Caroline M. O Hara* Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia 30333

Size: px
Start display at page:

Download "Caroline M. O Hara* Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia 30333"

Transcription

1 JOURNAL OF CLINICAL MICROBIOLOGY, Mar. 2006, p Vol. 44, No /06/$ doi: /jcm Evaluation of the Phoenix 100 ID/AST System and NID Panel for Identification of Enterobacteriaceae, Vibrionaceae, and Commonly Isolated Nonenteric Gram-Negative Bacilli Caroline M. O Hara* Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia Received 20 April 2005/Returned for modification 25 May 2005/Accepted 3 January 2006 The Phoenix 100 ID/AST system (Becton Dickinson Co., Sparks, Md.) is an automated system for the and antimicrobial susceptibility testing of bacterial isolates. This system with its negative (NID) panel was evaluated for its accuracy in the of 507 isolates of the family Enterobacteriaceae, 57 other nonenteric gram-negative isolates that are commonly isolated in clinical microbiology laboratories, and 138 isolates of the family Vibrionaceae. All of the isolates had been characterized by using approximately 48 conventional tube biochemicals. Of the 507 isolates of the Enterobacteriaceae, 456 (89.9%) were correctly the genus and species levels. The five isolates of Proteus penneri required an off-line indole test, as suggested by the system to differentiate them from Proteus vulgaris. The s of 20 (3.9%) isolates were correct to the but incorrect at the species level. Two (0.4%) isolates were reported as no. Miss to the genus and species levels occurred for 29 (5.7%) isolates of the Enterobacteriaceae. These incorrect s were spread over 14 different genera. The most common error was the mis of Salmonella species. The shortest time for a correct was 2 h 8 min. The longest time was 12 h 27 min, for the of a Serratia marcescens isolate. Of the 57 isolates of nonenteric gram-negative bacilli (Acinetobacter, Aeromonas, Burkholderia, Plesiomonas, Pseudomonas, and Stenotrophomonas spp.), 48 (84.2%) were correctly the genus and species levels and 7 (12.3%) were correctly the but not to the species level. The average time for a correct was 5 h 11 min. Of the Vibrionaceae spp., 123 (89.1%) were correctly identified at the end of the initial incubation period, which averaged 4 h. Based on the findings of this study, the Phoenix 100 ID/AST system NID panel falls short of being an acceptable new method for the of the Enterobacteriaceae, Vibrionaceae, and gram-negative nonenteric isolates that are commonly encountered in many hospital microbiology laboratories. Downloaded from The introduction of the Phoenix 100 ID/AST system (Becton Dickinson Co. [BD], Sparks, Md.) within the United States brings to four the number of automated systems on the market worldwide. The use of automated systems in clinical microbiology laboratories is widespread, and technologists rely heavily on their accuracy. Since bacterial s are linked to the algorithms for antimicrobial susceptibility testing in several of the machines, the accuracy of the affects the interpretation of the accompanying antimicrobial susceptibility tests. I evaluated the accuracy of the Phoenix 100 ID/AST system and the negative (NID) panel when they were used to identify members of the families Enterobacteriaceae and Vibrionaceae, members of the genera Aeromonas and Plesiomonas, and commonly isolated gram-negative nonenteric organisms. MATERIALS AND METHODS Identification system and software version. The NID panels were processed in a Phoenix 100 ID/AST system. All panels were processed according to the manufacturer s directions. Each NID panel contained 45 substrates plus two fluorescent positive control wells. The substrates used one of the following principles: enzymatic hydrolysis * Corresponding author. Mailing address: Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Mailstop C16, Atlanta, GA Phone: (404) Fax: (404) cmo1@cdc.gov. of the amide or glycosidic bond, which results in the release of a fluorescent coumarin or 4-methylumbelliferone derivative (13 substrates); resistance to an antimicrobial agent or utilization of a carbon source, which results in a reduction of the resazurin-based indicator (2 and 7 substrates, respectively); enzymatic hydrolysis of a colorless substrate, which releases a yellow end product (4 substrates); utilization of carbohydrates, which results in lower phs and changes in the phenol red indicator (16 substrates); hydrolysis of ornithine or urea, which results in a change in the fluorescent indicator; or hydrolysis of esculin, which results in a black precipitate in the presence of the ferric ion. Each panel must be inoculated within 2 h after its foil pouch is opened, and the panels must be loaded into the instrument within 30 min of inoculation. Only cotton-tipped swabs or wooden applicators are acceptable for preparation of the suspensions. A suspension of each 24-h-old isolate was made in the Phoenix 100 ID/AST broth to match the turbidity of a 0.5 McFarland standard by using a CrystalSpec nephelometer (Becton Dickinson). The panel was inoculated, the inoculation port was sealed with a panel closure, and the panel was loaded into the instrument. The current database is version 3.34, which contains 60 genera, 155 species, and 5 CDC enteric groups. Culture collection. The 702 isolates of biochemically typical and atypical members of the families Enterobacteriaceae, Vibrionaceae, and Aeromonadaceae and commonly isolated gram-negative nonenteric organisms were taken from the stock culture collection of the Centers for Disease Control and Prevention (CDC) and had previously been characterized with 48 conventional biochemicals by standard methods (4, 6, 8). All isolates of Vibrio cholerae and Vibrio parahaemolyticus were serotyped for confirmation. Isolates were maintained in defibrinated sheep blood at 70 C. Upon removal from the freezer, the isolates were passed three times on tryptic soy agar with 5% sheep blood (TSA II; BD Biosciences Inc., Sparks, Md.) before inoculation into the NID panels. All incubations were at 35 1 C, unless otherwise noted. Eighteen isolates of biochemically typical and atypical Salmonella spp. were obtained from either clinical microbiology laboratories in the United States or on July 22, 2018 by guest 928

2 VOL. 44, 2006 TESTING WITH THE PHOENIX SYSTEM 929 TABLE 1. Enteric isolates tested with NID card tested with correct Avg time (h:min) to correct Unidentified Cedecea davisae 6 6 3:16 Cedecea lapagei 4 4 3:30 Citrobacter amalonaticus :40 Citrobacter braakii 6 4 5: Citrobacter farmeri 5 5 6:17 Citrobacter freundii 2 2 3:12 Citrobacter koseri :30 1 Citrobacter sedlakii 1 1 Citrobacter werkmanii 4 3 4:59 1 Citrobacter youngae 5 5 4:42 Edwardsiella tarda :30 1 Enterobacter aerogenes :28 Enterobacter asburiae :17 1 Enterobacter cancerogenus :33 Enterobacter cloacae : Enterobacter gergoviae :29 2 Enterobacter hormaechei 6 4 4:14 2 Enterobacter sakazakii :13 (12 atypical isolates) :59 1 Escherichia fergusonii :24 Escherichia hermannii :33 Escherichia vulneris :31 Ewingella americana :35 Hafnia alvei 9 9 2:20 Klebsiella oxytoca :31 Klebsiella pneumoniae subsp. ozaenae :37 1 Klebsiella pneumoniae subsp. pneumoniae :45 1 Klebsiella pneumoniae subsp. rhinoscleromatis :16 Kluyvera ascorbata 5 5 2:33 Kluyvera cryocrescens 5 5 2:53 Leclercia adecarboxylata :40 Moellerella wisconsensis 8 8 2:16 Morganella morganii :52 Pantoea agglomerans 9 8 6:59 1 Proteus mirabilis :15 Proteus penneri :30 Proteus vulgaris :30 1 Providencia alcalifaciens 7 7 2:42 Providencia rettgeri 8 7 2:59 1 Providencia rustigianii 2 2 3:58 Providencia stuartii :16 1 Rahnella aquatilis 2 2 2:49 Raoultella ornithinolytica :13 1 Salmonella enterica subsp. arizonae : Salmonella enterica serovar Choleraesuis 2 1 2:12 1 Salmonella enterica serovar Gallinarum 1 1 4:14 Salmonella species : Salmonella species, lactose positive 1 1 3:19 Salmonella enterica serovar Paratyphi A 2 2 6:19 Salmonella enterica serovar Pullorum 1 1 6:18 Salmonella enterica serovar Typhi 2 2 4:19 Serratia fonticola :34 2 Serratia liquefaciens group : Serratia marcescens :51 Serratia odorifera (both biogroups) :20 Serratia plymuthica :22 Serratia rubidaea : Shigella boydii :10 1 Shigella dysenteriae 1 1 6:11 Shigella flexneri 2 1 4:19 1 Shigella sonnei 4 2 4:15 2 Yersinia enterocolitica :23 2 Yersinia frederiksenii 3 2 6:15 1 Yersinia intermedia 2 1 3:18 1 Yersinia kristensenii Yersinia pseudotuberculosis 6 6 2:21 Yokenella regensburgei :00 2 Total (89.9%) 3:53 20 (3.9%) 2 (0.4%) 29 (5.7%)

3 930 O HARA J. CLIN. MICROBIOL. TABLE 2. Problems in Correct to Phoenix system Citrobacter braakii Citrobacter koseri Citrobacter sedlakii Citrobacter werkmanii Edwardsiella tarda Enterobacter asburiae Enterobacter cloacae (2 strains) Enterobacter cloacae (2 strains) Enterobacter gergoviae (2 strains) Enterobacter hormaechei (typical) Klebsiella pneumoniae subsp. ozaenae Klebsiella pneumoniae subsp. pneumoniae Pantoea agglomerans Proteus vulgaris Providencia rettgeri Providencia stuartii, urea positive Raoultella ornithinolytica Salmonella enterica subsp. arizonae Salmonella enterica subsp. arizonae (four isolates) Salmonella enterica serovar Choleraesuis Salmonella species Salmonella species (H 2 S negative, lysine negative) Serratia fonticola (two isolates) Serratia liquefaciens group (two isolates) Serratia liquefaciens group Serratia rubidaea Serratia rubidaea Shigella boydii Shigella flexneri Shigella sonnei (two strains) Yersinia enterocolitica (two isolates) Yersinia frederiksenii Yersinia intermedia Yersinia kristensenii (2 isolates) Yokenella regensburgei (2 isolates) a ID,. Citrobacter freundii Citrobacter farmeri Citrobacter braakii the Salmonella reference laboratory at the CDC. These isolates had never been frozen and had been passed a minimal number of times since they were isolated from their respective patient source and before they were tested in the Phoenix system. Additional tests. The only additional biochemical test required by the Phoenix system for was the spot indole test to differentiate between Proteus penneri and P. vulgaris. Definitions. Correct means that the Phoenix system agreed with the reference biochemical at the genus and the species levels at the end of the incubation period. In this study, the incubation period ranged from2h8minto12h20min. Correct to genus means that the Phoenix system identified the organism to the correct genus but not to the species level, when that genus and species were included in the database. No means that the instrument could not identify the organism within the maximum allowable time of 12 h. means that the instrument misidentified the organism at a confidence value of 90% when that organism was contained within the database. A confidence level of 90% is the lower limit of acceptability for the Phoenix system. Any with a confidence value of 90% at 12 h is categorized as no. If an initial was in error, an additional passage on blood agar was made and the test was repeated in duplicate to eliminate the possibility of technical error. The best two of three answers were used for categorization of that isolate. Edwardsiella ictalura Enterobacter cloacae Enterobacter asburiae; Enterobacter amnigenus biogroup 1 Klebsiella pneumoniae subsp. ozaenae Proteus penneri Providencia stuartii Salmonella spp. Serratia marcescens Serratia marcescens Yersinia frederiksenii Yersinia intermedia Yersinia frederiksenii Yersinia enterocolitica No ID a ; Escherchia coli; Citrobacter youngae Citrobacter farmeri; Kluyvera ascorbata Pantoea agglomerans; three different answers for second isolate Citrobacter youngae Citrobacter freundii Pasteurella pneumotropica Shigella flexneri Proteus mirabilis Klebsiella oxytoca Shigella sonnei Klebsiella pneumoniae subsp. ozaenae Burkholderia cepacia Pantoea agglomerans Salmonella typhi (one isolate); three different answers (one isolate) ; Escherichia hermannii RESULTS Table 1 shows the results of testing of 507 isolates of the Enterobacteriaceae. At the end of the incubation period, 456 (89.9%) of the isolates were correctly identified, 20 isolates (3.9%) were correctly the only, and 29 isolates (5.7%) were incorrectly identified. Table 2 expands on the errors in to the species level or totally incorrect s (error). These 29 errors were scattered over 14 genera and were not concentrated in any one particular genus, with the exception of the genus Salmonella. The s for 317 (62.5%) isolates that were correct were completed in 4 h or less. The database of the Phoenix NID groups together as Salmonella species isolates that are neither of the serovar Choleraesuis, Gallinarum, Paratyphi, Pullorum, nor of S. enterica Typhi, subsp. arizonae. Of the 16 stock Salmonella species cultures that have been frozen at 70 C for many years, 13 were correctly identified (81.3%) and 2 were misidentified

4 VOL. 44, 2006 TESTING WITH THE PHOENIX SYSTEM 931 TABLE 3. Nonenteric isolates tested with NID card tested with correct Avg time (h:min) to correct Unidentified Acinetobacter baumannii complex 7 5 9:51 2 Acinetobacter lwoffi : Aeromonas (mixed species) :51 4 Burkholderia cepacia 7 6 3:03 1 Plesiomonas shigelloides :50 Pseudomonas aeruginosa :48 Stenotrophomonas maltophilia 8 8 2:30 Total (84.2%) 5:11 7 (12.3%) 0 2 (3.5%) (12.5%). In an effort to learn if the Salmonella miss were the result of the isolates being frozen for many years, 18 fresh isolates were obtained from patients in community hospitals in 10 different states. These strains were passed only one time for a purity check before they were tested. Of the 18 fresh Salmonella isolates, 13 were correctly identified (72.2%) and 5 were misidentified (27.8%). What is particularly troublesome is that the seven misidentified isolates (stock or fresh) were called with a confidence level exceeding 90%. In an effort to learn why these errors occurred, I worked with the manufacturer to test certain isolates in conventional biochemicals, with those results being compared to the results from Phoenix system testing. Raw data were given to BD, which selected five of the isolates for testing in 1% Andrade s galacturonate. Of those five isolates, four (80%) gave the same result with the conventional substrate that was seen with the Phoenix panel; however, they were still misidentified as E. coli. Another disturbing set of results concerns the Shigella spp. The 10 isolates were not atypical in their biochemical results and should not have been difficult to identify, yet the instrument failed to identify 4 of them. Table 3 shows the results obtained from the testing of 57 isolates of seven nonenteric genera, of which 84.2% were correctly identified. The average time for a correct was5h11min, although the time was much shorter if the times for the Acinetobacter isolates are removed from the calculation. Table 4 shows the results of testing of 138 isolates of eight different species of Vibrio and Photobacterium damselae. Of those isolates, 89.1% were correctly identified, although only 44.9% of the correct s were obtained in 4 h or less. Less than 3.6% of these isolates not in the family Enterobacteriaceae were misidentified. Table 5 lists the errors for all the nonenteric isolates. While the 702 isolates tested presented a true challenge to the instrument, they do not reflect what is more likely seen in the daily workload of the clinical laboratory. On the basis of input from local area hospitals, an assortment of strains that approximate the relative numbers and types of strains likely to be routinely isolated in a clinical microbiology laboratory was randomly extracted from the challenge set. This weighted set of 118 strains gave the results shown in Table 6. Even with the weighted set of strains, it is recognized that some of the strains, if they were isolated in a clinical laboratory, would be subject to by using spot tests and would not be inoculated into a panel on an automated instrument. DISCUSSION Many clinical microbiology laboratories require that their systems perform at an accuracy of 90% or better, and many require a 95% accuracy. The Phoenix system accurately identifies isolates of the family Enterobacteriaceae only tested TABLE 4. Vibrio spp. isolates tested with NID card with correct Avg time (h:min) to correct Unidentified Vibrio alginolyticus : Vibrio cholerae :44 5 Vibrio fluvialis :21 Vibrio hollisae :07 Vibrio metschnikovii 9 8 2:09 1 Vibrio mimicus :51 Vibrio parahaemolyticus : Vibrio vulnificus :16 Photobacterium damselae 9 8 2:28 1 Total (89.1%) 4:01 7 (5.1%) 3 (2.2%) 5 (3.6%)

5 932 O HARA J. CLIN. MICROBIOL. TABLE 5. Problems with s of nonenteric bacteria Correct to Phoenix Acinetobacter baumannii (two isolates) Acinetobacter lwoffi Acinetobacter lwoffi Aeromonas sobria Aeromonas caviae Aeromonas hydrophila (two isolates) Burkholderia cepacia Vibrio alginolyticus (two isolates) Vibrio alginolyticus Vibrio cholerae (five isolates) Vibrio metschnikovii Vibrio parahaemolyticus Photobacterium damselae Acinetobacter species Three different species Aeromonas caviae Three different species Aeromonas caviae; Aeromonas veronii Vibrio fluvialis; Vibrio parahaemolyticus (one isolate each) Vibrio mimicus (five isolates) 89% of the time. Even with a weighted set of organisms, the accuracy is 89%. In the only other published study of the Phoenix system that used conventional biochemicals for a reference method, Colodner et al. reported 90.2% accuracy when identifying 51 isolates of Vibrio vulnificus biotype 3 as Vibrio vulnificus (2). Because the present study did not include any biogroup 3 isolates, it is not known how the present results compare to those of Colodner and coworkers (2). Several evaluations that used other commercial products as the reference method have been performed. Endimiani et al. tested 136 nonfermenting gram-negative bacilli and reported 95.6% agreement between the Phoenix 100 ID/AST system and the ATB/ID32GN system (biomérieux, Marcy l Etoile, France) (5). All isolates of Pseudomonas aeruginosa and Stenotrophomonas maltophilia, perhaps the most commonly isolated nonfermenters in a hospital laboratory, TABLE 6. Results of testing of a weighted set of strains Total identified Enterobacter cloacae Klebsiella pneumoniae Pseudomonas aeruginosa Acinetobacter baumannii Enterobacter aerogenes 6 6 Klebsiella oxytoca 6 6 Proteus vulgaris Proteus mirabilis 5 5 Salmonella spp Serratia marcescens 5 5 Citrobacter freundii 4 4 Citrobacter koseri Morganella morganii 3 3 Stenotrophomonas maltophilia 3 3 Providencia stuartii 2 2 Shigella spp Total (89.8%) 7 (5.9%) 5 (4.2%) Pseudomonas [sic] oryzihabitans Burkholderia/Ralstonia (no additional tests given) Aeromonas caviae Yersinia ruckerii Aeromonas salmonicida; one isolate gave three different s Vibrio hollisae were correctly identified. Stefaniuk et al. reported an accuracy rate of 92.5% compared to the results of testing with the API 20E system when they tested 120 isolates that represented only eight of the most commonly encountered species of Enterobacteriaceae (11). The same study showed an agreement of 96.3% compared to the results obtained with the API 20NE system for the of 54 isolates of P. aeruginosa, Acinetobacter baumannii, and S. maltophilia. When Donay et al. used the same two reference systems for comparison of the results to those obtained with the Phoenix system, the s of 130 isolates of the Enterobacteriaceae and 57 isolates of nonenteric organisms showed accuracy rates of 94.6% and 89.4%, respectively (3). Brisse et al. tested 134 isolates of the Burkholderia cepacia complex from cystic fibrosis patients; they had been identified by five different molecular biology-based methods, and an accuracy rate of only 50% was reported (1). The rate of 85.7% in the present study is higher probably because none of the B. cepacia isolates in this study were from cystic fibrosis patients. These isolates are known to be more difficult to identify. Schreckenberger et al. compared the Phoenix NID to both the Vitek Legacy and the Vitek 2 colorimetric systems (P. C. Schreckenberger, K. L. Ristow, and A. M. Krilcich, Abstr. 105th Gen. Meet. Am. Soc. Microbiol., abstr. C-193, 2005). Testing 288 isolates of Enterobacteriaceae and 129 isolates of nonfermenters, they reported NID accuracy rates of 93.8% and 83.7%, respectively. In a related study by Funke and Funke-Kissling, in which 309 isolates were inoculated directly from positive blood culture bottles into the Phoenix NID panels, 92.9% of the isolates were correctly the genus and species (7). At this time, that is the only study that has addressed the concept of without prior isolation of the organism in pure culture. The Phoenix 100 ID/AST NID panels were easy to use. Once the suspension was made, the panel was inoculated, and the panel closure was snapped into place, the panel was completely sealed, thereby preventing possible contamination to the technologist. If, however, the panel was jostled unnecessarily or dropped, the liquid in the esculin well was disturbed

6 VOL. 44, 2006 TESTING WITH THE PHOENIX SYSTEM 933 enough that the baseline reading was not valid and the test with the panel was aborted. This study encountered three instances of panel closures that were mismolded during production. Because there were no obvious flaws in the closures, they were used, only to be ripped from the panel during the first rotation of the carousel. This action did not damage or jam the machine, but the test with the panel had to be aborted and set up again. BD is currently preparing to release an alternate inoculum procedure that uses an inoculum density equal to a 0.25 McFarland standard. This workflow has been validated for use with the current NID panels and allows the instrument to read panels inoculated either way simultaneously. The Phoenix instrument requires a bench that is able to support 500 pounds and that has at least 6 linear feet of space. The machine accommodates 99 panels, with one slot allocated for the permanently installed thermometer. No internal cleaning or maintenance of the machine is required. The Phoenix system validates itself on every cycle. All of the consumables that are required can be stored at room temperature. Panels are available in either -only formats or as combination panels with and antimicrobial susceptibility testing capabilities. The panels are read every 20 min; and calculations are made after the readings are taken at 2, 3, 4, 6, and 12 h. Panel testing ceases after 12 h 20 min. The Institute of Medicine report To Err is Human: Building a Safer Health System proposed a comprehensive approach to reducing medical errors and improving patient safety (9). While laboratory errors were not addressed directly, one of the recommendations was that heath care organizations implement proven medication safety practices. Because of issues related to increased resistance to antimicrobial agents in certain genera, it is imperative that the of causative agents of infection be as accurate as possible, preferably in the shortest time possible, thus allowing appropriate antimicrobial therapy to be initiated. In the 8th edition of the Manual of Clinical Microbiology (10), it is recommended that the accuracy of a system exceed 90% in its overall ability to identify common and uncommon bacteria normally seen in the hospital laboratory and that the system be able to identify commonly isolated organisms with at least 95% accuracy compared with the accuracies of conventional methods. With an overall accuracy of 88.9% for the of a challenge set of enteric and nonfermenter organisms and an accuracy of 89.8% for the of the weighted set of isolates, the Phoenix NID panel falls short of providing accurate s to satisfy these criteria. REFERENCES 1. Brisse, S., S. Stefani, J. Verhoef, A. Van Belkum, P. Vandamme, and W. Goessens Comparative evaluation of the BD Phoenix and Vitek 2 automated instruments for of isolates of the Burkholderia cepacia complex. J. Clin. Microbiol. 40: Colodner, R., R. Raz, I. Meir, T. Lazarovich, L. Lerner, J. Kopelowitz, Y. Keness, W. Sakran, S. Ken-Dror, and N. Bisharat Identification of the emerging pathogen Vibrio vulnificus biotype 3 by commercially available phenotypic methods. J. Clin. Microbiol. 42: Donay, J.-L., D. Mathieu, P. Fernandes, C. Prégermain, P. Bruel, A. Wargnier, I. Casin, F. X. Weill, P. H. Lagrange, and J. L. Hermann Evaluation of the automated Phoenix system for potential routine use in the clinical microbiology laboratory. J. Clin. Microbiol. 42: Edwards, P. R., and W. H. Ewing Identification of Enterobacteriaceae, 3rd ed. Burgess Publishing Co., Minneapolis, Minn. 5. Endimiani, A., F. Luzzaro, A. Tamborini, G. Lombardi, V. Elia, R. Belloni, and A. Toniolo Identification and antimicrobial susceptibility testing of clinical isolates of nonfermenting gram-negative bacteria by the Phoenix automated microbiology system. Microbiologica 25: Farmer, J. J., III, M. A. Asbury, F. W. Hickman, D. J. Brenner, and the Enterobacteriaceae Study Group Enterobacter sakazakii: a new species of Enterobacteriaceae isolated from clinical specimens. Int. J. Syst. Bacteriol. 30: Funke, G., and P. Funke-Kissling Use of the BD Phoenix automated microbiology system for direct and susceptibility testing of gram-negative rods from positive blood cultures in a three-phase trial. J. Clin. Microbiol. 42: Hickman, F. W., and J. J. Farmer III Salmonella typhi:, antibiograms, serology, and bacteriophage typing. Am. J. Med. Technol. 44: Kohn, L. T., J. M. Corrigan, and M. S. Donaldson To err is human: building a safer health system. National Academy Press, Washington, D.C. 10. O Hara, C. M., M. P. Weinstein, and J. M. Miller Manual and automated systems for detection and of microorganisms, p In P. R. Murray, E. J. Baron, M. A. Pfaller, J. H. Jorgensen, and R. H. Yolken (ed.), Manual of clinical microbiology, 8th ed. American Society for Microbiology, Washington, D.C. 11. Stefaniuk, E., A. Baraniak, M. Gniadkowski, and W. Hryniewicz Evaluation of the BD Phoenix automated and susceptibility testing system in clinical microbiology laboratory practice. Eur. J. Clin. Microbiol. Infect. Dis. 22:

Evaluation of the Modified Micro-ID System for Identification

Evaluation of the Modified Micro-ID System for Identification JOURNAL OF CLINICAL MICROBIOLOGY, Oct. 1979, p. 454-458 0095-1 137/79/10-0454/05$02.00/0 Vol. 10, No. 4 Evaluation of the Modified Micro-ID System for Identification of Enterobacteriaceae WILLIAM J. BUESCHING,'

More information

Library Stats Sheet: Gram-negative

Library Stats Sheet: Gram-negative Library Stats Sheet: Gram-negative Not for Use in Diagnostic Procedures. DiversiLab Kit: Bacterial (cat.# 270633) DiversiLab Library Name: DL Gram-negative Library Application: Strain-typing for all Gram-negative

More information

Evaluation of Mast-ID 15 system for identifying

Evaluation of Mast-ID 15 system for identifying J Clin Pathol 7;4:6-73 Evaluation of Mast-ID 5 system for identifying Enterobacteriaceae, some Vibrionaceae, and Acinetobacter B HOLMES, C A DAWSON From the National Collection of Type Cultures, Central

More information

Bile Chrysoidin Glycerol Agar with MUG

Bile Chrysoidin Glycerol Agar with MUG INSTRUCTIONS FOR USE READY-TO-USE PLATED MEDIA PA-257430.04 Rev.: Mar 2013 Bile Chrysoidin Glycerol Agar with MUG INTENDED USE Partially selective medium for the isolation and differentiation of Enterobacteriaceae

More information

Multicenter Evaluation of the MicroScan Rapid Gram-Negative Identification Type 3 Panel

Multicenter Evaluation of the MicroScan Rapid Gram-Negative Identification Type 3 Panel JOURNAL OF CLINICAL MICROBIOLOGY, Oct. 1997, p. 2531 2536 Vol. 35, No. 10 0095-1137/97/$04.00 0 Copyright 1997, American Society for Microbiology Multicenter Evaluation of the MicroScan Rapid Gram-Negative

More information

Evaluation of the VITEK 2 System for Rapid Identification of Medically Relevant Gram-Negative Rods

Evaluation of the VITEK 2 System for Rapid Identification of Medically Relevant Gram-Negative Rods JOURNAL OF CLINICAL MICROBIOLOGY, July 1998, p. 1948 1952 Vol. 36, No. 7 0095-1137/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Evaluation of the VITEK 2 System for

More information

Comparison of Crystal Enteric/Nonfermenter System, API 20E System, and Vitek Automicrobic System for Identification of Gram-Negative Bacilli

Comparison of Crystal Enteric/Nonfermenter System, API 20E System, and Vitek Automicrobic System for Identification of Gram-Negative Bacilli JOURNAL OF CLINICAL MICROBIOLOGY, Feb. 1995, p. 364 370 Vol. 33, No. 2 0095-1137/95/$04.00 0 Copyright 1995, American Society for Microbiology Comparison of Crystal Enteric/Nonfermenter System, API 20E

More information

Clinical Laboratory Evaluation of the AutoMicrobic System

Clinical Laboratory Evaluation of the AutoMicrobic System JOURNAL OF CLINICAL MICROBIOLOGY, OCt. 1981, p. 370-375 0095-1 137/81/100370-06$02.00/0 Vol. 14, No. 4 Clinical Laboratory Evaluation of the AutoMicrobic System Enterobacteriaceae Biochemical Card JAMES

More information

Development of Compact Dry SL for Salmonella detection

Development of Compact Dry SL for Salmonella detection Development of Compact Dry SL for Salmonella detection S.Mizuochi 1),H.Teramura 1),S.Nirazuka 1),H.Kodaka 1),K.Inoue ) K.Tamura 3) 1)Research Dept., Nissui Pharmaceutical, ) Saitama Pref. Ranzango Hp.,

More information

Numerical Diagnostic Key for the Identification of Enterobacteriaceae

Numerical Diagnostic Key for the Identification of Enterobacteriaceae APPLIED MICROBIOLOGY, Jan. 1972, p. 108-112 Copyright 0 1972 American Society for Microbiology Vol. 23, No. 1 Printed in U.SA. Numerical Diagnostic Key for the Identification of Enterobacteriaceae HERMAN

More information

System in Comparison with the API 20E System

System in Comparison with the API 20E System JOURNAL OF CLINICAL MICROBIOLOGY, July 983, p. 2835 Vol. 8, No. 009537/83/0702808$02.00/0 Copyright C 983, American Society for Microbiology Evaluation of the Updated MS2 Bacterial Identification System

More information

Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system

Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system DOI 10.1007/s10096-013-1912-y ARTICLE Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system S. S. Richter & L. Sercia

More information

3M Food Safety Technical Bulletin

3M Food Safety Technical Bulletin 3M Petrifilm Aqua Enterobacteriaceae Count Plates Performance Summary 3M Petrifi lm Aqua Enterobacteriaceae (AQEB) Count Plates are sample ready media plates used in the microbial testing of bottled water.

More information

Performances of VITEK 2 Colorimetric Cards for Identification of Gram-Positive and Gram-Negative Bacteria

Performances of VITEK 2 Colorimetric Cards for Identification of Gram-Positive and Gram-Negative Bacteria JOURNAL OF CLINICAL MICROBIOLOGY, Sept. 2005, p. 4402 4406 Vol. 43, No. 9 0095-1137/05/$08.00 0 doi:10.1128/jcm.43.9.4402 4406.2005 Copyright 2005, American Society for Microbiology. All Rights Reserved.

More information

Most common dose (mg) 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1. Maximum dose schedule (mg) 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1

Most common dose (mg) 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1. Maximum dose schedule (mg) 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1 1g x 1 Ertapenem Rationale for the EUCAST clinical breakpoints, version 1.3 1 st June 2009 Introduction Ertapenem is a carbapenem, available only for parenteral use. Ertapenem is relevant for therapy of septicaemia,

More information

KIYOFUMI OHKUSU* Department of Clinical Laboratory, Chiba Children s Hospital, Chiba, , Japan

KIYOFUMI OHKUSU* Department of Clinical Laboratory, Chiba Children s Hospital, Chiba, , Japan JOURNAL OF CLINICAL MICROBIOLOGY, Dec. 2000, p.4586 4592 Vol. 38, No. 12 0095-1137/00/$04.00 0 Copyright 2000, American Society for Microbiology. All Rights Reserved. Cost-Effective and Rapid Presumptive

More information

3M Food Safety Technical Bulletin

3M Food Safety Technical Bulletin 3M Petrifilm Aqua Heterotrophic Count Plate Performance Summary 3M Petrifilm Aqua Heterotrophic Count (AQHC) Plates are sample ready media plates used in the microbial testing of bottled water. Each plate

More information

CHN62: REPORTING OF MICROBIOLOGY RESULTS

CHN62: REPORTING OF MICROBIOLOGY RESULTS CHN62: 1.1 Introduction This SOP provides guidance on reporting of all the microbiological results in the Microbiology laboratory for CHAIN study. 1.2 Purpose This SOP will aid in a standard reporting

More information

SSI ENTERIC PRODUCT INFORMATION. Detects all Enterobacteria. Direct identification. Rapid diagnosis. Cost saving

SSI ENTERIC PRODUCT INFORMATION. Detects all Enterobacteria. Direct identification. Rapid diagnosis. Cost saving SSI ENTERIC M E D I U M Detects all Enterobacteria Direct identification Rapid diagnosis Cost saving SSI Diagnostica 2 Herredsvejen 3400 Hillerød Denmark PRODUCT INFORMATION Tel: +45 4829 9100 Fax: +45

More information

ENTEROBACTER AEROGENES UNKNOWN BACTERIA FLOW CHART UNKNOWN LAB REPORT, MICROBIOLOGY ENTEROBACTER AEROGENES

ENTEROBACTER AEROGENES UNKNOWN BACTERIA FLOW CHART UNKNOWN LAB REPORT, MICROBIOLOGY ENTEROBACTER AEROGENES ENTEROBACTER AEROGENES UNKNOWN BACTERIA PDF UNKNOWN LAB REPORT, MICROBIOLOGY ENTEROBACTER AEROGENES IDENTIFICATION OF AN UNKNOWN BACTERIAL SPECIES OF 1 / 5 2 / 5 3 / 5 enterobacter aerogenes unknown bacteria

More information

identification system

identification system J Clin Pathol 1988;41:910-914 Evaluation of the Microbact-24E bacterial identification system JULIA M LING, Y-W HUT, G L FRENCH Department ofmicrobiology, The Chinese University of Hong Kong, The Prince

More information

Microbial pollutants in stagnant water in an informal settlement in the Western Cape, South Africa

Microbial pollutants in stagnant water in an informal settlement in the Western Cape, South Africa Microbial pollutants in stagnant water in an informal settlement in the Western Cape, South Africa Qenehelo A. Leuta, James P. Odendaal and Arnelia N. Paulse Department of Environmental and Occupational

More information

Phylogenetic Diversity of Coliform Isolates in USA. Phylogenetic Classification

Phylogenetic Diversity of Coliform Isolates in USA. Phylogenetic Classification Phylogenetic Diversity of Coliform Isolates in USA Ya Zhang and Wen Tso Liu University of Illinois at Urbana Champaign Mark LeChevallier American Water Inc. Nov 2011 Phylogenetic Classification group organisms

More information

of the Family Enterobacteriaceae

of the Family Enterobacteriaceae INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, Apr. 1995, p. 5261 00207713/ 95/$04.00 0 Copyright 0 1995, International Union of Microbiological Societies Vol. 45, No. 2 Heterogeneous Patterns of Acid

More information

Gentamicin Rationale for the EUCAST clinical breakpoints, version th February, 2009

Gentamicin Rationale for the EUCAST clinical breakpoints, version th February, 2009 Gentamicin Rationale for the EUCAST clinical breakpoints, version 1.2 16 th February, 2009 Introduction The aminoglycosides are a group of naturally occurring or semi-synthetic compounds with bactericidal

More information

Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase b-subunit

Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase b-subunit International Journal of Systematic and Evolutionary Microbiology (2005), 55, 2013 2025 DOI 10.1099/ijs.0.63539-0 Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase

More information

EUCAST Expert Rules Version 3.1. Intrinsic Resistance and Exceptional Phenotypes Tables

EUCAST Expert Rules Version 3.1. Intrinsic Resistance and Exceptional Phenotypes Tables EUCAST Expert s Version 3.1 Intrinsic Resistance and Exceptional Phenotypes Tables EUCAST Expert s version 2.0 was published on 29 October 2011(http://www.eucast.org/expert_rules). The expert rules have

More information

Microbial Typing by Machine Learned DNA Melt Signatures

Microbial Typing by Machine Learned DNA Melt Signatures Microbial Typing by Machine Learned DNA Melt Signatures Nadya Andini 1, Bo Wang 2, Pornpat Athamanolap 3, Justin Hardick 4, Billie J. Masek 5, Simone Thair 1, Annie Hu 1, Gideon Avornu 5, Stephen Peterson

More information

Susan Maddocks,* Tom Olma, and Sharon Chen

Susan Maddocks,* Tom Olma, and Sharon Chen JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2002, p. 2999 3003 Vol. 40, No. 8 0095-1137/02/$04.00 0 DOI: 10.1128/JCM.40.8.2999 3003.2002 Copyright 2002, American Society for Microbiology. All Rights Reserved.

More information

Most common dose (mg) 1 g x 3 1 g x mg -1.0 g x 3 1 g x mg -1 g x mg -1 g x 3

Most common dose (mg) 1 g x 3 1 g x mg -1.0 g x 3 1 g x mg -1 g x mg -1 g x 3 Meropenem Rationale for the EUCAST clinical breakpoints, version 1.5 1 st June 2009 Introduction Meropenem is a carbapenem, available only for parenteral use. Meropenem is relevant for therapy of septicaemia,

More information

Classification of Enterobacteria Based on Overall

Classification of Enterobacteria Based on Overall JOURNAL OF BAcTERIOLOGY, Nov., 1966 Copyright 1966 American Society for Microbiology Vol. 92, No. 5 Printed In U.S.A. Classification of Enterobacteria Based on Overall Similarity1 R. E. KRIEG AND W. R.

More information

Product Catalogue 2015 Clinical and Industrial Microbiology

Product Catalogue 2015 Clinical and Industrial Microbiology Acinetobacter baumannii ATCC BAA-747 * 89141 Actinomyces odontolyticus ATCC 17929 * 89114 Aeromonas hydrophila ATCC 7966 * 89119 Aggregatibacter aphrophilus ATCC 7901 * 89091 Aspergillus brasiliensis ATCC

More information

Indicator Organisms SCI5508

Indicator Organisms SCI5508 Indicator Organisms SCI5508 Indicator Organisms REFLECTS microbiological quality organisms and/or their metabolic products whose presence in given foods at certain levels may be used to assess existing

More information

Product Catalogue 2016 Clinical and Industrial Microbiology

Product Catalogue 2016 Clinical and Industrial Microbiology Acinetobacter baumannii ATCC BAA-747 * 89141 Acinetobacter baumannii ATCC 19606 * 89174 Actinomyces odontolyticus ATCC 17929 * 89114 Aeromonas hydrophila ATCC 7966 * 89119 Aeromonas hydrophila ATCC 35654

More information

Tetracycline Rationale for the EUCAST clinical breakpoints, version th November 2009

Tetracycline Rationale for the EUCAST clinical breakpoints, version th November 2009 Tetracycline Rationale for the EUCAST clinical breakpoints, version 1.0 20 th November 2009 Introduction The natural tetracyclines, including tetracycline, chlortetracycline, oxytetracycline and demethylchlortetracycline

More information

Rapid Presumptive Identification of Gram-Negative Rods Directly from Blood Cultures by Simple Enzymatic Tests

Rapid Presumptive Identification of Gram-Negative Rods Directly from Blood Cultures by Simple Enzymatic Tests JOURNAL OF CLINICAL MICROBIOLOGY, Feb. 1990, p. 177-181 0095-1137/90/020177-05$02.00/0 Copyright 1990, American Society for Microbiology Vol. 28, No. 2 Rapid Presumptive Identification of Gram-Negative

More information

Design of an Enterobacteriaceae Pan-genome Microarray Chip

Design of an Enterobacteriaceae Pan-genome Microarray Chip Design of an Enterobacteriaceae Pan-genome Microarray Chip Oksana Lukjancenko and David W. Ussery DTU CBS 2010 2 Background Pan-genome complete collection of variuos genes located within populations at

More information

BD BBL CHROMagar Salmonella* / XLD Agar (Biplate)

BD BBL CHROMagar Salmonella* / XLD Agar (Biplate) PA-257372.02 Page 1 of 7 INSTRUCTIONS FOR USE READY-TO-USE PLATED MEDIA PA-257372.02 Rev.: Mar 2013 BD BBL CHROMagar Salmonella* / XLD Agar (Biplate) * U.S. Patent # 5,098,832, 5,194,374 INTENDED USE BBL

More information

System with a Conventional Broth System

System with a Conventional Broth System JOURNAL OF CLINICAL MICROBIOLOGY, Sept. 98, p. 55-5 95-7/8/955-6$./ Copyright C 98, American Society for Microbiology Vol. 6, No. Clinical Laboratory Comparison of a Slide Blood Culture System with a Conventional

More information

Gram negative bacilli

Gram negative bacilli Gram negative bacilli 1-Enterobacteriaceae Gram negative bacilli-rods Enterobacteriaceae Are everywhere Part of normal flora of humans and most animals They are cause of -30-35% septisemia -more than 70%

More information

Multicenter Comparison of In Vitro Activities of FK-037, Cefepime, Ceftriaxone, Ceftazidime, and Cefuroxime

Multicenter Comparison of In Vitro Activities of FK-037, Cefepime, Ceftriaxone, Ceftazidime, and Cefuroxime ANTIMICROBiAL AGENTS AND CHEMOTHERAPY, Aug. 3, p. 6-66-/93/6-5$./ Copyright 3, American Society for Microbiology Vol. 3, No. Multicenter Comparison of In Vitro Activities of,,,, and J. A. WASHINGTON,"*

More information

Title: Gut microbiota predict pulmonary infiltrates after allogeneic hematopoietic cell

Title: Gut microbiota predict pulmonary infiltrates after allogeneic hematopoietic cell Online Data Supplement Title: Gut microbiota predict pulmonary infiltrates after allogeneic hematopoietic cell transplantation Author list: Bianca Harris,Sejal M. Morjaria, Eric R. Littmann, Alexander

More information

Luo, Y; Siu, GKH; Yeung, ASF; Chen, JHK; Ho, PL; Leung, KW; Tsang, LY; Cheng, VCC; Guo, L; Yang, J; Ye, L; Yam, WC

Luo, Y; Siu, GKH; Yeung, ASF; Chen, JHK; Ho, PL; Leung, KW; Tsang, LY; Cheng, VCC; Guo, L; Yang, J; Ye, L; Yam, WC Title Author(s) Performance of the VITEK MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for rapid bacterial identification in two diagnostic centres in China Luo,

More information

BIOL 3702L: MICROBIOLOGY LABORATORY SCHEDULE, SUMMER 2015

BIOL 3702L: MICROBIOLOGY LABORATORY SCHEDULE, SUMMER 2015 BIOL 3702L: MICROBIOLOGY LABORATORY SCHEDULE, SUMMER 2015 Week of May 18 th Introduction to the Microbiology Laboratory: Become familiar with the laboratory and its safety features Review safety rules

More information

Toronto General Hospital ANTIBIOGRAM Emergency Department January 1, December 31, 2016

Toronto General Hospital ANTIBIOGRAM Emergency Department January 1, December 31, 2016 IV (meningitis) IV (non-meningitis) (meningitis) (non-meningitis) Blood Isolates % Susceptible 644 18 36 70 78 74 59 69 75 262 100 19 64 75 100 92 54 72 78 76 68 89 86 99 Escherichia coli 153 58 30 67

More information

Evaluation of a new chromogenic selective medium for isolation and enumeration of Vibrio parahaemolyticus

Evaluation of a new chromogenic selective medium for isolation and enumeration of Vibrio parahaemolyticus African Journal of Microbiology Research Vol. 5(21), pp. 3432-3436, 9 October, 2011 Available online http://www.academicjournals.org/ajmr ISSN 1996-0808 2011 Academic Journals Full Length Research Paper

More information

Evaluation of a novel selective medium for isolation of Staphylococcus lugdunensis from wound specimens

Evaluation of a novel selective medium for isolation of Staphylococcus lugdunensis from wound specimens JCM Accepts, published online ahead of print on 23 April 2014 J. Clin. Microbiol. doi:10.1128/jcm.00706-14 Copyright 2014, American Society for Microbiology. All Rights Reserved. 1 2 3 4 5 6 JCM00706-14

More information

SULFIDE-INDOLE-MOTILITY (SIM) TEST

SULFIDE-INDOLE-MOTILITY (SIM) TEST Microbiology Laboratory (BIOL 3702L) Page 1 of 5 Principle and Purpose SULFIDE-INDOLE-MOTILITY (SIM) TEST Using Sulfide-Indole-Motility (SIM) media, various Gram-negative enteric bacilli can be distinguished

More information

ID Membranes for Microbial Rapid Identification

ID Membranes for Microbial Rapid Identification ID Membranes for Microbial Rapid Identification Chromogenic Reaction by Specific Substrates on Membranes Classical plates are still used today as first steps in modern microbiology. Smart, inexpensive

More information

Comparison of cefotiam and cefazolin activity against Gram-negative bacilli

Comparison of cefotiam and cefazolin activity against Gram-negative bacilli Journal of Antimicrobial Chemotherapy (1979) 5, 681-685 Comparison of cefotiam and cefazolin activity against Gram-negative bacilli Michio Ogawa, Masayoshi Hama, Goro Kosaki Second Department of Surgery,

More information

MICROBIOLOGY. Smart identification and antibiotic susceptibility determination system MIKROLATEST MIC MIKROLATEST BP MIKROLATEST ID MIKROLA

MICROBIOLOGY. Smart identification and antibiotic susceptibility determination system MIKROLATEST MIC MIKROLATEST BP MIKROLATEST ID MIKROLA MICROBIOLOGY Smart identification and antibiotic susceptibility determination system MIKROLATEST MIC MIKROLATEST BP MIKROLA MICROBIOLOGY Erba Lachema s. r. o., a traditional producer and supplier of diagnostic

More information

Why the CDS? The unique advantages of using an Australian antimicrobial susceptibility testing method

Why the CDS? The unique advantages of using an Australian antimicrobial susceptibility testing method Why the CDS? The unique advantages of using an Australian antimicrobial susceptibility testing method Peter Newton Medical Microbiologist Wollongong Hospital, Wollongong, NSW Where do I come from? SEALS

More information

NUT-TTC/EMB Code 5541

NUT-TTC/EMB Code 5541 NUT-TTC/EMB Code 5541 COMING SOON! BioPaddles Colony Identification App Nutrient-TTC Agar (NUT-TTC) Eosin Methylene Blue Agar (EMB) USE: Isolation and differentiation of Gram (-) enteric bacilli. Coliform

More information

Nitroxoline Rationale for the NAK clinical breakpoints, version th October 2013

Nitroxoline Rationale for the NAK clinical breakpoints, version th October 2013 Nitroxoline Rationale for the NAK clinical breakpoints, version 1.0 4 th October 2013 Foreword NAK The German Antimicrobial Susceptibility Testing Committee (NAK - Nationales Antibiotika-Sensitivitätstest

More information

AOAC SMPR Standard Method Performance Requirements for Detection of Salmonella species in Romaine Lettuce and Baby Spinach

AOAC SMPR Standard Method Performance Requirements for Detection of Salmonella species in Romaine Lettuce and Baby Spinach AOAC SMPR 2014.017 Standard Method Performance Requirements for Detection of Salmonella species in Romaine Lettuce and Baby Spinach Intended Use: Routine Surveillance and Monitoring by a Trained Technician

More information

Overview of the major bacterial pathogens The major bacterial pathogens are presented in this table:

Overview of the major bacterial pathogens The major bacterial pathogens are presented in this table: Practical Microbiology 30/11/2018 University of Sulaimani college of Pharmacy Year2 Lab. 5: Overview of the major bacterial pathogens The major bacterial pathogens are presented in this table: Major Bacterial

More information

Epidemiology and genetics of CTX-M extended-spectrum β-lactamases in Gram-negative bacteria

Epidemiology and genetics of CTX-M extended-spectrum β-lactamases in Gram-negative bacteria Critical Reviews in Microbiology, 2013; 39(1): 79 101 ISSN 1040-841X print/issn 1549-7828 online DOI: 10.3109/1040841X.2012.691460 REVIEW ARTICLE Epidemiology and genetics of CTX-M extended-spectrum β-lactamases

More information

Our product offering. The ATCC Licensed Derivative Program

Our product offering. The ATCC Licensed Derivative Program Our product offering Currently MECCONTI offers three different product lines of lyophilized micro-organisms: MicroSwabs: A MicroSwab consists of a lyophilized pellet of a single micro-organism strain inside

More information

THE IDENTIFICATION OF TWO UNKNOWN BACTERIA AFUA WILLIAMS BIO 3302 TEST TUBE 3 PROF. N. HAQUE 5/14/18

THE IDENTIFICATION OF TWO UNKNOWN BACTERIA AFUA WILLIAMS BIO 3302 TEST TUBE 3 PROF. N. HAQUE 5/14/18 THE IDENTIFICATION OF TWO UNKNOWN BACTERIA AFUA WILLIAMS BIO 3302 TEST TUBE 3 PROF. N. HAQUE Introduction: The identification of bacteria is important in order for us to differentiate one microorganism

More information

Microbial DNA qpcr Array Sepsis

Microbial DNA qpcr Array Sepsis Microbial DNA qpcr Array Sepsis Cat. no. 330261 BAID-1903ZRA For real-time PCR-based, application-specific microbial identification or profiling The Sepsis Microbial DNA qpcr Array is a research tool used

More information

INTRODUCTION MATERIALS & METHODS

INTRODUCTION MATERIALS & METHODS Evaluation of Three Bacterial Transport Systems, The New Copan M40 Transystem, Remel Bactiswab And Medical Wire & Equipment Transwab, for Maintenance of Aerobic Fastidious and Non-Fastidious Organisms

More information

CERTIFICATION. Certificate No. The AOAC Research Institute hereby certifies that the performance of the test kits known as:

CERTIFICATION. Certificate No. The AOAC Research Institute hereby certifies that the performance of the test kits known as: CERTIFICATION AOAC Performance Tested SM Certificate No. 120301 The AOAC Research Institute hereby certifies that the performance of the test kits known as: foodproof Salmonella Detection Kits (liquid

More information

Comparison of rapid cultural methods for the detection of Salmonella species

Comparison of rapid cultural methods for the detection of Salmonella species Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 Comparison of rapid cultural methods for the detection of Salmonella species

More information

ANTIMICROBIAL TESTING. E-Coli K-12 - E-Coli 0157:H7. Salmonella Enterica Servoar Typhimurium LT2 Enterococcus Faecalis

ANTIMICROBIAL TESTING. E-Coli K-12 - E-Coli 0157:H7. Salmonella Enterica Servoar Typhimurium LT2 Enterococcus Faecalis ANTIMICROBIAL TESTING E-Coli K-12 - E-Coli 0157:H7 Salmonella Enterica Servoar Typhimurium LT2 Enterococcus Faecalis Staphylococcus Aureus (Staph Infection MRSA) Streptococcus Pyrogenes Anti Bacteria effect

More information

The Attenuated Total Reflectance Infrared Microspectroscopy. of Bacterial Colonies on Agar Plates. An Honors Thesis (HONRS 499) Jennifer L.

The Attenuated Total Reflectance Infrared Microspectroscopy. of Bacterial Colonies on Agar Plates. An Honors Thesis (HONRS 499) Jennifer L. The Attenuated Total Reflectance Infrared Microspectroscopy of Bacterial Colonies on Agar Plates An Honors Thesis (HONRS 499) By Jennifer L. Hodges Thesis Advisor Patricia L. Lang Ball State University

More information

10ml. Set (4 poly and 17 monovalent, 2ml each)

10ml. Set (4 poly and 17 monovalent, 2ml each) 120314TR Bordetella pertussis Antigen 10ml Contents 1 Bordetella pertussis Antigen 1 Clostridium perfringens Type A 2 Escherichia coli 5 Legionella pneumophila 5 Listeria monocytogenes 6 Pseudomonas aeruginosa

More information

Stability. Received for publication 1 August to be fl-lactamase-producing strains.

Stability. Received for publication 1 August to be fl-lactamase-producing strains. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, Apr. 1978, p. 584-588 0066-4804/78/0013-0584$02.00/0 Copyright X) 1978 American Society for Microbiology Vol. 13, No. 4 Printed in U.S.A. Cefaclor: In Vitro Spectrum

More information

Evaluation of the Quantitative Dry Culture Method Sanitakun TM SA for the Enumeration of Staphylococcus aureus

Evaluation of the Quantitative Dry Culture Method Sanitakun TM SA for the Enumeration of Staphylococcus aureus Biocontrol Science, 2015, Vol. 20, No. 4, 297 301 Note Evaluation of the Quantitative Dry Culture Method Sanitakun TM SA for the Enumeration of Staphylococcus aureus in Artificially Contaminated Food Samples

More information

Whole Genome based Phylogeny

Whole Genome based Phylogeny Whole Genome based Phylogeny Johanne Ahrenfeldt PhD student DTU Bioinformatics Short about me Johanne Ahrenfeldt johah@dtu.dk PhD student at DTU Bioinformatics Whole Genome based Phylogeny Graduate Engineer

More information

EZ-COMP EZ-COMP For Training and Proficiency Testing Product Details

EZ-COMP EZ-COMP For Training and Proficiency Testing Product Details EZ-COMP For Training and Proficiency Testing Mixed microorganism populations Identified by codes rather than descriptions Refrigerated storage Traceable to reference culture Product warranty Product Details

More information

Evaluation of the Automated Phoenix System for Potential Routine Use in the Clinical Microbiology Laboratory

Evaluation of the Automated Phoenix System for Potential Routine Use in the Clinical Microbiology Laboratory JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 2004, p. 1542 1546 Vol. 42, No. 4 0095-1137/04/$08.00 0 DOI: 10.1128/JCM.42.4.1542 1546.2004 Copyright 2004, American Society for Microbiology. All Rights Reserved.

More information

Development of an improved selective and differential medium. for the isolation of Salmonella spp.

Development of an improved selective and differential medium. for the isolation of Salmonella spp. JCM Accepts, published online ahead of print on 18 July 2012 J. Clin. Microbiol. doi:10.1128/jcm.01228-12 Copyright 2012, American Society for Microbiology. All Rights Reserved. 1 2 3 4 5 6 7 8 9 10 11

More information

WHO Global Foodborne Infections Network (formerly WHO Global Salm-Surv)

WHO Global Foodborne Infections Network (formerly WHO Global Salm-Surv) WHO Global Foodborne Infections Network (formerly WHO Global Salm-Surv) "A WHO network building capacity to detect, control and prevent foodborne and other enteric infections from farm to table Laboratory

More information

11/5/2018. Update on Modern Bacterial Taxonomy for Bench Microbiologists. Why is Taxonomy Important? Bacterial Taxonomy for Clinical Microbiologists

11/5/2018. Update on Modern Bacterial Taxonomy for Bench Microbiologists. Why is Taxonomy Important? Bacterial Taxonomy for Clinical Microbiologists Update on Modern Bacterial Taxonomy for Bench Microbiologists J. Michael Janda Kern County Public Health Laboratory Bakersfield CA The Name Game Which Ones Different? Why is Taxonomy Important? Bacterial

More information

Advance View Proofs. (Received September 14, 2018 Accepted January 10, 2019 Published online March 28, 2019) Materials and Methods

Advance View Proofs. (Received September 14, 2018 Accepted January 10, 2019 Published online March 28, 2019) Materials and Methods Microbes Environ. Vol. 00, No. 0, 000-000, 2019 https://www.jstage.jst.go.jp/browse/jsme2 doi:10.1264/jsme2.me18128 Development of a New Semi-Selective Lysine-Ornithine-Mannitol-Arginine-Charcoal Medium

More information

vulnificus Biogroup 1

vulnificus Biogroup 1 JOURNAL OF CLINICAL MICROBIOLOGY, June 1983, p. 1039-1044 0095-1137/83/061039-06$02.00/0 Copyright ) 1983, American Society for Microbiology Vol. 17, No. 6 New Selective Plating Medium for Isolation of

More information

Validation of EUCAST zone diameter breakpoints against reference broth microdilution

Validation of EUCAST zone diameter breakpoints against reference broth microdilution ORIGINAL ARTICLE BACTERIOLOGY Validation of EUCAST zone diameter breakpoints against reference broth microdilution S. Bengtsson 1, C. Bjelkenbrant 1 and G. Kahlmeter 1,2 1) Department of Clinical Microbiology,

More information

Comparison of FecalSwab and ESwab devices for storage and transportation of diarrheagenic

Comparison of FecalSwab and ESwab devices for storage and transportation of diarrheagenic JCM Accepts, published online ahead of print on 16 April 2014 J. Clin. Microbiol. doi:10.1128/jcm.00539-14 Copyright 2014, American Society for Microbiology. All Rights Reserved. 1 1 2 Comparison of FecalSwab

More information

Comparison of 61 E. coli genomes

Comparison of 61 E. coli genomes Comparison of 61 E. coli genomes Center for Biological Sequence Analysis Department of Systems Biology Dave Ussery! DTU course 27105 - Comparative Genomics Oksana s 61 E. coli genomes paper! Monday, 23

More information

Evaluation of Accuracy and Repeatability of Identification of Food-Borne Pathogens by Automated Bacterial Identification Systems

Evaluation of Accuracy and Repeatability of Identification of Food-Borne Pathogens by Automated Bacterial Identification Systems JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 1999, p. 944 949 Vol. 37, No. 4 0095-1137/99/$04.00 0 Copyright 1999, American Society for Microbiology. All Rights Reserved. Evaluation of Accuracy and Repeatability

More information

Proteus & Pseudomonas

Proteus & Pseudomonas Proteus & Pseudomonas Ahmad Ausama Al-Kazzaz Anas Huthaifa AL-Dewachi Ameer Saadallah Zacko Al-Ta i Supervised by: Dr. Khalid Ahmad Ausama Al-Kazzaz Proteus Proteus is a genus of Gram-negative Proteobacteria

More information

Comparisons of Microbial Communities in a Sequencing Batch Reactor (Cromaglass Corporation) at Two Time Increments

Comparisons of Microbial Communities in a Sequencing Batch Reactor (Cromaglass Corporation) at Two Time Increments Comparisons of Microbial Communities in a Sequencing Batch Reactor (Cromaglass Corporation) at Two Time Increments By: Brittane Miller and Jeff Newman Lycoming College Williamsport, Pennsylvania What is

More information

NF VALIDATION Validation of alternative analytical methods Application in food microbiology. Summary report

NF VALIDATION Validation of alternative analytical methods Application in food microbiology. Summary report ACCREDITATION N 1-0144 PORTEE DISPONIBLE SUR WWW.COFRAC.FR 3M Boulevard de l Oise F-95006 CERGY PONTOISE NF VALIDATION Validation of alternative analytical methods Application in food microbiology Summary

More information

Enlargement of WHO Repository Transfusion Relevant Bacteria Reference Strains - Report on experimental preparatory work and study design

Enlargement of WHO Repository Transfusion Relevant Bacteria Reference Strains - Report on experimental preparatory work and study design WP-TTID Chair: Silvano Wendel, Brazil Subgroup on Bacteria Chair: Thomas Montag, Germany Co-Chair: Erica Wood, Australia Enlargement of WHO Repository Transfusion Relevant Bacteria Reference Strains -

More information

ANTIBIOTICS seem to have altered considerably the patterns of microbial

ANTIBIOTICS seem to have altered considerably the patterns of microbial EVALUATION OF SELLERS' MEDIUM FOR THE DIFFERENTIATION OF GRAM-NEGATIVE BACTERIA ARVIND G. BHAGWAT, M.D. (PATH.),* AND JOHN W. KING, M.D., PH.D. Department of Clinical Pathology ANTIBIOTICS seem to have

More information

ydci GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC

ydci GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC Table S1. DNA primers used in this study. Name ydci P1ydcIkd3 Sequence GTC TGT TTG AAC GCG GGC GAC TGG GCG CGC AAT TAA CGG TGT GTA GGC TGG AGC TGC TTC Kd3ydcIp2 lacz fusion YdcIendP1 YdcItrgP2 GAC AGC

More information

Effect of Coliform and Proteus Bacteria on Growth

Effect of Coliform and Proteus Bacteria on Growth APPLIED MICROBIOLOGY, Jan., 19 Copyright @ 19 American Society for Microbiology Vol. 14, No. 1 Printed in U.S.A. Effect of Coliform and Proteus Bacteria on Growth of Staphylococcus aureus1 J. V. DiGIACINTO2

More information

Considerations with Antibiotic Therapy PART

Considerations with Antibiotic Therapy PART Considerations with Antibiotic Therapy PART 1 The Wonderful World of Microbiology 1 Despite the promises of the household-products industry, almost every surface is covered in microorganisms almost all

More information

Activity of ampicillin in vitro compared with

Activity of ampicillin in vitro compared with J. clin. Path. (), 7, Activity of ampicillin in vitro compared with other antibiotics R. SUTHERLAND AND G. N. ROLINSON From the Beecham Research Laboratories Limited, Research Division, Betchworth, Surrey

More information

Phoenix 100 versus Vitek 2 in the Identification of Gram-Positive and Gram-Negative Bacteria: a Comprehensive Meta-Analysis

Phoenix 100 versus Vitek 2 in the Identification of Gram-Positive and Gram-Negative Bacteria: a Comprehensive Meta-Analysis JOURNAL OF CLINICAL MICROBIOLOGY, Sept. 2011, p. 3284 3291 Vol. 49, No. 9 0095-1137/11/$12.00 doi:10.1128/jcm.00182-11 Copyright 2011, American Society for Microbiology. All Rights Reserved. Phoenix 100

More information

Pharmaceutical Microbiology Forum Newsletter Vol. 12 (4) Page 3 of 14 (NCIMB 8545, CIP NBRC. Salmonella enterica ssp typhimurium

Pharmaceutical Microbiology Forum Newsletter Vol. 12 (4) Page 3 of 14 (NCIMB 8545, CIP NBRC. Salmonella enterica ssp typhimurium Page 3 of 14 Continued from page 2 Table 2. Absence of Specified Details Media Growth Promotion Organisms for Trypticase Soy Staphylococcus aureus Escherichia coli Pseudomonas aeruginosa Salmonella Staphylococcus

More information

_ + Discriminates aerobic organisms that produce catalase to degrade hydrogen peroxide into water and oxygen

_ + Discriminates aerobic organisms that produce catalase to degrade hydrogen peroxide into water and oxygen Lab 11 Goals and Objectives: Catalase Test Exercise 39: Oxidation and Fermentation Tests (Catalase) Exercise 67: Staphylococci Identification (MSA & Coagulase) Exercise 68: Streptococci & Enterococci Identification

More information

Evaluation of a Rapid Direct Assay for Identification of Bacteria and the meca and van Genes from Positive-Testing Blood Cultures

Evaluation of a Rapid Direct Assay for Identification of Bacteria and the meca and van Genes from Positive-Testing Blood Cultures JOURNAL OF CLINICAL MICROBIOLOGY, Oct. 2005, p. 5256 5262 Vol. 43, No. 10 0095-1137/05/$08.00 0 doi:10.1128/jcm.43.10.5256 5262.2005 Copyright 2005, American Society for Microbiology. All Rights Reserved.

More information

Research Article Evaluation of Verigene Blood Culture Test Systems for Rapid Identification of Positive Blood Cultures

Research Article Evaluation of Verigene Blood Culture Test Systems for Rapid Identification of Positive Blood Cultures BioMed Volume 2016, Article ID 1081536, 6 pages http://dx.doi.org/10.1155/2016/1081536 Research Article Evaluation of Verigene Blood Culture Test Systems for Rapid Identification of Positive Blood Cultures

More information

Resistance of Escherichia coli and Salmonella typhimurium to Carbenicillin

Resistance of Escherichia coli and Salmonella typhimurium to Carbenicillin J. gen. Microbiol. (1969, 58, 301-305 Printed in Great Britain 301 Resistance of Escherichia coli and Salmonella typhimurium to Carbenicillin By H. C. NEU AND H. S,WARZ Department of Medicine, College

More information

An Inclusivity and Exclusivity Evaluation of the Invisible Sentinel Veriflow Salmonella Species Method for the Detection of Salmonella species

An Inclusivity and Exclusivity Evaluation of the Invisible Sentinel Veriflow Salmonella Species Method for the Detection of Salmonella species An Inclusivity and Exclusivity Evaluation of the Invisible Sentinel Veriflow Salmonella Species for the Detection of Salmonella species AOAC PTM Evaluation September 20, 2013 Erin S. Crowley, Patrick M.

More information

PosterREPRINT RAPID IDENTIFICATION OF BACTERIA BY INTACT CELL MATRIX-ASSISTED LASER DESORPTION/IONISATION TIME OF FLIGHT MASS SPECTROMETRY

PosterREPRINT RAPID IDENTIFICATION OF BACTERIA BY INTACT CELL MATRIX-ASSISTED LASER DESORPTION/IONISATION TIME OF FLIGHT MASS SPECTROMETRY ABSTRACT RAPID IDENTIFICATION OF BACTERIA BY INTACT CELL MATRIX-ASSISTED LASER DESORPTION/IONISATION TIME OF FLIGHT MASS SPECTROMETRY Diane Dare 1, Helen Sutton 1, Carrina Keys 2, Haroun Shah 2, Therese

More information

Use of the 3M Molecular Detection System for Salmonella and Listeria spp.

Use of the 3M Molecular Detection System for Salmonella and Listeria spp. Use of the 3M Molecular Detection System for Salmonella and Listeria spp. March 11, 213 Prof Steve Forsythe Pathogen Research Centre, School of Science and Technology Nottingham Trent University Clifton

More information

PATHfinder. User Manual. PATHfinder Salmonella spp. Assay. Real-Time PCR kit for Salmonella spp. detection. Cat. # PMB01A/PMB01A-50

PATHfinder. User Manual. PATHfinder Salmonella spp. Assay. Real-Time PCR kit for Salmonella spp. detection. Cat. # PMB01A/PMB01A-50 PATHfinder PATHfinder Salmonella spp. Assay Real-Time PCR kit for Salmonella spp. detection Cat. # PMB01A/PMB01A-50 User Manual Via San Geminiano, 4 41030 San Prospero (MO)- Italy : +39 059 8637161 : +39

More information

In vitro the effect of intestinal normal flora on some pathogenic bacteria.

In vitro the effect of intestinal normal flora on some pathogenic bacteria. In vitro the effect of intestinal normal flora on some pathogenic bacteria. Abstract: Dr.abbass shaker Ali adel Leena abd Al-Redha The effect of two types of intestinal bacterial normal floral ( and klebsiella)

More information