:? DNA Barcodes: A New Tool for Biological Identifications? 1

Transcription

1 ... 40(2) (2555) KKU Sci. J. 40(2) (2012) :? DNA Barcodes: A New Tool for Biological Identifications? 1 ABSTRACT DNA barcode is a new concept that applies gene or universal DNA sequences differences to support classification of organisms. At present, there has been collaboration between various institutions around the world to create a database of DNA barcode of life. DNA barcode can be applied to the biological diversity in a variety of different dimensions. However, the application of DNA barcodes still has several limitations, for example universal DNA sequences or standardized nucleotide sequences, acquisition of a life and limited of database. In conclusion, DNA barcode is just a tool that assists to support the existence of life which necessary come together with other methods to identify biological specimens are more reliable. 1 vanijajiva@pnru.ac.th 10220

2 397 : Keywords: DNA barcode, Biodiversity, Species identification (biodiversity) (taxonomy) (classification) (identification) (nomenclature) (cryptic species) (morphology) Carolus Linnaeus (binomial nomenclature) (Kress et al., 2005).. Hebert et al. 100 (May, 1988; Blaxter, 2004; Vernooy et al., 2010) (taxonomist) plasticity) (Jinbo et al., 2011) (phenotypic (character) (Hebert and Gregory, 2005; Schindel and Miller, 2005; Valentini et al, 2008)

3 398 KKU Science Journal Volume 40 Number 2 Review? (barcode) Valentini et al (2008) Hebert et al (2003) Hebert et al (2003) (nucleotide) (gene) Cytochrome c oxidase subunit I ( ) (base pair: bp) (mitochondria DNA; mtdna) (order) Lepidoptera 100% Arnot.. Hebert et al (2003) Biological identifications through DNA barcodes ( 1).. Consortium for the Barcode of Life (CBOL) The Barcode of Life Data System (BOLD) ( (tag) 1, International Barcode of Life project (ib OL) ( 500, 100, (International Barcode of Life, 2011)

4 399 1 ( DNA Barcode Web of Science) (DNA sequencing) (Polymerase Chain Reaction: PCR) Dasmahapatra and Mallet ( 2006) (Cho et al., 2004) (Fish-Bol; Ward et al., 2009), (ABBI; Herbert et al., 2004), (Mammalia Barcode of Life), (MarBol) Lepidoptera 50, 30% (Silva-Brandão et al., 2009; Jinbo et al., 2011) (chloroplast DNA; cpdna) CBOL Plant Working Group (2009) 907 ribulose bisphosphate carboxylase ( ) maturase K ( )

5 400 KKU Science Journal Volume 40 Number 2 Review Nuclear Ribosomal Internal Transcribed Spacer (nrits) (Kress et al., 2005; Kress and Erickson, 2007) 2004) (Hawksworth, (Frézal and Leblois, 2008; Siddall et al., 2009) Fungi All Barcoding ( nrits Zhao et al., 2011) (bacteria) (Seifert, 2009; (microorganism) (protists) - 1 (Peter, 2007 (Piganeau et al., 2011) Scicluna et al. (2006) 18S ribosomal DNA (18s rdna) (GMO: Genetic modified organism) Sogin et al. (2006) Piganeau et al. (2011) 18s rdna 2011) - (Zhu et al., 2008; Staudacher et al., (<1

6 401 (Cywinska et al., 2006; Alcaide et al., 2009) - tion) (interspecific variation) (intraspecific varia 2009) (Valentini et al., (endanger species) (Dubey et al., 2011; Bucklin et al., 2011; Muellner et al., 2011) (Kress and Erickson, 2008; Von Crautlein et al., 2011) (voucher specimen) et al., 2011; Pilgrim et al., 2011) (Sweeney 2011) (Hunter et al., 2008; Jinbo et al.,

7 402 KKU Science Journal Volume 40 Number 2 Review

8 403 (genetic without phonetic) (Vilgalys, 2003) (Kress and Erickson, 2008; Jinbo et al., 2011) 2009) (Godfray et al., 2007; Zahariev et al., al. (2004) Hebert et

9 404 KKU Science Journal Volume 40 Number 2 Review Alcaide, M., Rico, C., Ruiz, S., Soriguer, R., Munoz, J. and Figuerola, J. (2009). Disentangling Vector-Borne Trans mission Networks: A Universal DNA Barcoding Method to Identify Vertebrate Hosts from Arthropod Bloodmeal. PLOS ONE 4: e7092. Arnot, D.E., Roper, C. and Bayoumi, R.A. (1993). Digital codes from hypervariable tandemly repeated DNA sequences in the circumsporozoite gene can geneti cally barcode isolates. Molecular Biochemistry and Parasitology 61: Blaxter, M.L. (2004). The promise of a DNA taxonomy. Philosophical Transactions of the Royal Society B Biological Sciences 359: Bucklin, A., Steinke, D. and Blanco-Bercial L. (2011). DNA Barcoding of Marine Metazoa. Annual Review of Marine Science 3: CBOL Plant Working Group (2009). A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 106: Cho, Y., J., Mower, P., Qiu, Y.-L. and Palmer J. D. (2004) Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants. Proc. Natl. Acad. Sci. USA. 101: Cywinska, A., Hunter, F. F. and Hebert, P. D. N. (2006). Identifying Canadian mosquito species through DNA barcodes. Medical and Veterinary Entomology 20: Dasmahapatra, K.K. and Mallet, J. (2006). DNA barcodes: recent successes and future prospects. Heredity 97: Dubey, B., Meganathan, P. R. and Haque, I. (2011). DNA mini-barcoding: An approach for forensic identification of some endangered Indian snake species. Forensic Science inter national-genetic 5: Frézal, L, and Leblois, R. (2008) Four years of DNA barcoding: current advances and prospects. Infection, Genetics and Evolution 8:

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11 406 KKU Science Journal Volume 40 Number 2 Review DNA barcoding into a large-scale bio monitoring program: opportunities and pitfalls. Journal of the north American Benthological Society 30: Schindel, D.E. and Miller, S.E. (2005). DNA barcoding a useful tool for taxono mists. Nature 435: 17. Scicluna, S.M., Tawari, B. and Clark, C.G. (2006). DNA barcoding of Blastocystis. Protist 157: Seifert, K.A. (2009). Progress towards DNA barcoding of fungi. Molecular Ecology Resources 9: Siddall, M.E., Fontanella, F.M., Watson, S.C., Kvist, S. and Eresus, C. (2009). Barcoding bamboozled by bacteria: convergence to Metazoan Mitochon drial primer targets by marine microbes. Systematics Biology 58: Silva-Brandão K.L., Lyra M.L. and Freitas, A.V.L. (2009). Barcoding Lepidoptera: current situation and perspectives on the usefulness of a contentious tech nique. Neotropical Entomology 38: Sogin, M. L., Morrison, H. G. Huber,, J. A., Welch, D. M., Huse, S. M., Neal, P. R., Arrieta, J. M. and Herndl, G. J. (2006). Microbial diversity in the deep sea and the underexplored rare biosphere. Proc. Natl. Acad. Sci. USA 103: Staudacher, K., Pitterl, P., Furlan, L., Cate, P. C. and Traugott, M. (2011). PCR-based species identification of Agriotes larvae. Bulletin of entomological research 101: Sweeney, B.W., Battle, J.M., Jackson, J.K. and Dapkey, T. (2011). Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality? Journal of the north American benthological society 30: Valentini, A., Pompanon, F., and Taberlet, P. (2008). DNA barcoding for ecologists Trends in Ecology and Evolution 24: Vernooy, R., Haribabu, E., Muller, M. R., Vogel, J. H. and Hebert, P. D. N. (2010). Barcoding Life to Conserve Biological Diversity: Beyond the Taxonomic Imperative. Plos Biol 8: e Vilgalys, R. (2003). Taxonomic misidentification in public DNAdatabases. New Phyto logist 160:4 5. Von Crautlein, M, Korpelainen H, Pietilainen M, Rikkinen J. (2011). DNA barcoding: a tool for improved taxon identification and detection of species diversity. Biodiversity and Conservation 2:

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