Welcome/Introduction

Size: px
Start display at page:

Download "Welcome/Introduction"

Transcription

1 Durham University Chemistry Department Welcome/Introduction Dr John S.O. Evans Durham, January 2007 Durham Welcome Health and Safety/Fire procedures Course will be lectures followed by hands on practical Emphasis on understanding not learning a package Please submit pre-course questionnaire with name/pseudonym 1

2 Teachers/Tutors Jeremy Cockcroft UCL/Birkbeck John Evans Durham Chemistry Ivana Evans Durham Chemistry Will Bisson UCL Sarah Lister Durham Graham Stinton Durham Lars Peters Durham Thanks Tutors for time Sponsors for cash Alan Coelho for Topas software Bob von Dreele/Alan Larson for gsas Juan Rodriguez-Carvajal for fullprof Durham University 2

3 Legalities By using ITS account you re agreeing to University policy on use of the web You each have your own login id. Don t change the password!!! Don t try stealing the software! It won t work anywhere else plus is time limited! All timetabled sessions are compulsory! Tomorrow Morning First lecture will be in CG93 (Scarborough lecture theatre) Follow somebody! Who doesn t know how to use solver in excel? 3

4 Information in a Powder Pattern 1. Peak positions determined by size, shape, symmetry of unit cell internal structure 3. Peak widths influenced by size/strain of crystallites - microstructure. 2θ 2. Peak Intensities determined by where atoms sit in unit cell internal structure 45,000 40,000 Counts 35,000 30,000 25,000 20,000 15, ,000 5, θ - degrees Timetable 09:00 09:45 11:00 11:30 13:00 14:00 14:30 16:00 16:30 18:00 18:30 19:00 20:00 Sunday Monday Tuesday Wednesday 3. Introduction to powder diffraction 8.Structure factors, peak intensities 13. Question and Answer session and data collection. and Rietveld refinement 4. jedit/topas academic/rietveld 9. Pawley and Rietveld refinement 14. Spot the errors refinement Coffee Coffee Coffee 5. Peak positions - indexing/cell refinement exercises 10. Intro to gsas/fullprof then examples 15. Free problems then wrap up Lunch - Musgrave Room Lunch - Musgrave Room Departure 6. Peak shapes lecture 7. Peak shape tutorial 11. Restraints, Constraints, Rigid Bodies and Structure Solution 12. Structure solution and rigid body refinements Registration in Trevelyan Tea Tea 7. Peak shape tutorial 12. Structure solution and rigid body refinements Dinner - Trevelyan Close Close 0.Welcome/Introduction 1.Symmetry lecture Dinner - Trevelyan Dinner - Trevelyan 2. Symmetry bar quiz Pub Quiz Free evening Lecture slot Food/Drink Problems/Workshop 4

5 Durham University Chemistry Department Introduction to Software/Problems Dr John S.O. Evans Durham, January 2007 Durham Topas Academic Useful for teaching as can input equations, see everything in file very quickly Powder and single crystal X-ray, neutron Constant λ, time of flight, energy dispersive Structural models, Pawley fitting, peak fitting Restraints, constraints, penalty only fitting Multi phase, multi histogram Non crystallographic applications Simulated Annealing for structure solution 5

6 Acknowledgement Alan Coelho (Topas/Topas-Academic author) s Topas Graphics Grid Run Zoom Plot 6

7 Software Interface Command file driven for flexibility/speed jedit free customisable java editor Interacts directly with software Helps with formatting jedit interface 7

8 Topas/jedit demo Refining Parameters str cell params for an orthorhombic structure a b c

9 Refining Parameters str cell params for an orthorhombic structure Refining Parameters Using names str cell params for an orthorhombic structure a lpa b lpb c lpc

10 Refining Parameters Using Names str cell params for a cubic structure a lpa b lpa c lpa str cell params for a cubic structure Cubic(@ ) Fixing Parameters Using! str cell params for a cubic structure a!lpa b!lpa c!lpa N.B. jedit column editting hold down ctrl key and type all! s at once 10

11 Refining Parameters - Macros Zero_Error(, 0) fixed zero point 0.013) refine zero point Zero_Error(!zero, 0) Zero_Error( zero, 0.013) fixed zero point refined zero point User Defined Equations topas zero point correction in input file prm zero 0.01 th2_offset = zero; topas zero point correction in input file prm zero 0.01 prm corr prm corr th2_offset = corr2*x^2 + thcorr*x + zero; 11

12 User Defined Equations silly(?) example of topas equations prm zero 0.01 prm var prm!date 21 st of April th2_offset = zero + var1 * date; User Defined Equations Flexible system for defining your own equations Fully programmable program e.g. gsas vs topas: zero 0.01 y shft y shft = 3600*height/π*radius 2θ obs = 2θ calc + zero 2*shft*Cos(θ) topas height/zero point correction in input file prm zero 0.01 prm height 0.15 th2_offset = zero - 2*height*Cos(Th)/radius; 12

13 Simulated Annealing Flexible Simulated Annealing approach for complex structures: topas annealing expression in input file val_on_continue = Val + Val * Rand(-0.1,0.1); val_on_continue = ideal_coord + Rand(-0.1,0.1); Flexible definition of restraints, constraints, rigid bodies, etc Running Tutorial Problems Session 4 You should all be able to log in to computer Work on the j: drive where you have full read/write privileges Use folder j:\school_work Run jedit from icon on desktop Launch topas-academic from inside jedit Access tutorials 13

14 Initial Software Setup First time you log in you ll need to double click on: I:\licence\rietveld\rietveld_setup.bat Wait a few minutes for software to be copied Use desktop icons created [For fullprof will need to double click on rietveld_setup.bat each time you log in] Session 5 Peak Positions 1. Peak positions determined by size, shape, symmetry of unit cell internal structure 3. Peak widths influenced by size/strain of crystallites - microstructure. 2θ 2. Peak Intensities determined by where atoms sit in unit cell internal structure 45,000 40,000 Counts 35,000 30,000 25,000 20,000 15, ,000 5, θ - degrees

15 Session 5 Peak Positions Bragg s Law: nλ=2dsinθ d-spacing formulae Triclinic [ ] = h b c sin α + k a c sin β + l a b sin γ + 2hkabc ( cosα cos β cosγ ) + 2kla bc( cos β cosγ cosα ) + 2hlab c( cosα cosγ cos β ) 2 2 d V Cubic 1 d 2 = h 2 + k a l 2 Bragg s Law: nλ=2dsinθ 15

16 Indexing Tutorials Session 5 Folders should contain print outs of powder patterns for tutorials 4 and 5 Try to index powder pattern for tutorial 4 by hand/with excel Use excel to refine cell parameter of diffraction pattern for tutorial 5 Lin (Counts) dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= Lin (Counts) dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= Theta dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= dsp= , 2th= Theta Durham University Chemistry Department Session 6 Peak Shapes Dr John S.O. Evans Durham, January 2007 Durham 16

17 Session 6 Peak Shapes 1. Peak positions determined by size, shape, symmetry of unit cell internal structure 3. Peak widths influenced by size/strain of crystallites - microstructure. 2θ 2. Peak Intensities determined by where atoms sit in unit cell internal structure 45,000 40,000 Counts 35,000 30,000 25,000 20,000 15, ,000 5, θ - degrees Peak Shapes View 1 Peak shapes are a nuisance. For Rietveld refinement we only fit peaks to get an good agreement between y obs and y calc to give us an accurate structural model We re therefore not interested in the mathematical details of the peak shape model Failure to fit the finest details of the peak shape (e.g. tails of the peaks) aren t very important 17

18 Peak Shapes View 2 Peak shapes in a powder diffraction pattern result from a combination of instrumental effects (the optics you use) and sample effects (size/strain) There is a wealth of fascinating information contained in experimental peak shapes Peak Shapes 3 Approaches Empirical Peak Shapes Used by most Rietveld packages Whatever function fits the data is good Fundamental Parameters Instrumental contribution to peak shape Sample contribution to peak shape Excellent fits with very few parameters Semi Empirical Define instrument with empirical function Convolute with sample contribution 18

19 Gaussian/Lorentzian Functions x fwhm η 2θ-2θ hkl where 2θ hkl is position of reflection full width at half maximum mixing parameter for composite function Gaussian vs Lorentzian Lorentz sharp near maximum but has long tails away from peak Gauss smaller tails but rounded maximum PV mixes two functions Mixing η 0 to 1 19

20 Gaussian, Lorentzian, Pseudo Voigt Counts Counts 7,500 7,000 6,500 6,000 5,500 5,000 4,500 4,000 3,500 3,000 2,500 2,000 1,500 1, ,000-1, ,500 7,000 6,500 6,000 5,500 5,000 4,500 2Th Degrees Gauss wrp=30.5% Lorentz wrp=19.9% 4,000 3,500 3,000 2,500 2,000 1,500 1, , Th Degrees 7,500 7,000 6,500 6,000 Counts 5,500 5,000 4,500 4,000 3,500 3,000 2,500 2,000 1,500 1, , Th Degrees η=0.68 wrp=17.6% 57.8 Individual peak fitting on simulated Y 2 O 3 data 3/2/ fwhm vs 2θ 2 Gauss: ( ) 1 2 fwhm = U tan θ + V tanθ + W Lorentz: X fwhm = + Y cosθ tanθ U, V, W, X, Y Refineable Parameters fwhm theta 20

21 GSAS TCHZ type function Modified Thompson-Cox-Hastings pseudo- Voigt GSAS/Topas topas TCHZ peak shape function TCHZ_Peak_Type( pku, `,pkv, `, pkw, `,!pkx, , pky, `,!pkz, ) 21

22 Look in topas.log to see what s happening TCHZ_Peak_Type(pku, `,pkv, `,pkw, `,pkx, `,pky, `,pkz, `) prm pku ` min = Max(-1, Val-.1); max = Min(2, Val+.1); del 1.0e-4 prm pkv ` min = Max(-1, Val-.1); max = Min(2, Val+.1); del 1.0e-4 prm pkw ` min = Max(- 1, Val-.1); max = Min(2, Val+.1); del 1.0e-4 prm pkx min = Max(-1, Val-.1); max = Min(2, Val+.1); del 1.0e-4 prm pky ` min = Max(0.0001, Val-.1); max = Min(2, Val+.1); del 1.0e-4 prm pkz min = Max(0.0001, Val-.1); max = Min(2, Val+.1); del 1.0e-4 peak_type pv pv_lor = (((pky) Tan(Th) + (pkz) /Cos(Th)) /( ( Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^4 ((pky) Tan(Th) + (pkz) /Cos(Th)) Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^3 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^2 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) ) ((pky) Tan(Th) + (pkz) /Cos(Th))^4 + ((pky) Tan(Th) + (pkz) /Cos(Th))^5 )^0.2 )) (((pky) Tan(Th) + (pkz) /Cos(Th)) /( ( Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^4 ((pky) Tan(Th) + (pkz) /Cos(Th)) Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^3 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^2 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) ) ((pky) Tan(Th) + (pkz) /Cos(Th))^4 + ((pky) Tan(Th) + (pkz) /Cos(Th))^5 )^0.2 ))^ (((pky) Tan(Th) + (pkz) /Cos(Th)) /( ( Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^4 ((pky) Tan(Th) + (pkz) /Cos(Th)) Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^3 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^2 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) ) ((pky) Tan(Th) + (pkz) /Cos(Th))^4 + ((pky) Tan(Th) + (pkz) /Cos(Th))^5 )^0.2 ))^3; pv_fwhm = ( ( Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^4 ((pky) Tan(Th) + (pkz) /Cos(Th)) Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^3 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) )^2 ((pky) Tan(Th) + (pkz) /Cos(Th))^ Sqrt( Sqrt( ((pku) Tan(Th)^2 + (pkv) Tan(Th) + (pkw) + (pkx) /Cos(Th)^2)^2 ) ) ((pky) Tan(Th) + (pkz) /Cos(Th))^4 + ((pky) Tan(Th) + (pkz) /Cos(Th))^5 )^0.2 ); Fundamental Parameters Approach Peak Widths depend on X-ray source Instrument Sample Convolution or folding blends one function with another Y ( 2θ ) = ( Source Instrument) Sample (or empirical instrumental function) f () t g() t = f ( τ ) g( t τ ) dτ = g( τ ) f ( t τ d )τ 22

23 Convolution Approach ( Source Instrument) Sample = Y ( 2θ ) Contributions to peak shape 23

24 Sample Contributions - Size Scherrer formula β full width half maximum; k a constant L Vol is volume weighted mean column height; only for cubic crystals and h00 reflections is it equal to L 0 in figures below Sample Contributions - Strain d-spacings of d+ d and d- d e 0 = d/d Assume Braggs law gives different 2θ for different d-spacings 24

25 X-ray Particle Size from peak shape Intensity Size: 324(110) nm Strain: (40) Size: 20.4(8) nm Strain: 0.138(7) Broadening /cos(th) 3.5 tan(th) size strain theta theta Size broadening broad over whole 2-theta range Strain broadening narrow at low 2-theta Sample Contributions - Caveat Be careful! See links in tutorial 25

26 Source Profile N.B. source profile only much sharper then observed peak Source Equatorial N.B. peak now considerably broadened by instrument 26

27 Source Equatorial Axial N.B. peak now has asymmetry Source Equatorial Axial Sample N.B. peak maximum not at calculate 2θ 27

28 Topas Language Radius(217) diffractometer radius Divergence(1) divergence slit deg axial_conv filament_length 12 sample_length 15 receiving_slit_length 12 primary_soller_angle 5.1 secondary_soller_angle 5 Slit_Width(0.1) receiving slit CS_L(size_lor, ) size term nm Strain_G(strain_g, ) strain term The tutorial (hard!) Take an experimental data set Determine fwhm for all peaks and plot in excel Use excel to fit fwhm=f(2θ) functions fwhm = U tan 2 θ + V tanθ + W fwhm = U 2θ 2 + V 2θ + W Try these same functions in a Rietveld refinement in topas Try a fundamental parameters approach in topas and get a better fit with fewer parameters fwhm theta 28

29 Semi Empirical Size/Strain See: tutorial 9 - Size/Strain Analysis: Shows how size/strain can be determined in topas using the CeO 2 round robin data and an empirical instrumental function tutorial 10 determining the size of nanoparticles Durham University Chemistry Department Session 9 Pawley/Rietveld Problems Dr John S.O. Evans Durham, January 2007 Durham 29

30 Tomorrow s Programme Wednesday morning open questions session Either submit questions on paper before hand or ask on the morning Will limit to minutes Spot the errors tutorials Deliberate errors in data for trouble shooting Free problems/play with your data Wrap up session (if required) Today s Programme Next workshop tutorials After coffee Gsas demonstration Workshop tutorials Split into fullprof-bias room (on the right)? After lunch intro to problems lecture Restraints/rigid bodies Structure solution problems (simple) 30

31 Rietveld/Pawley Problems Tutorial 1 TiO 2 Rietveld Tutorial 2 TiO 2 Pawley Tutorial 3 ZrW 2 O 8 X-ray/neutron/neutron time of flight Tutorial 10.5 Jeremy s PbSO 4 data in.xye format for you to try in topas Gsas 2 (later) Jeremy s PbSO 4 data Tutorial 11 Combined X-ray and neutron refinement (also gsas3/gsas4) Tutorial 12 Multiphase Rietveld refinement Durham University Chemistry Department Session 10 Other Software Dr John S.O. Evans Durham, January 2007 Durham 31

32 GSAS General Structural Analysis System Bob Von Dreele/Alan Larson Very widely used Magnetic refinements Run via expedt/expgui Actually has a.exp file (like.inp file) in background Fullprof Suite Juan Rodriguez-Carvajal Has a.pcr file (like.inp file) in background Very widely used Magnetic refinements Use winplotr interface 32

33 Mistakes Hardest thing in practice is spotting mistakes You don t know what the right answer is Are there errors in model or data? mistake_02 to mistake_08 contain data with errors in them solve the errors and win a prize! Stick to isotropic temperature factors Stick to a TCHz analytical peak shape function Fix pkx and pkz at 0 Durham University Chemistry Department Session 11 Constraints, Rigid Bodies and Structure Solution Dr John S.O. Evans Durham, January 2007 Durham 33

34 Data Compression (a) (b) Single crystal Four differently oriented single crystals Polycrystalline material (c) I 2-theta (d) 3D Information compressed onto 1D data compressed into one dimension 2θ 2θ 34

35 Insufficient information Powder pattern 3D diffraction data compressed onto 1D Loss of information relative to a single crystal experiment Single crystal people like 10 observations (10 hkl reflections) per refined parameter How many observations do we have in a powder pattern? alvo4_tch.inp step 3750 observations 530 hkl reflections in 2θ range 10,000 9,000 8,000 7,000 STR(P_-1, AlVO4) ` ` ` ` AlVO % ` ` 6,000 Counts 5,000 4,000 3,000 2,000 1, , Th Degrees

36 How many peaks? 10,000 AlVO % 9,000 8,000 7,000 6,000 Counts 5,000 4,000 3,000 2,000 1, , Th Degrees Counts 3,500 3,000 2,500 2,000 1,500 1, AlVO % Th Degrees 19 How many peaks? 10,000 AlVO % 9,000 8,000 7,000 6,000 Counts 5,000 4,000 3,000 2,000 1, , Th Degrees ,000 AlVO % 4,000 Counts 3,000 2,000 1, Th Degrees

37 How many peaks? 10,000 AlVO % 9,000 8,000 7,000 6,000 Counts 5,000 4,000 3,000 2,000 1, , Th Degrees AlVO % 1,500 Counts 1, Th Degrees Information in a powder pattern How much information is there in a powder pattern? Rarely enough See literature by e.g. Giacovazzo/David/Di Sivia 37

38 Restraints Bring in chemical information Dealt with in least squares in the same way as data Soft Restraints 2 2 χ tot = K1χ data + K 2 χ 2 rest Restraints e.g. you might know that Zr1-O2 distance should be ~2.075 Å Apply a penalty if it s not that value Penalty = (value-2.075) 2 Distance_Restrain(Zr1 O1, #ideal_dist, #actual dist, #tolerance, #weight) Distance_Restrain(Zr1 O1, 2.075, 2.037, 0.01, 1) Angle_Restrain(O1 Zr2 02, 90, 91, 1, 1) Penalty = weight * ( )^2; 38

39 Topas bond lengths/angles O1 Zr1 append_bond_lengths O1: Zr1:0 O1: O1: O1: O2: O2: O2: Restraints See tutorials 39

40 Constraints Force sub-sections of structure to be rigid Dealt with in least squares in the same way as symmetry Hard Constraints Constraints/Rigid Bodies e.g. force the Zr1-O2 bond to be exactly Å e.g. rigid body How many parameters? macro Octahedra(Zr1, o1, o2, o3, o4, o5, o6, 2.075) { Point_for_site(s0, 0, 0, 0) Point_for_site(s1, r, 0, 0) Point_for_site(s2, -r, 0, 0) Point_for_site(s3, 0, r, 0) Point_for_site(s4, 0, -r, 0) Point_for_site(s5, 0, 0, r) Point_for_site(s6, 0, 0, -r) } 40

41 TLS Matrices Atoms on both sides of a rigid group ought to vibrate in related ways Atoms/adps independently how many parameters? Rigid body/tls e.g. 8 parameters Rigid Bodies P 2 O 7 groups are well understood 2 parameters per P 2 O 7? Typically 1.5 Å P-O-P Angle P-O(-P) Distance

42 Structure Solution Simulated annealing type approach Refine, randomise, refine topas annealing expression in input file val_on_continue = Val + Val * Rand(-0.1,0.1); val_on_continue = ideal_coord + Rand(-0.1,0.1); Tutorials Restraints/Constraints Tutorial 3 ZrW 2 O 8 GSAS 4 restraints/combined refinement oxide GSAS 5 Rigid bodies Sc 2 (WO 4 ) 3 using TLS matrices GSAS 7 organic using restraints GSAS 9 Ni coordination polymer using restraints Tutorial 14 refining an organic using restraints then as a rigid group 42

43 Tutorials Structure Solution Tutorial 13 Structure solution of an inorganic oxide Tutorial 15 Organic structures and structure solution Tutorial 3 data suitable for structure solution Guided Tours? Bragg-Brentano/Transmission instruments Incident beam mono/no mono d8 s/d5000 s High temperature furnace/cryostat Vantec/Lynx-Eye psd s Sol-X energy dispersive Single crystal instruments (Judith s) 43

44 Durham University Chemistry Department Session 14 Mistakes Dr John S.O. Evans Durham, January 2007 Durham Group Refinement Group discussion of order of refining parameters e.g. if you refine just scale parameter when peak positions are wrong the peaks will disappear Look at obs/calc patterns before thinking what to refine Don t be afraid to e.g. fix scale parameter to a sensible value at the start Never refine a parameter if you don t understand its meaning! 44

45 Mistakes Hardest thing in practice is spotting mistakes You don t know what the right answer is Are there errors in model or data? Ivana s Rietveld Crimes mistake_02 to mistake_08 contain data with errors in them solve the errors and win a prize! Stick to isotropic temperature factors Stick to a TCHz analytical peak shape function For this instrument you can fix pkx and pkz at 0 45

Le Bail and Rietveld refinement

Le Bail and Rietveld refinement e Bail and Rietveld refinement The powder diffraction option (Rietveld refinement + lebail technique) was implemented in 001: Dušek,M., Petříček,V., Wunschel,M., Dinnebier,R.,E. & Van Smaalen,S. (001).

More information

J. Am. Chem. Soc., 1998, 120(7), , DOI: /ja972816e

J. Am. Chem. Soc., 1998, 120(7), , DOI: /ja972816e J. Am. Chem. Soc., 1998, 120(7), 1430-1433, DOI:10.1021/ja972816e Terms & Conditions Electronic Supporting Information files are available without a subscription to ACS Web Editions. The American Chemical

More information

X-ray, Neutron and e-beam scattering

X-ray, Neutron and e-beam scattering X-ray, Neutron and e-beam scattering Introduction Why scattering? Diffraction basics Neutrons and x-rays Techniques Direct and reciprocal space Single crystals Powders CaFe 2 As 2 an example What is the

More information

IMPROVING THE ACCURACY OF RIETVELD-DERIVED LATTICE PARAMETERS BY AN ORDER OF MAGNITUDE

IMPROVING THE ACCURACY OF RIETVELD-DERIVED LATTICE PARAMETERS BY AN ORDER OF MAGNITUDE Copyright (c)jcpds-international Centre for Diffraction Data 2002, Advances in X-ray Analysis, Volume 45. 158 IMPROVING THE ACCURACY OF RIETVELD-DERIVED LATTICE PARAMETERS BY AN ORDER OF MAGNITUDE B. H.

More information

structures sur poudres : contraintes Progrès dans l affinement de rigides et molles Laboratoire Léon Brillouin (CEA-CNRS), CEA/Saclay

structures sur poudres : contraintes Progrès dans l affinement de rigides et molles Laboratoire Léon Brillouin (CEA-CNRS), CEA/Saclay Progrès dans l affinement de structures sur poudres : contraintes rigides et molles Juan Rodríguez-Carvajal Laboratoire Léon Brillouin (CEA-CNRS), CEA/Saclay Institut Laue-Langevin, Grenoble (from 1-March-2006)

More information

THE IMPORTANCE OF THE SPECIMEN DISPLACEMENT CORRECTION IN RIETVELD PATTERN FITTING WITH SYMMETRIC REFLECTION-OPTICS DIFFRACTION DATA

THE IMPORTANCE OF THE SPECIMEN DISPLACEMENT CORRECTION IN RIETVELD PATTERN FITTING WITH SYMMETRIC REFLECTION-OPTICS DIFFRACTION DATA Copyright(c)JCPDS-International Centre for Diffraction Data 2001,Advances in X-ray Analysis,Vol.44 96 THE IMPORTANCE OF THE SPECIMEN DISPLACEMENT CORRECTION IN RIETVELD PATTERN FITTING WITH SYMMETRIC REFLECTION-OPTICS

More information

Setting The motor that rotates the sample about an axis normal to the diffraction plane is called (or ).

Setting The motor that rotates the sample about an axis normal to the diffraction plane is called (or ). X-Ray Diffraction X-ray diffraction geometry A simple X-ray diffraction (XRD) experiment might be set up as shown below. We need a parallel X-ray source, which is usually an X-ray tube in a fixed position

More information

Rietveld Structure Refinement of Protein Powder Diffraction Data using GSAS

Rietveld Structure Refinement of Protein Powder Diffraction Data using GSAS Rietveld Structure Refinement of Protein Powder Diffraction Data using GSAS Jon Wright ESRF, Grenoble, France Plan This is a users perspective Cover the protein specific aspects (assuming knowledge of

More information

Introduction to Quantitative Analysis

Introduction to Quantitative Analysis ntroduction to Quantitative Analysis Qualitative: D phases by comparison with standard patterns. Estimate of proportions of phases by comparing peak intensities attributed to the identified phases with

More information

Experiment 1: The Same or Not The Same?

Experiment 1: The Same or Not The Same? Experiment 1: The Same or Not The Same? Learning Goals After you finish this lab, you will be able to: 1. Use Logger Pro to collect data and calculate statistics (mean and standard deviation). 2. Explain

More information

The Reciprocal Lattice

The Reciprocal Lattice 59-553 The Reciprocal Lattice 61 Because of the reciprocal nature of d spacings and θ from Bragg s Law, the pattern of the diffraction we observe can be related to the crystal lattice by a mathematical

More information

Chem 253. Tutorial for Materials Studio

Chem 253. Tutorial for Materials Studio Chem 253 Tutorial for Materials Studio This tutorial is designed to introduce Materials Studio 7.0, which is a program used for modeling and simulating materials for predicting and rationalizing structure

More information

Crystal Structure Determination II

Crystal Structure Determination II Crystal Structure Determination II Dr. Falak Sher Pakistan Institute of Engineering and Applied Sciences 09/10/2010 Diffraction Intensities The integrated intensity, I (hkl) (peak area) of each powder

More information

Powder Diffraction & Rietveld Refinement School

Powder Diffraction & Rietveld Refinement School Powder Diffraction & Rietveld Refinement School Durham University 8 th April th April 8 Structure. % 5 5 3 35 4 45 5 Th Degrees 55 6 65 7 75 8 85 9 Powder Diffraction & Rietveld Refinement School 8 Powder

More information

Line Profile Analysis by the Whole Powder Pattern Fitting

Line Profile Analysis by the Whole Powder Pattern Fitting Line Profile Analysis by the Whole Powder Pattern Fitting Workshop W1 Denver X-Ray Diffraction Conference Colorado Springs August, 005 Outline of the Workshop Davor Balzar Basics about diffraction-line

More information

X-ray Crystallography

X-ray Crystallography 2009/11/25 [ 1 ] X-ray Crystallography Andrew Torda, wintersemester 2009 / 2010 X-ray numerically most important more than 4/5 structures Goal a set of x, y, z coordinates different properties to NMR History

More information

Rietveld method - grounds

Rietveld method - grounds 07 July 2010 Rietveld method - grounds Miguel Ángel García Aranda Departamento de Química Inorgánica Universidad de Málaga g_aranda@uma.es http://webpersonal.uma.es/~mag-aranda/ Outline 1.- (Very brief)

More information

AMS 132: Discussion Section 2

AMS 132: Discussion Section 2 Prof. David Draper Department of Applied Mathematics and Statistics University of California, Santa Cruz AMS 132: Discussion Section 2 All computer operations in this course will be described for the Windows

More information

Earth Materials Lab 2 - Lattices and the Unit Cell

Earth Materials Lab 2 - Lattices and the Unit Cell Earth Materials Lab 2 - Lattices and the Unit Cell Unit Cell Minerals are crystallographic solids and therefore are made of atoms arranged into lattices. The average size hand specimen is made of more

More information

Preparation for the workshop. Part 1. Introduction to the Java applet

Preparation for the workshop. Part 1. Introduction to the Java applet ISODISPLACE Workshop Harold T. Stokes International School in the Use and Applications of the Bilbao Crystallographic Server June 2009, Lekeitio, Spain isodisplace is a tool for exploring the structural

More information

PROGRAM SCHEDULE. Advanced Methods in X-ray Diffraction Analysis: the XD Programming Package Buffalo NY, May 2003

PROGRAM SCHEDULE. Advanced Methods in X-ray Diffraction Analysis: the XD Programming Package Buffalo NY, May 2003 PROGRAM SCHEDULE Advanced Methods in X-ray Diffraction Analysis: the XD Programming Package Buffalo NY, 12-17 May 2003 12 th May, Monday Pre-workshop talk by Dr. Charles Campana of Bruker AXS on Solving

More information

Conservation of Momentum

Conservation of Momentum Learning Goals Conservation of Momentum After you finish this lab, you will be able to: 1. Use Logger Pro to analyze video and calculate position, velocity, and acceleration. 2. Use the equations for 2-dimensional

More information

Structure Report for J. Reibenspies

Structure Report for J. Reibenspies X-ray Diffraction Laboratory Center for Chemical Characterization and Analysis Department of Chemistry Texas A & M University Structure Report for J. Reibenspies Project Name: Sucrose Date: January 29,

More information

Laboratory Manual 1.0.6

Laboratory Manual 1.0.6 Laboratory Manual 1.0.6 Background What is X-ray Diffraction? X-rays scatter off of electrons, in a process of absorption and re-admission. Diffraction is the accumulative result of the x-ray scattering

More information

Magnetic Liposomes based on Nickel Ferrite Nanoparticles for Biomedical Applications

Magnetic Liposomes based on Nickel Ferrite Nanoparticles for Biomedical Applications Electronic Supplementary Material (ESI) for Physical Chemistry Chemical Physics. This journal is the Owner Societies 2015 Supplementary Information Magnetic Liposomes based on Nickel Ferrite Nanoparticles

More information

HOW TO ANALYZE SYNCHROTRON DATA

HOW TO ANALYZE SYNCHROTRON DATA HOW TO ANALYZE SYNCHROTRON DATA 1 SYNCHROTRON APPLICATIONS - WHAT Diffraction data are collected on diffractometer lines at the world s synchrotron sources. Most synchrotrons have one or more user facilities

More information

organic papers Pamoic acid determined from powder diffraction data

organic papers Pamoic acid determined from powder diffraction data organic papers Acta Crystallographica Section E Structure Reports Online ISSN 1600-5368 Pamoic acid determined from powder diffraction data Delia A. Haynes, a Jacco Van de Streek, b Jonathan C. Burley,

More information

SOLID STATE 9. Determination of Crystal Structures

SOLID STATE 9. Determination of Crystal Structures SOLID STATE 9 Determination of Crystal Structures In the diffraction experiment, we measure intensities as a function of d hkl. Intensities are the sum of the x-rays scattered by all the atoms in a crystal.

More information

Welcome to. Session

Welcome to. Session Welcome to Session 2006-07 The basics Status A1X (2KPU) and A1Y (2KRU) are level 1 courses in the Faculty of Physical Sciences, and are each worth 20 credits. A1X is taught in semester 1, and A1Y in semester

More information

Phonon frequency (THz) R-3m: 60GPa. Supplementary Fig. 1. Phonon dispersion curves of R-3m-Ca 5 C 2 at 60 GPa.

Phonon frequency (THz) R-3m: 60GPa. Supplementary Fig. 1. Phonon dispersion curves of R-3m-Ca 5 C 2 at 60 GPa. Phonon frequency (THz) 2 15 R-3m: 6GPa 1 5 F Z Supplementary Fig. 1. Phonon dispersion curves of R-3m-Ca 5 C 2 at 6 GPa. 1 Phonon frequency (THz) 16 Pnma: 8 GPa 12 8 4 Z T Y S X U R Supplementary Fig.

More information

Beamline Practice at BL02B2 (Powder diffraction)

Beamline Practice at BL02B2 (Powder diffraction) Beamline Practice at BL02B2 (Powder diffraction) Rietveld Refinement using Synchrotron X-ray Powder Diffraction Data Shogo Kawaguchi, Bagautdin Bagautdinov, and Kunihisa Sugimoto (JASRI) 1. Introduction

More information

Neutron Instruments I & II. Ken Andersen ESS Instruments Division

Neutron Instruments I & II. Ken Andersen ESS Instruments Division Neutron Instruments I & II ESS Instruments Division Neutron Instruments I & II Overview of source characteristics Bragg s Law Elastic scattering: diffractometers Continuous sources Pulsed sources Inelastic

More information

Crystal Structure and Electron Diffraction

Crystal Structure and Electron Diffraction Crystal Structure and Electron Diffraction References: Kittel C.: Introduction to Solid State Physics, 8 th ed. Wiley 005 University of Michigan, PHY441-44 (Advanced Physics Laboratory Experiments, Electron

More information

Electro Magnetic Field Dr. Harishankar Ramachandran Department of Electrical Engineering Indian Institute of Technology Madras

Electro Magnetic Field Dr. Harishankar Ramachandran Department of Electrical Engineering Indian Institute of Technology Madras Electro Magnetic Field Dr. Harishankar Ramachandran Department of Electrical Engineering Indian Institute of Technology Madras Lecture - 7 Gauss s Law Good morning. Today, I want to discuss two or three

More information

X-Ray Diffraction. Parkland College. Reuben James Parkland College. Recommended Citation

X-Ray Diffraction. Parkland College. Reuben James Parkland College. Recommended Citation Parkland College A with Honors Projects Honors Program 2014 X-Ray Diffraction Reuben James Parkland College Recommended Citation James, Reuben, "X-Ray Diffraction" (2014). A with Honors Projects. 115.

More information

Institute of Physics, Prague 6, Cukrovarnická street

Institute of Physics, Prague 6, Cukrovarnická street Jana2006 Institute of Physics, Prague 6, Cukrovarnická street Jana2006 Program for structure analysis of crystals periodic in three or more dimensions from diffraction data Václav Petříček, Michal Dušek

More information

Dealing with overlapped data. Powder diffraction: issues and algorithms. WIFD - standard disclosure. Proteins and powders. Outline

Dealing with overlapped data. Powder diffraction: issues and algorithms. WIFD - standard disclosure. Proteins and powders. Outline Dealing with overlapped data Powder diffraction: issues and algorithms Bill David, ISIS Facility, Rutherford Appleton Laboratory, UK Bill David, ISIS Facility, Rutherford Appleton Laboratory, UK WIFD -

More information

Today: Scalars and vectors Coordinate systems, Components Vector Algebra

Today: Scalars and vectors Coordinate systems, Components Vector Algebra PHY131H1F - Class 6 Today: Scalars and vectors Coordinate systems, Components Vector Algebra Clicker Question The ball rolls up the ramp, then back down. Which is the correct acceleration graph? [Define

More information

Discrete Mathematics. Kenneth A. Ribet. January 31, 2013

Discrete Mathematics. Kenneth A. Ribet. January 31, 2013 January 31, 2013 A non-constructive proof Two classical facts are that π and e 2.71828... are irrational. Further, it is known that neither satisfies a quadratic equation x 2 + ax + b = 0 where a and b

More information

Ovidiu Garlea. Neutron Scattering Sciences Division Oak Ridge National Laboratory

Ovidiu Garlea. Neutron Scattering Sciences Division Oak Ridge National Laboratory Ovidiu Garlea Neutron Scattering Sciences Division Oak Ridge National Laboratory based on materials presented by Juan Rodríguez-Carvajal Institute Laue-Langevin, Grenoble Juan Rodríguez-Carvajal (ILL,

More information

Comp 11 Lectures. Mike Shah. July 12, Tufts University. Mike Shah (Tufts University) Comp 11 Lectures July 12, / 33

Comp 11 Lectures. Mike Shah. July 12, Tufts University. Mike Shah (Tufts University) Comp 11 Lectures July 12, / 33 Comp 11 Lectures Mike Shah Tufts University July 12, 2017 Mike Shah (Tufts University) Comp 11 Lectures July 12, 2017 1 / 33 Please do not distribute or host these slides without prior permission. Mike

More information

Summary of Experimental Protein Structure Determination. Key Elements

Summary of Experimental Protein Structure Determination. Key Elements Programme 8.00-8.20 Summary of last week s lecture and quiz 8.20-9.00 Structure validation 9.00-9.15 Break 9.15-11.00 Exercise: Structure validation tutorial 11.00-11.10 Break 11.10-11.40 Summary & discussion

More information

Powder Indexing of Difficult Cells using the Indexing Options within Topas. ACA, Orlando, May 28, 2005

Powder Indexing of Difficult Cells using the Indexing Options within Topas. ACA, Orlando, May 28, 2005 Powder Indexing of Difficult Cells using the Indexing Options within Topas ACA, Orlando, May 28, 2005 Thanks to Alen Coehlo and Arnt Kern for writing and fostering Topas, and for endless help in using

More information

Determination of the magnetic structure from powder neutron diffraction

Determination of the magnetic structure from powder neutron diffraction Determination of the magnetic structure from powder neutron diffraction Vladimir Pomjakushin Laboratory for Neutron Scattering, ETHZ and PSI A Hands-on Workshop on X-rays, Synchrotron Radiation and Neutron

More information

Data Acquisition. What choices need to be made?

Data Acquisition. What choices need to be made? 1 Specimen type and preparation Radiation source Wavelength Instrument geometry Detector type Instrument setup Scan parameters 2 Specimen type and preparation Slide mount Front loading cavity Back loading

More information

High-Resolution Neutron Diffraction Monochromators for Neutron Diffractometry

High-Resolution Neutron Diffraction Monochromators for Neutron Diffractometry High-Resolution Neutron Diffraction Monochromators for Neutron Diffractometry Pavol Mikula, Nuclear Physics Institute ASCR 25 68 Řež near Prague, Czech Republic NMI3-Meeting, Barcelona, 21 Motivation Backscattering

More information

QUESTIONNAIRE FOR STRUCTURE DETERMINATION BY POWDER DIFFRACTOMETRY ROUND ROBIN

QUESTIONNAIRE FOR STRUCTURE DETERMINATION BY POWDER DIFFRACTOMETRY ROUND ROBIN QUESTIONNAIRE FOR STRUCTURE DETERMINATION BY POWDER DIFFRACTOMETRY ROUND ROBIN Sample number 2: C22 H24 N2 O8 HCl 0.2 Is the second sample structure solvable with this quality of data? Yes [x] No [ ] 1.

More information

Working with Xplora Knoppix: General introduction and practical exercises on the web experiment Electron Diffraction

Working with Xplora Knoppix: General introduction and practical exercises on the web experiment Electron Diffraction Working with Xplora Knoppix: General introduction and practical exercises on the web experiment Electron Diffraction Assimina Kontogeorgiou Karl Sarnow Xplora Web experiments are: Real experiments, operated

More information

Quality Assurance Plan. March 30, Chemical Crystallography Laboratory

Quality Assurance Plan. March 30, Chemical Crystallography Laboratory Quality Assurance Plan Page 1 of 7 Quality Assurance Plan March 30, 2017 Chemical Crystallography Laboratory Author: Douglas R. Powell Quality Assurance Plan Page 2 of 7 Distribution Douglas R. Powell,

More information

LAB Exercise #4 - Answers The Traction Vector and Stress Tensor. Introduction. Format of lab. Preparation reading

LAB Exercise #4 - Answers The Traction Vector and Stress Tensor. Introduction. Format of lab. Preparation reading LAB Exercise #4 - Answers The Traction Vector and Stress Tensor Due: Thursday, 26 February 2009 (Special Thanks to D.D. Pollard who pioneered this exercise in 1991) Introduction Stress concentrations in

More information

SUPPLEMENTARY INFORMATION

SUPPLEMENTARY INFORMATION doi:10.1038/nature14327 Supplementary Text Structure solution and Rietveld refinement of mmen-mn 2 (dobpdc) Initially, the previously reported crystal structure of the isostructural Zn 2 (dobpdc) 13, with

More information

Resolution: maximum limit of diffraction (asymmetric)

Resolution: maximum limit of diffraction (asymmetric) Resolution: maximum limit of diffraction (asymmetric) crystal Y X-ray source 2θ X direct beam tan 2θ = Y X d = resolution 2d sinθ = λ detector 1 Unit Cell: two vectors in plane of image c* Observe: b*

More information

Structural Characterization of Substituted Calcium Titanate Compounds Ca 1-X La X Ti 1-x Fe x O 3

Structural Characterization of Substituted Calcium Titanate Compounds Ca 1-X La X Ti 1-x Fe x O 3 Egypt. J. Solids, Vol. (27), No. (2), (2004) 213 Structural Characterization of Substituted Calcium Titanate Compounds Ca 1-X La X Ti 1-x Fe x O 3 A.M. Moustafa 1, I.S Ahmed Farag 1 and L.M. Salah 2 1

More information

PROBING CRYSTAL STRUCTURE

PROBING CRYSTAL STRUCTURE PROBING CRYSTAL STRUCTURE Andrew Baczewski PHY 491, October 10th, 2011 OVERVIEW First - we ll briefly discuss Friday s quiz. Today, we will answer the following questions: How do we experimentally probe

More information

Notes on RIETAN-2000

Notes on RIETAN-2000 Notes on RIETAN-2000 1. Profile functions For details in the split pseudo-voigt function (NPRFN = 1) and split Pearson VII function (NPRFN = 3), refer to Toraya (1990) and Izumi (2000a). The above split

More information

Physics E-1ax, Fall 2014 Experiment 3. Experiment 3: Force. 2. Find your center of mass by balancing yourself on two force plates.

Physics E-1ax, Fall 2014 Experiment 3. Experiment 3: Force. 2. Find your center of mass by balancing yourself on two force plates. Learning Goals Experiment 3: Force After you finish this lab, you will be able to: 1. Use Logger Pro to analyze video and calculate position, velocity, and acceleration. 2. Find your center of mass by

More information

Spectral Analysis of High Resolution X-ray Binary Data

Spectral Analysis of High Resolution X-ray Binary Data Spectral Analysis of High Resolution X-ray Binary Data Michael Nowak, mnowak@space.mit.edu X-ray Astronomy School; Aug. 1-5, 2011 Introduction This exercise takes a look at X-ray binary observations using

More information

Search for the Gulf of Carpentaria in the remap search bar:

Search for the Gulf of Carpentaria in the remap search bar: This tutorial is aimed at getting you started with making maps in Remap (). In this tutorial we are going to develop a simple classification of mangroves in northern Australia. Before getting started with

More information

MATH 137 : Calculus 1 for Honours Mathematics. Online Assignment #2. Introduction to Sequences

MATH 137 : Calculus 1 for Honours Mathematics. Online Assignment #2. Introduction to Sequences 1 MATH 137 : Calculus 1 for Honours Mathematics Online Assignment #2 Introduction to Sequences Due by 9:00 pm on WEDNESDAY, September 19, 2018 Instructions: Weight: 2% This assignment covers the topics

More information

Keble College - Hilary 2012 Section VI: Condensed matter physics Tutorial 2 - Lattices and scattering

Keble College - Hilary 2012 Section VI: Condensed matter physics Tutorial 2 - Lattices and scattering Tomi Johnson Keble College - Hilary 2012 Section VI: Condensed matter physics Tutorial 2 - Lattices and scattering Please leave your work in the Clarendon laboratory s J pigeon hole by 5pm on Monday of

More information

Crystallography Reading: Warren, Chapters 2.1, 2.2, 2.6, 8 Surface symmetry: Can be a clue to underlying structure. Examples:

Crystallography Reading: Warren, Chapters 2.1, 2.2, 2.6, 8 Surface symmetry: Can be a clue to underlying structure. Examples: Crystallography Reading: Warren, Chapters 2.1, 2.2, 2.6, 8 Surface symmetry: Can be a clue to underlying structure. Examples: Snow (SnowCrystals.com) Bismuth (Bao, Kavanagh, APL 98 66103 (2005) Hexagonal,

More information

Practical Manual. General outline to use the structural information obtained from molecular alignment

Practical Manual. General outline to use the structural information obtained from molecular alignment Practical Manual General outline to use the structural information obtained from molecular alignment 1. In order to use the information one needs to know the direction and the size of the tensor (susceptibility,

More information

Neutron Powder Diffraction

Neutron Powder Diffraction Neutron Powder Diffraction A.W. Hewat Institut Max von Laue - Paul Langevin, 156X Grenoble Cedex, 38042 France. 1. Introduction 1.1 A typical application of Neutron Powder Diffraction - High Tc Superconductors

More information

Supporting Information

Supporting Information Supporting Information X-ray diffraction Room temperature powder X-ray diffraction (PXRD) data were initially collected in a Siemens D-5000 diffractometer using CuK radiation ( =1.5418 Å). Further low

More information

Rajesh Prasad Department of Applied Mechanics Indian Institute of Technology New Delhi

Rajesh Prasad Department of Applied Mechanics Indian Institute of Technology New Delhi TEQIP WORKSHOP ON HIGH RESOLUTION X-RAY AND ELECTRON DIFFRACTION, FEB 01, 2016, IIT-K. Introduction to x-ray diffraction Peak Positions and Intensities Rajesh Prasad Department of Applied Mechanics Indian

More information

UNIVERSITY OF TORONTO Department of Electrical and Computer Engineering ECE320H1-F: Fields and Waves, Course Outline Fall 2013

UNIVERSITY OF TORONTO Department of Electrical and Computer Engineering ECE320H1-F: Fields and Waves, Course Outline Fall 2013 UNIVERSITY OF TORONTO Department of Electrical and Computer Engineering ECE320H1-F: Fields and Waves, Course Outline Fall 2013 Name Office Room Email Address Lecture Times Professor Mo Mojahedi SF2001D

More information

Data Collection. Overview. Methods. Counter Methods. Crystal Quality with -Scans

Data Collection. Overview. Methods. Counter Methods. Crystal Quality with -Scans Data Collection Overview with a unit cell, possible space group and computer reference frame (orientation matrix); the location of diffracted x-rays can be calculated (h k l) and intercepted by something

More information

PHY 111L Activity 2 Introduction to Kinematics

PHY 111L Activity 2 Introduction to Kinematics PHY 111L Activity 2 Introduction to Kinematics Name: Section: ID #: Date: Lab Partners: TA initials: Objectives 1. Introduce the relationship between position, velocity, and acceleration 2. Investigate

More information

Wednesday, 10 September 2008

Wednesday, 10 September 2008 MA211 : Calculus, Part 1 Lecture 2: Sets and Functions Dr Niall Madden (Mathematics, NUI Galway) Wednesday, 10 September 2008 MA211 Lecture 2: Sets and Functions 1/33 Outline 1 Short review of sets 2 Sets

More information

Outline. Wednesday, 10 September Schedule. Welcome to MA211. MA211 : Calculus, Part 1 Lecture 2: Sets and Functions

Outline. Wednesday, 10 September Schedule. Welcome to MA211. MA211 : Calculus, Part 1 Lecture 2: Sets and Functions Outline MA211 : Calculus, Part 1 Lecture 2: Sets and Functions Dr Niall Madden (Mathematics, NUI Galway) Wednesday, 10 September 2008 1 Short review of sets 2 The Naturals: N The Integers: Z The Rationals:

More information

UNIT 18 RADIOACTIVITY. Objectives. to be able to use knowledge of electric and magnetic fields to explore the nature of radiation

UNIT 18 RADIOACTIVITY. Objectives. to be able to use knowledge of electric and magnetic fields to explore the nature of radiation UNIT 18 RADIOACTIVITY Objectives to be able to use knowledge of electric and magnetic fields to explore the nature of radiation to understand that radioactivity is a statistical process; each unstable

More information

PanosFX CALENDAR User guide. PanosFX CALENDAR. For Adobe Photoshop CC, CS6, CS5, CS4, CS3. PSD templates & language switcher actions.

PanosFX CALENDAR User guide. PanosFX CALENDAR. For Adobe Photoshop CC, CS6, CS5, CS4, CS3. PSD templates & language switcher actions. PanosFX CALENDAR For Adobe Photoshop CC, CS6, CS5, CS4, CS3 PSD templates & language switcher actions User Guide CONTENTS 1. THE BASICS... 1 1.1. Description... 1 1.2. How the files are organized... 2

More information

Advanced Structural Analysis Prof. Devdas Menon Department of Civil Engineering Indian Institute of Technology, Madras

Advanced Structural Analysis Prof. Devdas Menon Department of Civil Engineering Indian Institute of Technology, Madras Advanced Structural Analysis Prof. Devdas Menon Department of Civil Engineering Indian Institute of Technology, Madras Module No. # 5.4 Lecture No. # 30 Matrix Analysis of Beams and Grids (Refer Slide

More information

Conduction and Radiation Prof. C. Balaji Department of Mechanical Engineering Indian Institute of Technology, Madras

Conduction and Radiation Prof. C. Balaji Department of Mechanical Engineering Indian Institute of Technology, Madras Conduction and Radiation Prof. C. Balaji Department of Mechanical Engineering Indian Institute of Technology, Madras Lecture No. # 07 Planck s Blackbody radiation distribution Function So, in the last

More information

3.012 Structure An Introduction to X-ray Diffraction

3.012 Structure An Introduction to X-ray Diffraction 3.012 Structure An Introduction to X-ray Diffraction This handout summarizes some topics that are important for understanding x-ray diffraction. The following references provide a thorough explanation

More information

LAB 2 - ONE DIMENSIONAL MOTION

LAB 2 - ONE DIMENSIONAL MOTION Name Date Partners L02-1 LAB 2 - ONE DIMENSIONAL MOTION OBJECTIVES Slow and steady wins the race. Aesop s fable: The Hare and the Tortoise To learn how to use a motion detector and gain more familiarity

More information

X-ray diffraction geometry

X-ray diffraction geometry X-ray diffraction geometry Setting controls sample orientation in the diffraction plane. most important for single-crystal diffraction For any poly- (or nano-) crystalline specimen, we usually set: 1 X-ray

More information

Magnetic neutron diffraction. Rob McQueeney, Ames Laboratory and Iowa State University

Magnetic neutron diffraction. Rob McQueeney, Ames Laboratory and Iowa State University Magnetic neutron diffraction Rob McQueeney, Ames Laboratory and Iowa State University September 19, 2018 Magnetic moment-rare earths Progressive filling of 4f levels Strong Hund s rules Strong spin-orbit

More information

6. X-ray Crystallography and Fourier Series

6. X-ray Crystallography and Fourier Series 6. X-ray Crystallography and Fourier Series Most of the information that we have on protein structure comes from x-ray crystallography. The basic steps in finding a protein structure using this method

More information

EXPERIMENT 7: ANGULAR KINEMATICS AND TORQUE (V_3)

EXPERIMENT 7: ANGULAR KINEMATICS AND TORQUE (V_3) TA name Lab section Date TA Initials (on completion) Name UW Student ID # Lab Partner(s) EXPERIMENT 7: ANGULAR KINEMATICS AND TORQUE (V_3) 121 Textbook Reference: Knight, Chapter 13.1-3, 6. SYNOPSIS In

More information

PHYSICS 15a, Fall 2006 SPEED OF SOUND LAB Due: Tuesday, November 14

PHYSICS 15a, Fall 2006 SPEED OF SOUND LAB Due: Tuesday, November 14 PHYSICS 15a, Fall 2006 SPEED OF SOUND LAB Due: Tuesday, November 14 GENERAL INFO The goal of this lab is to determine the speed of sound in air, by making measurements and taking into consideration the

More information

Model Building An Introduction to Atomistic Simulation

Model Building An Introduction to Atomistic Simulation Materials and Modelling MPhil 2006-07 COURSE MP3: MONTE CARLO AND MOLECULAR DYNAMICS COMPUTING CLASS 1 Model Building An Introduction to Atomistic Simulation Wednesday 22 nd November 2006 14.00 16.00 1

More information

How to Make or Plot a Graph or Chart in Excel

How to Make or Plot a Graph or Chart in Excel This is a complete video tutorial on How to Make or Plot a Graph or Chart in Excel. To make complex chart like Gantt Chart, you have know the basic principles of making a chart. Though I have used Excel

More information

Lecture for Week 2 (Secs. 1.3 and ) Functions and Limits

Lecture for Week 2 (Secs. 1.3 and ) Functions and Limits Lecture for Week 2 (Secs. 1.3 and 2.2 2.3) Functions and Limits 1 First let s review what a function is. (See Sec. 1 of Review and Preview.) The best way to think of a function is as an imaginary machine,

More information

RIETVELD REFINEMENT WITH XRD AND ND: ANALYSIS OF METASTABLE QANDILITE-LIKE STRUCTURES

RIETVELD REFINEMENT WITH XRD AND ND: ANALYSIS OF METASTABLE QANDILITE-LIKE STRUCTURES Copyright JCPDS - International Centre for Diffraction Data 2004, Advances in X-ray Analysis, Volume 47. 261 RIETVELD REFINEMENT WITH XRD AND ND: ANALYSIS OF METASTABLE QANDILITE-LIKE STRUCTURES G. Kimmel

More information

Powder X-ray and neutron

Powder X-ray and neutron Powder X-ray and neutron diffraction Lecture series: Modern Methods in Heterogeneous Catalysis Research Malte Behrens, FHI-AC behrens@fhi-berlin.mpg.de With Figures taken from different sources: See last

More information

Math 31 Lesson Plan. Day 2: Sets; Binary Operations. Elizabeth Gillaspy. September 23, 2011

Math 31 Lesson Plan. Day 2: Sets; Binary Operations. Elizabeth Gillaspy. September 23, 2011 Math 31 Lesson Plan Day 2: Sets; Binary Operations Elizabeth Gillaspy September 23, 2011 Supplies needed: 30 worksheets. Scratch paper? Sign in sheet Goals for myself: Tell them what you re going to tell

More information

X-ray analysis. 1. Basic crystallography 2. Basic diffraction physics 3. Experimental methods

X-ray analysis. 1. Basic crystallography 2. Basic diffraction physics 3. Experimental methods X-ray analysis 1. Basic crystallography 2. Basic diffraction physics 3. Experimental methods Introduction Noble prizes associated with X-ray diffraction 1901 W. C. Roentgen (Physics) for the discovery

More information

Neutron Powder Diffraction Theory and Instrumentation

Neutron Powder Diffraction Theory and Instrumentation NTC, Taiwen Aug. 31, 212 Neutron Powder Diffraction Theory and Instrumentation Qingzhen Huang (qing.huang@nist.gov) NIST Center for Neutron Research (www.ncnr.nist.gov) Definitions E: energy; k: wave vector;

More information

Lab 5 - ELECTRON CHARGE-TO-MASS RATIO

Lab 5 - ELECTRON CHARGE-TO-MASS RATIO 81 Name Date Partners Lab 5 - ELECTRON CHARGE-TO-MASS RATIO OBJECTIVES To understand how electric and magnetic fields impact an electron beam To experimentally determine the electron charge-to-mass ratio

More information

Polarization of light

Polarization of light Laboratory#8 Phys4480/5480 Dr. Cristian Bahrim Polarization of light Light is a transverse electromagnetic wave (EM) which travels due to an electric field and a magnetic field oscillating in phase and

More information

A Degree In Chemistry

A Degree In Chemistry A Degree In Chemistry Why chemistry? It is the central science Chemists contribute a lot to our quality of life New drugs Detecting disease Nanotechnology Batteries New materials Food production CHEMISTRY

More information

An analytical approximation for a size-broadened profile given by the lognormal and gamma distributions

An analytical approximation for a size-broadened profile given by the lognormal and gamma distributions Journal of Applied Crystallography ISSN 0021-8898 An analytical approximation for a size-broadened profile given by the lognormal gamma distributions N. C. Popa D. Balzar Copyright International Union

More information

Lecture 2.1 :! Electric Field

Lecture 2.1 :! Electric Field Lecture 2.1 :! Electric Field Lecture Outline:! Electric Field! Electric Field of Point Charges! Electric Field of Continuous Distribution of Charge! Textbook Reading:! Ch. 26.1-26.3 Jan. 20, 2015 1 Announcements

More information

Experiment #4: Optical Spectrometer and the Prism Deviation

Experiment #4: Optical Spectrometer and the Prism Deviation Experiment #4: Optical Spectrometer and the Prism Deviation Carl Adams October 2, 2011 1 Purpose In the first part of this lab you will set up and become familiar with an optical spectrometer. In the second

More information

MITOCW ocw f99-lec16_300k

MITOCW ocw f99-lec16_300k MITOCW ocw-18.06-f99-lec16_300k OK. Here's lecture sixteen and if you remember I ended up the last lecture with this formula for what I called a projection matrix. And maybe I could just recap for a minute

More information

Line Broadening. φ(ν) = Γ/4π 2 (ν ν 0 ) 2 + (Γ/4π) 2, (3) where now Γ = γ +2ν col includes contributions from both natural broadening and collisions.

Line Broadening. φ(ν) = Γ/4π 2 (ν ν 0 ) 2 + (Γ/4π) 2, (3) where now Γ = γ +2ν col includes contributions from both natural broadening and collisions. Line Broadening Spectral lines are not arbitrarily sharp. There are a variety of mechanisms that give them finite width, and some of those mechanisms contain significant information. We ll consider a few

More information

Physics 212E Spring 2004 Classical and Modern Physics. Computer Exercise #2

Physics 212E Spring 2004 Classical and Modern Physics. Computer Exercise #2 Physics 212E Spring 2004 Classical and Modern Physics Chowdary Computer Exercise #2 Launch Mathematica by clicking on the Start menu (lower left hand corner of the screen); from there go up to Science

More information

Possible Prelab Questions.

Possible Prelab Questions. Possible Prelab Questions. Read Lab 2. Study the Analysis section to make sure you have a firm grasp of what is required for this lab. 1) A car is travelling with constant acceleration along a straight

More information

MINERALOGY (EESC35) Course Outline. Dear all,

MINERALOGY (EESC35) Course Outline. Dear all, MINERALOGY (EESC35) Dear all, Welcome to the Mineralogy (EESC35) course! This course will bring to you the rich and colourful world of minerals, rocks and their associations. We shall have a look at basic

More information