Amy Driskell. Laboratories of Analytical Biology National Museum of Natural History Smithsonian Institution, Wash. DC
|
|
|
- Curtis Garrett
- 6 years ago
- Views:
Transcription
1 DNA Barcoding Amy Driskell Laboratories of Analytical Biology National Museum of Natural History Smithsonian Institution, Wash. DC 1
2 Outline 1. Barcoding in general 2. Uses & Examples 3. Barcoding Bocas Algae 4. Data, Analysis, etc. 2
3 What is a DNA barcode? A fingerprint for identification of everything A short, easily and universally amplifiable, and reasonably variable piece of DNA 3
4 Requirements For Barcode label in GenBank, for Reference in BOLD Sequence is from a vouchered specimen Re identify Voucher meta information ti required: GPS coordinates, photographs (in situ, in some cases), collector and identifier data Re collect DNA sequence is high quality (minimum length, minimum coverage, minimum quality scores Compare Raw data (chromatograms) publicly available Re analyze 4
5 Organizations Consortium for the Barcode of Life (CBOL) ( i d Barcode of Life Database (BOLD) ( g) International Barcode of Life (ibol) ( FishBOL, All Birds Barcoding Initiative, MarBOL, etc. etc. 5
6 Barcode Markers Animals: Mitochondrial cytochrome oxidase subunit I (CO1/COX1) ~ 650 bp BUT, not variable in cnidarians, 16S rdna historically more informative in many groups (e.g. frogs, some crustaceans). Second marker possible. Fungi: Nuclear internal transcribed spacer (ITS) Non coding gene and difficult to align. But long history in fungal studies, large existing databases, CO1 contains ti introns. 6
7 Barcode Markers Red & Brown Algae: CO1 Not nearly as universally amplifiable as in animals, requires many different primers Green Plants: Not decided SI botanists promote rbcl and the trnh psbb spacer Others prefer for rbcl and matk All are chloroplast genes Green algae? Still not clear 7
8 DNA Barcoding is an imperfect science Evolutionary History: Hybridization (plastid genomes) Pseudogenes Heteroplasmy or multiple copies (nuclear markers) Lineage sorting, recent speciation iti Slow rates of sequence divergence Practical Difficulties Lack of universality Co amplification Incomplete sampling Lack of taxonomic experts 8
9 Barcode of Life Database (BOLD) 9
10 Today s Statistics BOLD Total: 570,000 Species: 62,000 Reference : 234,000 Ref species: 13,774 GenBank Barcode keyword: 37,000 10
11 Algal Barcodes in BOLD 11
12 SI s Barcoding Philosophy Collaborate taxonomic experts, students Train students, interns, other researchers Assist labsetup setup, protocol development, collecting Archive a lending library of high h quality, wellvouchered DNAs Explore biodiversity in collaboration with taxonomists and phylogeneticists. 12
13 Biologically Interesting Uses Biodiversity Exploration Discovery of sibling species Quick assessment of local diversity DNA assisted alpha taxonomy Ecological & Behavioral Studies Habitat assessment Stomach content analysis 13
14 L.A.B. Examples LAB& Bocas taxonomic workshops CeDAMAR Antarctic deep sea surveys Caribbean Fish Central American Frogs Biocode Moorea 14
15 Practical, Fundable Uses Method of identification, particularly l useful lto non experts Import/export and pest control Fisheries management Water and habitat quality assessment Partial or fragmentary sample analysis Associating different life stages 15
16 L.A.B. Examples USAF/FAA Bird Strike Project Larval Fish ID US Food & Drug Agency US Enviromental Protection Agency 16
17 Barcoding Bocas Algae Collections 2007, 2008, 2009 ~1000 specimens Red Algae: ~250 specimens sequenced Lab protocol and primer development 17
18 The Process of Barcoding 1. Extraction: methods, machines, timing 18
19 The Process of Barcoding 2. Amplification Polymerase Chain Reaction Primers 19
20 The Process of Barcoding 3. Sequencing 20
21 The Process of Barcoding Submission and organization of metadata Quality control, data processing Accuracy checking 21
22 Nov. 9-13, 2009 Website: dnabarcodes2009.org 22
DNA Barcoding: A New Tool for Identifying Biological Specimens and Managing Species Diversity
DNA Barcoding: A New Tool for Identifying Biological Specimens and Managing Species Diversity DNA barcoding has inspired a global initiative dedicated to: Creating a library of new knowledge about species
DNA barcoding is a technique for characterizing species of organisms using a short DNA sequence from a standard and agreed-upon position in the
DNA barcoding is a technique for characterizing species of organisms using a short DNA sequence from a standard and agreed-upon position in the genome. DNA barcode sequences are very short relative to
Species Identification and Barcoding. Brendan Reid Wildlife Conservation Genetics February 9th, 2010
Species Identification and Barcoding Brendan Reid Wildlife Conservation Genetics February 9th, 2010 Why do we need a genetic method of species identification? Black-knobbed Map Turtle (Graptemys nigrinoda)
DNA Barcoding and taxonomy of Glossina
DNA Barcoding and taxonomy of Glossina Dan Masiga Molecular Biology and Biotechnology Department, icipe & Johnson Ouma Trypanosomiasis Research Centre, KARI The taxonomic problem Following ~250 years of
the Belgian Network for DNA Barcoding (BeBoL)
the Belgian Network for DNA Barcoding (BeBoL) http://bebol.myspecies.info Massi Virgilio Joint Experimental Molecular Unit (RMCA-RBINS, Belgium) financed by the Fund for Scientific Research Flanders (FWO)
Microbes usually have few distinguishing properties that relate them, so a hierarchical taxonomy mainly has not been possible.
Microbial Taxonomy Traditional taxonomy or the classification through identification and nomenclature of microbes, both "prokaryote" and eukaryote, has been in a mess we were stuck with it for traditional
Microbial Taxonomy. Slowly evolving molecules (e.g., rrna) used for large-scale structure; "fast- clock" molecules for fine-structure.
Microbial Taxonomy Traditional taxonomy or the classification through identification and nomenclature of microbes, both "prokaryote" and eukaryote, has been in a mess we were stuck with it for traditional
DNA BARCODING OF PLANTS AT SHAW NATURE RESERVE USING matk AND rbcl GENES
DNA BARCODING OF PLANTS AT SHAW NATURE RESERVE USING matk AND rbcl GENES LIVINGSTONE NGANGA. Missouri Botanical Garden. Barcoding is the use of short DNA sequences to identify and differentiate species.
DNA Barcoding Fishery Resources:
DNA Barcoding Fishery Resources: A case study in Shandong Costal Water Shufang Liu Laboratory of Molecular ecology of fishery resources Yellow Sea Fisheries Research Institute (YSFRI) Chinese Academy of
DNA Barcoding Analyses of White Spruce (Picea glauca var. glauca) and Black Hills Spruce (Picea glauca var. densata)
Southern Adventist Univeristy KnowledgeExchange@Southern Senior Research Projects Southern Scholars 4-4-2010 DNA Barcoding Analyses of White Spruce (Picea glauca var. glauca) and Black Hills Spruce (Picea
Introduction to Biosystematics. Course Website: Lecture 1: Introduction to Biological Systematics Outline: The role and value of Systematics
Introduction to Biosystematics Course Website: http://homepages.ucalgary.ca/~dsikes/courses.htm Check weekly for lecture updates, readings, etc. D. S. Sikes University of Calgary There have been many authorities
Other matters: * Term paper: 11 (Monday) Nov 15 (Friday), 16, 17? Final * Wednesday, 11 December (8 11 AM)
Nov 4-Nov 8 Nov 11-15 DNA barcoding Molecular systematics in plants (Les) Lab 8: likelihood (Garli and/or RAxML) and Bayesian analyses (Wagner in Austin) Molecular systematics in animals (Simon) (Wagner
Eric D. Stein Biology Department
Eric D. Stein Biology Department The Promise of Molecular Methods Faster answers Weeks vs. months Less expensive Better data Recognizing misidentifications Improving taxonomic keys Helping with difficult
Plant Names and Classification
Plant Names and Classification Science of Taxonomy Identification (necessary!!) Classification (order out of chaos!) Nomenclature (why not use common names?) Reasons NOT to use common names Theophrastus
SPECIATION. REPRODUCTIVE BARRIERS PREZYGOTIC: Barriers that prevent fertilization. Habitat isolation Populations can t get together
SPECIATION Origin of new species=speciation -Process by which one species splits into two or more species, accounts for both the unity and diversity of life SPECIES BIOLOGICAL CONCEPT Population or groups
PHYLOGENY AND SYSTEMATICS
AP BIOLOGY EVOLUTION/HEREDITY UNIT Unit 1 Part 11 Chapter 26 Activity #15 NAME DATE PERIOD PHYLOGENY AND SYSTEMATICS PHYLOGENY Evolutionary history of species or group of related species SYSTEMATICS Study
DRMREEF: DNA taxonomy and Recruitment Monitoring of the Coral Reef Marine Organisms
DRMREEF: DNA taxonomy and Recruitment Monitoring of the Coral Reef Marine Organisms 2015. 05. 13 Youn-Ho Lee Korea Institute of Ocean Science and Technology I. Objectives To enhance national and regional
Shaw Nature Reserve. Preserving and documenting diversity By Garrett Billings
Shaw Nature Reserve Preserving and documenting diversity By Garrett Billings History of Shaw Nature Reserve Burned frequently Native Americans Natural fire regimes Used almost exclusively as agriculture
Microbial Taxonomy. Microbes usually have few distinguishing properties that relate them, so a hierarchical taxonomy mainly has not been possible.
Microbial Taxonomy Traditional taxonomy or the classification through identification and nomenclature of microbes, both "prokaryote" and eukaryote, has been in a mess we were stuck with it for traditional
Post-doc fellowships to non-eu researchers FINAL REPORT. Home Institute: Centro de Investigaciones Marinas, Universidad de La Habana, CUBA
Recipient: Maickel Armenteros Almanza. Post-doc fellowships to non-eu researchers FINAL REPORT Home Institute: Centro de Investigaciones Marinas, Universidad de La Habana, CUBA Promoter: Prof. Dr. Wilfrida
Molecular Markers, Natural History, and Evolution
Molecular Markers, Natural History, and Evolution Second Edition JOHN C. AVISE University of Georgia Sinauer Associates, Inc. Publishers Sunderland, Massachusetts Contents PART I Background CHAPTER 1:
SPECIES PARADOX By Colin leslie dean
SPECIES PARADOX By Colin leslie dean B,Sc, BA, B.Litt(Hons), MA, B.Litt(Hons), MA, MA (Psychoanalytic studies), Master of Psychoanalytic studies, Grad Cert (Literary studies) Gamahucher press West Geelong
Molecular Genetics for Aquatic and Marine Biodiversity Conservation
Molecular Genetics for Aquatic and Marine Biodiversity Conservation Course Code: 176040H01... Overview In a wider standpoint, conservation genetics uses a combination of ecology, molecular biology, population
CHAPTERS 24-25: Evidence for Evolution and Phylogeny
CHAPTERS 24-25: Evidence for Evolution and Phylogeny 1. For each of the following, indicate how it is used as evidence of evolution by natural selection or shown as an evolutionary trend: a. Paleontology
Curriculum Links. AQA GCE Biology. AS level
Curriculum Links AQA GCE Biology Unit 2 BIOL2 The variety of living organisms 3.2.1 Living organisms vary and this variation is influenced by genetic and environmental factors Causes of variation 3.2.2
Censusing the Sea in the 21 st Century
Censusing the Sea in the 21 st Century Nancy Knowlton & Matthieu Leray Photo: Ove Hoegh-Guldberg Smithsonian s National Museum of Natural History Estimates of Marine/Reef Species Numbers (Millions) Marine
Analysis of putative DNA barcodes for identification and distinction of native and invasive plant species
Babson College Digital Knowledge at Babson Babson Faculty Research Fund Working Papers Babson Faculty Research Fund 2010 Analysis of putative DNA barcodes for identification and distinction of native and
DNA Sequencing as a Method for Larval Identification in Odonates
DNA Sequencing as a Method for Larval Identification in Odonates Adeline Harris 121 North St Apt 3 Farmington, ME 04938 Adeline.harris@maine.edu Christopher Stevens 147 Main St Apt 1 Farmington, ME 04938
What is conservation genetics? Conservation Genetics. Are genetics important in conservation? Inbreeding and loss of genetic diversity
What is conservation genetics? B242 Evolutionary Genetics Conservation Genetics Kanchon Dasmahapatra Conservation genetics is the application of genetics to preserve species as dynamic entities capable
Single-cell genomics applied to the picobiliphytes using next-generation sequencing
Department of Ecology, Evolution and Natural Resources and Institute of Marine and Coastal Sciences Rutgers University, NJ 08901 Single-cell genomics applied to the picobiliphytes using next-generation
Conservation Genetics. Outline
Conservation Genetics The basis for an evolutionary conservation Outline Introduction to conservation genetics Genetic diversity and measurement Genetic consequences of small population size and extinction.
Use of DNA metabarcoding to identify plants from environmental samples: comparisons with traditional approaches
Use of DNA metabarcoding to identify plants from environmental samples: comparisons with traditional approaches Christine E. Edwards 1, Denise L. Lindsay 2, Thomas Minckley 3, and Richard F. Lance 2 1
Motivation for project:
Motivation for project: Shale Gas exploration and development requested of government by Oil Companies. Shale Gas Development Strategic Environment Assessment (SGD SEA) commissioned by DEA Biodiversity
Creating an e-flora for South Africa
SANBI POLICY DOCUMENT DIVISION: Biosystematics Research and Biodiversity Collections EFFECTIVE DATE: 1 April 2014 Compiler: Marianne le Roux & Janine Victor POLICY NUMBER: LAST AMENDED: Creating an e-flora
Unit of Study: Genetics, Evolution and Classification
Biology 3 rd Nine Weeks TEKS Unit of Study: Genetics, Evolution and Classification B.1) Scientific Processes. The student, for at least 40% of instructional time, conducts laboratory and field investigations
BIOLOGY I, PRE-AP. Section Description State Standard Addressed
Grade Level: 9 Course #: 3024T Length: Full Year Credits: Two Diploma: Core 40, Academic Honors Prerequisite: None COURSE DESCRIPTION: BIOLOGY I, PRE-AP This course is designed to introduce the student
Graduate Funding Information Center
Graduate Funding Information Center UNC-Chapel Hill, The Graduate School Graduate Student Proposal Sponsor: Program Title: NESCent Graduate Fellowship Department: Biology Funding Type: Fellowship Year:
Progress on DNA Barcoding of Fungi
Progress on DNA Barcoding of Fungi On 17 18 April 2011, members of the Fungal Working Group (FWG) of the Consortium for the Barcode of Life (CBOL) met in the classic surroundings of the King s Chamber
Q-bank An Online DNA Barcode Database For Identification Of Quarantine Organisms
Poster D16 Q-bank An Online DNA Barcode Database For Identification Of Quarantine Organisms presented by Ewald (J.Z.) Groenewald www.q-bank.eu EPPO European and Mediterranean Plant Protection Organization
www.lessonplansinc.com Topic: Dinosaur Evolution Project Summary: Students pretend to evolve two dinosaurs using genetics and watch how the dinosaurs adapt to an environmental change. This is a very comprehensive
Ants in the Heart of Borneo a unique possibility to join taxonomy, ecology and conservation
Ants in the Heart of Borneo a unique possibility to join taxonomy, ecology and conservation Carsten Brühl, University Landau, Germany 1 Borneo Interior mountain ranges of Central Borneo represent the only
THE ROLE OF BBSRC IN BIODIVERSITY RESEARCH
THE ROLE OF BBSRC IN BIODIVERSITY RESEARCH INTRODUCTION The aim of this document is to explain the role of biodiversity research in the delivery of the BBSRC mission, and thereby to provide guidance to
Choosing and Using a Plant DNA Barcode
Choosing and Using a Plant DNA Barcode Peter M. Hollingsworth 1 *, Sean W. Graham 2, Damon P. Little 3 1 Genetics and Conservation Section, Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom, 2
The science behind the conservation of endangered species: My experiences with Australian and Japanese bats. Kyle N. Armstrong
The science behind the conservation of endangered species: My experiences with ustralian and Japanese bats Kyle N rmstrong The Kyoto University Museum This talk Why I am a Zoologist / Conservation Biologist
Building the Tree of Life
Building the Tree of Life THINK ABOUT IT The process of identifying and naming all known organisms, living and extinct, is a huge first step toward the goal of systematics. Yet naming organisms is only
Choosing and Using a Plant DNA Barcode
Review Choosing and Using a Plant DNA Barcode Peter M. Hollingsworth 1 *, Sean W. Graham 2, Damon P. Little 3 1 Genetics and Conservation Section, Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom,
DNA sequence collection at CNR-IPSP: a resource for nematode identification
DNA sequence collection at CNR-IPSP: a resource for nematode identification Francesca De Luca CNR Istituto per la Protezione Sostenibile delle Piante, S.S. Bari email: francesca.deluca@ipsp.cnr.it EPPO
Expression of nuclearencoded. photosynthesis in sea slug (Elysia chlorotica)
Expression of nuclearencoded proteins for photosynthesis in sea slug (Elysia chlorotica) Timothy Youngblood Writer s Comment: This paper was written as an assignment for UWP 102B instructed by Jared Haynes.
5/31/17. Week 10; Monday MEMORIAL DAY NO CLASS. Page 88
Week 10; Monday MEMORIAL DAY NO CLASS Page 88 Week 10; Wednesday Announcements: Family ID final in lab Today Final exam next Tuesday at 8:30 am here Lecture: Species concepts & Speciation. What are species?
College of Arts and Sciences, University of Oregon (Fall 2014)
Curriculum map Biology B.S./B.A. (Marine Biology LOs on page 4) Learning outcomes (LOs): Having completed a major in Biology, a student will demonstrate: 1. A broad-based knowledge of biology at multiple
Top predators and edna Some ecological applications
Top predators and edna Some ecological applications Karl Lundström karl.lundstrom@slu.se Swedish University of Agricultural Sciences Department of Aquatic Resources edna in environmental monitoring FOMA
Biology Assessment. Eligible Texas Essential Knowledge and Skills
Biology Assessment Eligible Texas Essential Knowledge and Skills STAAR Biology Assessment Reporting Category 1: Cell Structure and Function The student will demonstrate an understanding of biomolecules
Morphological and Molecular Techniques for the Diagnosis of Nematodes
Morphological and Molecular Techniques for the Diagnosis of Nematodes Jon Eisenback Professor of Plant Nematology Virginia Tech he internet may contain incorrect information regarding species What is
The Phylogenetic Reconstruction of the Grass Family (Poaceae) Using matk Gene Sequences
The Phylogenetic Reconstruction of the Grass Family (Poaceae) Using matk Gene Sequences by Hongping Liang Dissertation submitted to the Faculty of the Virginia Polytechnic Institute and State University
Postgraduate teaching for the next generation of taxonomists
Postgraduate teaching for the next generation of taxonomists Alfried P. Vogler Professor of Molecular Systematics Imperial College London and Natural History Museum MSc in Taxonomy and Biodiversity MRes
STAAR Biology Assessment
STAAR Biology Assessment Reporting Category 1: Cell Structure and Function The student will demonstrate an understanding of biomolecules as building blocks of cells, and that cells are the basic unit of
Manuscript accepted for publication in Hydrobiologia. Barcoded DNA: Application to Rotifer Phylogeny, Evolution, and Systematics
Manuscript accepted for publication in Hydrobiologia Barcoded DNA: Application to Rotifer Phylogeny, Evolution, and Systematics C. William Birky Jr. Department of Ecology and Evolutionary Biology and Graduate
Semester III. Semster I PLANT ANATOMY BO1141
Semster I PLANT ANATOMY BO1141 Understand basic anatomical features of monocot and dicot plants Able to identify different types of tissues and tissue systems in plants Know the basic concepts in reproductive
Middle School. Teacher s Guide MICROPLANTS MAJOR SPONSOR:
Middle School Teacher s Guide MICROPLANTS MAJOR SPONSOR: Introduction As technology continues to rapidly evolve, scientists are able to collect and store more data. Some scientists find themselves with
Biol/Env St 204 Quiz 2 Spring 2008
Biol/Env St 204 Quiz 2 Spring 2008 Name: 40 points Short-Answer Section (20 points total) 1. In the reading Interview with a Fungus, why did Mr. Pilobolus conclude that fungi characterize mankind as expendable?
Proceedings of Association of Pacific Rim Universities (APRU) Research Symposium on University Museums: Forming a University Museum Collection
Proceedings of Association of Pacific Rim Universities (APRU) Research Symposium on University Museums: Forming a University Museum Collection Network as the Core of Frontier Research O-10 The Beaty Biodiversity
The Origin of Species
The Origin of Species A. Macroevolution: Up to this point we have discussed changes in alleles or microevolution, with evolution this is the evolution of new. is the origin of a new species. There are
Workshop on barcoded DNA: application to rotifer phylogeny, evolution, and systematics
Hydrobiologia (2007) 593:175 183 DOI 10.1007/s10750-007-9052-y ADVANCES IN ROTIFER RESEARCH Workshop on barcoded DNA: application to rotifer phylogeny, evolution, and systematics C. William Birky Jr. Ó
Heredity and Human Development
Grade 7 Science, Quarter 4, Unit 4.1 Heredity and Human Development Overview Number of instructional days: 15 (1 day = 45 minutes) Content to be learned Select evidence that supports the concept that human
SPECIES OF ARCHAEA ARE MORE CLOSELY RELATED TO EUKARYOTES THAN ARE SPECIES OF PROKARYOTES.
THE TERMS RUN AND TUMBLE ARE GENERALLY ASSOCIATED WITH A) cell wall fluidity. B) cell membrane structures. C) taxic movements of the cell. D) clustering properties of certain rod-shaped bacteria. A MAJOR
Minor Research Project
Executive Summary Minor Research Project DNA BARCODING OF MURDANNIA (COMMELINACEAE) IN WESTERN GHATS MRP (S)-1409/11-12/KLMG002/UGC-SWRO By Rogimon P. Thomas Assistant Professor Department of Botany CMS
Ph ylogeography. A guide to the study of the spatial distribution of Seahorses. By Leila Mougoui Bakhtiari
Ph ylogeography A guide to the study of the spatial distribution of Seahorses By Leila Mougoui Bakhtiari Contents An Introduction to Phylogeography JT Bohem s Resarch Map of erectu s migration Conservation
Aspergillus DNA barcoding
Aspergillus DNA barcoding progress so far János Varga,, Martin Meijer & Robert A. Samson What is DNA barcoding? DNA barcoding is a taxonomic method which uses a short genetic marker in an organism's (mitochondrial)
Microbial Activity in the Rhizosphere
K. G. Mukerji C. Manoharachary J. Singh (Eds.) Microbial Activity in the Rhizosphere With 35 Figures 4y Springer 1 Rhizosphere Biology - an Overview 1 Chakravarthula Manoharachary, Krishna G. Mukerji 1.1
Handling Fungal data in MoBeDAC
Handling Fungal data in MoBeDAC Jason Stajich UC Riverside Fungal Taxonomy and naming undergoing a revolution One fungus, one name http://www.biology.duke.edu/fungi/ mycolab/primers.htm http://www.biology.duke.edu/fungi/
Program Specific Outcomes: PSO of B. Sc., Zoology
Program Specific Outcomes: PSO of B. Sc., Zoology Demonstrated a broad understood of animal diversity, including knowledge of the scientific classification and evolutionary relationships of major groups
Identification of COI partial sequences in two closely related frog species, Rana dalmatina and Rana temporaria
HERPETOLOGICA ROMANICA Vol. 4, 2010, pp.1-6 ISSN: 1842-9203 Article No. 041101 Identification of COI partial sequences in two closely related frog species, Rana dalmatina and Rana temporaria Béla MAROSI
Chapter 19: Taxonomy, Systematics, and Phylogeny
Chapter 19: Taxonomy, Systematics, and Phylogeny AP Curriculum Alignment Chapter 19 expands on the topics of phylogenies and cladograms, which are important to Big Idea 1. In order for students to understand
THE STUDY OF BIOLOGY Biology is the study of life and the interactions between living things and their nonliving environment.
BIOLOGY 1 COURSE SYLLABUS A General Individualized Education Plan (GIEP) is developed annually which defines the student s program for the year and includes goals, objectives and evaluation procedures
National Survey on the Natural Environment of Japan. Hajime Hirosawa Biodiversity Center of Japan Ministry of the Environment (MOE)
National Survey on the Natural Environment of Japan Hajime Hirosawa Biodiversity Center of Japan Ministry of the Environment (MOE) Biodiversity Center of Japan, MOE Establishment: 1998 Purpose: to encourage
EVOLUTION Unit 1 Part 9 (Chapter 24) Activity #13
AP BIOLOGY EVOLUTION Unit 1 Part 9 (Chapter 24) Activity #13 NAME DATE PERIOD SPECIATION SPECIATION Origin of new species SPECIES BIOLOGICAL CONCEPT Population or groups of populations whose members have
Investigation 3: Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST
Investigation 3: Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST Introduction Bioinformatics is a powerful tool which can be used to determine evolutionary relationships and
California Biology Handbook... CA1
California Biology Handbook........................... CA1 The California Biology Handbook includes correlations of the Biology/Life Science standards to the content in Biology: The Dynamics of Life. Also
PLANT BIOLOGY (PBIO) Plant Biology (PBIO) 1
Plant Biology (PBIO) 1 PLANT BIOLOGY (PBIO) PBIO 1052 How Plants Shaped Our World (LN) Description: This course is an eclectic dive into the world of plants and their influence on human society. Students
Draft document version 0.6; ClustalX version 2.1(PC), (Mac); NJplot version 2.3; 3/26/2012
Comparing DNA Sequences to Determine Evolutionary Relationships of Molluscs This activity serves as a supplement to the online activity Biodiversity and Evolutionary Trees: An Activity on Biological Classification
CS612 - Algorithms in Bioinformatics
Fall 2017 Databases and Protein Structure Representation October 2, 2017 Molecular Biology as Information Science > 12, 000 genomes sequenced, mostly bacterial (2013) > 5x10 6 unique sequences available
Curation of Zoological Collections
Entomologie II Managing and Curating Museum Collections II: Curation of Zoological Collections Part 1: Entomological Collections [im Rahmen des Workshopprogramms der Goethe Graduate Academy (GRADE), 19.
Pleione praecox. Painting by: Ms. Hemalata Pradhan
Introduction Painting by: Ms. Hemalata Pradhan Pleione praecox 1 INTRODUCTION DNA barcoding is an innovative molecular technique, which uses short and agreed upon DNA sequence(s) from either nuclear or/and
Background: Comment [1]: Comment [2]: Comment [3]: Comment [4]: mass spectrometry
![Background: Comment [1]: Comment [2]: Comment [3]: Comment [4]: mass spectrometry](/thumbs/78/77840982.jpg "Background: Comment [1]: Comment [2]: Comment [3]: Comment [4]: mass spectrometry")
Background: Imagine it is time for your lunch break, you take your sandwich outside and you sit down to enjoy your lunch with a beautiful view of Montana s Rocky Mountains. As you look up, you see what
the map Redrawing Donald Hobern takes a look at the challenges of managing biodiversity data [ Feature ]
![the map Redrawing Donald Hobern takes a look at the challenges of managing biodiversity data [ Feature ]](/thumbs/82/86628837.jpg "the map Redrawing Donald Hobern takes a look at the challenges of managing biodiversity data [ Feature ]")
Redrawing the map Donald Hobern takes a look at the challenges of managing biodiversity data 46 Volume 12 > Number 9 > 2008 www.asiabiotech.com Cicadetta sp., Canberra, Australia, December 2007 Photograph
Collecting flies for genomic research: workflow at Smithsonian NMNH and Biorepository
1 Collecting flies for genomic research: workflow at Smithsonian NMNH and Biorepository Torsten Dikow 0000-0003-4816-2909 @TDikow #asiloidflies doi:10.6084/m9.figshare.1603023 Smithsonian National Museum
New method developments in pollen DNA barcoding for forensic applica8ons
New method developments in pollen DNA barcoding for forensic applica8ons Karen Leanne Bell, Emory University Homeland Security Symposium Series, University of Texas El Paso, June 2016 1 Overview Background
Lecture 2 Biology 5865 Conservation Biology
Lecture 2 Biology 5865 Conservation Biology What is Biological Diversity? Chapter 2 spend additional time on this chapter if you have not had ecology Generally know the meaning and use of terms in bold
SEQUENCING NUCLEAR MARKERS IN FRESHWATER GREEN ALGAE: CHARA SUBSECTION WILLDENOWIA
SEQUENCING NUCLEAR MARKERS IN FRESHWATER GREEN ALGAE: CHARA SUBSECTION WILLDENOWIA Stephen D. Gottschalk Department of Biological Sciences, Fordham University, 441 E Fordham Rd, Bronx, NY 10458, USA ABSTRACT
MiGA: The Microbial Genome Atlas
December 12 th 2017 MiGA: The Microbial Genome Atlas Jim Cole Center for Microbial Ecology Dept. of Plant, Soil & Microbial Sciences Michigan State University East Lansing, Michigan U.S.A. Where I m From
The Saguaro Genome. Toward the Ecological Genomics of a Sonoran Desert Icon. Dr. Dario Copetti June 30, 2015 STEMAZing workshop TCSS
The Saguaro Genome Toward the Ecological Genomics of a Sonoran Desert Icon Dr. Dario Copetti June 30, 2015 STEMAZing workshop TCSS Why study a genome? - the genome contains the genetic information of an
Microbiome: 16S rrna Sequencing 3/30/2018
Microbiome: 16S rrna Sequencing 3/30/2018 Skills from Previous Lectures Central Dogma of Biology Lecture 3: Genetics and Genomics Lecture 4: Microarrays Lecture 12: ChIP-Seq Phylogenetics Lecture 13: Phylogenetics
Unit 5.2. Ecogeographic Surveys - 1 -
Ecogeographic Surveys Unit 5.2 Ecogeographic Surveys - 1 - Objectives Ecogeographic Surveys - 2 - Outline Introduction Phase 1 - Project Design Phase 2 - Data Collection and Analysis Phase 3 - Product
Animal Sound Archives and Zoological Museums
Animal Sound Archives and Zoological Museums Do they share a common purpose? Can one take on the other s s tasks? Gustav Peters, ZFMK, Bonn, Germany Animal Sound Archives Purpose and Tasks - Collection/acquisition
Phylogenetic diversity and conservation
Phylogenetic diversity and conservation Dan Faith The Australian Museum Applied ecology and human dimensions in biological conservation Biota Program/ FAPESP Nov. 9-10, 2009 BioGENESIS Providing an evolutionary
OCR (A) Biology A-level
OCR (A) Biology A-level Topic 4.2: Biodiversity Notes Biodiversity is the variety of living organisms, over time the variety of life on Earth has become more extensive but now it is being threatened by
Northwestern Hawaiian Islands Coral Reef Research Partnership: Ocean Mapping, Ecosystem Threats, and Information Management
Northwestern Hawaiian Islands Coral Reef Research Partnership: Ocean Mapping, Ecosystem Threats, and Information Management Malia Chow Papahanaumokuakea Marine National Monument National Oceanic and Atmospheric
Introduction to Molecular Evolution (BIOL 3046) Course website:
Introduction to Molecular Evolution (BIOL 3046) Course website: www.biol3046.info What is evolution? Evolution: from Latin evolvere, to unfold broad sense, to change e.g., stellar evolution, cultural evolution,
A minimalist barcode can identify a specimen whose DNA is degraded
Molecular Ecology Notes (2006) 6, 959 964 doi: 10.1111/j.1471-8286.2006.01470.x Blackwell Publishing Ltd BARCODING A minimalist barcode can identify a specimen whose DNA is degraded MEHRDAD HAJIBABAEI,*