Reaction Rate (Kinetics) Reaction Rate
|
|
- Marian Alexander
- 5 years ago
- Views:
Transcription
1 Instructor: Allan Felsot Fall 2 Reaction Rate (Kinetics) ES/RP 3 Fundamentals of Environmental Toxicology Lecture / Pharmacokinetics (Toxicokinetics) & Pharmacodynamics (Toxicodynamics) Part 2 Importance of metabolism in detoxification or activation of a toxicant depends on Capability of detox. enzymes for catalyzing the reaction Dependent on ability of toxicant to form a complex with the detox. enzyme Rate of reaction Faster reactions will increase the rate of elimination of the toxicant Less re-circulating to blood and tissues Reaction Rate Described by mathematical functions known as rate laws Describe the relationship between tim and the concentration of the toxicant Two commonly used functions Power rate law First-order rate equation yperbolic kinetics Michaelis-Menton Kinetics Linear Function Logarithmic Function Reaction Kinetics Rate Law = a mathematical function or differential equation describing the turnover rate of a compound as a function of the concentration Linearization of First-Order Function Power Rate Law Rate = "dc dt = kc n First Order when n = ln ln t = "kt + ln T /2 = ln2/k =.693/k K = rate constant (/day) d [ C ] t dt or =! k [ C ] [ C ] t = [ C ] e! kt Differential eq. Integrated eq. alf-life is independent of concentration
2 yperbolic Kinetics Rate = "dc dt = Rate of Reaction, k k C k 2 +C Enzyme or surface catalyzed. Rate slows down as increases. V max Velocity of Rx.. V max K K3 E + S ES E + P K2 K [S] V max V = [S] + K m Concentration of Chemical, or [S] K m Substrate Concentration Double Reciprocal Plot for Calculation of Vmax & Km /v Lineweaver-urk Plot Slope: K m /V max Practical Application of Michaelis-Menton Kinetics Disappearance of toxicant speeds up as concentration decreases below the level associated with Vmax or enzyme saturation. owever, at sufficiently low concentration, metabolism might slow again because of necessity for complexation before reaction moves toward the product side. Intercept: -/K m Intercept: /V max /[S] Elimination Excretion The Ultimate Fate Excretion Metabolic reactions result in more water soluble compounds, facilitating excretion Reduction in amount of parent compound available to target sites earance Volume of blood (or plasma) cleared of chemical per unit time Routes Expired air, saliva, bile, feces, urine, milk, hair Extent less important than rate All compounds eventually % excreted 2
3 Insects have Malpighian tubules that function analogously to kidneys 2,-D Excreted y Ground Applicators Activity & Total Dosage mix/load/apply 7.8 µg/kg µg/kg 3 mix/load µg/kg apply.9 µg/kg Days After Application Application Area Under the Curve (AUC) Gives Information About Whole ody Dose Adapted from Nash et al. 82 Toxicokinetics & Exposure Route ased on Nolan et al. (98) Tox. Appl. Pharm. 73:8 Chlorpyrifos Elimination rate can differ among different development stages Experiment by sin & Coats (986) Pestic. iochem. Physiol. 2:336 Corn Rootworm Adult Corn Rootworm Larva S P O N O O O isofenphos Metabolism and Excretion Influences Selectivity Corn Rootworm ours After Dosing with Isofenphos sin & Coats (986) Pestic. iochem. Physiol. 2:336 Storage Type of elimination mechanism Influenced by rate of metabolism and hydrophobicity Example: DDT Slow metabolic rate igh Kow Temporary mechanism in that chemical is released from storage sites Equilibrium between adipose tissue and blood Of concern for very recalcitrant compounds Concept of bioconcentration factor (ecotox.) Ratio of matrix (or food) concentration to concentration in an organism 3
4 Case Study Uptake, metabolism, and elimination of two hydrophobic contaminants by midge larvae Experiment from Lydy et al. (2) Arch. Environ. Contam. Toxicol. 38:63 Exposed midge larvae in water to either or 2-chlorobiphenyl (2-C) larva pupa adult WS: ~ µg/l Log Kow: ~.7 Nominal Water Concentration: 7.3 µg/l 2-chlorobiphenyl WS: ~9 µg/l Log Kow: ~.9 Nominal Water Concentration:. µg/l (nmol/g) Uptake Phase 2 Elimination Phase Modified from Lydy et al. (2) Arch. Environ. Contamin. Toxicol. 38: (h) 2-C (nmol/g) Uptake Phase Elimination Phase Modified from Lydy et al. (2) Arch. Environ. Contamin. Toxicol. 38:63-68 Total chemical (C) 2-C parent Polar metabolites (h) Two Compartment Toxicokinetic Model k u Uptake clearance coefficient Cp [parent compound in animal] Metabolite formation constant k m k ep Parent elimination rate constant Toxicokinetic Functions C a = k u * C w * t C a = total in midge C w = concentration in water K u = uptake clearance coefficient Modified from Lydy et al. (2) Arch. Environ. Contamin. Toxicol. 38:63-68 Cm [metabolites in animal] k em Metabolite elimination rate constant 2-chlorobiphenyl dctot/dt = (k u Cw) - (k ep Cp) - (k em Cm) Ctot = total 2-C residues in midge larvae
5 Modeling Results (Lydy et al. 2) Parameter 2-C K u (ml/g/h) K ep (h - ). K em (h - ).73 K m (h - ).3 CF Toxicokinetics & Plants All mechanisms & processes same as in animals owever, must consider dose transfer from the environment (ditto if considering aquatic and soil dwelling animals) Other parameters important Soil sorption coefficient (Koc) Air:water transfer coefficient (K ) T/2 (days).7 Conceptual Model of Relationships
Definitions. ES/RP 532 Applied Environmental Toxicology. Reaction Mechanisms. Definitions. Abiotic vs. Biotic Reactions.
ES/R 532 Applied Environmental Toxicology Lecture 5 Kinetics & Reactivity (Environmental Attenuation of Contaminants Degradation Definitions Decrease in concentration of a contaminant due to nonreversible
More informationAttenuation Processes. Definitions. Definitions. Attenuation. The degradation process results in changed molecular structure
ES/R 531 Fundamentals of Environmental Toxicology Lecture 22 Instructor: Allan Felsot afelsot@tricity.wsu.edu Fall 2005 Abiotic/iotic Degradation & Transformation (Environmental Attenuation of Contaminants)
More informationEnzyme Reactions. Lecture 13: Kinetics II Michaelis-Menten Kinetics. Margaret A. Daugherty Fall v = k 1 [A] E + S ES ES* EP E + P
Lecture 13: Kinetics II Michaelis-Menten Kinetics Margaret A. Daugherty Fall 2003 Enzyme Reactions E + S ES ES* EP E + P E = enzyme ES = enzyme-substrate complex ES* = enzyme/transition state complex EP
More informationMichaelis-Menten Kinetics. Lecture 13: Kinetics II. Enzyme Reactions. Margaret A. Daugherty. Fall Substrates bind to the enzyme s active site
Lecture 13: Kinetics II Michaelis-Menten Kinetics Margaret A. Daugherty Fall 2003 Enzyme Reactions E + S ES ES* EP E + P E = enzyme ES = enzyme-substrate complex ES* = enzyme/transition state complex EP
More informationNonlinear pharmacokinetics
5 Nonlinear pharmacokinetics 5 Introduction 33 5 Capacity-limited metabolism 35 53 Estimation of Michaelis Menten parameters(v max andk m ) 37 55 Time to reach a given fraction of steady state 56 Example:
More informationThe general concept of pharmacokinetics
The general concept of pharmacokinetics Hartmut Derendorf, PhD University of Florida Pharmacokinetics the time course of drug and metabolite concentrations in the body Pharmacokinetics helps to optimize
More informationMichaelis-Menton kinetics
Michaelis-Menton kinetics The rate of an enzyme catalyzed reaction in which substrate S is converted into products P depends on the concentration of the enzyme E even though the enzyme does not undergo
More informationA. One-Substrate Reactions (1) Kinetic concepts
A. One-Substrate Reactions (1) Kinetic concepts (2) Kinetic analysis (a) Briggs-Haldane steady-state treatment (b) Michaelis constant (K m ) (c) Specificity constant (3) Graphical analysis (4) Practical
More informationHomework 1 (PHA 5127)
Homework 1 (PHA 5127) 1. The elimination rate constant of a drug is 1 hr -1 : k e =1 hr -1 A. Half-life: t 1/2 = ln(2)/k e = 0.693/1 hr -1 = 0.693 hr B. C 1 =5ng/ml First-order elimination: k e = (ln(c
More informationPHARMACOKINETIC DERIVATION OF RATES AND ORDERS OF REACTIONS IN MULTI- COMPARTMENT MODEL USING MATLAB
IJPSR (2016), Vol. 7, Issue 11 (Research Article) Received on 29 May, 2016; received in revised form, 07 July, 2016; accepted, 27 July, 2016; published 01 November, 2016 PHARMACOKINETIC DERIVATION OF RATES
More informationLecture 15 (10/20/17) Lecture 15 (10/20/17)
Reading: Ch6; 98-203 Ch6; Box 6- Lecture 5 (0/20/7) Problems: Ch6 (text); 8, 9, 0,, 2, 3, 4, 5, 6 Ch6 (study guide-facts); 6, 7, 8, 9, 20, 2 8, 0, 2 Ch6 (study guide-applying); NEXT Reading: Ch6; 207-20
More informationChem Lecture 4 Enzymes Part 2
Chem 452 - Lecture 4 Enzymes Part 2 Question of the Day: Is there some easy way to clock how many reactions one enzyme molecule is able to catalyze in an hour? Thermodynamics I think that enzymes are molecules
More informationENZYME KINETICS. What happens to S, P, E, ES?
ENZYME KINETICS Go to lecture notes and/or supplementary handouts for the following: 1 Basic observations in enzyme inetics 2 Michaelis-Menten treatment of enzyme inetics 3 Briggs-Haldane treatment of
More informationEnzymes II. Dr. Mamoun Ahram Summer, 2017
Enzymes II Dr. Mamoun Ahram Summer, 2017 Kinetics Kinetics is deals with the rates of chemical reactions. Chemical kinetics is the study of the rates of chemical reactions. For the reaction (A P), The
More informationLecture 4 STEADY STATE KINETICS
Lecture 4 STEADY STATE KINETICS The equations of enzyme kinetics are the conceptual tools that allow us to interpret quantitative measures of enzyme activity. The object of this lecture is to thoroughly
More informationChemical kinetics and catalysis
Chemical kinetics and catalysis Outline Classification of chemical reactions Definition of chemical kinetics Rate of chemical reaction The law of chemical raction rate Collision theory of reactions, transition
More informationRate laws, Reaction Orders. Reaction Order Molecularity. Determining Reaction Order
Rate laws, Reaction Orders The rate or velocity of a chemical reaction is loss of reactant or appearance of product in concentration units, per unit time d[p] = d[s] The rate law for a reaction is of the
More informationA First Course on Kinetics and Reaction Engineering. Class 9 on Unit 9
A First Course on Kinetics and Reaction Engineering Class 9 on Unit 9 Part I - Chemical Reactions Part II - Chemical Reaction Kinetics Where We re Going A. Rate Expressions - 4. Reaction Rates and Temperature
More informationLecture 13: Data Analysis for the V versus [S] Experiment and Interpretation of the Michaelis-Menten Parameters
Biological Chemistry Laboratory Biology 3515/Chemistry 3515 Spring 2018 Lecture 13: Data Analysis for the V versus [S] Experiment and Interpretation of the Michaelis-Menten Parameters 20 February 2018
More informationValidation of the GastroPlus TM Software Tool and Applications
Validation of the GastroPlus TM Software Tool and Applications Fagen Zhang and Leah Luna The Dow Chemical Company FZ/MB 01.11.11 Acknowledgements Michael Bartels Barun Bhhatarai (Novartis) Tyler Auernhammer
More informationINTERNAL RADIATION DOSIMETRY
INTERNAL RADIATION DOSIMETRY Introduction to Internal Dosimetry Importance of External and Internal Exposures by Radiation Type Charged particle radiation (α, p, β) Generally important only for internal
More informationEnzymes Part III: Enzyme kinetics. Dr. Mamoun Ahram Summer semester,
Enzymes Part III: Enzyme kinetics Dr. Mamoun Ahram Summer semester, 2015-2016 Kinetics Kinetics is deals with the rates of chemical reactions. Chemical kinetics is the study of the rates of chemical reactions.
More informationPrevious Class. Today. Michaelis Menten equation Steady state vs pre-steady state
Previous Class Michaelis Menten equation Steady state vs pre-steady state Today Review derivation and interpretation Graphical representation Michaelis Menten equations and parameters The Michaelis Menten
More informationKinetics (Abiotic/Biotic) & Reactivity (a.k.a. Environmental Attenuation of Contaminants)
November 9, 2005 Lecture 22 Kinetics (Abiotic/iotic) & Reactivity (a.k.a. Environmental Attenuation of Contaminants) I. Definitions A. Attenuation decrease in concentration of a chemical in one of the
More informationMIDW 125 Math Review and Equation Sheet
MIDW 125 Math Review and Equation Sheet 1. The Metric System Measures of weight are based on the gram (g): 1 kilogram = 1 kg = 1000 gram = 1000 g = 10 3 g 1 milligram = 1 mg = 10 3 g 1 microgram = 1 g
More informationAfter lectures by. disappearance of reactants or appearance of. measure a reaction rate we monitor the. Reaction Rates (reaction velocities): To
Revised 3/21/2017 After lectures by Dr. Loren Williams (GeorgiaTech) Protein Folding: 1 st order reaction DNA annealing: 2 nd order reaction Reaction Rates (reaction velocities): To measure a reaction
More informationNano-Ecotoxicology Assessment of Potential Effects of Engineered Nanomaterials in the Environment
Source: Armin Springer Source: Clemson University Nano-Ecotoxicology Assessment of Potential Effects of Engineered Nanomaterials in the Environment Dana Kühnel Department Bioanalytical Ecotoxicology Toxicology
More informationOverview of Kinetics
Overview of Kinetics [P] t = ν = k[s] Velocity of reaction Conc. of reactant(s) Rate of reaction M/sec Rate constant sec -1, M -1 sec -1 1 st order reaction-rate depends on concentration of one reactant
More informationMulticompartment Pharmacokinetic Models. Objectives. Multicompartment Models. 26 July Chapter 30 1
Multicompartment Pharmacokinetic Models Objectives To draw schemes and write differential equations for multicompartment models To recognize and use integrated equations to calculate dosage regimens To
More information- A7/13 - PART 2. Matrix Analyte(s) Method LOQ Reference. HPLC with fluorescence detection after acid hydrolysis
- A7/1 - Appendix 7 Format for the Compilation of Tier II Summaries - Active substance PART Section Analytical methods The example of a summary and assessment of data which follows is intended to illustrate
More informationNoncompartmental vs. Compartmental Approaches to Pharmacokinetic Data Analysis Paolo Vicini, Ph.D. Pfizer Global Research and Development David M.
Noncompartmental vs. Compartmental Approaches to Pharmacokinetic Data Analysis Paolo Vicini, Ph.D. Pfizer Global Research and Development David M. Foster., Ph.D. University of Washington October 18, 2012
More informationPart II => PROTEINS and ENZYMES. 2.7 Enzyme Kinetics 2.7a Chemical Kinetics 2.7b Enzyme Inhibition
Part II => PROTEINS and ENZYMES 2.7 Enzyme Kinetics 2.7a Chemical Kinetics 2.7b Enzyme Inhibition Section 2.7a: Chemical Kinetics Synopsis 2.7a - Chemical kinetics (or reaction kinetics) is the study of
More informationTK Solver Case Study: Pharmacokinetics
TK Solver Case Study: Pharmacokinetics The content for this example was provided by Professor Prasad Dhurjati of the University of Delaware. It is used there in the class Applied Mathematics for Chemical
More informationModeling More Complex Systems ABE 5646 Week 6, Spring 2010
Modeling More Complex Systems ABE 5646 Week 6, Spring 2010 Week Description Reading Material 6 Modeling Temperature Effects on Biological Systems Effects on chemical reaction rates Effects on biological
More informationBioengineering Laboratory I. Enzyme Assays. Part II: Determination of Kinetic Parameters Fall Semester
Bioengineering Laboratory I Enzyme Assays Part II: Determination of Kinetic Parameters 2016-2017 Fall Semester 1. Theoretical background There are several mathematical models to determine the kinetic constants
More informationEnzyme reaction example of Catalysis, simplest form: E + P at end of reaction No consumption of E (ES): enzyme-substrate complex Intermediate
V 41 Enzyme Kinetics Enzyme reaction example of Catalysis, simplest form: k 1 E + S k -1 ES E at beginning and ES k 2 k -2 E + P at end of reaction No consumption of E (ES): enzyme-substrate complex Intermediate
More informationCharacterization Methods of Manufactured Nanomaterials for EHS Studies
Characterization Methods of Manufactured Nanomaterials for EHS Studies Steven W Brown, MS, CIH International Standards Organization Technical Committee #229 on Nanotechnologies Convener Work Group #3 Environmental
More informationPrinciples of Drug Design
Advanced Medicinal Chemistry II Principles of Drug Design Tentative Course Outline Instructors: Longqin Hu and John Kerrigan Direct questions and enquiries to the Course Coordinator: Longqin Hu I. Introduction
More informationProteins Act As Catalysts
Proteins Act As Catalysts Properties of Enzymes Catalyst - speeds up attainment of reaction equilibrium Enzymatic reactions -10 3 to 10 17 faster than the corresponding uncatalyzed reactions Substrates
More informationENZYME SCIENCE AND ENGINEERING PROF. SUBHASH CHAND DEPARTMENT OF BIOCHEMICAL ENGINEERING AND BIOTECHNOLOGY IIT DELHI LECTURE 7
ENZYME SCIENCE AND ENGINEERING PROF. SUBHASH CHAND DEPARTMENT OF BIOCHEMICAL ENGINEERING AND BIOTECHNOLOGY IIT DELHI LECTURE 7 KINETICS OF ENZYME CATALYSED REACTIONS (CONTD.) So in the last lecture we
More informationAuthor's personal copy
Science of the Total Environment 408 (2010) 3735 3739 Contents lists available at ScienceDirect Science of the Total Environment journal homepage: www.elsevier.com/locate/scitotenv Understanding toxicity
More information2. Under what conditions can an enzyme assay be used to determine the relative amounts of an enzyme present?
Chem 315 In class/homework problems 1. a) For a Michaelis-Menten reaction, k 1 = 7 x 10 7 M -1 sec -1, k -1 = 1 x 10 3 sec -1, k 2 = 2 x 10 4 sec -1. What are the values of K s and K M? K s = k -1 / k
More informationChemistry 112 Chemical Kinetics. Kinetics of Simple Enzymatic Reactions: The Case of Competitive Inhibition
Chemistry Chemical Kinetics Kinetics of Simple Enzymatic Reactions: The Case of Competitive Inhibition Introduction: In the following, we will develop the equations describing the kinetics of a single
More informationQuantitative Pooling of Michaelis-Menten Equations in Models with Parallel Metabolite Formation Paths
Journal of Pharmacokinetics and Biopharmaceutics, Vol. 2, No. 2, I974 Quantitative Pooling of Michaelis-Menten Equations in Models with Parallel Metabolite Formation Paths Allen J. Sedman ~ and John G.
More informationExam 3 Review (4/12/2011) Lecture note excerpt covering lectures (Exam 3 topics: Chapters 8, 12, 14 & 15)
Exam 3 Review (4/12/2011) Lecture note excerpt covering lectures 17-23 (Exam 3 topics: Chapters 8, 12, 14 & 15) Enzyme Kinetics, Inhibition, and Regulation Chapter 12 Enzyme Kinetics When the concentration
More informationLecture # 3, 4 Selecting a Catalyst (Non-Kinetic Parameters), Review of Enzyme Kinetics, Selectivity, ph and Temperature Effects
1.492 - Integrated Chemical Engineering (ICE Topics: Biocatalysis MIT Chemical Engineering Department Instructor: Professor Kristala Prather Fall 24 Lecture # 3, 4 Selecting a Catalyst (Non-Kinetic Parameters,
More informationClass Business. I will have Project I graded by the end of the week. The discussion groups for Project 2 are cancelled
Quiz 1 Class Business I will have Project I graded by the end of the week. Project 2 is due on 11/15 The discussion groups for Project 2 are cancelled There is additional reading for classes held on 10/30
More informationSpring 2014 Chemistry II Chapter 13
CHAPTER 13 - Chemical Kinetics: Rates of Reactions 01-[13z]. Review the data below for the catalytic cracking of cyclohexane at 500 C. What is the order of the reaction? Concentration of Cyclohexane, M
More information1.1 Characteristics common to organisms
Biology Form 3 Page 5 Ms. R. Buttigieg 1.1 Characteristics common to organisms see GCSE Biology pg. 292 Biology is the study of living things. We call living things organisms. Plants and animals are ALL
More informationMembranes 2: Transportation
Membranes 2: Transportation Steven E. Massey, Ph.D. Associate Professor Bioinformatics Department of Biology University of Puerto Rico Río Piedras Office & Lab: NCN#343B Tel: 787-764-0000 ext. 7798 E-mail:
More information1. Introduction to Chemical Kinetics
1. Introduction to Chemical Kinetics objectives of chemical kinetics 1) Determine empirical rate laws H 2 + I 2 2HI How does the concentration of H 2, I 2, and HI change with time? 2) Determine the mechanism
More informationKinetics. Chapter 14. Chemical Kinetics
Lecture Presentation Chapter 14 Yonsei University In kinetics we study the rate at which a chemical process occurs. Besides information about the speed at which reactions occur, kinetics also sheds light
More informationEndocrine Physiology. Introduction to Endocrine Principles
Endocrine Physiology Introduction to Endocrine Principles There are TWO major groups of hormones Peptide and protein hormones Amine hormones Peptide and protein hormones act through cell membrane receptors
More informationCHAPTER 1: ENZYME KINETICS AND APPLICATIONS
CHAPTER 1: ENZYME KINETICS AND APPLICATIONS EM 1 2012/13 ERT 317 BIOCHEMICAL ENGINEERING Course details Credit hours/units : 4 Contact hours : 3 hr (L), 3 hr (P) and 1 hr (T) per week Evaluations Final
More informationCHM333 LECTURES 14 & 15: 2/15 17/12 SPRING 2012 Professor Christine Hrycyna
ENZYME KINETICS: The rate of the reaction catalyzed by enzyme E A + B P is defined as -Δ[A] or -Δ[B] or Δ[P] Δt Δt Δt A and B changes are negative because the substrates are disappearing P change is positive
More informationNoncompartmental vs. Compartmental Approaches to Pharmacokinetic Data Analysis Paolo Vicini, Ph.D. Pfizer Global Research and Development David M.
Noncompartmental vs. Compartmental Approaches to Pharmacokinetic Data Analysis Paolo Vicini, Ph.D. Pfizer Global Research and Development David M. Foster., Ph.D. University of Washington October 28, 2010
More informationEnzyme Kinetics. Michaelis-Menten Theory Dehaloperoxidase: Multi-functional Enzyme. NC State University
Enzyme Kinetics Michaelis-Menten Theory Dehaloperoxidase: Multi-functional Enzyme NC State University Michaelis-Menton kinetics The rate of an enzyme catalyzed reaction in which substrate S is converted
More informationEnzyme Kinetics 2014
V 41 Enzyme Kinetics 2014 Atkins Ch.23, Tinoco 4 th -Ch.8 Enzyme rxn example Catalysis/Mechanism: E + S k -1 ES k 1 ES E is at beginning and k 2 k -2 E + P at end of reaction Catalyst: No consumption of
More informationSTUDY GUIDE #2 Winter 2000 Chem 4540 ANSWERS
STUDY GUIDE #2 Winter 2000 Chem 4540 ANSWERS R. Merrill 1. Sketch the appropriate plots on the following axes. Assume that simple Michaelis- Menten kinetics apply. 2. The enzyme-catalyzed hydrolysis of
More informationPHA 4123 First Exam Fall On my honor, I have neither given nor received unauthorized aid in doing this assignment.
PHA 4123 First Exam Fall 1998 On my honor, I have neither given nor received unauthorized aid in doing this assignment. TYPED KEY Name Question 1. / pts 2. /2 pts 3. / pts 4. / pts. / pts 6. /10 pts 7.
More informationPrevious Class. Today. Cosubstrates (cofactors)
Previous Class Cosubstrates (cofactors) Today Proximity effect Basic equations of Kinetics Steady state kinetics Michaelis Menten equations and parameters Enzyme Kinetics Enzyme kinetics implies characterizing
More information2-4 Chemical Reactions and Enzymes
2-4 Chemical Reactions and Enzymes Living things, as you have seen, are made up of chemical compounds-some simple and some complex. But chemistry isn t just what life is made of-chemistry is also what
More informationA First Course on Kinetics and Reaction Engineering Example 9.4
Example 9.4 Problem Purpose This problem illustrates the use of a Lineweaver-Burk plot to determine the values of the constants in a Michaelis-Menten rate expression. Problem Statement Suppose the enzyme-catalyzed
More informationTopic 4 Correlation and Regression. Transformed Variables
Topic 4 Correlation and Regression Transformed Variables 1 / 13 Outline Worldwide Oil Production Lineweaver-Burke double reciprocal plot 2 / 13 Worldwide Oil Production Example. The modern history of petroleum
More informationDiscussion Exercise 5: Analyzing Graphical Data
Discussion Exercise 5: Analyzing Graphical Data Skill 1: Use axis labels to describe a phenomenon as a function of a variable Some value y may be described as a function of some variable x and used to
More informationLecture 13: Data Analysis and Interpretation of the Michaelis-Menten Parameters
Biological Chemistry Laboratory Biology 3515/Chemistry 3515 Spring 2019 Lecture 13: Data Analysis and Interpretation of the Michaelis-Menten Parameters 19 February 2019 c David P. Goldenberg University
More informationEnzyme Kinetics: The study of reaction rates. For each very short segment dt of the reaction: V k 1 [S]
Enzyme Kinetics: The study of reaction rates. For the one-way st -order reaction: S the rate of reaction (V) is: V P [ P] moles / L t sec For each very short segment dt of the reaction: d[ P] d[ S] V dt
More information3. Organic Geochemisty Organic Chemistry is the chemistry... of Carbon -Morrison and Boyd
3. Organic Geochemisty Organic Chemistry is the chemistry... of Carbon -Morrison and Boyd Definitions, Nomenclature Organic Compound Solubility Octanol-Water Partition Coefficient Organic Compound Sorption
More informationENZYME SCIENCE AND ENGINEERING PROF. SUBHASH CHAND DEPARTMENT OF BIOCHEMICAL ENGINEERING AND BIOTECHNOLOGY IIT DELHI LECTURE 6
ENZYME SCIENCE AND ENGINEERING PROF. SUBHASH CHAND DEPARTMENT OF BIOCHEMICAL ENGINEERING AND BIOTECHNOLOGY IIT DELHI LECTURE 6 KINETICS OF ENZYME CATALYSED REACTIONS Having understood the chemical and
More informationBiochemistry 3100 Sample Problems Binding proteins, Kinetics & Catalysis
(1) Draw an approximate denaturation curve for a typical blood protein (eg myoglobin) as a function of ph. (2) Myoglobin is a simple, single subunit binding protein that has an oxygen storage function
More informationAli Yaghi. Gumana Ghashan. Mamoun Ahram
21 Ali Yaghi Gumana Ghashan Mamoun Ahram Kinetics The study of Kinetics deals with the rates of chemical reactions. Chemical kinetics is the study of the rate of chemical reactions. For the reaction (A
More informationElementary reactions. stoichiometry = mechanism (Cl. + H 2 HCl + H. ) 2 NO 2 ; radioactive decay;
Elementary reactions 1/21 stoichiometry = mechanism (Cl. + H 2 HCl + H. ) monomolecular reactions (decay: N 2 O 4 some isomerisations) 2 NO 2 ; radioactive decay; bimolecular reactions (collision; most
More informationBiochemistry Enzyme kinetics
1 Description of Module Subject Name Paper Name Module Name/Title Enzyme Kinetics Dr. Vijaya Khader Dr. MC Varadaraj 2 1. Objectives 2. Enzymes as biological catalyst 3. Enzyme Catalysis 4. Understanding
More informationES/RP 531 Fundamentals of Environmental Toxicology Fall 2005
October 31, 2005 Lecture 19: Chemical Mixtures & Interactions (Dose-Response Assessment 2) I. Living in a Chemical Soup A. Although the vast majority of risk assessments are conducted on chemicals one
More informationOutline of presentation
// Fate and Examples from research projects -8 Effects of Dispersed Oil Workshop Anchorage, March 8 Alf G. Melbye Research Manager Fate and Effects Marine Environmental Chemistry SINTEF Materials and Chemistry
More informationBIOCHEMISTRY - CLUTCH REVIEW 2.
!! www.clutchprep.com CONCEPT: BINDING AFFINITY Protein-ligand binding is reversible, like a chemical equilibrium [S] substrate concentration [E] enzyme concentration Ligands bind to proteins via the same
More informationChemical Kinetics. Kinetics is the study of how fast chemical reactions occur. There are 4 important factors which affect rates of reactions:
Chemical Kinetics Kinetics is the study of how fast chemical reactions occur. There are 4 important factors which affect rates of reactions: reactant concentration temperature action of catalysts surface
More informationChapter 14. Chemical Kinetics
Chapter 14. Chemical Kinetics 14.1 Factors that Affect Reaction Rates The speed at which a chemical reaction occurs is the reaction rate. Chemical kinetics is the study of how fast chemical reactions occur.
More informationThe Kinetics of Lead Transfer in the Human Body
The Kinetics of Lead Transfer in the Human Body Miyuki Shimokawa May 20, 2000 Abstract The kinetics of lead in the human body are described by a system of first order differential equations. Parameters
More informationAssessment Schedule 2017 Biology: Demonstrate understanding of life processes at the cellular level (91156)
NCEA Level 2 Biology (91156) 2017 page 1 of 6 Assessment Schedule 2017 Biology: Demonstrate understanding of life processes at the cellular level (91156) Assessment Criteria Achievement Achievement with
More informationChemical Reactions and Enzymes. (Pages 49-59)
Chemical Reactions and Enzymes (Pages 49-59) Chemical Reactions Chemistry of Life Not just what life is made of. What life does! Chemical Reactions Chemistry of Life Not just what life is made of. What
More informationBiochemistry. Lecture 8 Enzyme Kinetics
Biochemistry Lecture 8 Enzyme Kinetics Why Enzymes? igher reaction rates Greater reaction specificity Milder reaction conditions Capacity for regulation C - - C N 2 - C N 2 - C - C Chorismate mutase -
More informationLecture 27. Transition States and Enzyme Catalysis
Lecture 27 Transition States and Enzyme Catalysis Reading for Today: Chapter 15 sections B and C Chapter 16 next two lectures 4/8/16 1 Pop Question 9 Binding data for your thesis protein (YTP), binding
More informationAffinity labels for studying enzyme active sites. Irreversible Enzyme Inhibition. Inhibition of serine protease with DFP
Irreversible Enzyme Inhibition Irreversible inhibitors form stable covalent bonds with the enzyme (e.g. alkylation or acylation of an active site side chain) There are many naturally-occurring and synthetic
More informationSECTION 9: Kinetics. Chapter 12 in Chang Text
SECTION 9: Kinetics Chapter 12 in Chang Text Outline for Section 9 Part I 9.1. Kinetics in Pharmaceutical Science 9.2. Rates of Reactions 9.3. Reaction Order: Zero-Order, 1 st Order 9.1. Chemical Kinetics
More informationLecture 11: Enzymes: Kinetics [PDF] Reading: Berg, Tymoczko & Stryer, Chapter 8, pp
Lecture 11: Enzymes: Kinetics [PDF] Reading: Berg, Tymoczko & Stryer, Chapter 8, pp. 216-225 Updated on: 2/4/07 at 9:00 pm Key Concepts Kinetics is the study of reaction rates. Study of enzyme kinetics
More informationBiochemical Kinetics: the science that studies rates of chemical reactions An example is the reaction (A P), The velocity, v, or rate, of the
Biochemical Kinetics: the science that studies rates of chemical reactions An example is the reaction (A P), The velocity, v, or rate, of the reaction A P is the amount of P formed or the amount of A consumed
More informationCase study: Category consistency assessment in Toolbox for a list of Cyclic unsaturated hydrocarbons with respect to repeated dose toxicity.
Case study: Category consistency assessment in Toolbox for a list of Cyclic unsaturated hydrocarbons with respect to repeated dose toxicity. 1. Introduction The aim of this case study is to demonstrate
More informationChemistry 112 Final Exam, Part II February 16, 2005
Name KEY. (35 points) Consider the reaction A + B + C + D + E + F Æ P, which has a rate law of the following form: d[p]/dt = k[a]a[b]b[c]c[d]d[e]e[f]f The data sets given or displayed below were obtained
More informationCatalase Fluorometric/Colorimetric Assay Kit
Catalase Fluorometric/Colorimetric Assay Kit Catalog No. KM0044 Detection and Quantification of Catalase Concentrations in Biological Samples. Research Purposes Only. Not Intended for Diagnostic or Clinical
More informationEnzyme Kinetics. Jonathan Gent and Douglas Saucedo May 24, 2002
Enzyme Kinetics Jonathan Gent and Douglas Saucedo May 24, 2002 Abstract This paper consists of a mathematical derivation of the Michaelis-Menten equation, which models the rate of reaction of certain enzymatic
More informationA Discreet Compartmental Model for Lead Metabolism in the Human Body
A Discreet ompartmental Model for Lead Metabolism in the Human ody Frederika E. Steyn, Stephan V. Joubert and harlotta E. oetzee Tshwane University of Technology Abstract A real-life example of a mathematical
More information2013 W. H. Freeman and Company. 6 Enzymes
2013 W. H. Freeman and Company 6 Enzymes CHAPTER 6 Enzymes Key topics about enzyme function: Physiological significance of enzymes Origin of catalytic power of enzymes Chemical mechanisms of catalysis
More informationMeasurement of Enzyme Activity - ALP Activity (ALP: Alkaline phosphatase)
Measurement of Enzyme Activity - ALP Activity (ALP: Alkaline phosphatase) Measurement and analysis of enzyme activity is often used in the field of life science such as medicines and foods to investigate
More informationIt is generally believed that the catalytic reactions occur in at least two steps.
Lecture 16 MECHANISM OF ENZYME ACTION A chemical reaction such as A ----> P takes place because a certain fraction of the substrate possesses enough energy to attain an activated condition called the transition
More informationENZYMES. by: Dr. Hadi Mozafari
ENZYMES by: Dr. Hadi Mozafari 1 Specifications Often are Polymers Have a protein structures Enzymes are the biochemical reactions Katalyzers Enzymes are Simple & Complex compounds 2 Enzymatic Reactions
More informationENZYME KINETICS. Medical Biochemistry, Lecture 24
ENZYME KINETICS Medical Biochemistry, Lecture 24 Lecture 24, Outline Michaelis-Menten kinetics Interpretations and uses of the Michaelis- Menten equation Enzyme inhibitors: types and kinetics Enzyme Kinetics
More informationLab 3: Soluble Enzyme Kinetics
Taylor, A. Winter 2012 Lab 3: Soluble Enzyme Kinetics Introduction This lab will reinforce concepts addressed in BIOEN 335, Biotransport II. In particular, we will focus on enzyme kinetics. You have learned
More informationMichaelis-Menten Kinetics
Michaelis-Menten Kinetics Two early 20th century scientists, Leonor Michaelis and Maud Leonora Menten, proposed the model known as Michaelis-Menten Kinetics to account for enzymatic dynamics. The model
More informationFST 123 Problem Set 3 Spring, V o at [S] 0 = 10 mm (mm/min)
FST 23 Problem Set 3 Spring, 2009 Name. A student needed to know the activity versus ph profile for an enzyme that he was going to use in a later application. He collected the appropriate data and determined
More information