Langevin Methods. Burkhard Dünweg Max Planck Institute for Polymer Research Ackermannweg 10 D Mainz Germany

Size: px
Start display at page:

Download "Langevin Methods. Burkhard Dünweg Max Planck Institute for Polymer Research Ackermannweg 10 D Mainz Germany"

Transcription

1 Langevin Methods Burkhard Dünweg Max Planck Institute for Polymer Research Ackermannweg 1 D Mainz Germany

2 Motivation Original idea: Fast and slow degrees of freedom Example: Brownian motion Replace fast degrees by friction and random noise Conceptually and technically simpler Learn the mathematics of random noise! Technical interest: Original system: freedom Deterministic, no additional degrees of Add friction and noise to stabilize equations of motion Permitted if noise does not alter the (relevant) dynamics, or only static properties are sought

3 Markov Processes Continuous (state) space (x, usually multi dimensional) Continuous time (t) Conditional probability for x (t ) x(t): P(x, t x, t ) does not depend on previous history (t < t ) Z dxp(x, t x, t ) = 1 Chapman Kolmogorov: P(x, t x, t ) = δ(x x ) x x t t 1 t P(x, t x, t ) = Z dx 1 P(x, t x 1, t 1 )P(x 1, t 1 x, t )

4 Formal Moment Expansion Consider: p(x) > R dx p(x) = 1 µ n = R dx x n p(x) exists for all x Then p(k) = Z dx exp(ikx)p(x) = X n= (ik) n n! µ n I. e. unique p(x) {µ n } p(x) = X n= «n µ n x n! δ(x) Proof: Both sides produce the same moments!

5 Kramers Moyal Expansion Define µ n (t; x, t ) = (x x ) n (t, t ) Z = dx (x x ) n P(x, t x, t ) (mean displacement, mean square displacement etc.) = P(x, t x, t ) X «n δ(x x ) 1 x n! µ n(t; x, t ) n= particularly good for short times. Chapman Kolmogorov (small τ): = = P(x, t x, t ) Z X dx 1 n= x P(x 1, t τ x, t ) X n= «n δ(x x 1 ) 1 n! µ n(t; x 1, t τ) «n 1 x n! µ n(t; x, t τ) P(x, t τ x, t )

6 Subtract n = term: 1 τ [P(x, t x, t ) P(x, t τ x, t )] = 1 X «n 1 τ x n! µ n(t; x, t τ)p(x, t τ x, t ) n=1 Short time behavior of the moments defines the Kramers Moyal coefficients D (n) (o(τ): Terms of order higher than linear!): (x x ) n (t + τ, t ) = n!d (n) (x, t )τ + o(τ) µ n (t; x, t τ) = n!d (n) (x, t τ)τ + o(τ) = n!d (n) (x, t)τ + o(τ) Similarly P(x, t τ x, t ) P(x, t x, t ) Hence t P(x, t x, t ) = X n=1 «n D (n) (x, t)p(x, t x, t ) x generalized Fokker Planck equation Shorthand: t P(x, t x, t ) = LP(x, t x, t )

7 Only four types of processes: Pawula Theorem 1. Expansion stops at n = : No dynamics 2. Expansion stops at n = 1: Deterministic processes ( Liouville equation) 3. Expansion stops at n = 2: Fokker Planck / diffusion processes 4. Expansion stops at n = Proof: See Risken, The Fokker Planck Equation. Truncation at finite order n > 2 would produce P <!!

8 Proof of Pawula Theorem Define scalar product Z f g = dx P(x, t x, t )f (x)g(x) Moments: µ n = Z dx P(x, t x, t )(x x ) n I. e. µ m+n = (x x ) m (x x ) n Schwarz inequality: µ 2 m+n µ 2mµ 2n D (m+n)2 (2m)!(2n)! [(m + n)!] 2D(2m) D (2n) for m 1, n 1 Suppose D (2N) = D (2N+1) =... = Set m = 1, n = N, N + 1,...: D (N+1) = D (N+2) =... = Zeroing always works except for very small N where no new information is obtained.

9 N = 1: D (2) =... = D (2) =... = N = 2: D (4) =... = D (3) =... = N = 3: D (6) =... = D (4) =... = N = 4: D (8) =... = D (5) =... = etc. Thus: Truncation at any finite order implies D (3) = D (4) =... =.

10 Goal Langevin simulation Generation of stochastic trajectories for a process of type 3 with a discretization time step τ Physical input: Drift coefficient D (1) ( deterministic part) Diffusion coefficient D (2) ( stochastic part)

11 We know for the displacements: Euler Algorithm x i = D (1) i (x, t)τ + o(τ) x i x j = 2D (2) ij (x, t)τ + o(τ) ( x) n = o(τ) n 3 Satisfied by x i (t + τ) = x i (t) + D (1) i r i random variables with: τ + 2τ r i r i = r i r j = D ij All higher moments exist Some distribution, e. g. Gaussian or uniform (B. D. & W. Paul, Int. J. Mod. Phys. C 2, 817 (1991)) Stochastic term dominates for τ Large number of independent kicks Central Limit Theorem Gaussian behavior Gaussian white noise Often: D ij has a simple structure (diagonal, constant, or both) Non diagonal D ij for systems with hydrodynamic interactions (correlations in the stochastic displacements): Ermak & MacCammon, J. Chem. Phys. 69, 1352 (1978)

12 A Simple Example d = 1 diffusion with constant drift. D (1) = const., D (2) = const. Trajectories: x t continuous but not differentiable! Solution of the Fokker Planck equation: P(x, t, ) = 1 4πD (2) t exp (x! D(1) t) 2 4D (2) t P(x,t) t=1 t= x t=7

13 Langevin Equation Formal way of writing the Euler algorithm (stochastic differential equation): d dt x i = D (1) i + f i (t) f i (t) Gaussian white noise with properties f i = f i (t)f j (t ) = 2D ij δ(t t ) Thus x i x j = Z τ dt Z τ dt f i (t)f j (t ) = 2D ij τ Higher order moments: R τ dt f i(t) is Gaussian!

14 Thermal Systems: The Fluctuation Dissipation Theorem Langevin dynamics to describe: Decay into thermal equilibrium Thermal fluctuations in equilibrium D (1), D (2) do not explicitly depend on time Equilibrium state: Hamiltonian H(x) β = 1/(k B T) Z = R dx exp( βh) ρ(x) = Z 1 exp( βh) Necessary: P(x, t x, ) ρ(x) for t L exp( βh) = Balance between drift and diffusion defines temperature.

15 Definition of the process via Ito vs. Stratonovich Langevin equation plus interpretation of the stochastic term! So far: Ito interpretation Other common interpretation: Stratonovich: Assume that the trajectories are differentiable, and take the limit of vanishing correlation time at the end! Consider d x = F(x) + σ(x)f(t) dt F deterministic part σ(x) noise strength (multiplicative noise) f = f(t)f(t ) = 2δ(t t )

16 d x = F(x) + σ(x)f(t) dt Ito: Z τ dt σ(x(t))f(t) σ(x()) fiz τ fl dt σ(x(t))f(t) Z τ = dt f(t) Stratonovich: Z τ dt σ(x(t))f(t) σ(x()) = σ(x()) fiz τ Z τ Z τ dt f(t) + dσ dx dt f(t) + σ dσ dx fl dt σ(x(t))f(t) = + σ dσ dx τ + o(τ) spurious drift Z τ Z τ dt x(t)f(t) +... dt Z t dt f(t )f(t) +...

17 Brownian Dynamics System of particles Coordinates r i Friction coefficients ζ i Diffusion coefficients D i Potential energy U ( H) Forces F i = U r i d dt r i = 1 Fi + δ i ζ i D E δi = D δi (t) δ j (t )E = 2D i 1 δ ij δ(t t ) I. e. L = X i r i 1 ζ i F i + X i «2 D i r i X i r i L exp( βh) =» 1 H H βd i exp( βh) = ζ i r i r i D i = k BT ζ i Einstein relation

18 Stochastic Dynamics Generalized coordinates q i Generalized canonically conjugate momenta p i Hamiltonian H Hamilton s equations of motion, augmented by friction and noise terms: d dt q i = H p i d dt p i = H q i ζ i H p i + σ i f i ζ i = ζ i ({q i }) σ i = σ i ({q i }) f i = fi (t)f j (t ) = 2δ ij δ(t t ) L = L H + L SD

19 L H = X i H + X q i p i i H p i q i = X i H p i q i + X i H q i p i L H exp( βh) = o.k. L SD = X i p i» ζ i H p i + σ 2 i p i L SD exp( βh) = X i p i» ζ i H p i βσ 2 i H e βh = p i σ 2 i = k BTζ i Simple recipe for MD with hard potentials & weak noise: Standard velocity Verlet Add friction and noise at those instances where forces are calculated Symplectic algorithm in the ζ = limit

20 Dissipative Particle Dynamics (DPD) Disadvantages of SD: v = reference frame is special Galileo invariance is broken Global momentum is not conserved No proper description of hydrodynamics Idea: Dampen relative velocities of nearby particles Stochastic kicks between pairs of nearby particles satisfying Newton III Result: Galileo invariance Momentum conservation Locality Correct description of hydrodynamics No profile biasing in boundary driven shear simulations

21 In practice: Define ζ(r) (relative) friction for particles at distance r σ(r) noise strength for particles at distance r r ij = r i r j = r ijˆr ij Friction force along interparticle axis: F (fr) i = X j ζ(r ij ) [( v i v j ) ˆr ij ] ˆr ij Pi F (fr) i = (antisymmetric matrix in ij) Stochastic force along interparticle axis: F (st) i = X j σ(r ij ) η ij (t) ˆr ij η ij = η ji η ij = ηij (t)η kl (t ) = 2(δ ik δ jl + δ il δ jk )δ(t t ) Pi F (st) i = (similar)

22 d dt r i = 1 m i p i d dt p i = F i + F (fr) i + F (st) i L = L H + L DPD L DPD = X ij X i j + X i = X i ζ(r ij )ˆr ij p i σ 2 (r ij ) ˆr ij p i X j( =i) ˆr ij + σ 2 (r ij )ˆr ij σ 2 (r ij ) X p i j( =i)» H ˆr ij H p i p j «ˆr ij " p i «ˆr ij p i «2 ζ(r ij )ˆr ij p j «# p j «H H «p i p j Fluctuation dissipation theorem: σ 2 (r) = k B Tζ(r)

23 Force Biased Monte Carlo Idea: Use a BD step (with large τ) as a trial move for Monte Carlo. Accept / reject with Metropolis criterion correct Boltzmann distribution without discretization errors Just d = 1, set γ = τ/ζ. Algorithm: Start position x Calculate energy U = U(x) Calculate force F = F(x) = U/x Trial move: Generate x = x + γf + p 2k B Tγ ρ ρ Gaussian with ρ = D ρ 2E = 1 Hence, w ap (x x ) = 1! exp ρ2 2π 2 = w 1 Calculate energy U = U(x ) Calculate U = U U Calculate force F = F(x ) Calculate ρ = (2k B Tγ) 1/2 `x x γf (random number needed to go back)

24 Hence, w ap (x x) = 1! exp ρ 2 2π 2 = w 2 Calculate w acc Accept with probability w acc w acc =? Detailed balance: w ap (x x ) w acc (x x ) w ap (x x) w acc (x x) = exp( β U) I. e. standard Metropolis with exp( β U) exp( β U) w 2 w 1

25 Higher Order Algorithms Additive noise: Systematic approach via operator factorization. Idea: Fokker Planck equation: t P = LP P = exp(lt)δ(x x ) Factorize the exponential, each factor such that the result is known. Example (2nd order): L = L det + L stoch (deterministic propagation, stochastic diffusion) exp(lt) = exp(l stoch t/2) exp(l det t) exp(l stoch t/2) + O(t 3 ) exp(l stoch t/2) acting on δ(x x ): Exactly known solution Gaussian distribution / solution of the diffusion equation exp(l det t): Just deterministic propagation. Can be done up to any desired accuracy with known methods (e. g. Runge Kutta) State of the art: Fourth order: H. A. Forbert, S. A. Chin, Phys. Rev. E 63, 1673 (2).

26 Multiplicative noise: Schemes of higher order than Euler are very difficult to construct and apply (Greiner, Strittmatter, Honerkamp, J. Stat. Phys. 51, 95 (1988)). No known general solution for a diffusion equation of type t P = 2 x 2D(x)P

Stochastic Particle Methods for Rarefied Gases

Stochastic Particle Methods for Rarefied Gases CCES Seminar WS 2/3 Stochastic Particle Methods for Rarefied Gases Julian Köllermeier RWTH Aachen University Supervisor: Prof. Dr. Manuel Torrilhon Center for Computational Engineering Science Mathematics

More information

ON ALGORITHMS FOR BROWNIAN DYNAMICS COMPUTER SIMULATIONS

ON ALGORITHMS FOR BROWNIAN DYNAMICS COMPUTER SIMULATIONS COMPUTATIONAL METHODS IN SCIENCE AND TECHNOLOGY 4,35-42 (1998) ON ALGORITHMS FOR BROWNIAN DYNAMICS COMPUTER SIMULATIONS ARKADIUSZ C. BRAŃKA Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego

More information

BROWNIAN DYNAMICS SIMULATIONS WITH HYDRODYNAMICS. Abstract

BROWNIAN DYNAMICS SIMULATIONS WITH HYDRODYNAMICS. Abstract BROWNIAN DYNAMICS SIMULATIONS WITH HYDRODYNAMICS Juan J. Cerdà 1 1 Institut für Computerphysik, Pfaffenwaldring 27, Universität Stuttgart, 70569 Stuttgart, Germany. (Dated: July 21, 2009) Abstract - 1

More information

Introduction to nonequilibrium physics

Introduction to nonequilibrium physics Introduction to nonequilibrium physics Jae Dong Noh December 18, 2016 Preface This is a note for the lecture given in the 2016 KIAS-SNU Physics Winter Camp which is held at KIAS in December 17 23, 2016.

More information

Brownian Motion: Fokker-Planck Equation

Brownian Motion: Fokker-Planck Equation Chapter 7 Brownian Motion: Fokker-Planck Equation The Fokker-Planck equation is the equation governing the time evolution of the probability density of the Brownian particla. It is a second order differential

More information

16. Working with the Langevin and Fokker-Planck equations

16. Working with the Langevin and Fokker-Planck equations 16. Working with the Langevin and Fokker-Planck equations In the preceding Lecture, we have shown that given a Langevin equation (LE), it is possible to write down an equivalent Fokker-Planck equation

More information

Hydrodynamics, Thermodynamics, and Mathematics

Hydrodynamics, Thermodynamics, and Mathematics Hydrodynamics, Thermodynamics, and Mathematics Hans Christian Öttinger Department of Mat..., ETH Zürich, Switzerland Thermodynamic admissibility and mathematical well-posedness 1. structure of equations

More information

LANGEVIN EQUATION AND THERMODYNAMICS

LANGEVIN EQUATION AND THERMODYNAMICS LANGEVIN EQUATION AND THERMODYNAMICS RELATING STOCHASTIC DYNAMICS WITH THERMODYNAMIC LAWS November 10, 2017 1 / 20 MOTIVATION There are at least three levels of description of classical dynamics: thermodynamic,

More information

Inverse Langevin approach to time-series data analysis

Inverse Langevin approach to time-series data analysis Inverse Langevin approach to time-series data analysis Fábio Macêdo Mendes Anníbal Dias Figueiredo Neto Universidade de Brasília Saratoga Springs, MaxEnt 2007 Outline 1 Motivation 2 Outline 1 Motivation

More information

Stochastic equations for thermodynamics

Stochastic equations for thermodynamics J. Chem. Soc., Faraday Trans. 93 (1997) 1751-1753 [arxiv 1503.09171] Stochastic equations for thermodynamics Roumen Tsekov Department of Physical Chemistry, University of Sofia, 1164 Sofia, ulgaria The

More information

Control Theory in Physics and other Fields of Science

Control Theory in Physics and other Fields of Science Michael Schulz Control Theory in Physics and other Fields of Science Concepts, Tools, and Applications With 46 Figures Sprin ger 1 Introduction 1 1.1 The Aim of Control Theory 1 1.2 Dynamic State of Classical

More information

Brownian Motion and Langevin Equations

Brownian Motion and Langevin Equations 1 Brownian Motion and Langevin Equations 1.1 Langevin Equation and the Fluctuation- Dissipation Theorem The theory of Brownian motion is perhaps the simplest approximate way to treat the dynamics of nonequilibrium

More information

FORCE ENERGY. only if F = F(r). 1 Nano-scale (10 9 m) 2 Nano to Micro-scale (10 6 m) 3 Nano to Meso-scale (10 3 m)

FORCE ENERGY. only if F = F(r). 1 Nano-scale (10 9 m) 2 Nano to Micro-scale (10 6 m) 3 Nano to Meso-scale (10 3 m) What is the force? CEE 618 Scientific Parallel Computing (Lecture 12) Dissipative Hydrodynamics (DHD) Albert S. Kim Department of Civil and Environmental Engineering University of Hawai i at Manoa 2540

More information

CHAPTER V. Brownian motion. V.1 Langevin dynamics

CHAPTER V. Brownian motion. V.1 Langevin dynamics CHAPTER V Brownian motion In this chapter, we study the very general paradigm provided by Brownian motion. Originally, this motion is that a heavy particle, called Brownian particle, immersed in a fluid

More information

Anomalous Transport and Fluctuation Relations: From Theory to Biology

Anomalous Transport and Fluctuation Relations: From Theory to Biology Anomalous Transport and Fluctuation Relations: From Theory to Biology Aleksei V. Chechkin 1, Peter Dieterich 2, Rainer Klages 3 1 Institute for Theoretical Physics, Kharkov, Ukraine 2 Institute for Physiology,

More information

Statistical Mechanics of Active Matter

Statistical Mechanics of Active Matter Statistical Mechanics of Active Matter Umberto Marini Bettolo Marconi University of Camerino, Italy Naples, 24 May,2017 Umberto Marini Bettolo Marconi (2017) Statistical Mechanics of Active Matter 2017

More information

arxiv: v1 [cond-mat.stat-mech] 24 Jan 2019

arxiv: v1 [cond-mat.stat-mech] 24 Jan 2019 Generalization of Stokes-Einstein relation to coordinate dependent damping and diffusivity: An apparent conflict A. Bhattacharyay arxiv:1901.08358v1 [cond-mat.stat-mech] 24 Jan 2019 Indian Institute of

More information

Handbook of Stochastic Methods

Handbook of Stochastic Methods C. W. Gardiner Handbook of Stochastic Methods for Physics, Chemistry and the Natural Sciences Third Edition With 30 Figures Springer Contents 1. A Historical Introduction 1 1.1 Motivation I 1.2 Some Historical

More information

Non-equilibrium phenomena and fluctuation relations

Non-equilibrium phenomena and fluctuation relations Non-equilibrium phenomena and fluctuation relations Lamberto Rondoni Politecnico di Torino Beijing 16 March 2012 http://www.rarenoise.lnl.infn.it/ Outline 1 Background: Local Thermodyamic Equilibrium 2

More information

The concentration of a drug in blood. Exponential decay. Different realizations. Exponential decay with noise. dc(t) dt.

The concentration of a drug in blood. Exponential decay. Different realizations. Exponential decay with noise. dc(t) dt. The concentration of a drug in blood Exponential decay C12 concentration 2 4 6 8 1 C12 concentration 2 4 6 8 1 dc(t) dt = µc(t) C(t) = C()e µt 2 4 6 8 1 12 time in minutes 2 4 6 8 1 12 time in minutes

More information

Lecture 4: Numerical Solution of SDEs, Itô Taylor Series, Gaussian Approximations

Lecture 4: Numerical Solution of SDEs, Itô Taylor Series, Gaussian Approximations Lecture 4: Numerical Solution of SDEs, Itô Taylor Series, Gaussian Approximations Simo Särkkä Aalto University, Finland November 18, 2014 Simo Särkkä (Aalto) Lecture 4: Numerical Solution of SDEs November

More information

Lecture 4: Numerical Solution of SDEs, Itô Taylor Series, Gaussian Process Approximations

Lecture 4: Numerical Solution of SDEs, Itô Taylor Series, Gaussian Process Approximations Lecture 4: Numerical Solution of SDEs, Itô Taylor Series, Gaussian Process Approximations Simo Särkkä Aalto University Tampere University of Technology Lappeenranta University of Technology Finland November

More information

Lecture 6: Bayesian Inference in SDE Models

Lecture 6: Bayesian Inference in SDE Models Lecture 6: Bayesian Inference in SDE Models Bayesian Filtering and Smoothing Point of View Simo Särkkä Aalto University Simo Särkkä (Aalto) Lecture 6: Bayesian Inference in SDEs 1 / 45 Contents 1 SDEs

More information

The Truth about diffusion (in liquids)

The Truth about diffusion (in liquids) The Truth about diffusion (in liquids) Aleksandar Donev Courant Institute, New York University & Eric Vanden-Eijnden, Courant In honor of Berni Julian Alder LLNL, August 20th 2015 A. Donev (CIMS) Diffusion

More information

VIII.B Equilibrium Dynamics of a Field

VIII.B Equilibrium Dynamics of a Field VIII.B Equilibrium Dynamics of a Field The next step is to generalize the Langevin formalism to a collection of degrees of freedom, most conveniently described by a continuous field. Let us consider the

More information

This is a Gaussian probability centered around m = 0 (the most probable and mean position is the origin) and the mean square displacement m 2 = n,or

This is a Gaussian probability centered around m = 0 (the most probable and mean position is the origin) and the mean square displacement m 2 = n,or Physics 7b: Statistical Mechanics Brownian Motion Brownian motion is the motion of a particle due to the buffeting by the molecules in a gas or liquid. The particle must be small enough that the effects

More information

MD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky

MD Thermodynamics. Lecture 12 3/26/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky MD Thermodynamics Lecture 1 3/6/18 1 Molecular dynamics The force depends on positions only (not velocities) Total energy is conserved (micro canonical evolution) Newton s equations of motion (second order

More information

Diffusion in the cell

Diffusion in the cell Diffusion in the cell Single particle (random walk) Microscopic view Macroscopic view Measuring diffusion Diffusion occurs via Brownian motion (passive) Ex.: D = 100 μm 2 /s for typical protein in water

More information

Smoluchowski Diffusion Equation

Smoluchowski Diffusion Equation Chapter 4 Smoluchowski Diffusion Equation Contents 4. Derivation of the Smoluchoswki Diffusion Equation for Potential Fields 64 4.2 One-DimensionalDiffusoninaLinearPotential... 67 4.2. Diffusion in an

More information

Anomalous Lévy diffusion: From the flight of an albatross to optical lattices. Eric Lutz Abteilung für Quantenphysik, Universität Ulm

Anomalous Lévy diffusion: From the flight of an albatross to optical lattices. Eric Lutz Abteilung für Quantenphysik, Universität Ulm Anomalous Lévy diffusion: From the flight of an albatross to optical lattices Eric Lutz Abteilung für Quantenphysik, Universität Ulm Outline 1 Lévy distributions Broad distributions Central limit theorem

More information

Lecture 12: Detailed balance and Eigenfunction methods

Lecture 12: Detailed balance and Eigenfunction methods Lecture 12: Detailed balance and Eigenfunction methods Readings Recommended: Pavliotis [2014] 4.5-4.7 (eigenfunction methods and reversibility), 4.2-4.4 (explicit examples of eigenfunction methods) Gardiner

More information

Monte Carlo. Lecture 15 4/9/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky

Monte Carlo. Lecture 15 4/9/18. Harvard SEAS AP 275 Atomistic Modeling of Materials Boris Kozinsky Monte Carlo Lecture 15 4/9/18 1 Sampling with dynamics In Molecular Dynamics we simulate evolution of a system over time according to Newton s equations, conserving energy Averages (thermodynamic properties)

More information

Path integrals for classical Markov processes

Path integrals for classical Markov processes Path integrals for classical Markov processes Hugo Touchette National Institute for Theoretical Physics (NITheP) Stellenbosch, South Africa Chris Engelbrecht Summer School on Non-Linear Phenomena in Field

More information

Handbook of Stochastic Methods

Handbook of Stochastic Methods Springer Series in Synergetics 13 Handbook of Stochastic Methods for Physics, Chemistry and the Natural Sciences von Crispin W Gardiner Neuausgabe Handbook of Stochastic Methods Gardiner schnell und portofrei

More information

Stochastic continuity equation and related processes

Stochastic continuity equation and related processes Stochastic continuity equation and related processes Gabriele Bassi c Armando Bazzani a Helmut Mais b Giorgio Turchetti a a Dept. of Physics Univ. of Bologna, INFN Sezione di Bologna, ITALY b DESY, Hamburg,

More information

Ordinary differential equations. Phys 420/580 Lecture 8

Ordinary differential equations. Phys 420/580 Lecture 8 Ordinary differential equations Phys 420/580 Lecture 8 Most physical laws are expressed as differential equations These come in three flavours: initial-value problems boundary-value problems eigenvalue

More information

Citation for published version (APA): Hess, B. (2002). Stochastic concepts in molecular simulation Groningen: s.n.

Citation for published version (APA): Hess, B. (2002). Stochastic concepts in molecular simulation Groningen: s.n. University of Groningen Stochastic concepts in molecular simulation Hess, Berk IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check

More information

F r (t) = 0, (4.2) F (t) = r= r a (t)

F r (t) = 0, (4.2) F (t) = r= r a (t) Chapter 4 Stochastic Equations 4.1 Langevin equation To explain the idea of introduction of the Langevin equation, let us consider the concrete example taken from surface physics: motion of an atom (adatom)

More information

p 1 ( Y p dp) 1/p ( X p dp) 1 1 p

p 1 ( Y p dp) 1/p ( X p dp) 1 1 p Doob s inequality Let X(t) be a right continuous submartingale with respect to F(t), t 1 P(sup s t X(s) λ) 1 λ {sup s t X(s) λ} X + (t)dp 2 For 1 < p

More information

Brownian motion and the Central Limit Theorem

Brownian motion and the Central Limit Theorem Brownian motion and the Central Limit Theorem Amir Bar January 4, 3 Based on Shang-Keng Ma, Statistical Mechanics, sections.,.7 and the course s notes section 6. Introduction In this tutorial we shall

More information

The dynamics of small particles whose size is roughly 1 µmt or. smaller, in a fluid at room temperature, is extremely erratic, and is

The dynamics of small particles whose size is roughly 1 µmt or. smaller, in a fluid at room temperature, is extremely erratic, and is 1 I. BROWNIAN MOTION The dynamics of small particles whose size is roughly 1 µmt or smaller, in a fluid at room temperature, is extremely erratic, and is called Brownian motion. The velocity of such particles

More information

GSHMC: An efficient Markov chain Monte Carlo sampling method. Sebastian Reich in collaboration with Elena Akhmatskaya (Fujitsu Laboratories Europe)

GSHMC: An efficient Markov chain Monte Carlo sampling method. Sebastian Reich in collaboration with Elena Akhmatskaya (Fujitsu Laboratories Europe) GSHMC: An efficient Markov chain Monte Carlo sampling method Sebastian Reich in collaboration with Elena Akhmatskaya (Fujitsu Laboratories Europe) 1. Motivation In the first lecture, we started from a

More information

An alternative approach to dissipative particle dynamics

An alternative approach to dissipative particle dynamics EUROPHYSICS LETTERS 15 July 1999 Europhys. Lett., 47 (2), pp. 145-151 (1999) An alternative approach to dissipative particle dynamics C. P. Lowe Computational Physics, Delft University of Technology Lorentzweg

More information

The Kramers problem and first passage times.

The Kramers problem and first passage times. Chapter 8 The Kramers problem and first passage times. The Kramers problem is to find the rate at which a Brownian particle escapes from a potential well over a potential barrier. One method of attack

More information

Statistical methods in atomistic computer simulations

Statistical methods in atomistic computer simulations Statistical methods in atomistic computer simulations Prof. Michele Ceriotti, michele.ceriotti@epfl.ch This course gives an overview of simulation techniques that are useful for the computational modeling

More information

G : Statistical Mechanics

G : Statistical Mechanics G25.2651: Statistical Mechanics Notes for Lecture 15 Consider Hamilton s equations in the form I. CLASSICAL LINEAR RESPONSE THEORY q i = H p i ṗ i = H q i We noted early in the course that an ensemble

More information

5 Applying the Fokker-Planck equation

5 Applying the Fokker-Planck equation 5 Applying the Fokker-Planck equation We begin with one-dimensional examples, keeping g = constant. Recall: the FPE for the Langevin equation with η(t 1 )η(t ) = κδ(t 1 t ) is = f(x) + g(x)η(t) t = x [f(x)p

More information

Dynamics after Macroscopic Quantum Phenomena or system-bath approach

Dynamics after Macroscopic Quantum Phenomena or system-bath approach Dynamics after Macroscopic Quantum Phenomena or system-bath approach AJL@80: Challenges in Quantum Foundations, Condensed Matter, and Beyond University of Illinois at Urbana-Champaign, IL, USA 2018.03.29-31

More information

Controlled Diffusions and Hamilton-Jacobi Bellman Equations

Controlled Diffusions and Hamilton-Jacobi Bellman Equations Controlled Diffusions and Hamilton-Jacobi Bellman Equations Emo Todorov Applied Mathematics and Computer Science & Engineering University of Washington Winter 2014 Emo Todorov (UW) AMATH/CSE 579, Winter

More information

Collective Effects. Equilibrium and Nonequilibrium Physics

Collective Effects. Equilibrium and Nonequilibrium Physics 1 Collective Effects in Equilibrium and Nonequilibrium Physics: Lecture 5, April 14, 2006 1 Collective Effects in Equilibrium and Nonequilibrium Physics Website: http://cncs.bnu.edu.cn/mccross/course/

More information

Collective Effects. Equilibrium and Nonequilibrium Physics

Collective Effects. Equilibrium and Nonequilibrium Physics Collective Effects in Equilibrium and Nonequilibrium Physics: Lecture 5, April 14, 2006 1 Collective Effects in Equilibrium and Nonequilibrium Physics Website: http://cncs.bnu.edu.cn/mccross/course/ Caltech

More information

New Physical Principle for Monte-Carlo simulations

New Physical Principle for Monte-Carlo simulations EJTP 6, No. 21 (2009) 9 20 Electronic Journal of Theoretical Physics New Physical Principle for Monte-Carlo simulations Michail Zak Jet Propulsion Laboratory California Institute of Technology, Advance

More information

Stochastic Behavior of Dissipative Hamiltonian Systems with Limit Cycles

Stochastic Behavior of Dissipative Hamiltonian Systems with Limit Cycles Stochastic Behavior of Dissipative Hamiltonian Systems with Limit Cycles Wolfgang Mathis Florian Richter Richard Mathis Institut für Theoretische Elektrotechnik, Gottfried Wilhelm Leibniz Universität Hannover,

More information

CEE 618 Scientific Parallel Computing (Lecture 12)

CEE 618 Scientific Parallel Computing (Lecture 12) 1 / 26 CEE 618 Scientific Parallel Computing (Lecture 12) Dissipative Hydrodynamics (DHD) Albert S. Kim Department of Civil and Environmental Engineering University of Hawai i at Manoa 2540 Dole Street,

More information

06. Stochastic Processes: Concepts

06. Stochastic Processes: Concepts University of Rhode Island DigitalCommons@URI Nonequilibrium Statistical Physics Physics Course Materials 2015 06. Stochastic Processes: Concepts Gerhard Müller University of Rhode Island, gmuller@uri.edu

More information

GENERATION OF COLORED NOISE

GENERATION OF COLORED NOISE International Journal of Modern Physics C, Vol. 12, No. 6 (2001) 851 855 c World Scientific Publishing Company GENERATION OF COLORED NOISE LORENZ BARTOSCH Institut für Theoretische Physik, Johann Wolfgang

More information

Lecture 12: Detailed balance and Eigenfunction methods

Lecture 12: Detailed balance and Eigenfunction methods Miranda Holmes-Cerfon Applied Stochastic Analysis, Spring 2015 Lecture 12: Detailed balance and Eigenfunction methods Readings Recommended: Pavliotis [2014] 4.5-4.7 (eigenfunction methods and reversibility),

More information

The Smoluchowski-Kramers Approximation: What model describes a Brownian particle?

The Smoluchowski-Kramers Approximation: What model describes a Brownian particle? The Smoluchowski-Kramers Approximation: What model describes a Brownian particle? Scott Hottovy shottovy@math.arizona.edu University of Arizona Applied Mathematics October 7, 2011 Brown observes a particle

More information

APMA 2811T. By Zhen Li. Today s topic: Lecture 2: Theoretical foundation and parameterization. Sep. 15, 2016

APMA 2811T. By Zhen Li. Today s topic: Lecture 2: Theoretical foundation and parameterization. Sep. 15, 2016 Today s topic: APMA 2811T Dissipative Particle Dynamics Instructor: Professor George Karniadakis Location: 170 Hope Street, Room 118 Time: Thursday 12:00pm 2:00pm Dissipative Particle Dynamics: Foundation,

More information

Anomalous diffusion in biology: fractional Brownian motion, Lévy flights

Anomalous diffusion in biology: fractional Brownian motion, Lévy flights Anomalous diffusion in biology: fractional Brownian motion, Lévy flights Jan Korbel Faculty of Nuclear Sciences and Physical Engineering, CTU, Prague Minisymposium on fundamental aspects behind cell systems

More information

Nonlinear Single-Particle Dynamics in High Energy Accelerators

Nonlinear Single-Particle Dynamics in High Energy Accelerators Nonlinear Single-Particle Dynamics in High Energy Accelerators Part 2: Basic tools and concepts Nonlinear Single-Particle Dynamics in High Energy Accelerators This course consists of eight lectures: 1.

More information

The Brownian Oscillator

The Brownian Oscillator Chapter The Brownian Oscillator Contents.One-DimensionalDiffusioninaHarmonicPotential...38 The one-dimensional Smoluchowski equation, in case that a stationary flux-free equilibrium state p o (x) exists,

More information

Lecture 6: Multiple Model Filtering, Particle Filtering and Other Approximations

Lecture 6: Multiple Model Filtering, Particle Filtering and Other Approximations Lecture 6: Multiple Model Filtering, Particle Filtering and Other Approximations Department of Biomedical Engineering and Computational Science Aalto University April 28, 2010 Contents 1 Multiple Model

More information

NPTEL

NPTEL NPTEL Syllabus Nonequilibrium Statistical Mechanics - Video course COURSE OUTLINE Thermal fluctuations, Langevin dynamics, Brownian motion and diffusion, Fokker-Planck equations, linear response theory,

More information

A path integral approach to the Langevin equation

A path integral approach to the Langevin equation A path integral approach to the Langevin equation - Ashok Das Reference: A path integral approach to the Langevin equation, A. Das, S. Panda and J. R. L. Santos, arxiv:1411.0256 (to be published in Int.

More information

Non equilibrium thermodynamic transformations. Giovanni Jona-Lasinio

Non equilibrium thermodynamic transformations. Giovanni Jona-Lasinio Non equilibrium thermodynamic transformations Giovanni Jona-Lasinio Kyoto, July 29, 2013 1. PRELIMINARIES 2. RARE FLUCTUATIONS 3. THERMODYNAMIC TRANSFORMATIONS 1. PRELIMINARIES Over the last ten years,

More information

On the numerical integration of variational equations

On the numerical integration of variational equations On the numerical integration of variational equations Haris Skokos Max Planck Institute for the Physics of Complex Systems Dresden, Germany E-mail: hskokos@pks.mpg.de, URL: http://www.pks.mpg.de/~hskokos/

More information

Higher order weak approximations of stochastic differential equations with and without jumps

Higher order weak approximations of stochastic differential equations with and without jumps Higher order weak approximations of stochastic differential equations with and without jumps Hideyuki TANAKA Graduate School of Science and Engineering, Ritsumeikan University Rough Path Analysis and Related

More information

Efficient numerical integrators for stochastic models

Efficient numerical integrators for stochastic models Efficient numerical integrators for stochastic models G. De Fabritiis a, M. Serrano b P. Español b P.V.Coveney a a Centre for Computational Science, Department of Chemistry, University College London,

More information

Temporal Integrators for Langevin Equations with Applications to Fluctuating Hydrodynamics and Brownian Dynamics

Temporal Integrators for Langevin Equations with Applications to Fluctuating Hydrodynamics and Brownian Dynamics Temporal Integrators for Langevin Equations with Applications to Fluctuating Hydrodynamics and Brownian Dynamics by Steven Delong A dissertation submitted in partial fulfillment of the requirements for

More information

Monte Carlo Methods in Statistical Mechanics

Monte Carlo Methods in Statistical Mechanics Monte Carlo Methods in Statistical Mechanics Mario G. Del Pópolo Atomistic Simulation Centre School of Mathematics and Physics Queen s University Belfast Belfast Mario G. Del Pópolo Statistical Mechanics

More information

Onsager theory: overview

Onsager theory: overview Onsager theory: overview Pearu Peterson December 18, 2006 1 Introduction Our aim is to study matter that consists of large number of molecules. A complete mechanical description of such a system is practically

More information

Fluid Equations for Rarefied Gases

Fluid Equations for Rarefied Gases 1 Fluid Equations for Rarefied Gases Jean-Luc Thiffeault Department of Applied Physics and Applied Mathematics Columbia University http://plasma.ap.columbia.edu/~jeanluc 23 March 2001 with E. A. Spiegel

More information

Modeling of Micro-Fluidics by a Dissipative Particle Dynamics Method. Justyna Czerwinska

Modeling of Micro-Fluidics by a Dissipative Particle Dynamics Method. Justyna Czerwinska Modeling of Micro-Fluidics by a Dissipative Particle Dynamics Method Justyna Czerwinska Scales and Physical Models years Time hours Engineering Design Limit Process Design minutes Continious Mechanics

More information

Systems Driven by Alpha-Stable Noises

Systems Driven by Alpha-Stable Noises Engineering Mechanics:A Force for the 21 st Century Proceedings of the 12 th Engineering Mechanics Conference La Jolla, California, May 17-20, 1998 H. Murakami and J. E. Luco (Editors) @ASCE, Reston, VA,

More information

Lecture 21: Physical Brownian Motion II

Lecture 21: Physical Brownian Motion II Lecture 21: Physical Brownian Motion II Scribe: Ken Kamrin Department of Mathematics, MIT May 3, 25 Resources An instructie applet illustrating physical Brownian motion can be found at: http://www.phy.ntnu.edu.tw/jaa/gas2d/gas2d.html

More information

Langevin Dynamics of a Single Particle

Langevin Dynamics of a Single Particle Overview Langevin Dynamics of a Single Particle We consider a spherical particle of radius r immersed in a viscous fluid and suppose that the dynamics of the particle depend on two forces: A drag force

More information

Let's transfer our results for conditional probability for events into conditional probabilities for random variables.

Let's transfer our results for conditional probability for events into conditional probabilities for random variables. Kolmogorov/Smoluchowski equation approach to Brownian motion Tuesday, February 12, 2013 1:53 PM Readings: Gardiner, Secs. 1.2, 3.8.1, 3.8.2 Einstein Homework 1 due February 22. Conditional probability

More information

Efficient Leaping Methods for Stochastic Chemical Systems

Efficient Leaping Methods for Stochastic Chemical Systems Efficient Leaping Methods for Stochastic Chemical Systems Ioana Cipcigan Muruhan Rathinam November 18, 28 Abstract. Well stirred chemical reaction systems which involve small numbers of molecules for some

More information

Numerical integration of variational equations

Numerical integration of variational equations Numerical integration of variational equations Haris Skokos Max Planck Institute for the Physics of Complex Systems Dresden, Germany E-mail: hskokos@pks.mpg.de, URL: http://www.pks.mpg.de/~hskokos/ Enrico

More information

Ab initio molecular dynamics and nuclear quantum effects

Ab initio molecular dynamics and nuclear quantum effects Ab initio molecular dynamics and nuclear quantum effects Luca M. Ghiringhelli Fritz Haber Institute Hands on workshop density functional theory and beyond: First principles simulations of molecules and

More information

Dynamical Analysis of Complex Systems 7CCMCS04

Dynamical Analysis of Complex Systems 7CCMCS04 Dynamical Analysis of Complex Systems 7CCMCS04 A Annibale Department of Mathematics King s College London January 2011 2 Contents Introduction and Overview 7 0.1 Brownian Motion....................................

More information

STOCHASTIC PROCESSES IN PHYSICS AND CHEMISTRY

STOCHASTIC PROCESSES IN PHYSICS AND CHEMISTRY STOCHASTIC PROCESSES IN PHYSICS AND CHEMISTRY Third edition N.G. VAN KAMPEN Institute for Theoretical Physics of the University at Utrecht ELSEVIER Amsterdam Boston Heidelberg London New York Oxford Paris

More information

Kolmogorov Equations and Markov Processes

Kolmogorov Equations and Markov Processes Kolmogorov Equations and Markov Processes May 3, 013 1 Transition measures and functions Consider a stochastic process {X(t)} t 0 whose state space is a product of intervals contained in R n. We define

More information

NATIONAL UNIVERSITY OF SINGAPORE PC5215 NUMERICAL RECIPES WITH APPLICATIONS. (Semester I: AY ) Time Allowed: 2 Hours

NATIONAL UNIVERSITY OF SINGAPORE PC5215 NUMERICAL RECIPES WITH APPLICATIONS. (Semester I: AY ) Time Allowed: 2 Hours NATIONAL UNIVERSITY OF SINGAPORE PC5215 NUMERICAL RECIPES WITH APPLICATIONS (Semester I: AY 2014-15) Time Allowed: 2 Hours INSTRUCTIONS TO CANDIDATES 1. Please write your student number only. 2. This examination

More information

I. QUANTUM MONTE CARLO METHODS: INTRODUCTION AND BASICS

I. QUANTUM MONTE CARLO METHODS: INTRODUCTION AND BASICS I. QUANTUM MONTE CARLO METHODS: INTRODUCTION AND BASICS Markus Holzmann LPMMC, UJF, Grenoble, and LPTMC, UPMC, Paris markus@lptl.jussieu.fr http://www.lptl.jussieu.fr/users/markus (Dated: January 24, 2012)

More information

PROBABILITY: LIMIT THEOREMS II, SPRING HOMEWORK PROBLEMS

PROBABILITY: LIMIT THEOREMS II, SPRING HOMEWORK PROBLEMS PROBABILITY: LIMIT THEOREMS II, SPRING 218. HOMEWORK PROBLEMS PROF. YURI BAKHTIN Instructions. You are allowed to work on solutions in groups, but you are required to write up solutions on your own. Please

More information

HIGH FRICTION LIMIT OF THE KRAMERS EQUATION : THE MULTIPLE TIME SCALE APPROACH. Lydéric Bocquet

HIGH FRICTION LIMIT OF THE KRAMERS EQUATION : THE MULTIPLE TIME SCALE APPROACH. Lydéric Bocquet HIGH FRICTION LIMIT OF THE KRAMERS EQUATION : THE MULTIPLE TIME SCALE APPROACH Lydéric Bocquet arxiv:cond-mat/9605186v1 30 May 1996 Laboratoire de Physique, Ecole Normale Supérieure de Lyon (URA CNRS 1325),

More information

NATIONAL UNIVERSITY OF SINGAPORE PC5215 NUMERICAL RECIPES WITH APPLICATIONS. (Semester I: AY ) Time Allowed: 2 Hours

NATIONAL UNIVERSITY OF SINGAPORE PC5215 NUMERICAL RECIPES WITH APPLICATIONS. (Semester I: AY ) Time Allowed: 2 Hours NATIONAL UNIVERSITY OF SINGAPORE PC55 NUMERICAL RECIPES WITH APPLICATIONS (Semester I: AY 0-) Time Allowed: Hours INSTRUCTIONS TO CANDIDATES. This examination paper contains FIVE questions and comprises

More information

Active and Driven Soft Matter Lecture 3: Self-Propelled Hard Rods

Active and Driven Soft Matter Lecture 3: Self-Propelled Hard Rods A Tutorial: From Langevin equation to Active and Driven Soft Matter Lecture 3: Self-Propelled Hard Rods M. Cristina Marchetti Syracuse University Boulder School 2009 A Tutorial: From Langevin equation

More information

Treecodes for Cosmology Thomas Quinn University of Washington N-Body Shop

Treecodes for Cosmology Thomas Quinn University of Washington N-Body Shop Treecodes for Cosmology Thomas Quinn University of Washington N-Body Shop Outline Motivation Multipole Expansions Tree Algorithms Periodic Boundaries Time integration Gravitational Softening SPH Parallel

More information

Computing ergodic limits for SDEs

Computing ergodic limits for SDEs Computing ergodic limits for SDEs M.V. Tretyakov School of Mathematical Sciences, University of Nottingham, UK Talk at the workshop Stochastic numerical algorithms, multiscale modelling and high-dimensional

More information

Critique of the Fox-Lu model for Hodgkin-Huxley fluctuations in neuron ion channels

Critique of the Fox-Lu model for Hodgkin-Huxley fluctuations in neuron ion channels Critique of the Fox-Lu model for Hodgkin-Huxley fluctuations in neuron ion channels by Ronald F. Fox Smyrna, Georgia July 0, 018 Subtle is the Lord, but malicious He is not. Albert Einstein, Princeton,

More information

Week 9 Generators, duality, change of measure

Week 9 Generators, duality, change of measure Week 9 Generators, duality, change of measure Jonathan Goodman November 18, 013 1 Generators This section describes a common abstract way to describe many of the differential equations related to Markov

More information

Stochastic Particle Dynamics for Unresolved Degrees of Freedom. Sebastian Reich in collaborative work with Colin Cotter (Imperial College)

Stochastic Particle Dynamics for Unresolved Degrees of Freedom. Sebastian Reich in collaborative work with Colin Cotter (Imperial College) Stochastic Particle Dynamics for Unresolved Degrees of Freedom Sebastian Reich in collaborative work with Colin Cotter (Imperial College) 1. The Motivation Classical molecular dynamics (MD) as well as

More information

Dominant Paths in Protein Folding

Dominant Paths in Protein Folding Dominant Paths in Protein Folding Henri Orland SPhT, CEA-Saclay France work in collaboration with P. Faccioli, F. Pederiva, M. Sega University of Trento Henri Orland Annecy meeting 2006 Outline Basic notions

More information

Advanced Quantum Mechanics

Advanced Quantum Mechanics Advanced Quantum Mechanics Rajdeep Sensarma! sensarma@theory.tifr.res.in Lecture #22 Path Integrals and QM Recap of Last Class Statistical Mechanics and path integrals in imaginary time Imaginary time

More information

Active Matter Lectures for the 2011 ICTP School on Mathematics and Physics of Soft and Biological Matter Lecture 3: Hydrodynamics of SP Hard Rods

Active Matter Lectures for the 2011 ICTP School on Mathematics and Physics of Soft and Biological Matter Lecture 3: Hydrodynamics of SP Hard Rods Active Matter Lectures for the 2011 ICTP School on Mathematics and Physics of Soft and Biological Matter Lecture 3: of SP Hard Rods M. Cristina Marchetti Syracuse University Baskaran & MCM, PRE 77 (2008);

More information

Symplectic integration. Yichao Jing

Symplectic integration. Yichao Jing Yichao Jing Hamiltonian & symplecticness Outline Numerical integrator and symplectic integration Application to accelerator beam dynamics Accuracy and integration order Hamiltonian dynamics In accelerator,

More information

Statistical Thermodynamics and Monte-Carlo Evgenii B. Rudnyi and Jan G. Korvink IMTEK Albert Ludwig University Freiburg, Germany

Statistical Thermodynamics and Monte-Carlo Evgenii B. Rudnyi and Jan G. Korvink IMTEK Albert Ludwig University Freiburg, Germany Statistical Thermodynamics and Monte-Carlo Evgenii B. Rudnyi and Jan G. Korvink IMTEK Albert Ludwig University Freiburg, Germany Preliminaries Learning Goals From Micro to Macro Statistical Mechanics (Statistical

More information