Matuk Research Group in Design of Physical and Computer Experiments March 5, 2018 James Matuk (STAT 8750.02) Calibration of Inexact Computer Models
More informationBayesian Support Vector Machines for Feature Ranking and Selection
Bayesian Support Vector Machines for Feature Ranking and Selection written by Chu, Keerthi, Ong, Ghahramani Patrick Pletscher pat@student.ethz.ch ETH Zurich, Switzerland 12th January 2006 Overview 1 Introduction
More informationSupporting Information for Glacial Atlantic overturning increased by wind stress in climate models
GEOPHYSICAL RESEARCH LETTERS Supporting Information for Glacial Atlantic overturning increased by wind stress in climate models Juan Muglia 1 and Andreas Schmittner 1 Contents of this file 1. Figures S1
More informationBayesian inference & process convolution models Dave Higdon, Statistical Sciences Group, LANL
1 Bayesian inference & process convolution models Dave Higdon, Statistical Sciences Group, LANL 2 MOVING AVERAGE SPATIAL MODELS Kernel basis representation for spatial processes z(s) Define m basis functions
More informationCPSC 540: Machine Learning
CPSC 540: Machine Learning MCMC and Non-Parametric Bayes Mark Schmidt University of British Columbia Winter 2016 Admin I went through project proposals: Some of you got a message on Piazza. No news is
More informationBasic math for biology
Basic math for biology Lei Li Florida State University, Feb 6, 2002 The EM algorithm: setup Parametric models: {P θ }. Data: full data (Y, X); partial data Y. Missing data: X. Likelihood and maximum likelihood
More informationRiemann Manifold Methods in Bayesian Statistics
Ricardo Ehlers ehlers@icmc.usp.br Applied Maths and Stats University of São Paulo, Brazil Working Group in Statistical Learning University College Dublin September 2015 Bayesian inference is based on Bayes
More informationGWAS V: Gaussian processes
GWAS V: Gaussian processes Dr. Oliver Stegle Christoh Lippert Prof. Dr. Karsten Borgwardt Max-Planck-Institutes Tübingen, Germany Tübingen Summer 2011 Oliver Stegle GWAS V: Gaussian processes Summer 2011
More informationDensity Estimation: ML, MAP, Bayesian estimation
Density Estimation: ML, MAP, Bayesian estimation CE-725: Statistical Pattern Recognition Sharif University of Technology Spring 2013 Soleymani Outline Introduction Maximum-Likelihood Estimation Maximum
More informationA new Hierarchical Bayes approach to ensemble-variational data assimilation
A new Hierarchical Bayes approach to ensemble-variational data assimilation Michael Tsyrulnikov and Alexander Rakitko HydroMetCenter of Russia College Park, 20 Oct 2014 Michael Tsyrulnikov and Alexander
More informationStat 710: Mathematical Statistics Lecture 12
Stat 710: Mathematical Statistics Lecture 12 Jun Shao Department of Statistics University of Wisconsin Madison, WI 53706, USA Jun Shao (UW-Madison) Stat 710, Lecture 12 Feb 18, 2009 1 / 11 Lecture 12:
More informationGaussian predictive process models for large spatial data sets.
Gaussian predictive process models for large spatial data sets. Sudipto Banerjee, Alan E. Gelfand, Andrew O. Finley, and Huiyan Sang Presenters: Halley Brantley and Chris Krut September 28, 2015 Overview
More informationThe joint posterior distribution of the unknown parameters and hidden variables, given the
DERIVATIONS OF THE FULLY CONDITIONAL POSTERIOR DENSITIES The joint posterior distribution of the unknown parameters and hidden variables, given the data, is proportional to the product of the joint prior
More informationQuarter degree resolution ocean component of the Norwegian Earth System Model
Quarter degree resolution ocean component of the Norwegian Earth System Model Mats Bentsen 1,2, Mehmet Ilicak 1,2, and Helge Drange 3,2 1 Uni, Uni Research Ltd 2 Bjerknes Centre for Research 3 Geophysical
More informationAsymptotic Multivariate Kriging Using Estimated Parameters with Bayesian Prediction Methods for Non-linear Predictands
Asymptotic Multivariate Kriging Using Estimated Parameters with Bayesian Prediction Methods for Non-linear Predictands Elizabeth C. Mannshardt-Shamseldin Advisor: Richard L. Smith Duke University Department
More informationThe Bayesian approach to inverse problems
The Bayesian approach to inverse problems Youssef Marzouk Department of Aeronautics and Astronautics Center for Computational Engineering Massachusetts Institute of Technology ymarz@mit.edu, http://uqgroup.mit.edu
More informationNonparametric Bayesian Methods - Lecture I
Nonparametric Bayesian Methods - Lecture I Harry van Zanten Korteweg-de Vries Institute for Mathematics CRiSM Masterclass, April 4-6, 2016 Overview of the lectures I Intro to nonparametric Bayesian statistics
More informationNeutron inverse kinetics via Gaussian Processes
Neutron inverse kinetics via Gaussian Processes P. Picca Politecnico di Torino, Torino, Italy R. Furfaro University of Arizona, Tucson, Arizona Outline Introduction Review of inverse kinetics techniques
More information. D CR Nomenclature D 1
. D CR Nomenclature D 1 Appendix D: CR NOMENCLATURE D 2 The notation used by different investigators working in CR formulations has not coalesced, since the topic is in flux. This Appendix identifies the
More informationHierarchical Modelling for Multivariate Spatial Data
Hierarchical Modelling for Multivariate Spatial Data Geography 890, Hierarchical Bayesian Models for Environmental Spatial Data Analysis February 15, 2011 1 Point-referenced spatial data often come as
More informationGeneralized Linear Models. Kurt Hornik
Generalized Linear Models Kurt Hornik Motivation Assuming normality, the linear model y = Xβ + e has y = β + ε, ε N(0, σ 2 ) such that y N(μ, σ 2 ), E(y ) = μ = β. Various generalizations, including general
More informationLecture 1: Center for Uncertainty Quantification. Alexander Litvinenko. Computation of Karhunen-Loeve Expansion:
tifica Lecture 1: Computation of Karhunen-Loeve Expansion: Alexander Litvinenko http://sri-uq.kaust.edu.sa/ Stochastic PDEs We consider div(κ(x, ω) u) = f (x, ω) in G, u = 0 on G, with stochastic coefficients
More informationComputer Emulation With Density Estimation
Computer Emulation With Density Estimation Jake Coleman, Robert Wolpert May 8, 2017 Jake Coleman, Robert Wolpert Emulation and Density Estimation May 8, 2017 1 / 17 Computer Emulation Motivation Expensive
More informationADVANCED MACHINE LEARNING ADVANCED MACHINE LEARNING. Non-linear regression techniques Part - II
1 Non-linear regression techniques Part - II Regression Algorithms in this Course Support Vector Machine Relevance Vector Machine Support vector regression Boosting random projections Relevance vector
More informationAn introduction to Bayesian statistics and model calibration and a host of related topics
An introduction to Bayesian statistics and model calibration and a host of related topics Derek Bingham Statistics and Actuarial Science Simon Fraser University Cast of thousands have participated in the
More informationComputer Vision Group Prof. Daniel Cremers. 9. Gaussian Processes - Regression
Group Prof. Daniel Cremers 9. Gaussian Processes - Regression Repetition: Regularized Regression Before, we solved for w using the pseudoinverse. But: we can kernelize this problem as well! First step:
More informationNew Insights into History Matching via Sequential Monte Carlo
New Insights into History Matching via Sequential Monte Carlo Associate Professor Chris Drovandi School of Mathematical Sciences ARC Centre of Excellence for Mathematical and Statistical Frontiers (ACEMS)
More informationConsistency of the maximum likelihood estimator for general hidden Markov models
Consistency of the maximum likelihood estimator for general hidden Markov models Jimmy Olsson Centre for Mathematical Sciences Lund University Nordstat 2012 Umeå, Sweden Collaborators Hidden Markov models
More informationHierarchical Modeling for Multivariate Spatial Data
Hierarchical Modeling for Multivariate Spatial Data Sudipto Banerjee 1 and Andrew O. Finley 2 1 Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota, U.S.A. 2 Department
More informationCourse topics (tentative) The role of random effects
Course topics (tentative) random effects linear mixed models analysis of variance frequentist likelihood-based inference (MLE and REML) prediction Bayesian inference The role of random effects Rasmus Waagepetersen
More informationLecture: Gaussian Process Regression. STAT 6474 Instructor: Hongxiao Zhu
Lecture: Gaussian Process Regression STAT 6474 Instructor: Hongxiao Zhu Motivation Reference: Marc Deisenroth s tutorial on Robot Learning. 2 Fast Learning for Autonomous Robots with Gaussian Processes
More informationICML Scalable Bayesian Inference on Point processes. with Gaussian Processes. Yves-Laurent Kom Samo & Stephen Roberts
ICML 2015 Scalable Nonparametric Bayesian Inference on Point Processes with Gaussian Processes Machine Learning Research Group and Oxford-Man Institute University of Oxford July 8, 2015 Point Processes
More informationLecture : Probabilistic Machine Learning
Lecture : Probabilistic Machine Learning Riashat Islam Reasoning and Learning Lab McGill University September 11, 2018 ML : Many Methods with Many Links Modelling Views of Machine Learning Machine Learning
More informationGaussian processes for uncertainty quantification in computer experiments
Gaussian processes for uncertainty quantification in computer experiments Richard Wilkinson University of Nottingham Gaussian process summer school, Sheffield 2013 Richard Wilkinson (Nottingham) GPs for
More informationStatistical Tools and Techniques for Solar Astronomers
Statistical Tools and Techniques for Solar Astronomers Alexander W Blocker Nathan Stein SolarStat 2012 Outline Outline 1 Introduction & Objectives 2 Statistical issues with astronomical data 3 Example:
More informationCalibrating Environmental Engineering Models and Uncertainty Analysis
Models and Cornell University Oct 14, 2008 Project Team Christine Shoemaker, co-pi, Professor of Civil and works in applied optimization, co-pi Nikolai Blizniouk, PhD student in Operations Research now
More informationIntroduction to emulators - the what, the when, the why
School of Earth and Environment INSTITUTE FOR CLIMATE & ATMOSPHERIC SCIENCE Introduction to emulators - the what, the when, the why Dr Lindsay Lee 1 What is a simulator? A simulator is a computer code
More informationSpatially Smoothed Kernel Density Estimation via Generalized Empirical Likelihood
Spatially Smoothed Kernel Density Estimation via Generalized Empirical Likelihood Kuangyu Wen & Ximing Wu Texas A&M University Info-Metrics Institute Conference: Recent Innovations in Info-Metrics October
More informationTheory of Statistical Tests
Ch 9. Theory of Statistical Tests 9.1 Certain Best Tests How to construct good testing. For simple hypothesis H 0 : θ = θ, H 1 : θ = θ, Page 1 of 100 where Θ = {θ, θ } 1. Define the best test for H 0 H
More informationCOMP 551 Applied Machine Learning Lecture 20: Gaussian processes
COMP 55 Applied Machine Learning Lecture 2: Gaussian processes Instructor: Ryan Lowe (ryan.lowe@cs.mcgill.ca) Slides mostly by: (herke.vanhoof@mcgill.ca) Class web page: www.cs.mcgill.ca/~hvanho2/comp55
More informationReview. DS GA 1002 Statistical and Mathematical Models. Carlos Fernandez-Granda
Review DS GA 1002 Statistical and Mathematical Models http://www.cims.nyu.edu/~cfgranda/pages/dsga1002_fall16 Carlos Fernandez-Granda Probability and statistics Probability: Framework for dealing with
More informationVirtual Sensors and Large-Scale Gaussian Processes
Virtual Sensors and Large-Scale Gaussian Processes Ashok N. Srivastava, Ph.D. Principal Investigator, IVHM Project Group Lead, Intelligent Data Understanding ashok.n.srivastava@nasa.gov Coauthors: Kamalika
More informationIntroduction to Machine Learning
Outline Introduction to Machine Learning Bayesian Classification Varun Chandola March 8, 017 1. {circular,large,light,smooth,thick}, malignant. {circular,large,light,irregular,thick}, malignant 3. {oval,large,dark,smooth,thin},
More informationFrequentist-Bayesian Model Comparisons: A Simple Example
Frequentist-Bayesian Model Comparisons: A Simple Example Consider data that consist of a signal y with additive noise: Data vector (N elements): D = y + n The additive noise n has zero mean and diagonal
More informationHierarchical Modeling for Univariate Spatial Data
Hierarchical Modeling for Univariate Spatial Data Geography 890, Hierarchical Bayesian Models for Environmental Spatial Data Analysis February 15, 2011 1 Spatial Domain 2 Geography 890 Spatial Domain This
More informationvariability of the model, represented by σ 2 and not accounted for by Xβ
Posterior Predictive Distribution Suppose we have observed a new set of explanatory variables X and we want to predict the outcomes ỹ using the regression model. Components of uncertainty in p(ỹ y) variability
More informationCan we do statistical inference in a non-asymptotic way? 1
Can we do statistical inference in a non-asymptotic way? 1 Guang Cheng 2 Statistics@Purdue www.science.purdue.edu/bigdata/ ONR Review Meeting@Duke Oct 11, 2017 1 Acknowledge NSF, ONR and Simons Foundation.
More informationMachine Learning - MT & 5. Basis Expansion, Regularization, Validation
Machine Learning - MT 2016 4 & 5. Basis Expansion, Regularization, Validation Varun Kanade University of Oxford October 19 & 24, 2016 Outline Basis function expansion to capture non-linear relationships
More informationA general hybrid formulation of the background-error covariance matrix for ensemble-variational ocean data assimilation
.. A general hybrid formulation of the background-error covariance matrix for ensemble-variational ocean data assimilation Anthony Weaver Andrea Piacentini, Serge Gratton, Selime Gürol, Jean Tshimanga
More informationNonparametric Drift Estimation for Stochastic Differential Equations
Nonparametric Drift Estimation for Stochastic Differential Equations Gareth Roberts 1 Department of Statistics University of Warwick Brazilian Bayesian meeting, March 2010 Joint work with O. Papaspiliopoulos,
More information