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T H E J O U R N A L O F C E L L B I O L O G Y Supplemental material Eisner et al., http://www.jcb.org/cgi/content/full/jcb.201312066/dc1 Figure S1. Mitochondrial continuity in adult skeletal muscle. (A) Front and back views of 3D reconstruction of the distribution of photoactivated mtpa-gfp in an FDB fiber show complex interconnected mitochondria with examples of transversal and longitudinal continuity. Both longitudinal and transversal matrix connections are illustrated; several connectors appear as narrowing intermitochondrial domains (arrows). Bar, 2 µm. (B) Evaluation of mtpa-gfp diffusion kinetics in individual mitochondria of different elongated morphology, outside of the photoactivated area (examples from a single representative experiment out of three repeats). Left panel and plot below (blue traces): example of an elongated mitochondrion with apparent constant diameter and fast mtpa-gfp diffusion kinetics reflected in the essentially synchronous increase in PA-GFP fluorescence at points of different distance (1, 2, and 3) from the photoactivation area. Top right panel and bottom center plot (red traces): an elongated mitochondrion showing a narrowing domain displays slow mtpa- GFP diffusion kinetics. Bottom right: the plot shows the diverse diffusion kinetics of eight longitudinal oriented organelles (half-time of fluorescence increase vs. distance from the edge of the photoactivation area and linear fits to the data points). Mitochondrial fusion in skeletal muscle Eisner et al. S1

Figure S2. Diversity of mitochondrial fusion events in adult FDB fibers. (A) Example of a single mitochondrion to network fusion event. Mitochondrion 1, located in the immediate vicinity of the photoactivation area (left; bar, 2.5 µm) fuses with mitochondrion 2, a large complex mitochondrion that displays extensive branching in both longitudinal and transversal directions. The graph shows the ratio of mtpa-gfp/mtdsred at different time points for mitochondrion 1 (PA-GFP donor) and 2 (acceptor) to illustrate the complementary redistribution of the two fluorescent proteins. (B) Example of a transversal fusion event. Mitochondrion 1 adjacent to the photoactivation area (top; bar, 2.5 µm) fuses with mitochondrion 2; mtpa-gfp diffuses in transversal direction, unveiling a new interconnected organelle (highlighted by green outline). Graph shows mtpa-gfp/mtdsred ratio for each organelle. S2

Figure S3. Short-term expression of Opa1 G300E does not alter trains of [Ca 2+ ] c transients in skeletal muscle fibers. FDB muscles from control animals were cotransfected with mtdsred and mock or G300E Opa1 cdna. After 7 10 d, fibers were isolated and loaded with Fura2. mtdsred-positive fibers that responded to single electric pulses were picked for each experiment. Fibers were challenged by tetanic electrical stimulation. Top panel displays representative [Ca 2+ ] c transients. Bottom bar charts show from left to right: [Ca 2+ ] c levels prees, max amplitude (peaks 1 10), evaluation of the [Ca 2+ ] c transients amplitude decay, for the time period indicated by brackets above the representative traces (([mean peaks 1 10] [mean peaks 30 40])/ [mean peaks 1 10] 100), and irregularity in amplitude of the [Ca 2+ ] c transients ([max min]/[max]), among peaks 1 100 (four or more independent experiments, the number of fibers is shown in the bar charts). Mitochondrial fusion in skeletal muscle Eisner et al. S3

Figure S4. Representative NADH transient induced by repetitive tetanic stimulation of a FDB fiber that does not express cytorcamp. This experiment was completed with n = 3 fibers. The fiber responded to each tetanus with slight contraction that did not affect the NADH autofluorescence quantification. AcAc, acetoacetate; Rot, rotenone. S4

Figure S5. TEM representative images of longitudinal sections of FDB muscles from control and EtOH-fed paired rats. Top: 1,650 ; middle: 21,000 ; bottom: digital zoom on triads and associated mitochondria from 21,000 images. Mitochondrial fusion in skeletal muscle Eisner et al. S5

Video 1. Mitochondrial matrix dynamics in an adult FDB fiber. Single fiber was isolated from rat FDB skeletal muscle transfected in vivo with mtdsred and mtpa-gfp. Four regions of 5 5 µm 2 were exposed to 2P photoactivation and time-lapse imaged for a total time of 8 min using a laser-scanning confocal microscope (LSM780MP; Carl Zeiss). Frames were taken every 4 s. Video 2. Mitochondrial matrix dynamics in a rat myotube. FDB fibers plated onto polylysine-coated (Sigma-Aldrich) and laminin-coated (Invitrogen) coverslips (100 µg/ml each; 20 coverslips/rat). Satellite cells were infected with the adenoviruses AdmtDsRed and AdmtPA-GFP and were allowed to differentiate to myotubes. Two regions of 5 5 µm 2 were exposed to 2P photoactivation and recorded for 8 min using a laser-scanning confocal microscope (LSM780MP; Carl Zeiss). Frames were taken every 4 s. S6