Pressure and forces in active matter
|
|
- Ezra Bruce
- 5 years ago
- Views:
Transcription
1 1 Pressure and forces in active matter Alex Solon (MIT) University of Houston, February 8th 2018
2 Active matter 2 Stored energy Mechanical energy Self-propelled particles Found at all scales in living systems sub-cellular cellular macroscopic Active matter = Assemblies of active particles?
3 Collective behaviours Bird flocks Cell migration StarFlag collaboration Yamaguchi et al, Sci. Rep Actin density waves Microtubule gels Schaller et al Nature 2010 Dogic lab, Nature
4 Challenges 4 In biology: Mechanics of living matter In engineering Painting with bacteria W. Poon lab Mixing, targeted delivery, crystal annealing Smart materials?
5 The Stat. Mech. approach 5 Nonequilibrium systems with a reversed energy cascade Simple models Universality Controlled experiments v Artificial self-propelled particles Janus colloids Precisely controlled interactions Bacterial patterns J. Huang lab
6 My researches in active matter 6 Transition to collective motion Motility-induced phase separation Expansion of cell colonies Pressure and forces
7 7 Active particle Self-propelled at speed v Different reorientation mechanisms v v dx dt Run and Tumble Particles (Bacteria) = v e(θ)+(interactions), dθ dt Active Brownian Particles (Janus colloids) = 2D r ξ+(interactions) (in 2d) Dry active matter: no hydrodynamic interactions
8 8 Scales v v Relevant scales: Persistence time τ r Persistence length l r = vτ r E.Coli: Pt-coated Janus colloids: Colloidal rollers: τ r 1s, l r 30µm τ r 5s, l r 10µm τ r 0.3s, l r 150µm At large scale: SPP Hot colloid with T eff vl r
9 Harmonic potential 9 RTP in a circular harmonic potential U(r) = λ r 2 2 Slowly varying potentials Effective equilibrium Solon, Cates and Tailleur, EPJST (2015)
10 Outline 10 Mechanical pressure Curved objects and flexible filaments Forces mediated by an active medium
11 From passive to active pressure 11 In an equilibrium fluid: P = F wall S = Tr σ d In an active fluid: No free energy Forces in biological systems = F V P = F wall S =? = f (ρ, T ) N Equation of state Actin cortex Wound healing
12 Mechanical pressure 12 Particles confined by a potential V w ρ(x) V w 0 x w x Mechanical pressure: P = 0 dxρ(x)v w(x) Ideal gas: ρ(x) = ρ 0 e Vw (x)/k BT P = ρ 0 k B T P independent of V w Equation of state P(ρ 0, T )
13 Wall 13 Two effects of the wall Γ w Force V w + Torque Γ w V w
14 Active ideal gas pressure 14 Equation of motion dx dt = ve(θ) γv w(x)e x, dθ dt = Γ w (x, θ) + 2D r ξ Exact expression for the pressure P = ρ 0 k B T eff v dx D r T eff = v 2 2γD r 0 2π 0 dθ Γ w (x, θ) sin(θ)p(x, θ) Spherical particles (Γ W = 0) = Ideal gas law Torques = P depends on the wall potential: No equation of state
15 Self-propelled ellipses 15 (x xw )2 Ellipses in a harmonic wall potential V w (x) = λ 2 ] P = ρ 0v 2 2λκ [1 e λκ Dr When Γ w increases, P decreases
16 Interacting spherical ABPs Effect of interactions? 20 P P 10 λ = 2 λ = 4 λ = 6 λ = 0.1 λ = 1 λ = 10 ρ non-interacting Pairwise forces Equation of state P 6 4 λ = 0.1 λ = 1 λ = 10 non-interacting ρ Quorum sensing v( ρ) No Equation of state λ = 0.1 λ = 1 λ = 10 non-interacting 2 Confusing Need a simple test 0 ρ Alignment 16
17 A simple test 17 Place an asymmetric piston in the middle of a cavity Equation of state wall always static.
18 A simple test - All cases 18 No equation of state Spontaneous compression Solon, Fily, Baskaran, Cates, Kafri, Kardar and Tailleur Nat. Phys. 2015
19 Outline 19 Mechanical pressure Curved objects and flexible filaments Forces mediated by an active medium
20 Curved walls 20 Active particles accumulate in curved regions Aranson lab. DiLeonardo lab. Wall P Equation of state Nikola, Solon, Kafri, Kardar, Voituriez, Tailleur Phys. Rev. Lett. 2016
21 Flexible filament 21 Semi-flexible filament in a bath of ABPs Instability for q < q i (T, κ b ) 200 y y y t = 10 2 t = 10 3 t = Coarsening x x x Nikola, Solon, Kafri, Kardar, Voituriez, Tailleur Phys. Rev. Lett. 2016
22 22 Free filament 200 D κ b = 250 κ b = L f Spontaneous symmetry breaking Polymer in active medium
23 23 Experiments Absence of equation of state and Instability Juno et al, Phys. Rev. Lett. (2017) Flexible filament Junang Li, Shreyas Gokhale, Nikta Fakhri, Jeff Gore (MIT)
24 Outline 24 Mechanical pressure Curved objects and flexible filaments Forces mediated by an active medium
25 Flow generated by an object F F Force exerted by the object on the bath Generates flows Similar to an electric dipole Steady-state density given by D eff 2 ρ = µ (ρ V + G) ρ(r) = electrostatic potential r 1 J(r) = electric field r 2 p F 6 3 y/l r x/l r Baek, Solon, Xu, Nikola, Kafri, Phys. Rev. Lett ρl 2 r
26 Two-body interactions 26 p 1 p 2 p= 2 0 Long-range interaction µ r p 1 F 2 (r) = 2πD eff ρ b r 2 p 2 + R 2 J 1 (r) + O(r 3 ) µ r p 1 τ 2 (r) = 2πD eff ρ b r 2 T 2 + γ 2 J 1 (r) + O(r 3 ) p i, T i, R i, γ i : one-body properties Can be tuned (in principle) by designing the object Different dynamical phenomena
27 Synchronized rotations 27 Two semi-circles pinned at different points J A C J C A CA C C AC A A Changing the mobilities: transition between phase-locking and synchronized rotations
28 Alignment of moving semi-circles 28 Two semi-circles with different center of mass C I A I II II J A III II III IV III IV A C I Snake-like motion
29 29 Conclusion Unusual forces in active matter Absence of equation of state Instability of filaments Long-range interactions Long-lived Casimir forces following a quench Rohwer, Solon, Kardar, Krüger, arxiv: Importance in biological systems? Toward self-assembly mediated by active forces?
30 Acknowlegments 30 Mehran Kardar (MIT) Julien Tailleur (Paris Diderot) Mike Cates (Cambridge) Yariv Kafri (Technion Haifa) Matthias Krüger (MPI Göttingen) Christian Rohwer (MPI Stuttgart) Nikta Fakhri (MIT) Joakim Stenhammar (Lund) Aparna Baskaran (Brandeis) Yaouen Fily (Florida Atlantic) Yongjoo Baek (Cambridge) PLS fellowship Solon, Cates and Tailleur, EPJST 2015 Solon, Fily, Baskaran, Cates, Kafri, Kardar and Tailleur, Nature Physics 2015 Solon, Stenhammar, Wittkowski, Kardar, Kafri, Cates, Tailleur, Phys. Rev. Lett Nikola, Solon, Kafri, Kardar, Voituriez, Tailleur, Phys. Rev. Lett Baek, Solon, Xu, Nikola, Kafri, Phys. Rev. Lett Rohwer, Solon, Kardar, Krüger, arxiv 2017
Long-range forces and phase separation in simple active fluids
1/21 Long-range forces and phase separation in simple active fluids Alex Solon, PLS fellow, MIT Harvard Kid s seminar, September 19th 2017 Active matter 2/21 Stored energy Mechanical energy Self-propelled
More informationPressure and phase separation in active matter
1/33 Pressure and phase separation in active matter Alex Solon Technion, November 13th 2016 Active matter 2/33 Stored energy Mechanical energy Self-propelled particles Active matter 2/33 Stored energy
More informationarxiv: v1 [cond-mat.stat-mech] 21 Nov 2018
arxiv:1811.08829v1 [cond-mat.stat-mech] 21 Nov 2018 Forces in dry active matter Ydan Ben Dor Department of Physics and the Russell Berrie Nanotechnology Institute, Technion Israel Institute of Technology,
More informationPressure is not a state function for generic active fluids
Pressure is not a state function for generic active fluids The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation As Published Publisher
More informationUniversality in Soft Active Matter
Universality in Soft Active Matter Chiu Fan Lee Department of Bioengineering, Imperial College London, UK M.C. Escher (1938) Day and Night Universality in soft living matter Amyloid fibrils RNA granules
More informationStatistical Mechanics of Active Matter
Statistical Mechanics of Active Matter Umberto Marini Bettolo Marconi University of Camerino, Italy Naples, 24 May,2017 Umberto Marini Bettolo Marconi (2017) Statistical Mechanics of Active Matter 2017
More informationAn introduction to the statistical physics of active matter: motility-induced phase separation and the generic instability of active gels
Eur. Phys. J. Special Topics 225, 2065 2077 (2016) The Author(s) 2016 DOI: 10.1140/epjst/e2016-60084-6 THE EUROPEAN PHYSICAL JOURNAL SPECIAL TOPICS Regular Article An introduction to the statistical physics
More informationActive Matter Lectures for the 2011 ICTP School on Mathematics and Physics of Soft and Biological Matter Lecture 3: Hydrodynamics of SP Hard Rods
Active Matter Lectures for the 2011 ICTP School on Mathematics and Physics of Soft and Biological Matter Lecture 3: of SP Hard Rods M. Cristina Marchetti Syracuse University Baskaran & MCM, PRE 77 (2008);
More informationTHREE-BODY INTERACTIONS DRIVE THE TRANSITION TO POLAR ORDER IN A SIMPLE FLOCKING MODEL
THREE-BODY INTERACTIONS DRIVE THE TRANSITION TO POLAR ORDER IN A SIMPLE FLOCKING MODEL Purba Chatterjee and Nigel Goldenfeld Department of Physics University of Illinois at Urbana-Champaign Flocking in
More informationarxiv: v1 [cond-mat.stat-mech] 14 Dec 2018
Lack of an equation of state for the nonequilibrium chemical potential of gases of active particles in contact Jules Guioth a) DAMTP, Centre for Mathematical Sciences, University of Cambridge, Wilberforce
More informationSupplementary Information. Directed flow of micromotors through alignment interactions with micropatterned ratchets
Supplementary Information Directed flow of micromotors through alignment interactions with micropatterned ratchets Jaideep Katuri 1,2, David Caballero 1,3,4, Raphael Voituriez 5,6, Josep Samitier 1,3,4,
More informationLight controlled motility in E.coli bacteria: from individual response to population dynamics
Light controlled motility in E.coli bacteria: from individual response to population dynamics Ph.D. Candidate: Supervisor: GIACOMO FRANGIPANE Dr. ROBERTO DI LEONARDO Escherichia Coli A model organism for
More informationBeating of grafted chains induced by active Brownian particles Qiu-song Yang, Qing-wei Fan, Zhuang-lin Shen, Yi-qi Xia, Wen-de Tian *, Kang Chen *
Beating of grafted chains induced by active Brownian particles Qiu-song Yang, Qing-wei Fan, Zhuang-lin Shen, Yi-qi Xia, Wen-de Tian *, Kang Chen * Center for Soft Condensed Matter Physics & Interdisciplinary
More informationPolymerization/depolymerization motors
Polymerization/depolymerization motors Movement formation Kuo Lab, J.H.U. http://www.nature.com/nature/journal/v407/n6807/extref/40 71026a0_S3.mov http://www.bme.jhu.edu/~skuo/movies/macrophchase.mov http://www.bme.jhu.edu/~skuo/movies/gc_filo.mov
More informationDifferent types of phase transitions for a simple model of alignment of oriented particles
Different types of phase transitions for a simple model of alignment of oriented particles Amic Frouvelle Université Paris Dauphine Joint work with Jian-Guo Liu (Duke University, USA) and Pierre Degond
More informationEmerging Multidisciplinary Fluid Sciences. International Journal of. Reprinted from
A Hydrodynamical Kinetic Theory for Self-Propelled Ellipsoidal Suspensions by Sarthok Sircar Reprinted from International Journal of Emerging Multidisciplinary Fluid Sciences Volume 2 Number 4 December
More informationQuantifying Intermittent Transport in Cell Cytoplasm
Quantifying Intermittent Transport in Cell Cytoplasm Ecole Normale Supérieure, Mathematics and Biology Department. Paris, France. May 19 th 2009 Cellular Transport Introduction Cellular Transport Intermittent
More informationLecture 4: viscoelasticity and cell mechanics
Teaser movie: flexible robots! R. Shepherd, Whitesides group, Harvard 1 Lecture 4: viscoelasticity and cell mechanics S-RSI Physics Lectures: Soft Condensed Matter Physics Jacinta C. Conrad University
More informationPHYS 563 term Paper The Flocking Transition : A Review of The Vicsek Model
PHYS 563 term Paper The Flocking Transition : A Review of The Vicsek Model Purba Chatterjee May 4, 2017 Abstract This essay reviews important results from studies on the Vicsek model, which describes a
More informationDiffuse Interface Field Approach (DIFA) to Modeling and Simulation of Particle-based Materials Processes
Diffuse Interface Field Approach (DIFA) to Modeling and Simulation of Particle-based Materials Processes Yu U. Wang Department Michigan Technological University Motivation Extend phase field method to
More informationNonlinear stability of steady flow of Giesekus viscoelastic fluid
Nonlinear stability of steady flow of Giesekus viscoelastic fluid Mark Dostalík, V. Průša, K. Tůma August 9, 2018 Faculty of Mathematics and Physics, Charles University Table of contents 1. Introduction
More informationMicrofluidic crystals: Impossible order
Microfluidic crystals: Impossible order Tsevi Beatus, Roy Bar-Ziv, T. T. Weizmann Institute International Symposium on Non-Equilibrium Soft Matter Kyoto 2008 1 Outline Micro-fluidic droplets: micron sized
More informationIPLS Retreat Bath, Oct 17, 2017 Novel Physics arising from phase transitions in biology
IPLS Retreat Bath, Oct 17, 2017 Novel Physics arising from phase transitions in biology Chiu Fan Lee Department of Bioengineering, Imperial College London, UK Biology inspires new physics Biology Physics
More informationt For l = 1 a monomer cannot be destroyed or created from nothing: = b p(2,t) a p(1,t).
IITS: Statistical Physics in Biology Assignment # 5 KU Leuven 5/31/2013 Drift, Diffusion, and Dynamic Instability 1. Treadmilling Actin: Actin filaments are long, asymmetric, polymers involved in a variety
More informationLinear Response in Fluctuational Electrodynamics
Max Planck Institute Stuttgart Linear Response in Fluctuational Electrodynamics Matthias Krüger Group Members: Artem Aerov Roberta Incardone Moritz Förster MIT - Student: Vladyslav Golyk Collaborators:
More informationActive and Driven Soft Matter Lecture 3: Self-Propelled Hard Rods
A Tutorial: From Langevin equation to Active and Driven Soft Matter Lecture 3: Self-Propelled Hard Rods M. Cristina Marchetti Syracuse University Boulder School 2009 A Tutorial: From Langevin equation
More informationFRACTAL CONCEPT S IN SURFACE GROWT H
FRACTAL CONCEPT S IN SURFACE GROWT H Albert-Läszlö Barabäs i H. Eugene Stanley Preface Notation guide x v xi x PART 1 Introduction 1 1 Interfaces in nature 1 1.1 Interface motion in disordered media 3
More informationSelf-organized Pattern Formation in Motor-Microtubule Mixtures. Abstract
Self-organized Pattern Formation in Motor-Microtubule Mixtures Sumithra Sankararaman and Gautam I. Menon arxiv:cond-mat/0307720v1 [cond-mat.stat-mech] 30 Jul 2003 The Institute of Mathematical Sciences,
More informationLecture 4: Hydrodynamics of Bacterial Suspensions. Plan
Lecture 4: Hydrodynamics of Bacterial Suspensions M. Cristina Marchetti Syracuse University Boulder School 2009 Aphrodite Ahmadi (SU SUNY Cortland) Shiladitya Banerjee (SU) Aparna Baskaran (SU Brandeis)
More informationarxiv:cond-mat/ v1 [cond-mat.stat-mech] 29 Nov 2006
NOVEL TYPE OF PHASE TRANSITION IN A SYSTEM arxiv:cond-mat/0611743v1 [cond-mat.stat-mech] 9 Nov 006 OF SELF-DRIVEN PARTICLES Tamás Vicsek, a,b András Czirók, a Eshel Ben-Jacob, c Inon Cohen, c and Ofer
More informationSupplementary Figures:
Supplementary Figures: Supplementary Figure 1: Simulations with t(r) 1. (a) Snapshots of a quasi- 2D actomyosin droplet crawling along the treadmilling direction (to the right in the picture). There is
More informationCollective dynamics of self-propelled particles: from crystallization to turbulence
Collective dynamics of self-propelled particles: from crystallization to turbulence Nano-Seminar, Materialwissenschaften TU Dresden, Germany von Hartmut Löwen, Heinrich-Heine-Universität Düsseldorf I)
More informationFrom a Mesoscopic to a Macroscopic Description of Fluid-Particle Interaction
From a Mesoscopic to a Macroscopic Description of Fluid-Particle Interaction Carnegie Mellon University Center for Nonlinear Analysis Working Group, October 2016 Outline 1 Physical Framework 2 3 Free Energy
More informationFLOCKS, COLLECTIVE MOTION
FLOCKS, COLLECTIVE MOTION AND DRY ACTIVE MATTER Gareth Alexander Department of Physics and Centre for Complexity Science, University of Warwick Nonequilibrium statistical mechanics & active matter school
More informationBiological motors 18.S995 - L10
Biological motors 18.S995 - L1 Reynolds numbers Re = UL µ = UL m the organism is mo E.coli (non-tumbling HCB 437) Drescher, Dunkel, Ganguly, Cisneros, Goldstein (211) PNAS Bacterial motors movie: V. Kantsler
More informationlim = F F = F x x + F y y + F z
Physics 361 Summary of Results from Lecture Physics 361 Derivatives of Scalar and Vector Fields The gradient of a scalar field f( r) is given by g = f. coordinates f g = ê x x + ê f y y + ê f z z Expressed
More informationIrreversibility and the arrow of time in a quenched quantum system. Eric Lutz Department of Physics University of Erlangen-Nuremberg
Irreversibility and the arrow of time in a quenched quantum system Eric Lutz Department of Physics University of Erlangen-Nuremberg Outline 1 Physics far from equilibrium Entropy production Fluctuation
More informationBiophysics Biological soft matter
Biophysics Biological soft matter!"#$%&'(&)%*+,-.& /"#$%("%*+,-.0."122,13$(%4(5+& Biophysics lectures outline Biological soft matter 1. Biopolymers 2. Molecular motors 3. The cytoskeleton Biophysics 1.
More informationActive dumbbells. Leticia F. Cugliandolo. Université Pierre et Marie Curie Sorbonne Universités
Active dumbbells Leticia F. Cugliandolo Université Pierre et Marie Curie Sorbonne Universités leticia@lpthe.jussieu.fr www.lpthe.jussieu.fr/ leticia Work in collaboration with D. Loi & S. Mossa (Grenoble,
More informationDynamical Systems and Chaos Part II: Biology Applications. Lecture 10: Coupled Systems. Ilya Potapov Mathematics Department, TUT Room TD325
Dynamical Systems and Chaos Part II: Biology Applications Lecture 10: Coupled Systems. Ilya Potapov Mathematics Department, TUT Room TD325 Foreword In order to model populations of physical/biological
More informationMultiscale modeling of active fluids: selfpropellers and molecular motors. I. Pagonabarraga University of Barcelona
Multiscale modeling of active fluids: selfpropellers and molecular motors I. Pagonabarraga University of Barcelona Introduction Soft materials weak interactions Self-assembly Emergence large scale structures
More informationSeparation of molecules by chirality using circularly polarized light
Separation of molecules by chirality using circularly polarized light Anton Andreev Boris Spivak Department of Physics University of Washington Phys. Rev. Lett. 102, 063004 (2009) Quantum Coherent Properties
More informationarxiv: v1 [cond-mat.stat-mech] 15 Sep 2007
Current in a three-dimensional periodic tube with unbiased forces Bao-quan Ai a and Liang-gang Liu b a School of Physics and Telecommunication Engineering, South China Normal University, 56 GuangZhou,
More informationElectro-hydrodynamic propulsion of counter-rotating Pickering drops. P. Dommersnes*, A. Mikkelsen, J.O. Fossum
Electro-hydrodynamic propulsion of counter-rotating Pickering drops P. Dommersnes*, A. Mikkelsen, J.O. Fossum 1 Department of Physics, Norwegian University of Science and Technology, Trondheim, Norway
More informationIntroduction to the mathematical modeling of multi-scale phenomena
Introduction to the mathematical modeling of multi-scale phenomena Diffusion Brownian motion Brownian motion (named after botanist Robert Brown) refers to the random motion of particles suspended in a
More informationSingle and collective fiber dynamics in micro-flows. Anke Lindner, PMMH-ESPCI, Paris, France
Single and collective fiber dynamics in micro-flows Anke Lindner, PMMH-ESPCI, Paris, France COST conference, Porto, 2016 Fibers in interaction with viscous flows Industrial applications Paper industry
More informationDiffusion in Reduced Dimensions. Clemens Bechinger 2. Physikalisches Institut, Universität Stuttgart
Diffusion in Reduced Dimensions Clemens Bechinger 2. Physikalisches Institut, Universität Stuttgart Diffusion in narrow Channels t = 0 t = t 1 3D, 2D: mixing 1D: sequence unchanged 1D diffusion entirely
More informationCritical Phenomena under Shear Flow
Critical Phenomena under Shear Flow Pavlik Lettinga, Hao Wang, Jan K.G. Dhont Close to a gas-liquid critical point, effective interactions between particles become very long ranged, and the dynamics of
More informationMohammad Maghrebi BPS Building Michigan State University East Lansing, MI Education. Appointments. Honors and Awards
Mohammad Maghrebi 4241 BPS Building Michigan State University East Lansing, MI 48824 Cell (phone): (617) 999-7238 E-mail: maghrebi@pa.msu.edu www.pa.msu.edu/ maghrebi Education 2008 2013 Ph.D. Physics,
More informationarxiv: v2 [cond-mat.soft] 3 Oct 2013
A continuum theory of phase separation kinetics for active Brownian particles Joakim Stenhammar, Adriano Tiribocchi, Rosalind J. Allen, Davide Marenduzzo, and Michael E. Cates arxiv:137.4373v [cond-mat.soft]
More informationModeling and Analysis of Dynamic Systems
Modeling and Analysis of Dynamic Systems Dr. Guillaume Ducard Fall 2017 Institute for Dynamic Systems and Control ETH Zurich, Switzerland G. Ducard c 1 / 34 Outline 1 Lecture 7: Recall on Thermodynamics
More informationBROWNIAN DYNAMICS SIMULATIONS WITH HYDRODYNAMICS. Abstract
BROWNIAN DYNAMICS SIMULATIONS WITH HYDRODYNAMICS Juan J. Cerdà 1 1 Institut für Computerphysik, Pfaffenwaldring 27, Universität Stuttgart, 70569 Stuttgart, Germany. (Dated: July 21, 2009) Abstract - 1
More informationMolecular dynamics study of the lifetime of nanobubbles on the substrate
Molecular dynamics study of the lifetime of nanobubbles on the substrate - Links of Hierarchies KOHNO Shunsuke Division of Physics and Astronomy, Graduate School of Science, Kyoto University Outline Introduction
More informationDNS of colloidal dispersions using the smoothed profile method: formulation and applications
Hokusai, 1831 Workshop III: High Performance and Parallel Computing Methods and Algorithms for Multiphase/Complex Fluids Institute for Mathematical Sciences, NUS, Singapore 2 6 March 2015 DNS of colloidal
More informationA Fluctuating Immersed Boundary Method for Brownian Suspensions of Rigid Particles
A Fluctuating Immersed Boundary Method for Brownian Suspensions of Rigid Particles Aleksandar Donev Courant Institute, New York University APS DFD Meeting San Francisco, CA Nov 23rd 2014 A. Donev (CIMS)
More informationEmergence of collective dynamics in active biological systems -- Swimming micro-organisms --
12/08/2015, YITP, Kyoto Emergence of collective dynamics in active biological systems -- Swimming micro-organisms -- Norihiro Oyama John J. Molina Ryoichi Yamamoto* Department of Chemical Engineering,
More informationHeat Transfer at Proximity
Heat Transfer at Proximity Matthias Krüger Universität Stuttgart an MPI for Intelligent Systems, Stuttgart Group Members: Artem Aerov Roberta Incarone External Stuent: Vlayslav Golyk, MIT Collaborators:
More informationModeling the Free Energy Landscape for Janus Particle Self-Assembly in the Gas Phase. Andy Long Kridsanaphong Limtragool
Modeling the Free Energy Landscape for Janus Particle Self-Assembly in the Gas Phase Andy Long Kridsanaphong Limtragool Motivation We want to study the spontaneous formation of micelles and vesicles Applications
More informationIntroduction to Polymerization Kinetics
Introduction to Polymerization Kinetics Perspecties The cytoskeletal biopolymers are largely semi-rigid rods on typical size scale of cells. We here examine their assembly kinetics in free polymerization
More informationA model of alignment interaction for oriented particles with phase transition
A model of alignment interaction for oriented particles with phase transition Amic Frouvelle ACMAC Joint work with Jian-Guo Liu (Duke University, USA) and Pierre Degond (Institut de Mathématiques de Toulouse,
More informationDynamics of an active magnetic particle in a rotating magnetic field
PHYSICAL REVIEW E 73, 021505 2006 Dynamics of an active magnetic particle in a rotating magnetic field A. Cēbers* Institute of Physics, University of Latvia, Salaspils-1, LV-2169, Latvia M. Ozols University
More informationCollective motion in an active suspension of Escherichia coli bacteria
PAPER OPEN ACCESS Collective motion in an active suspension of Escherichia coli bacteria To cite this article: 2014 New J. Phys. 16 025003 View the article online for updates and enhancements. Related
More informationAnomalous Transport and Fluctuation Relations: From Theory to Biology
Anomalous Transport and Fluctuation Relations: From Theory to Biology Aleksei V. Chechkin 1, Peter Dieterich 2, Rainer Klages 3 1 Institute for Theoretical Physics, Kharkov, Ukraine 2 Institute for Physiology,
More informationFriction of F-actin knots
Friction of F-actin knots Helmut O. Kirchner a, Sebastien Neukirch b a INM Leibniz Institute for New Materials Campus D, D-6613 Saarbrücken, Germany b CNS & UPMC Univ Paris 06 UM 7190, Institut Jean Le
More informationSwitching dynamics and bistability in blue phase devices
II Theory Xmas Workshop, Department of Physics University of Bari 20-12-2012 Switching dynamics and bistability in blue phase devices Adriano Tiribocchi SUPA School of Physics and Astronomy, UK Outline
More informationMesoscale fluid simulation of colloidal systems
Mesoscale fluid simulation of colloidal systems Mingcheng Yang Institute of Physics, CAS Outline (I) Background (II) Simulation method (III) Applications and examples (IV) Summary Background Soft matter
More informationExpansion of 1/r potential in Legendre polynomials
Expansion of 1/r potential in Legendre polynomials In electrostatics and gravitation, we see scalar potentials of the form V = K d Take d = R r = R 2 2Rr cos θ + r 2 = R 1 2 r R cos θ + r R )2 Use h =
More informationWhy do we need to study thermodynamics? Examples of practical thermodynamic devices:
Why do we need to study thermodynamics? Knowledge of thermodynamics is required to design any device involving the interchange between heat and work, or the conversion of material to produce heat (combustion).
More informationarxiv: v1 [cond-mat.soft] 22 Dec 2017
Active ideal sedimentation: Exact two-dimensional steady states Sophie Hermann and Matthias Schmidt Theoretische Physik II, Physikalisches Institut, Universität Bayreuth, D-9544 Bayreuth, Germany (Dated:
More informationEquilibrium correlations and heat conduction in the Fermi-Pasta-Ulam chain.
Equilibrium correlations and heat conduction in the Fermi-Pasta-Ulam chain. Abhishek Dhar International centre for theoretical sciences TIFR, Bangalore www.icts.res.in Suman G. Das (Raman Research Institute,
More informationBacterial Chemotaxis
Bacterial Chemotaxis Bacteria can be attracted/repelled by chemicals Mechanism? Chemoreceptors in bacteria. attractant Adler, 1969 Science READ! This is sensing, not metabolism Based on genetic approach!!!
More informationInterfaces with short-range correlated disorder: what we learn from the Directed Polymer
Interfaces with short-range correlated disorder: what we learn from the Directed Polymer Elisabeth Agoritsas (1), Thierry Giamarchi (2) Vincent Démery (3), Alberto Rosso (4) Reinaldo García-García (3),
More informationComputational Analysis of an Imploding Gas:
1/ 31 Direct Numerical Simulation of Navier-Stokes Equations Stephen Voelkel University of Notre Dame October 19, 2011 2/ 31 Acknowledges Christopher M. Romick, Ph.D. Student, U. Notre Dame Dr. Joseph
More informationDynamical Self-regulation in Self-propelled Particle Flows
Dynamical Self-regulation in Self-propelled Particle Flows Arvind Gopinath, Michael F. Hagan, M. Cristina Marchetti 2 and Aparna Baskaran Martin Fisher School of Physics, Brandeis University, Waltham,
More informationCurrent-Induced Domain-Wall Dynamics in Ferromagnetic Nanowires
Current-Induced Domain-Wall Dynamics in Ferromagnetic Nanowires Benjamin Krüger 17.11.2006 1 Model The Micromagnetic Model Current Induced Magnetisation Dynamics Phenomenological Description Experimental
More informationExponential Growth and Filamentary Structure of Nonlinear Ballooning Instability 1
Exponential Growth and Filamentary Structure of Nonlinear Ballooning Instability 1 Ping Zhu in collaboration with C. C. Hegna and C. R. Sovinec University of Wisconsin-Madison Sherwood Conference Denver,
More informationSupplementary Methods
Supplementary Methods Modeling of magnetic field In this study, the magnetic field was generated with N52 grade nickel-plated neodymium block magnets (K&J Magnetics). The residual flux density of the magnets
More informationMotility-Induced Phase Separation
arxiv:1406.3533v1 [cond-mat.soft] 13 Jun 2014 Xxxx. Xxx. Xxx. Xxx. YYYY. 00:1 26 This article s doi: 10.1146/((please add article doi)) Copyright c YYYY by Annual Reviews. All rights reserved Motility-Induced
More informationFor slowly varying probabilities, the continuum form of these equations is. = (r + d)p T (x) (u + l)p D (x) ar x p T(x, t) + a2 r
3.2 Molecular Motors A variety of cellular processes requiring mechanical work, such as movement, transport and packaging material, are performed with the aid of protein motors. These molecules consume
More informationcontact line dynamics
contact line dynamics part 2: hydrodynamics dynamic contact angle? lubrication: Cox-Voinov theory maximum speed for instability corner shape? dimensional analysis: speed U position r viscosity η pressure
More informationA model of alignment interaction for oriented particles with phase transition
A model of alignment interaction for oriented particles with phase transition Amic Frouvelle Institut de Mathématiques de Toulouse Joint work with Jian-Guo Liu (Duke Univ.) and Pierre Degond (IMT) Amic
More informationarxiv: v1 [cond-mat.stat-mech] 5 Jan 2015
Fluctuation Induced Forces in Non-equilibrium (Diffusive) Dynamics Avi Aminov and Yariv Kafri Department of Physics, Technion, Haifa 32000, Israel Mehran Kardar Department of Physics, Massachusetts Institute
More informationOne- and two-particle microrheology in solutions of actin, fd-virus and inorganic rods
Microrheology of Biopolymers (ITP Complex Fluids Program 3/05/02) One- and two-particle microrheology in solutions of actin, fd-virus and inorganic rods Christoph Schmidt Vrije Universiteit Amsterdam Collaborators:
More informationHydrodynamic Modes of Incoherent Black Holes
Hydrodynamic Modes of Incoherent Black Holes Vaios Ziogas Durham University Based on work in collaboration with A. Donos, J. Gauntlett [arxiv: 1707.xxxxx, 170x.xxxxx] 9th Crete Regional Meeting on String
More informationarxiv: v1 [cond-mat.stat-mech] 26 Jun 2015
EPJ manuscript No. (will be inserted by the editor First-passage time of run-and-tumble particles. Angelani 1a, R. Di eonardo 1 and M. Paoluzzi 1 CNR-IPCF, UOS Roma c/o Dip. di Fisica Università Sapienza,
More information1. Comparison of stability analysis to previous work
. Comparison of stability analysis to previous work The stability problem (6.4) can be understood in the context of previous work. Benjamin (957) and Yih (963) have studied the stability of fluid flowing
More informationParticle-based display technologies
Ian Morrison Cabot Corporation Particle based displays Reflective not emissive Adjusts with ambient light Thin, flexible, low power? The electronics is a real challenge. Require high resistivity so particles
More informationarxiv: v2 [cond-mat.stat-mech] 30 Jul 2013
Effective run-and-tumble dynamics of bacteria baths arxiv:135.6475v2 [cond-mat.stat-mech] 3 Jul 213 M. Paoluzzi, R. Di Leonardo, L. Angelani CNR-IPCF, UOS Roma, Dip. Fisica, Università Sapienza, P. le
More informationVortex motion. Wasilij Barsukow, July 1, 2016
The concept of vorticity We call Vortex motion Wasilij Barsukow, mail@sturzhang.de July, 206 ω = v vorticity. It is a measure of the swirlyness of the flow, but is also present in shear flows where the
More informationUnderstanding Nanoplasmonics. Greg Sun University of Massachusetts Boston
Understanding Nanoplasmonics Greg Sun University of Massachusetts Boston Nanoplasmonics Space 100pm 1nm 10nm 100nm 1μm 10μm 100μm 1ns 100ps 10ps Photonics 1ps 100fs 10fs 1fs Time Surface Plasmons Surface
More informationMARTIN RICHARD EVANS
MARTIN RICHARD EVANS LIST OF PUBLICATIONS Date: May 26, 2017 The numbers of citations for articles registered on the Web of Science Database as of 26/05/2017 are indicated in square brackets. For articles
More informationVortices in Superfluid MODD-Problems
Vortices in Superfluid MODD-Problems May 5, 2017 A. Steady filament (0.75) Consider a cylindrical beaker (radius R 0 a) of superfluid helium and a straight vertical vortex filament in its center Fig. 2.
More informationThe current reversal phenomenon of brownian particles in a two-dimensional potential with Lévy noise
The current reversal phenomenon of brownian particles in a two-dimensional potential with Lévy noise Bing Wang, Zhongwei Qu, Xuechao Li Department of Physics and Mathematics, Anhui University of Science
More informationNon-Equilibrium Fluctuations in Expansion/Compression Processes of a Single-Particle Gas
Non-Equilibrium Fluctuations in Expansion/Compression Processes o a Single-Particle Gas Hyu Kyu Pa Department o Physics, UNIST IBS Center or Sot and Living Matter Page 1 November 8, 015, Busan Nonequilibrium
More informationHydrodynamic interactions and wall drag effect in colloidal suspensions and soft matter systems
Hydrodynamic interactions and wall drag effect in colloidal suspensions and soft matter systems Maciej Lisicki" Institute of Theoretical Physics" Faculty of Physics, University of Warsaw" Poland SOMATAI
More informationActive mechanics of cells. Tetsuya Hiraiwa The University of Tokyo
Active mechanics of cells Tetsuya Hiraiwa The University of Tokyo 100μm Active mechanics of cells Tetsuya Hiraiwa The University of Tokyo (HeLa cells) Cellular scale (~ several 10μm) Subcellular scale
More informationA model of alignment interaction for oriented particles with phase transition
A model of alignment interaction for oriented particles with phase transition Amic Frouvelle Archimedes Center for Modeling, Analysis & Computation (ACMAC) University of Crete, Heraklion, Crete, Greece
More informationNOTE. Application of Contour Dynamics to Systems with Cylindrical Boundaries
JOURNAL OF COMPUTATIONAL PHYSICS 145, 462 468 (1998) ARTICLE NO. CP986024 NOTE Application of Contour Dynamics to Systems with Cylindrical Boundaries 1. INTRODUCTION Contour dynamics (CD) is a widely used
More informationFluids with dipolar coupling
Fluids with dipolar coupling Rosensweig instability M. D. Cowley and R. E. Rosensweig, J. Fluid Mech. 30, 671 (1967) CO.CO.MAT SFB/TRR21 STUTTGART, ULM, TÜBINGEN FerMix 2009 Meeting, Trento A Quantum Ferrofluid
More informationFundamentals of Magnetic Island Theory in Tokamaks
Fundamentals of Magnetic Island Theory in Tokamaks Richard Fitzpatrick Institute for Fusion Studies University of Texas at Austin Austin, TX, USA Talk available at http://farside.ph.utexas.edu/talks/talks.html
More information