Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy

Size: px
Start display at page:

Download "Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy"

Transcription

1 Spectrochimica Acta Part A 72 (2009) Contents lists available at ScienceDirect Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy journal homepage: IR spectroscopy investigation using DFT analysis on the structure of P 1 phosphorus dendrimer built from octasubstituted metal-free phthalocyanine core V.L. Furer a,, I.I. Vandyukova b, A. Pla-Quintana c, J.P. Majoral c, A.M. Caminade c, V.I. Kovalenko b, a Kazan State Architect and Civil Engineering University, Zelenaya 1, Kazan , Russia b A.E. Arbuzov Institute of Organic and Physical Chemistry, Russian Academy of Science, Arbuzov Str. 8, Kazan, Russia c Laboratorie de Chimie de Coordination, CNRS, 205 route de Narbonne, Toulouse Cedex 4, France article info abstract Article history: Received 11 September 2008 Received in revised form 5 November 2008 Accepted 5 November 2008 Keywords: Phosphorus-containing dendrimers IR spectra Normal vibrations DFT The IR spectra of P 1 phosphorus dendrimer built from an octasubstituted metal-free phthalocyanine core have been recorded in the region cm 1. Besides the phthalocyanine core, P 1 possess also eight C 6 H 4 CH N N(CH 3 ) P(S) arms and terminal P Cl groups. The optimized molecular geometry, frequency and intensity of the IR bands have been calculated using density functional theory (DFT). The P 1 molecules exist in a stable conformation with planar C 6 H 4 CH N N(CH 3 ) fragments and phthalocyanine core. The calculated geometrical parameters and harmonic vibrational frequencies are predicted in a good agreement with the experimental data. The experimental IR spectrum of P 1 dendrimer was interpreted by means of potential energy distributions. Relying on DFT calculations a complete vibrational assignment is proposed. The difference IR spectra of molecules built from the thiophosphoryl, cyclotriphosphazene, and phthalocyanine cores with the same repeated units and terminal groups were studied in order to undermine the role of the core functionality on the dendrimer architecture Elsevier B.V. All rights reserved. 1. Introduction Dendrimers are highly branched monodisperse macromolecular compounds [1 3]. The three structural components of dendrimers, namely an interior core, repeating branching units, radially attached to the core, and functional terminal groups can be tuned at will [2]. The concept of site isolation of the active core, leading to enhanced photo-physical properties was developed [3]. To yield a better understanding of the effect imparted by each component to the whole structure and the influence of each part on the others, it is highly desirable to introduce the density functional theory (DFT) studies of dendrimers. The preparation, IR and Raman spectra of phosphorus dendrimers with thiophosphoryl core built up to 12th generation with terminal aldehyde and P Cl groups were described [4,5]. The properties of dendrimers are closely related to the nature of the core [1 3]. A core, offering more functional groups gives a higher number of peripheral units for an equal number of synthetic steps [1 3]. The phosphorus-containing dendrimers built from the trifunctional, hexafunctional, and octafunctional cores with identi- Corresponding author. Tel.: ; fax: Corresponding author. Tel.: ; fax: addresses: furer@ksaba.ru (V.L. Furer), koval@iopc.knc.ru (V.I. Kovalenko). cal repeating units and terminal groups were prepared [4]. Thus a fine control of the overall size, shape, and container properties of dendrimers can be achieved [4]. Dendrimers with phthalocyanine core gave an opportunity to study a large variety of photo- and physico-chemical properties [6,7]. The isolation of the phthalocyanine core in dendrimers prevents their stacking, increase solubility [6,7]. It is important for application of phthalocyanines in photodynamic therapy, because aggregation induces a significant decrease in the photosensitising efficiency [6,7]. In this paper we report the IR spectra study combined with DFT calculations of P 1 which is the first generation phosphorus dendrimer built from an octasubstituted metal-free phthalocyanine core with P Cl terminal groups [6]. This work is an extension of the spectroscopic and quantum chemical studies concerning the structure and reactivity of phosphorus dendrimers [5]. The optimized structure parameters of the P 1 molecule and its IR spectra were obtained using DFT techniques. The values of calculated geometric parameters were compared with precise molecular structure derived by the X-ray analysis [6]. Thus the main aim of this work was to obtain the characteristic spectral features of structural parts of dendrimer: a phthalocyanine core, repeating units and terminal P Cl groups based on DFT quantum chemical analysis. The difference IR spectra of molecules built from the trifunctional thiophosphoryl, hexafunctional cyclotriphosphazene, /$ see front matter 2008 Elsevier B.V. All rights reserved. doi: /j.saa

2 V.L. Furer et al. / Spectrochimica Acta Part A 72 (2009) Fig. 1. Structure of P 1, G c1 and G 1 molecules.

3 638 V.L. Furer et al. / Spectrochimica Acta Part A 72 (2009) The synthesis and main characteristics of the studied phosphorus dendrimer were described earlier [4,6]. The molecular structure of the P 1 is the following: the octafunctional phthalocyanine core (P c ), the bifunctional repeating unit O C 6 H 4 CH N N(CH 3 ) P(S) and the chlorine atoms as the terminal groups (Fig. 1). The analogous molecules built from the trifunctional thiophosphoryl core S P( O ) 3 (G 1 ), the hexafunctional cyclotriphosphazene (NP) 3 core (G c1 ) and the same repeating units and terminal groups were studied in order to undermine the role of the core functionality on the dendrimer architecture (Fig. 1). IR spectra in the region cm 1 have been recorded with a Vector 22 Bruker FTIR spectrometer. The IR spectra of the solid samples were registered in KBr pellets. The spectral resolution was set at 4 cm 1. Sixty-four scans were added for each spectrum. 3. Computational method Fig. 2. The free base and dianionic forms of P 1. and octafunctional phthalocyanine cores with the same repeating units and terminal groups were studied in order to undermine the role of the core functionality on the dendrimer architecture. Analysis of IR spectra of dendrimers combined with DFT calculations is important for investigation of supramolecular properties of phosphorus-containing dendrimers as containers for different guest molecules. The calculation of electronic density spatial distribution reveals the existence of regions where appropriate environments would attract either ion or a metal atom. The interpretation of IR spectra of non-crystalline dendrimers is important for characterization their structure. The results that emerge from such an analysis contribute to the understanding of the structure, dynamics and properties of dendrimers. 2. Experimental Table 1 Experimental and calculated bond distances (Å) and bond angles ( )ofp 1. Calculations of IR spectra of dendrimer P 1 were carried out using the gradient-correlated density functional theory with Perdew Burke Ernzerhof exchange-correlation functional (DFT/PBE) [8]. This functional is very satisfactory from the theoretical point of view because it does not contain any fitting parameters [9]. The binding energies, geometries and dynamical properties of different molecules calculated with PBE functional show the best agreement with experiment [10,11]. Calculations were performed using three exponential basis with two polarising functions (TZ2P) [12]. This basis set was chosen in order to obtain the most advantageous relation of accuracy and computation time [12]. The program PRIRODA was used to perform DFT calculations [12]. All stationary points were characterised as minima by analysis of Hessian matrices. The software package SHRINK was used for transformation of quantum mechanical Cartesian force constants to the matrix in redundant internal coordinates and calculation of potential energy distribution [13]. No scaling procedure of frequencies or force constants was applied. Recently, we checked the selected functional and basis set by calculation of geometry and IR spectra of dendrimers [14] Experimental [16,17] Calculated Experimental [16,17] Calculated Bond distances C(1) C(2) C(2) C(4) C(30) O(1) C(9) N(4) C(33) O(1) C(4) N(1) C(33) C(34) C(2) C(6) C(38) C(39) C(39) N(9) N(9) N(10) P(1) N(10) P(1) S(1) C(40) N(10) P(1) Cl(1) C(39) N(9) Angles C(1) C(3) C(5) N(1) C(4) N(2) C(1) C(3) O(3) C(4) N(1) C(9) C(3) O(3) C(49) C(4) N(2) C(8) C(33) C(34) C(35) C(2) C(4) N(2) C(38) C(39) N(9) C(39) N(9) N(10) N(9) N(10) C(40) N(9) N(10) P(1) N(10) P(1) S(1) N(10) P(1) Cl(1) N(10) P(1) Cl(2) S(1) P(1) Cl(1) S(1) P(1) Cl(2) Dihedral angles C(28) C(30) O(1) C(33) C(30) O(1) C(33) C(34) C(30) C(32) O(2) C(39) C(32) O(2) C(39) C(41) C(1) C(2) C(6) C(7) C(36) C(37) C(38) C(39) C(1) C(2) C(6) C(8) C(2) C(6) C(8) N(2) C(2) C(6) C(8) N(3) C(4) N(2) C(8) N(3) C(4) N(2) C(8) C(6) N(2) C(4) N(1) C(9) C(4) N(1) C(9) N(4) C(38) C(39) N(9) N(10) C(39) N(9) N(10) C(40) C(39) N(9) N(10) P(1) N(9) N(10) P(1) S(1) N(9) N(10) P(1) Cl(1) N(9) N(10) P(1) Cl(2)

4 V.L. Furer et al. / Spectrochimica Acta Part A 72 (2009) Fig. 3. Optimized geometry and atom numbering for the free base form of P 1. The minima of the potential surface were found by relaxing the geometric parameters with standard optimization methods. IR spectra were generated from a list of frequencies and intensities using Gaussian band shape and half-width of 10 cm 1 for each of N vibration modes calculated. The intensity of each band is A k in km/mol. I(v) = N { A k exp (v v } 0) k of phthalocyanine [17]. It was shown that most of phthalocyanine derivatives have planar conformation [17]. The calculated bond distances and bond angles correspond well to the experimental values (Table 1). An assignment of bands was fulfilled on the basis of calculated potential energy distribution (PED). 4. Results and discussion The X-ray diffraction experimental data of P 1 are absent. But we can use the geometric parameters of G 1 dendrimer and phthalocyanine [15,16]. The X-ray data for the G 1 dendrimer built from a trifunctional core show that molecule as a whole looks like a threeblade propeller when examined in the direction of P S group of the core and each O C 6 H 4 CH N N(CH 3 ) arm is planar [16]. To have a deeper insight on the acido/basicity properties of the phthalocyanine ring the liability of core hydrogens was studied. The four pyrrole nitrogen atoms can theoretically undergo protonation/deprotonation reactions (Fig. 2) which modify the symmetry of the phthalocyanine ring and affect particularly UV vis spectra [6]. The results of full geometry optimisation of the free base and dianionic forms of P 1 molecule are presented (Table 1). Although the comparison between gas phase and condensed phase structures is not direct, we can observe a reasonable agreement between theoretical calculations of the free base form of P 1 and experimental X-ray diffraction data [15,16] (Table 1). Full optimization yielded the conformer of P 1 with planar phthalocyanine ring (Fig. 3). The calculated dihedral angles of phthalocyanine ring are less than 4. Our data correspond to recent ab initio calculations Fig. 4. Theoretical of the free base (1) and dianionic forms (2) and experimental (3) IR spectrum of P 1.

5 640 V.L. Furer et al. / Spectrochimica Acta Part A 72 (2009) From DFT calculations it follows that each O C 6 H 4 CH N N (CH 3 ) arm is planar. Thus, the molecular conformation is defined by the dihedral angles C(28) C(30) O(1) C(33) and C(30) C(32) O(2) C(41) which determine the orientation of the arms (Fig. 3). As it follows from the X-ray data the experimental dihedral angles C(28) C(30) O(1) C(33) and C(30) C(32) O(2) C(41) are equal to 64.2 and Full optimization of free base form yielded the conformer with dihedral angles and The experimental dihedral angles C(30) O(1) C(33) C(36) and C(32) O(2) C(41) C(42) are equal to and and correspond to calculated for the free base form values and Thus as it follows from the theoretical data of P 1 O C 6 H 4 CH N N(CH 3 ) P(S) arms are not coplanar with phthalocyanine core. The calculated bond distances and angles of the dianionic and free base forms of P 1 show little difference and correspond well to the experimental values. The conformations of O C 6 H 4 CH N N(CH 3 ) P(S) arms are slightly different for theoretical structures of the dianionic and free base forms of P 1. The calculated value of dihedral angle N(2) C(4) N(1) C(9) for free base form better corresponds to the experimental data thus this form is observed at room temperature. The repeating units of P 1 dendrimer are oriented out of the phthalocyanine core plane due to steric reasons. This imposes an isolation of the phthalocyanine core and the dendrite shell mimics a highly polar solvent. Our results are consistent with experimental data that the first generation of dendrimer is much more soluble than the zero generation. This means that the known tendency of phthalocyanines to stack, which causes their insolubility, is largely diminished, even for the first generation. The dendrimer shape can be characterized by ratios I 1 /I 3 and I 2 /I 3 of principal moments of gyration tensor. The difference of these ratios from 1 characterizes the deviation of dendrimer shape from the sphere. For the studied dendrimers the calculated values of ratios I 1 /I 3 and I 2 /I 3 of principal moments of gyration tensor are and (G 1 ), and (G c1 ), and (P 1 ). Thus all the studied phosphorus-containing dendrimers of the first generations have highly asymmetric shape and possess open structures. In order to evaluate the interactions between dendrimers and various active substances, such as drugs, pesticides, and perfumes, we calculated electronic density spatial distribution for the core and terminal groups. From our calculations it follows that the studied phosphorus-containing dendrimers incorporate C N polar bonds in the phthalocyanine core with Hirshfeld charges (in a.u.) on atoms [18]: N(1) 0.14, N(2) 0.03, N(4) 0.16 and C(4) The oxygen atoms of the repeated unit also have negative charges The S and P atoms of the S PCl 2 terminal group have values of charges 0.19 and +0.30, respectively. Thus the molecules of phosphoruscontaining dendrimers have a hydrophobic interior. Dipole moments may be used for characterization of dendrimer structure [16]. Recently it was shown that the experimental dipole moments of dendrimers built from thiophosphoryl core and P Cl terminal groups increase from 8.43 D (G 1 )to258d(g 10 ), the highest dipole moment values reported up to now for dendrite structures Table 2 Experimental and corresponded calculated frequencies (cm 1 ) and intensity I (km/mol) of bands in the IR spectra of P 1 in the region cm 1. Experiment Calculation Assignment a Free base form Dianionic form PED I I (CC ar), 11 (CCH), 9 (CN) (CCH), 30 (CC ar), 9 (CC) (CC ar), 17 (CO), 8 (CN) (CC ar), 21 (CC pyr), 8 (CN) (CC ar), 32 (CCH) (CC ar), 22 (CN), 10 (CC pyr) (CN), 6 (CCC), 5 (CCH) (CN), 12 (CC pyr), 8 (NCN) (CO), 20 (CC ar), 19 (CCH) (CC ar), 19 (CC pir ), 18 (CO) (CO), 16 (CCH), 7 (CCH) (CN), 14 (CO), 15 (CC ar) (CN), 12 (CC pir ), 6 (CNC) (CC pyr), 16 (CCH), 15 (CN) (CO), 15 (CCH), 14 (CC ar) (NCH), 7 (HCH) (CN), 16 (CO), 10 (CC pyr) (CN), 16 (CO), 13 (CC pyr) (PO) (NN), 20 (PN), 14 (CNH) (CH), 18 (CC ar), 5 (CNN) (CC ar), 18 (CH), 9 (CCH) (CH), 5 (CC) (CH), 6 (CC ar), 6 (CO) (CNC), 16 (CN), 14 (NCN) (OCC), 14 (CO), 14 (CC pyr) (CH), 33 (CC) (CN), 27 (CC), 12 (CH) (OCC), 26 (CCC), 10 (CCN) (CCC), 12 (OCC), 4 (CCH) (CN), 24 (CC), 11 (CCC) (CCC), 10 (COC) (PCl), 5 (NPCl), 4 (SPCl) (PCl), 6 (NPCl), 4 (SPCl) (CC), 13 (OCC), 7 (CH) (CC), 27 (CN), 7 (PN) a, stretch;, in-plane-bend;, out-of-plane bend;, torsion.

6 V.L. Furer et al. / Spectrochimica Acta Part A 72 (2009) Fig. 5. The difference IR spectra P 1 G 1 (3) and IR spectra of G 1 (1) and P 1 (2). Fig. 6. The difference IR spectra P 1 G c1 (3) and IR spectra of G c1 (1) and P 1 (2). [16]. The calculated in gas phase dipole moment 5.8 D for the free base form of P 1 increases to 9.0 D for the dianionic form. Thus the P 1 dendrimer has the significant dipole moment. An increase of the local polarity induced by the arylhydrazone branches lead to the progressive protection of the phthalocyanine core for higher generations of dendrimer [6,7]. The band at 3250 cm 1 in the IR spectra, corresponding to the stretching of pyrrole NH bonds, is observed. Thus P 1 dendrimer at room temperature exists in the free base form. We calculated the IR spectra of P 1 containing the free base and dianionic forms of phthalocyanine core (Fig. 4, Table 2). The theoretical spectra of the free base and dianionic forms of P 1 are similar to each other (Fig. 4). The phthalocyanine core reveals itself by bands at 877, 1015, 1086, 1274 and 1440 cm 1 in the IR spectra of P 1. The repeating units show bands at 1601, 1503 cm 1 of (CC) ar stretch and 954 cm 1 assigned to P O stretch. The terminal groups are characterized by the well-defined bands at 495 and 527 cm 1 in the experimental IR spectra of P 1 assigned to the P Cl stretching vibrations. It is interesting to compare the IR spectra of P 1, G c1 and G 1 dendrimers built from phthalocyanine, cyclotriphosphazene and thiophosphoryl cores. The characteristic features of the studied IR spectra of P 1, G c1 and G 1 dendrimers are their similarity to each other (Figs. 5 and 6). The frequencies of most bands in the IR spectra of P 1, G c1 and G 1 dendrimers are just the same only changes of intensity of some bands occur. In order to clear up these changes the difference IR spectra of dendrimers were studied (Figs. 5 and 6). A dendrimer molecule consists of three types of units: initiator-core (C), repeating unit (R) and terminal group (T). A fine control of dendrimer structure enables one to assign bands in the IR spectra to the specific molecular fragments. A clear example of the above opportunity is given when in the difference spectra of dendrimer built from phthalocyanine and thiophosphoryl cores P 1 G 1 compensation is made by band of terminal group. The result of subtraction will be the difference spectra in which by one side of zero line will be situated the bands of phthalocyanine core (C 8 ), and on the other side the bands of the thiophosphoryl core (C 3 ). Such spectral additivity appears from the equations: C 8 = 1, R 1 = 8, T 1 = 16 (P 1 ). C 3 = 1, R 1 = 3, T 1 = 6(G 1 ). Then the subtraction G 1 from P 1 looks like: C 8 + 8R + 16T 8/3(C 3 + 3R + 6T) = C 8 8/3C 3. Thus, in difference spectra on side of P 1 the bands of the phthalocyanine core (C 8 ) and on the side of G 1 the bands of the thiophosphoryl core (C 3 ) with intensity, multiplied by factor 8/3 must be observed. Another example of the above opportunity is given when in the difference spectra of dendrimer built from phthalocyanine and cyclotriphosphazene cores P 1 G c1 compensation is made by band of terminal group. The subtraction G c1 from P 1 looks like: C 8 + 8R + 16T 4/3(C 6 + 6R + 12T) = C 8 4/3C 6. Thus, in difference spectra on side of P 1 the bands of the phthalocyanine core (C 8 ) and on the side of G c1 the bands of the cyclotriphosphazene core (C 6 ) with intensity, multiplied by factor 4/3 must be observed. In practice experimental IR spectra may not obey such simple and ideal arithmetic. Any differences in spectra must be connected with the changes of the environment of these fragments, variation of the conformational and crystalline state, modification of the intra- and intermolecular interactions and so on. The analysis of the difference IR spectra P 1 G 1, P 1 G c1 enables one to distinguish the bands of the phthalocyanine, thiophosphoryl and cyclotriphosphazene cores (Figs. 4 and 5). For example, in the difference IR spectra P 1 G 1 bands near 495, 527, 692, 748, 1218 and 1504 cm 1 show characteristic EPR-like character. The bands on side P 1 of the zero line in the difference IR spectra P 1 G 1 at 711, 748, 877, 1015, 1086, 1274 and 1440 cm 1 are connected with vibrations of the phthalocyanine core. The bands on side G 1 of the zero line in the difference IR spectra P 1 G 1 at 693, 782, 925 cm 1 are assigned to vibrations of the thiophosphoryl core. The bands on

7 642 V.L. Furer et al. / Spectrochimica Acta Part A 72 (2009) side G c1 of the zero line in the difference IR spectra P 1 G c1 at 691, 776, 878, 891, 1121, 1156, 1176 cm 1 are assigned to vibrations of the cyclotriphosphazene core. One may take into consideration, that in the real difference spectra the intensity of the bands of the core will be very small, and the significant part of the bands of repeating units and terminal groups is subtracted from each other. Thus it follows that the fine effects, connected with the distinction of the structure of P 1, G 1 and G c1 molecules (small shifts of bands, which are not displayed in ordinary spectra), will be clearly seen in the difference spectra. For example, the frequency of P O stretch band at 954 cm 1 in the experimental IR spectra of P 1 is computed at 935 cm 1 for free base form. In the IR spectra of G 1 dendrimer, with thiophosphoryl core, this band is shifted to 925 cm 1. Such shift is clearly observed in the difference IR spectra. The characteristic feature of IR and Raman spectra of the generations G 1 G 10 is their similarity to each other [5]. The band half-width and intensity show very little changes for the first four generations and then achieve saturation. The saturation of the band intensity is observed because the ratio of the repeating units and end groups tends to one when the generation numbers increase and reflects strong homogeneity of the dendrimer macromolecules. Thus some structural features of the first generation dendrimer built from phthalocyanine core obtained in this study are contained for the higher generations of dendrimers and define their properties. 5. Summary Experimental and computational studies of spectroscopic properties of dendritic phthalocyanines provide interesting insights into the structure of the phthalocyanine core and dendritic branches. The agreement between the experimental and calculated IR spectra, in terms of both frequencies and intensities is very satisfactory. The theoretical values of ratios of principal moments of gyration tensor reveal that all studied phosphorus-containing dendrimers of the first generations have highly asymmetric shape and possess open structures. The free base form of the first-generation dendrimer with a metal-free octasubstituted phthalocyanine is observed at room temperature in the FTIR experiment in accordance with DFT study. Acknowledgements Authors are grateful to Department of Chemistry and Materials Science of Russian Academy of Science for financial support (Program 7). We are also grateful to supercomputer center of collective use of Kazan Scientific Center RAS for access to computer resources. References [1] G.R. Newkome, C.N. Moorefield, F. Vogtle, Dendrimers and Dendrons: Concepts, Syntheses, Applications, VCH, Weinheim, [2] J.M.J. Frechet, D.A. Tomalia, Dendrimers and Other Dendritic Polymers, Wiley, New York, [3] S. Hecht, J.M.J. Frechet, J. Angew. Chem., Int. Ed. 40 (2001) 74. [4] J.P. Majoral, A.M. Caminade, V. Maraval, Chem. Commun. (2002) [5] V.I. Kovalenko, V.L. Furer, A.E. Vandyukov, R.R. Shagidullin, J.P. Majoral, A.M. Caminade, J. Mol. Struct. 604 (2002) 45. [6] J. Leclaire, R. Gagiral, S. Fery-Forgues, Y. Coppel, B. Donnadieu, A.M. Caminade, J.P. Majoral, J. Am. Chem. Soc. 127 (2005) [7] J. Leclaire, R. Gagiral, A. Pla-Quintana, A.M. Caminade, J.P. Majoral, Eur. J. Inorg. Chem. Soc (2007) [8] C. Lin, K. Wu, R. Sa, C. Mang, P. Liu, B. Zhuang, Chem. Phys. Lett. 363 (2002) 343. [9] J.P. Perdew, K. Burke, M. Erznzerhof, Phys. Rev. Lett. 77 (1996) [10] M. Erznzerhof, G.E. Scuseria, J. Chem. Phys. 110 (1999) [11] C. Adamo, V. Barone, J. Chem. Phys. 110 (1999) [12] D.N. Laikov, Yu.A. Ustynyuk, Russ. Chem. Bull., Int. Ed. 54 (2005) 821. [13] V.A. Sipachev, J. Mol. Struct. (Theochem.) 121 (1985) 143. [14] V.L. Furer, A.E. Vandyukov, J.P. Majoral, A.M. Caminade, V.I. Kovalenko, J. Mol. Struct. 785 (2006) 153. [15] S. Matsumoto, K. Matsuhama, J. Mizuguchi, Acta Cryst. C 55 (1999) 131. [16] M.L. Lartigue, B. Donnadieu, C. Galliot, A.M. Caminade, J.P. Majoral, Macromolecules 30 (1997) [17] A.B.J. Parusel, S. Grimme, J. Porphyrins Phthalocyanines 5 (2001) 1. [18] F.L. Hirshfeld, Theor. Chim. Acc. 44 (1977) 129.

Interligand charge transfer in a complex of deprotonated cis-indigo dianions and tin(ii) phthalocyanine radical anions with Cp*Ir(III).

Interligand charge transfer in a complex of deprotonated cis-indigo dianions and tin(ii) phthalocyanine radical anions with Cp*Ir(III). Interligand charge transfer in a complex of deprotonated cisindigo dianions and tin(ii) phthalocyanine radical anions with Cp*Ir(III). Dmitri V. Konarev,*, Leokadiya V. Zorina, Salavat S. Khasanov, Alexander

More information

AB INITIO MODELING OF THE STRUCTURAL DEFECTS IN AMIDES

AB INITIO MODELING OF THE STRUCTURAL DEFECTS IN AMIDES Int. J. Chem. Sci.: 9(4), 2011, 1564-1568 ISSN 0972-768X www.sadgurupublications.com AB INITIO MODELING OF THE STRUCTURAL DEFECTS IN AMIDES M. FATHIMA BEGUM, HEMA TRESA VARGHESE a, Y. SHEENA MARY a, C.

More information

Geometry, Vibration Frequencies, Normal Coordinates and IR Absorption Intensities of [6]-Radialene

Geometry, Vibration Frequencies, Normal Coordinates and IR Absorption Intensities of [6]-Radialene Geometry, Vibration Frequencies, Normal Coordinates and IR Absorption Intensities of [6]-Radialene Rehab M. Kubba, S. H. Rida, and A. H. Hanoon Department of Chemistry, College of Science, University of

More information

CHAPTER-IV. FT-IR and FT-Raman investigation on m-xylol using ab-initio HF and DFT calculations

CHAPTER-IV. FT-IR and FT-Raman investigation on m-xylol using ab-initio HF and DFT calculations 4.1. Introduction CHAPTER-IV FT-IR and FT-Raman investigation on m-xylol using ab-initio HF and DFT calculations m-xylol is a material for thermally stable aramid fibers or alkyd resins [1]. In recent

More information

Quantum chemical studies on the structures of some heterocyclic azo disperse dyes

Quantum chemical studies on the structures of some heterocyclic azo disperse dyes Quantum chemical studies on the structures of some heterocyclic azo disperse dyes Nesrin Tokay, a* Zeynel Seferoğlu, b Cemil Öğretir, c and Nermin Ertan b a Hacettepe University, Faculty of Science, Chemistry

More information

J.Phys. & Theo.Chem.I.A.U. Iran M.Monajjemi et al. Vol.4, No.1, Spring 2007

J.Phys. & Theo.Chem.I.A.U. Iran M.Monajjemi et al. Vol.4, No.1, Spring 2007 Journal of Physical & Theoretical Chemistry Islamic Azad University of Iran 4 (1) (27) Science and Research Campus ISSN: 1735-2126 AB Initio Calculations and IR Studies of Tautometric forms of Uracil and

More information

FTIR, FT-Raman spectral analysis and normal coordinate calculations of 2-hydroxy-3-methoxybenzaldehyde thiosemicarbozone

FTIR, FT-Raman spectral analysis and normal coordinate calculations of 2-hydroxy-3-methoxybenzaldehyde thiosemicarbozone Indian Journal of Pure & Applied Physics Vol. 42, May 2004, pp 313-318 FTIR, FT-Raman spectral analysis and normal coordinate calculations of 2-hydroxy-3-methoxybenzaldehyde thiosemicarbozone V Krishnakumar

More information

Vibrational Spectroscopy

Vibrational Spectroscopy Vibrational Spectroscopy 65 (2013) 147 158 Contents lists available at SciVerse ScienceDirect Vibrational Spectroscopy j ourna l h o me page: www.elsevier.com/locate/vibspec The FTIR spectra of substituted

More information

Supporting Information. for. Angew. Chem. Int. Ed. Z Wiley-VCH 2003

Supporting Information. for. Angew. Chem. Int. Ed. Z Wiley-VCH 2003 Supporting Information for Angew. Chem. Int. Ed. Z52074 Wiley-VCH 2003 69451 Weinheim, Germany Kinetic and Thermodynamic Control via Chemical Bond Rearrangement on Si(001) Surface Chiho Hamai, Akihiko

More information

STRUCTURAL DEFECTS IN IMIDATES : AN AB INITIO STUDY

STRUCTURAL DEFECTS IN IMIDATES : AN AB INITIO STUDY Int. J. Chem. Sci.: 9(4), 2011, 1763-1767 ISSN 0972-768X www.sadgurupublications.com STRUCTURAL DEFECTS IN IMIDATES : AN AB INITIO STUDY M. FATHIMA BEGUM, HEMA TRESA VARGHESE a, Y. SHEENA MARY a, C. YOHANNAN

More information

Supporting Information

Supporting Information Supporting Information Three Polymorphic Forms of Ciprofloxacin Maleate: Formation Pathways, Crystal Structures, Calculations and Thermodynamic Stability Aspects Artem O. Surov a, Andrei V. Churakov b,

More information

Raman spectroscopy of phthalocyanines and their sulfonated derivatives

Raman spectroscopy of phthalocyanines and their sulfonated derivatives Journal of Molecular Structure 744 747 (2005) 481 485 www.elsevier.com/locate/molstruc Raman spectroscopy of phthalocyanines and their sulfonated derivatives B. Brożek-Płuska*, I. Szymczyk, H. Abramczyk

More information

CHAPTER 8 REPORT ON HIGHER SHG EFFICIENCY IN BIS (CINNAMIC ACID): HEXAMINE COCRYSTAL

CHAPTER 8 REPORT ON HIGHER SHG EFFICIENCY IN BIS (CINNAMIC ACID): HEXAMINE COCRYSTAL CHAPTER 8 REPORT ON HIGHER SHG EFFICIENCY IN BIS (CINNAMIC ACID): HEXAMINE COCRYSTAL 8.1. Introduction In recent times higher Second Harmonic Generation (SHG) efficiency organic materials receive great

More information

Effect of the Inner-Zone Vibrations on the Dynamics of Collision-Induced Intramolecular Energy Flow in Highly Excited Toluene

Effect of the Inner-Zone Vibrations on the Dynamics of Collision-Induced Intramolecular Energy Flow in Highly Excited Toluene Notes Bull. Korean Chem. Soc. 2005, Vol. 26, No. 8 1269 Effect of the Inner-Zone Vibrations on the Dynamics of Collision-Induced Intramolecular Energy Flow in Highly Excited Toluene Jongbaik Ree, * Yoo

More information

Molecule Matters. Dendritic Architecture A Clever Route to Monodispersed Macromolecules. N Jayaraman

Molecule Matters. Dendritic Architecture A Clever Route to Monodispersed Macromolecules. N Jayaraman Molecule Matters Dendritic Architecture A Clever Route to Monodispersed Macromolecules Jayaraman Dendritic macromolecules are excellent examples for macromolecules that possess well-defined branching that

More information

PAPER No.12 :Organic Spectroscopy MODULE No.30: Combined problem on UV, IR, 1 H NMR, 13 C NMR and Mass - Part II

PAPER No.12 :Organic Spectroscopy MODULE No.30: Combined problem on UV, IR, 1 H NMR, 13 C NMR and Mass - Part II Subject Chemistry Paper No and Title Module No and Title Module Tag 12 : rganic Spectroscopy 30: Combined problem on UV, IR, 1 H NMR, 13 C NMR and Mass Part-II CHE_P12_M30 TABLE F CNTENTS 1. Learning utcomes

More information

NITRATE. HOWRAH (West Bengal) INDIA e Thushara, Neethinagar-64, Pattathanam, KOLLAM (Kerala) INDIA ABSTRACT

NITRATE. HOWRAH (West Bengal) INDIA e Thushara, Neethinagar-64, Pattathanam, KOLLAM (Kerala) INDIA ABSTRACT Int. J. Chem. Sci.: 8(1), 2010, 176-182 SPECTROSCOIC INVESTIGATIONS OF ANILINIUM NITRATE C. YOHANNAN PANICKER *, HEMA TRESA VARGHESE a, P. E. EAPEN b, K. RAJU c, SUBARNA GANGULI d, FATHIMA BEEGUM and Y.

More information

VCD SPECTROSCOPIC STUDIES ON INTERMOLECULAR INTERACTIONS:

VCD SPECTROSCOPIC STUDIES ON INTERMOLECULAR INTERACTIONS: VCD SPECTRSCPIC STUDIES N INTERMLECULAR INTERACTINS: LEARNING THE BASICS FRM NBLE GAS MATRICES DR. CHRISTIAN MERTEN RGANIC CHEMISTRY II, RUHR-UNIVERSITY BCHUM BRUKER-ANWENDERTREFFEN, ETTLINGEN, 11.11.2014

More information

Chapter 6 Cyclic urea - a new central unit in bent-core compounds

Chapter 6 Cyclic urea - a new central unit in bent-core compounds 82 Chapter 6 Cyclic urea - a new central unit in bent-core compounds A new class of five-ring bent-core molecules with a cyclic urea group as a central unit was synthesized [94]. A significant difference

More information

Name: Period: Date: UNIT 12: Solutions Lesson 2: Electronegativity and Polarity!

Name: Period: Date: UNIT 12: Solutions Lesson 2: Electronegativity and Polarity! Name: Period: Date: UNIT 12: Solutions Lesson 2: Electronegativity and Polarity! By the end of today, you will have an answer to: What is electronegativity and how does it lead to molecules being polar

More information

THE VIBRATIONAL SPECTRUM OF A POLYATOMIC MOLECULE (Revised 4/7/2004)

THE VIBRATIONAL SPECTRUM OF A POLYATOMIC MOLECULE (Revised 4/7/2004) INTRODUCTION THE VIBRATIONAL SPECTRUM OF A POLYATOMIC MOLECULE (Revised 4/7/2004) The vibrational motion of a molecule is quantized and the resulting energy level spacings give rise to transitions in the

More information

Infra-red Spectroscopy

Infra-red Spectroscopy Molecular vibrations are associated with the absorption of energy (infrared activity) by the molecule as sets of atoms (molecular moieties) vibrate about the mean center of their chemical bonds. Infra-red

More information

CHAPTER INTRODUCTION

CHAPTER INTRODUCTION CHAPTER 3 A SCALED QUANTUM MECHANICAL APPROACH OF VIBRATIONAL ANALYSIS OF O-TOLUNITRILE BASED ON FTIR AND FT RAMAN SPECTRA, AB INITIO, HARTREE FOCK AND DFT METHODS 3.1. INTRODUCTION o-tolunitrile or ortho

More information

The wavefunction that describes a bonding pair of electrons:

The wavefunction that describes a bonding pair of electrons: 4.2. Molecular Properties from VB Theory a) Bonding and Bond distances The wavefunction that describes a bonding pair of electrons: Ψ b = a(h 1 ) + b(h 2 ) where h 1 and h 2 are HAOs on adjacent atoms

More information

Supplementary Information

Supplementary Information Supplementary Information Supplementary Figure 1. Photographs show the titration experiments by dropwise adding ~5 times number of moles of (a) LiOH and LiOH+H 2 O, (b) H 2 O 2 and H 2 O 2 +LiOH, (c) Li

More information

Vibrational spectra and normal coordinate analysis on an organic non-linear optical crystal-3-methoxy-4-hydroxy benzaldehyde

Vibrational spectra and normal coordinate analysis on an organic non-linear optical crystal-3-methoxy-4-hydroxy benzaldehyde Indian Journal of Pure & Applied Physics Vol. 43, November 2005, pp. 838-843 Vibrational spectra and normal coordinate analysis on an organic non-linear optical crystal-3-methoxy-4-hydroxy benzaldehyde

More information

metal-organic compounds

metal-organic compounds metal-organic compounds Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 b = 8.2387 (7) Å c = 14.7510 (13) Å = 106.1050 (10) V = 1987.5 (3) Å 3 Z =4 Mo K radiation = 2.78 mm 1 T

More information

7a. Structure Elucidation: IR and 13 C-NMR Spectroscopies (text , , 12.10)

7a. Structure Elucidation: IR and 13 C-NMR Spectroscopies (text , , 12.10) 2009, Department of Chemistry, The University of Western Ontario 7a.1 7a. Structure Elucidation: IR and 13 C-NMR Spectroscopies (text 11.1 11.5, 12.1 12.5, 12.10) A. Electromagnetic Radiation Energy is

More information

Supporting Information

Supporting Information Electronic Supplementary Material (ESI) for Dalton Transactions. This journal is The Royal Society of Chemistry 2016 Supporting Information Enhanced Catalytic Activity and Magnetization of Encapsulated

More information

Synthesis of 12 nm iron oxide nanoparticles

Synthesis of 12 nm iron oxide nanoparticles Electronic Supporting Information for Dendronized iron oxide nanoparticles as contrast agent for MRI Brice Basly, a Delphine Felder-Flesch,* a Pascal Perriat, b Claire Billotey, c Jacqueline Taleb, c Geneviève

More information

THE VIBRATIONAL SPECTRA OF A POLYATOMIC MOLECULE (Revised 3/27/2006)

THE VIBRATIONAL SPECTRA OF A POLYATOMIC MOLECULE (Revised 3/27/2006) THE VIBRATIONAL SPECTRA OF A POLYATOMIC MOLECULE (Revised 3/27/2006) 1) INTRODUCTION The vibrational motion of a molecule is quantized and the resulting energy level spacings give rise to transitions in

More information

Study on the Complexation of Macromolecule Cucurbituril with Metals and Acetamide

Study on the Complexation of Macromolecule Cucurbituril with Metals and Acetamide International Journal of Chemistry and Applications. ISSN 0974-3111 Volume 4, Number 3 (2012), pp. 219-226 International Research Publication House http://www.irphouse.com Study on the Complexation of

More information

the multiple helices

the multiple helices Supporting Information A 3D porous metal-organic framework containing nanotubes based on the multiple helices Lei Hou,* Li-Na Jia, Wen-Juan Shi, Li-Yun Du, Jiang Li, Yao-Yu Wang* and Qi-Zhen Shi Key Laboratory

More information

Structure and interactions in benzamide molecular crystals

Structure and interactions in benzamide molecular crystals Structure and interactions in benzamide molecular crystals Philipp Ectors 1, Dominique Ectors 2, Dirk Zahn 1 1) Lehrstuhl für Theoretische Chemie/Computer-Chemie-Centrum Friedrich-Alexander- Universität

More information

Vibrations. Matti Hotokka

Vibrations. Matti Hotokka Vibrations Matti Hotokka Identify the stuff I ve seen this spectrum before. I know what the stuff is Identify the stuff Let s check the bands Film: Polymer Aromatic C-H Aliphatic C-H Group for monosubstituted

More information

Research Article. Studies on Derivatives Uracil stability in various solvents and different functional groups: A DFT Study

Research Article. Studies on Derivatives Uracil stability in various solvents and different functional groups: A DFT Study Available online www.jocpr.com Journal of Chemical and Pharmaceutical Research, 2016, 8(7):290-297 Research Article ISSN : 0975-7384 CODEN(USA) : JCPRC5 Studies on Derivatives Uracil stability in various

More information

Experimental and Computational Vibration Study of Amino Acids

Experimental and Computational Vibration Study of Amino Acids Available online at www.ilcpa.pl International Letters of Chemistry, Physics and Astronomy 10(1) (2013) 1-17 ISSN 2299-3843 Experimental and Computational Vibration Study of Amino Acids Musa E. Mohamed

More information

AB INITIO CALCULATIONS AND VIBRATIONAL SPECTROSCOPIC STUDIES OF 2-CHLORO-6- METHOXYPYRIDINE

AB INITIO CALCULATIONS AND VIBRATIONAL SPECTROSCOPIC STUDIES OF 2-CHLORO-6- METHOXYPYRIDINE AB INITIO CALCULATIONS AND VIBRATIONAL SPECTROSCOPIC STUDIES OF 2-CHLORO-6- METHOXYPYRIDINE L.Usha Kumari a, M.Fathima Beegum a, B.Harikumar b, Hema Tresa Varghese c, C.Yohannan Panicker a* a Department

More information

Determination of the Electric Dipole Moment of a Molecule from. Density Functional Theory Calculations

Determination of the Electric Dipole Moment of a Molecule from. Density Functional Theory Calculations Determination of the Electric Dipole Moment of a Molecule from Density Functional Theory Calculations Byeong June Min Department of Physics, Daegu University, Kyungsan 712-714, Korea Density functional

More information

Computer simulation and study of the IR spectra of irradiated polymer materials

Computer simulation and study of the IR spectra of irradiated polymer materials Computer simulation and study of the IR spectra of irradiated polymer materials V Z Gabdrakipov 1, A A Kupchishin 1, A I Kupchishin 1, 2, K B Tlebaev 1 and V A Gyngazov 3 1 Abay Kazakh National Pedagogical

More information

Influence of Dilution with Methanol on Fermi's Resonance inccl 4 Vibrational Spectra

Influence of Dilution with Methanol on Fermi's Resonance inccl 4 Vibrational Spectra International Journal of ChemTech Research CODEN( USA): IJCRGG ISSN : 0974-4290 Vol.6, No.1, pp 521-526, Jan-March 2014 Influence of Dilution with Methanol on Fermi's Resonance inccl 4 Vibrational Spectra

More information

Spectroscopy in Inorganic Chemistry. Vibration and Rotation Spectroscopy

Spectroscopy in Inorganic Chemistry. Vibration and Rotation Spectroscopy Spectroscopy in Inorganic Chemistry Vibrational energy levels in a diatomic molecule f = k r r V = ½kX 2 Force constant r Displacement from equilibrium point 2 X= r=r-r eq V = ½kX 2 Fundamental Vibrational

More information

Vibrational Spectroscopy

Vibrational Spectroscopy Vibrational Spectroscopy In this part of the course we will look at the kind of spectroscopy which uses light to excite the motion of atoms. The forces required to move atoms are smaller than those required

More information

Controllable Growth of Bulk Cubic-Phase CH 3 NH 3 PbI 3 Single Crystal with Exciting Room-Temperature Stability

Controllable Growth of Bulk Cubic-Phase CH 3 NH 3 PbI 3 Single Crystal with Exciting Room-Temperature Stability Electronic Supplementary Material (ESI) for CrystEngComm. This journal is The Royal Society of Chemistry 2016 Electronic Supplementary Information Controllable Growth of Bulk Cubic-Phase CH 3 NH 3 PbI

More information

PAPER No.12 :Organic Spectroscopy MODULE No.29: Combined problem on UV, IR, 1 H NMR, 13 C NMR and Mass - Part I

PAPER No.12 :Organic Spectroscopy MODULE No.29: Combined problem on UV, IR, 1 H NMR, 13 C NMR and Mass - Part I Subject Chemistry Paper No and Title Module No and Title Module Tag 12: rganic Spectroscopy 29: Combined problem on UV, IR, 1 H NMR, 13 C NMR and Mass - Part I CHE_P12_M29 TABLE F CNTENTS 1. Learning utcomes

More information

A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane

A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane A Molecular Dynamics Simulation of a Homogeneous Organic-Inorganic Hybrid Silica Membrane Supplementary Information: Simulation Procedure and Physical Property Analysis Simulation Procedure The molecular

More information

Supplementary information. Nitrogen backbone oligomers

Supplementary information. Nitrogen backbone oligomers Supplementary information Nitrogen backbone oligomers Hongbo Wang 1,2, Mikhail I. Eremets 1 *, Ivan Troyan 1,3, Hanyu Liu 2, Yanming Ma 2, Luc Vereecken 1 1 Max Planck Institute for Chemistry, Biogeochemistry

More information

Morphology-controllable ZnO rings: ionic liquid-assisted hydrothermal synthesis, growth mechanism and photoluminescence properties

Morphology-controllable ZnO rings: ionic liquid-assisted hydrothermal synthesis, growth mechanism and photoluminescence properties Morphology-controllable ZnO rings: ionic liquid-assisted hydrothermal synthesis, growth mechanism and photoluminescence properties (Supporting information) Kezhen Qi, a Jiaqin Yang, a Jiaqi Fu, a Guichang

More information

Electronic Supporting Information

Electronic Supporting Information Electronic Supporting Information Solid-State Coexistence of {Zr 12 } and {Zr 6 } Zirconium Oxocarboxylate Clusters Iurie L. Malaestean, Meliha Kutluca Alıcı, Claire Besson, Arkady Ellern and Paul Kögerler*

More information

CHAPTER 1 SYSTEMATIC CLASSIFICATION OF NONLINEAR POLYMER TOPOLOGIES

CHAPTER 1 SYSTEMATIC CLASSIFICATION OF NONLINEAR POLYMER TOPOLOGIES CHAPTER 1 SYSTEMATIC CLASSIFICATION OF NONLINEAR POLYMER TOPOLOGIES Yasuyuki Tezuka Department of Organic and Polymeric Materials, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan E-mail: ytezuka@o.cc.titech.ac.jp

More information

FT-IR, FT-Raman And UV Spectra and Ab-Initio HF and DFT Vibrational Study of 1-Propyl 4-Piperidone

FT-IR, FT-Raman And UV Spectra and Ab-Initio HF and DFT Vibrational Study of 1-Propyl 4-Piperidone FT-IR, FT-Raman And UV Spectra and Ab-Initio HF and DFT Vibrational Study of 1-Propyl 4-Piperidone K. Rajalakshmi 1 and E.Elumalai 2 1 Department of Physics, Sri Chandrasekharendra Saraswathi Viswa Mahavidyalaya,

More information

Synthesis of Arborescent Polybutadiene. Ala Alturk and Mario Gauthier, IPR Symposium, University of Waterloo, N2L 3G1 Canada

Synthesis of Arborescent Polybutadiene. Ala Alturk and Mario Gauthier, IPR Symposium, University of Waterloo, N2L 3G1 Canada Synthesis of Arborescent Polybutadiene Ala Alturk and Mario Gauthier, IPR Symposium, University of Waterloo, N2L 3G1 anada Arborescent polymers are characterized by a tree-like architecture and a high

More information

Selectivity in the initial C-H bond cleavage of n-butane on PdO(101)

Selectivity in the initial C-H bond cleavage of n-butane on PdO(101) Supporting Information for Selectivity in the initial C-H bond cleavage of n-butane on PdO(101) Can Hakanoglu (a), Feng Zhang (a), Abbin Antony (a), Aravind Asthagiri (b) and Jason F. Weaver (a) * (a)

More information

Experimental and Quantum Investigation on Ice Surface Structure and Reactivity

Experimental and Quantum Investigation on Ice Surface Structure and Reactivity Experimental and Quantum Investigation on Ice Surface Structure and Reactivity A.Allouche J.P.Aycard F.Borget T.Chiavassa I.Couturier C.Manca F.Marinelli C.Martin S.Raunier P.Roubin Physique des Interactions

More information

Infrared Spectroscopy

Infrared Spectroscopy Infrared Spectroscopy IR Spectroscopy Used to identify organic compounds IR spectroscopy provides a 100% identification if the spectrum is matched. If not, IR at least provides information about the types

More information

Cluj-Napoca, Romania, RO Cluj-Napoca, Romania

Cluj-Napoca, Romania, RO Cluj-Napoca, Romania Theoretical Modeling and Experimental Study of Intramolecular Hydrogen-bond in Tetramethyl 3,7-dihydroxybicyclo[3.3.1]nona- 2,6-diene-2,4,6,8-tetracarboxylate N. Tosa a, A. Bende b, I. Bratu b, I. Grosu

More information

DENSITY FUNCTIONAL THEORY STUDIES ON IR SPECTRA OF THE TRIPHENYLENE DERIVATIVES. A SCALED QUANTUM MECHANICAL FORCE FIELD APPROACH

DENSITY FUNCTIONAL THEORY STUDIES ON IR SPECTRA OF THE TRIPHENYLENE DERIVATIVES. A SCALED QUANTUM MECHANICAL FORCE FIELD APPROACH Vol. 98 (2000) ACTA PHYSICA POLONICA A No. 5 Proceedings of the International Conference "Condensed Matter Physics", Jaszowiec 2000 DENSITY FUNCTIONAL THEORY STUDIES ON IR SPECTRA OF THE TRIPHENYLENE DERIVATIVES.

More information

NUMERICAL SIMULATION OF THE IR SPECTRA OF DNA BASES

NUMERICAL SIMULATION OF THE IR SPECTRA OF DNA BASES BIOPHYSICS NUMERICAL SIMULATION OF THE IR SPECTRA OF DNA BASES C. I. MORARI, CRISTINA MUNTEAN National Institute of Research and Development for Isotopic and Molecular Technologies P.O. Box 700, R-400293

More information

6.2 Polyatomic Molecules

6.2 Polyatomic Molecules 6.2 Polyatomic Molecules 6.2.1 Group Vibrations An N-atom molecule has 3N - 5 normal modes of vibrations if it is linear and 3N 6 if it is non-linear. Lissajous motion A polyatomic molecule undergoes a

More information

Pc2h = 22A~-}-lTB~+18Au + 21B~.

Pc2h = 22A~-}-lTB~+18Au + 21B~. INTERRETATION OF THE VIBRATIONAL SECTRA OF TERT-BUTYL AND DIMETHYLETHYNILMETHYL EROXIDES I.. Zyat'kov, G, A. itsevich, A.. Yuvchenko, Yu. L. Ol'dekop, V. I. Gogolinskii, V. L. Antonovskii, and D. I. Sagaidak

More information

Fourier Transform IR Spectroscopy

Fourier Transform IR Spectroscopy Fourier Transform IR Spectroscopy Absorption peaks in an infrared absorption spectrum arise from molecular vibrations Absorbed energy causes molecular motions which create a net change in the dipole moment.

More information

Infrared spectra of small biomolecules from first-principle molecular dynamics simulations and effective normal mode analysis

Infrared spectra of small biomolecules from first-principle molecular dynamics simulations and effective normal mode analysis Infrared spectra of small biomolecules from first-principle molecular dynamics simulations and effective normal mode analysis R. Vuilleumier, M.-P. Gaigeot and D. Borgis Département de chimie, Ecole Normale

More information

The characterization of MnO nanostructures synthesized using the chemical bath deposition method

The characterization of MnO nanostructures synthesized using the chemical bath deposition method The characterization of MnO nanostructures synthesized using the chemical bath deposition method LF Koao 1, F B Dejene 1* and HC Swart 2 1 Department of Physics, University of the Free State (Qwaqwa Campus),

More information

Biochemistry,530:,, Introduc5on,to,Structural,Biology, Autumn,Quarter,2015,

Biochemistry,530:,, Introduc5on,to,Structural,Biology, Autumn,Quarter,2015, Biochemistry,530:,, Introduc5on,to,Structural,Biology, Autumn,Quarter,2015, Course,Informa5on, BIOC%530% GraduateAlevel,discussion,of,the,structure,,func5on,,and,chemistry,of,proteins,and, nucleic,acids,,control,of,enzyma5c,reac5ons.,please,see,the,course,syllabus,and,

More information

Permeable Silica Shell through Surface-Protected Etching

Permeable Silica Shell through Surface-Protected Etching Permeable Silica Shell through Surface-Protected Etching Qiao Zhang, Tierui Zhang, Jianping Ge, Yadong Yin* University of California, Department of Chemistry, Riverside, California 92521 Experimental Chemicals:

More information

Homework Problem Set 1 Solutions

Homework Problem Set 1 Solutions Chemistry 380.37 Dr. Jean M. Standard omework Problem Set 1 Solutions 1. A student investigates a bond between atoms A and B in a molecule using a software package for molecular mechanics. The student

More information

Supporting Information

Supporting Information Supporting Information Wiley-VCH 2007 69451 Weinheim, Germany Carbene Activation of P 4 and Subsequent Derivatization Jason D. Masuda, Wolfgang W. Schoeller, Bruno Donnadieu, and Guy Bertrand * [*] Dr.

More information

This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and

This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution

More information

Nitro-benzylidene)-(3-nitro-phenyl)-amine (1) w. 1 PdCl 2

Nitro-benzylidene)-(3-nitro-phenyl)-amine (1) w. 1 PdCl 2 Korean J. Crystallography Vol. 16, No. 1, pp.6~10, 2005 (4-Nitro-benzylidene)-(3-nitro-phenyl)-amine trans-dichlorobis(3-nitroaniline)palladium(ii) Á * ³ w yw Structures of (4-Nitro-benzylidene)-(3-nitro-phenyl)-amine

More information

Redox-Responsive Complexation between a. Pillar[5]arene with Mono ethylene oxide Substituents. and Paraquat

Redox-Responsive Complexation between a. Pillar[5]arene with Mono ethylene oxide Substituents. and Paraquat Redox-Responsive Complexation between a Pillar[5]arene with Mono ethylene oxide Substituents and Paraquat Xiaodong Chi, Min Xue, Yong Yao and Feihe Huang* MOE Key Laboratory of Macromolecular Synthesis

More information

USING THE OCEAN OPTICS R-2000 RAMAN SPECTROMETER IN THE UNDERGRADUATE LABORATORY

USING THE OCEAN OPTICS R-2000 RAMAN SPECTROMETER IN THE UNDERGRADUATE LABORATORY Proceedings of the South Dakota Academy of Science, Vol. 79 (2000) 63 USING THE OCEAN OPTICS R-2000 RAMAN SPECTROMETER IN THE UNDERGRADUATE LABORATORY Deanna L. Donohoue, Gary W. Earl and Arlen Viste Department

More information

Tautomerism in 1-hydroxy-2-naphthaldehyde Schiff bases: Calculation of tautomeric isomers using carbon-13 NMR

Tautomerism in 1-hydroxy-2-naphthaldehyde Schiff bases: Calculation of tautomeric isomers using carbon-13 NMR Spectroscopy 17 (2003) 747 752 747 IOS Press Tautomerism in 1-hydroxy-2-naphthaldehyde Schiff bases: Calculation of tautomeric isomers using carbon-13 NMR Salman R. Salman a and Fadhil S. Kamounah b, a

More information

metal-organic compounds

metal-organic compounds metal-organic compounds Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 A binuclear cobalt(ii) complex of an NO 3 -donor Schiff base derived from 3-carboxylsalicylaldehyde and

More information

Supporting Information

Supporting Information Supporting Information New Hexaphosphane Ligands 1,3,5-C 6 H 3 {p-c 6 H 4 N(PX 2 ) 2 } 3 [X = Cl, F, C 6 H 3 OMe(C 3 H 5 )]: Synthesis, Derivatization and, Palladium(II) and Platinum(II) Complexes Sowmya

More information

Supporting Information Water-soluble 1,2,4-Triazole with Diethylene Glycol Monoethyl Ether

Supporting Information Water-soluble 1,2,4-Triazole with Diethylene Glycol Monoethyl Ether Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is The Royal Society of Chemistry 2014 Supporting Information Water-soluble 1,2,4-Triazole with Diethylene

More information

INPUT DESCRIPTION FOR SQM version 2.0

INPUT DESCRIPTION FOR SQM version 2.0 INPUT DESCRIPTION FOR SQM version 2.0 INTRODUCTION SQM is an add-on module for the PQS program which scales force constants to produce a Scaled Quantum Mechanical (SQM) Force Field. This can correct for

More information

PECULIARITIES OF THE SERS SPECTRA OF THE HYDROQUINONE MOLECULE ADSORBED ON TITANIUM DIOXID

PECULIARITIES OF THE SERS SPECTRA OF THE HYDROQUINONE MOLECULE ADSORBED ON TITANIUM DIOXID PECULIARITIES OF THE SERS SPECTRA OF THE HYDROQUINONE MOLECULE ADSORBED ON TITANIUM DIOXID A.M. Polubotko *, V.P. Chelibanov** *A.F. Ioffe Physico-Technical Institute Russian Academy of Sciences, Politechnicheskaya

More information

Synthesis and Characterization of Dioxouranium (VI) complexes with Salicylyl hydrazine based Mixed Ligands

Synthesis and Characterization of Dioxouranium (VI) complexes with Salicylyl hydrazine based Mixed Ligands IOSR Journal of Engineering (IOSRJEN) ISSN (e): 22503021, ISSN (p): 22788719 Vol. 07, Issue 09 (September. 2017), V2 PP 5559 www.iosrjen.org Synthesis and Characterization of Dioxouranium (VI) complexes

More information

CHEM 241 UNIT 5: PART A DETERMINATION OF ORGANIC STRUCTURES BY SPECTROSCOPIC METHODS [MASS SPECTROMETRY]

CHEM 241 UNIT 5: PART A DETERMINATION OF ORGANIC STRUCTURES BY SPECTROSCOPIC METHODS [MASS SPECTROMETRY] CHEM 241 UNIT 5: PART A DETERMINATION OF ORGANIC STRUCTURES BY SPECTROSCOPIC METHODS [MASS SPECTROMETRY] 1 Introduction Outline Mass spectrometry (MS) 2 INTRODUCTION The analysis of the outcome of a reaction

More information

Supporting information for. Imino-Chitosan Biodynamers

Supporting information for. Imino-Chitosan Biodynamers Supporting information for Imino-Chitosan Biodynamers Luminita Marin, a Bogdan C. Simionescu, a,b Mihail Barboiu c* a PetruPoni Institute of Macromolecular Chemistry of Romanian Academy 41A, Aleea Gr.

More information

A Combined Optical and EPR Spectroscopy Study: Azobenzene-Based Biradicals as Reversible Molecular Photoswitches

A Combined Optical and EPR Spectroscopy Study: Azobenzene-Based Biradicals as Reversible Molecular Photoswitches Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2017 A Combined Optical and EPR Spectroscopy Study: Azobenzene-Based Biradicals as Reversible

More information

= (8) V = (8) Å 3 Z =4 Mo K radiation. Data collection. Refinement. R[F 2 >2(F 2 )] = wr(f 2 ) = S = reflections

= (8) V = (8) Å 3 Z =4 Mo K radiation. Data collection. Refinement. R[F 2 >2(F 2 )] = wr(f 2 ) = S = reflections organic compounds Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 1-(3-Amino-1H-inden-2-yl)ethanone Dong-Yue Hu and Zhi-Rong Qu* Ordered Matter Science Research Center, College

More information

Vibrational Spectra of Nucleic Acid Bases and Their Watson Crick Pair Complexes

Vibrational Spectra of Nucleic Acid Bases and Their Watson Crick Pair Complexes Vibrational Spectra of Nucleic Acid Bases and Their Watson Crick Pair Complexes 1 2 2 2 R. SANTAMARIA, * E. CHARRO, ** A. ZACARIAS, M. CASTRO 1 Northwestern University Medical School, Department of Molecular

More information

Exchange Correlation Functional Investigation of RT-TDDFT on a Sodium Chloride. Dimer. Philip Straughn

Exchange Correlation Functional Investigation of RT-TDDFT on a Sodium Chloride. Dimer. Philip Straughn Exchange Correlation Functional Investigation of RT-TDDFT on a Sodium Chloride Dimer Philip Straughn Abstract Charge transfer between Na and Cl ions is an important problem in physical chemistry. However,

More information

On the Origin of High Ionic Conductivity in Na-doped SrSiO 3

On the Origin of High Ionic Conductivity in Na-doped SrSiO 3 Electronic Supplementary Material (ESI) for Chemical Science. This journal is The Royal Society of Chemistry 2016 On the Origin of High Ionic Conductivity in Na-doped SrSiO 3 Po-Hsiu Chien, a Youngseok

More information

Supplementary Figures Supplementary Figure 1. ATR-IR spectra of 2 (top) and 2D (bottom).

Supplementary Figures Supplementary Figure 1. ATR-IR spectra of 2 (top) and 2D (bottom). Supplementary Figures Supplementary Figure 1. ATR-IR spectra of 2 (top) and 2D (bottom). Supplementary Figure 2. ATR-IR spectra of 3 (top) and 3D (bottom). 1 Supplementary Figure 3. ATR-IR spectra of 5

More information

Supporting Information

Supporting Information Electronic Supplementary Material (ESI) for CrystEngComm. This journal is The Royal Society of Chemistry 2015 Supporting Information Single-Crystal-to-Single-Crystal Transformation of an Anion Exchangeable

More information

CHE 325 SPECTROSCOPY (A) CHAP 13A ASSIGN CH 2 CH CH 2 CH CHCH 3

CHE 325 SPECTROSCOPY (A) CHAP 13A ASSIGN CH 2 CH CH 2 CH CHCH 3 CE 325 SPECTRSCPY (A) CAP 13A ASSIGN 1. Which compound would have a UV absorption band at longest wavelength? A. I B. II C. III D. IV E. V C CC 3 CC C 2 C CC 3 I II III C 2 C C 2 C CC 3 IV V 2. Select

More information

More information can be found in Chapter 12 in your textbook for CHEM 3750/ 3770 and on pages in your laboratory manual.

More information can be found in Chapter 12 in your textbook for CHEM 3750/ 3770 and on pages in your laboratory manual. CHEM 3780 rganic Chemistry II Infrared Spectroscopy and Mass Spectrometry Review More information can be found in Chapter 12 in your textbook for CHEM 3750/ 3770 and on pages 13-28 in your laboratory manual.

More information

Headspace Raman Spectroscopy

Headspace Raman Spectroscopy ELECTRONICALLY REPRINTED FROM SEPTEMBER 2014 Molecular Spectroscopy Workbench Raman Spectroscopy We examine vapor-phase Raman spectroscopy through the acquisition of spectra from gas molecules confined

More information

Systems Based on Dendrimers and Antitumoral Drug Synthesized by Non-covalent Method The influence of dendrimers generation

Systems Based on Dendrimers and Antitumoral Drug Synthesized by Non-covalent Method The influence of dendrimers generation Systems Based on Dendrimers and Antitumoral Drug Synthesized by Non-covalent Method The influence of dendrimers generation SORINA ALEXANDRA GAREA *, ADI GHEBAUR, CORINA ANDRONESCU 1 University Politehnica

More information

Electronic Spectra and Magnetic Properties of Transition Metal Complexes)

Electronic Spectra and Magnetic Properties of Transition Metal Complexes) Subject Chemistry Paper No and Title Module No and Title Module Tag Paper 7: Inorganic Chemistry-II (Metal-Ligand Bonding, Electronic Spectra and Magnetic Properties of Transition Metal 20: Isomerism part

More information

Experiment Section Fig. S1 Fig. S2

Experiment Section Fig. S1 Fig. S2 Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2018 Supplementary Materials Experiment Section The STM experiments were carried out in an ultrahigh

More information

Fourier Transform Infrared Spectroscopy of Metal Ligand Complexes *

Fourier Transform Infrared Spectroscopy of Metal Ligand Complexes * OpenStax-CNX module: m34660 1 Fourier Transform Infrared Spectroscopy of Metal Ligand Complexes * Jiebo Li Andrew R. Barron This work is produced by OpenStax-CNX and licensed under the Creative Commons

More information

Supporting Information. Photophysics of Threaded sp-carbon Chains: The Polyyne is a Sink for Singlet and Triplet Excitation

Supporting Information. Photophysics of Threaded sp-carbon Chains: The Polyyne is a Sink for Singlet and Triplet Excitation Supporting Information Photophysics of Threaded sp-carbon Chains: The Polyyne is a Sink for Singlet and Triplet Excitation Levon D. Movsisyan, Martin D. Peeks, Gregory M. Greetham, Michael Towrie, Amber

More information

Ultraviolet-Visible and Infrared Spectrophotometry

Ultraviolet-Visible and Infrared Spectrophotometry Ultraviolet-Visible and Infrared Spectrophotometry Ahmad Aqel Ifseisi Assistant Professor of Analytical Chemistry College of Science, Department of Chemistry King Saud University P.O. Box 2455 Riyadh 11451

More information

NANOGRAPHITES AND THEIR COMPOUNDS

NANOGRAPHITES AND THEIR COMPOUNDS NANOGRAPHITES AND THEIR COMPOUNDS Albert M. Ziatdinov Institute of Chemistry, Far Eastern Branch of the Russian Academy of Sciences. Vladivostok, Russia E-mail: albert_ziatdinov@mail.primorye.ru Introduction

More information

New tetranuclear manganese clusters with [MnII3MnIII] and [MnII2MnIII2] metallic cores exhibiting the low and high spin ground state

New tetranuclear manganese clusters with [MnII3MnIII] and [MnII2MnIII2] metallic cores exhibiting the low and high spin ground state Electronic Supplementary Material (ESI) for Dalton Transactions. This journal is The Royal Society of Chemistry 2016 New tetranuclear manganese clusters with [MnII3MnIII] and [MnII2MnIII2] metallic cores

More information

SUPPLEMENTAL MATERIAL

SUPPLEMENTAL MATERIAL SUPPLEMENTAL MATERIAL Systematic Coarse-Grained Modeling of Complexation between Small Interfering RNA and Polycations Zonghui Wei 1 and Erik Luijten 1,2,3,4,a) 1 Graduate Program in Applied Physics, Northwestern

More information

Electrochemistry. in situ in situ. in situ. Key Words. electrochemical surface science. flame annealing and quenching method.

Electrochemistry. in situ in situ. in situ. Key Words. electrochemical surface science. flame annealing and quenching method. in situ in situ in situ Key Words electrochemical surface science flame annealing and quenching method in situ in situ in situ not only but also in situ Q Q Q in situ δ q r in situ in situ et al in situ

More information