- V. burejaeticum Regel et A, - JQ JQ JX JX JX JX JX V. carlesii Hemsl. Ex Forb. & Hemsl.
|
|
- Marlene White
- 5 years ago
- Views:
Transcription
1 Appendix A: Voucher information and Genbank accession numbers for Viburnum species sampled. Species are grouped by clade name (Clement and Donoghue 2011) and missing data are indicated by a "." For each species the Collector, Collector number and Herbarium where voucher is located is provided. Herbaria abbreviations are as follows: A: Arnold Arboretum, K: Kew Royal Botanic Garden, MO: Missouri Botanical Garden, NY: New York Botanical Garden; WTU: University of Washington Herbarium, YU Yale University Herbarium. Clade Species Collector Collection No. H psbatrnh rpl32 ITS trnk matk rbcl ndhf trncy6 trnsg petbd Coriacea V. coriaceum Bl. L. Averyanov et al. VH3300 MO HQ HQ HQ HQ HQ HQ HQ HQ HQ V. cylindricum Buch. Ham. ex D. Don Boufford et al A AY HQ AY AY HQ EF V. hebanthum Wight & Arn. J. Klackenberg 32 NY HQ HQ HQ HQ HQ HQ HQ HQ HQ Lantana V. bitchiuense Makino Arnold Arboretum A AA living collection JX JX JX JX JX JX JX JX JX JX V. buddleifolium C.H. 7533B, Wright Arnold Arboretum A JQ JQ JQ JX JX JX JX JX V. burejaeticum Regel et 37595A, Herder Arnold Arboretum A JQ JQ JQ JQ JX JX JX JX JX V. carlesii Hemsl. Ex Forb. & Hemsl. R.C. Winkworth 24 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ V. lantana 1 L. R.C. Winkworth 26 YU AY HQ AY AY HQ HQ HQ HQ EF HQ AA living B V. lantana 2 L. Arnold Arboretum collection JQ JQ JX JQ JX JQ JX JX JX V. macrocephalum Fortune M.J. Donoghue 101 YU HQ HQ EF EF HQ HQ HQ HQ HQ HQ V. mongolicum Rehder M.J. Donoghue s.n. YU HQ HQ EF EF HQ HQ HQ HQ HQ HQ V. rhytidophyllum Hemsl. Ex Forb. & Hemsl. R.C. Winkworth 8 YU HQ HQ AY AY HQ HQ HQ HQ HQ HQ V. schensianum Maxim. Boufford et al A HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ cultivated V. utile Hemsl. Egolf 2336E plant AY HQ AY AY HQ HQ HQ HQ EF HQ V. veitchii C.H. Wright Bouffourd et al A HQ HQ HQ HQ HQ HQ HQ HQ HQ Lentago V. cassinoides L. Arnold Arboretum 87485A, A HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ V. elatum Benth. M.J. Donoghue 472 YU AY HQ AY AY HQ HQ EF HQ V. lentago L. R.C. Winkworth 21 YU AY HQ AY AY HQ HQ HQ HQ EF HQ V. prunifolium L. R.C. Winkworth 13 YU AY HQ AY AY HQ HQ HQ HQ EF HQ V. rufidulum Raf. R.C. Winkworth 14 YU AY HQ AY AY HQ HQ HQ HQ EF HQ Lobata V. acerifolium L. R.C. Winkworth 27 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ V. kansuense Batalin Boufford et al A AY HQ AY AY HQ HQ HQ HQ EF HQ V. orientale Pall. Merello et al MO HQ HQ EF EF HQ HQ HQ HQ EF HQ Lutescentia V. colebrookeanum Wall. Parker 3220 A HQ HQ HQ HQ HQ HQ HQ HQ V. lutescens Blume Wu et al. WP531 A HQ HQ HQ HQ HQ HQ HQ HQ HQ Mollodontotinus A, V. bracteatum Rehder Arnold Arboretum A HQ HQ HQ HQ HQ HQ HQ HQ V. ellipticum Hook. M.J. Donoghue NVI AY AY AY HQ HQ HQ HQ HQ HQ V. molle Michx. R.C. Winkworth 5 YU AY HQ AY AY HQ HQ HQ HQ EF B, V. rafinesquianum Schult. Arnold Arboretum A JX JX JX JX JX JX JX JX JX JX Opulus V. edule (Michaux) Raf. NVI AY AY AY HQ HQ EF V. koreanum Nakai H. Yamaji 5170 MO HQ EF EF EF V. opulus L. W.L. Clement 250 YU HQ HQ HQ HQ HQ HQ HQ HQ V. sargentii Koehne R.C. Winkworth 17 YU AY HQ AY AY HQ HQ HQ HQ EF HQ A, V. trilobum Marshall Arnold Arboretum AA HQ HQ HQ HQ HQ HQ HQ HQ EF HQ Oreinodontotinus V. caudatum Greenm. M.J. Donoghue 64 YU HQ HQ HQ HQ HQ HQ , A V. dentatum 1 L. Arnold Arboretum JQ JQ JX JQ JX JX JX JX V. dentatum 2 L. R.C. Winkworth 33 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ AA living V. dentatum 3 L. Arnold Arboretum C collection JX JX JX JX JX JX JX JX JX A, A V. dentatum 4 L. Arnold Arboretum JQ JQ JQ JQ JX JQ JX JX JX B, A V. dentatum 5 L. Arnold Arboretum JQ JQ JQ JQ JQ JQ JX JX JX V. hartwegii Benth. M.J. Donoghue 486 YU AY HQ AY AY HQ HQ HQ HQ HQ V. loeseneri Graebn. M.J. Donoghue 2547 YU HQ HQ HQ HQ HQ HQ HQ HQ V. stenocalyx Hemsl. M.J. Donoghue 60 YU HQ HQ HQ HQ HQ HQ HQ HQ V. triphyllum Benth. P.W. Sweeney, W.L. Clement, J. Yepez. PWS1783 YU HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ Pseudotinus V. furcatum Bl. ex Hook.f. & Thomson Tsugaru & Takashi MO AY HQ AY AY HQ HQ HQ HQ EF HQ V. lantanoides Michx. R.C. Winkworth 2 YU AY HQ AY AY HQ HQ HQ HQ EF HQ V. nervosum D. Don Boufford et al A AY HQ AY AY HQ HQ HQ HQ EF V. sympodiale Graebn. Lai & Shan 4529 MO HQ HQ EF EF HQ HQ HQ EF HQ Punctata V. lepidotulum Merr. & Chun Lau A HQ HQ HQ HQ HQ591740
2 V. punctatum Buch.Ham. SinoBritish Ex D. Don Expedition 133 A HQ HQ HQ HQ HQ HQ HQ HQ HQ Sambucina V. inopinatum Craib Rock 1603 A HQ HQ JQ HQ V. ternatum Rehder Bartholomew et al A HQ HQ HQ HQ HQ HQ HQ HQ HQ Solenotinus V. amplificatum J. Kern Pereira et al. JTP 677 A HQ HQ HQ JQ V. awabuki Hort.Berol. Ex K. Koch Liu 141 A HQ HQ HQ HQ HQ HQ HQ HQ V. brachybotryum Hemsl. Ex Forb. & Hemsl. NVI HQ HQ HQ V. chingii P.S. Hsu Bartholomew et al. 973 A HQ HQ HQ HQ HQ V. erubescens Wall. Boufford et al A AY HQ AY AY HQ HQ HQ HQ HQ HQ V. farreri Stearn R.C. Winkworth 18 YU AY HQ AY AY HQ HQ HQ HQ EF HQ V. odoratissimum Ker Gawl. R. Olmstead 118 WTU AY HQ AY AY HQ HQ HQ HQ HQ V. oliganthum Batalin Bouffourd et al A HQ HQ HQ HQ HQ HQ HQ HQ V. sieboldii Miq. R.C. Winkworth 3 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ V. subalpinum Hand. Mazz. Heng A HQ HQ HQ HQ HQ HQ HQ HQ V. suspensum Lindl. R.C. Winkworth 36 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ Succodontotinus V. betulifolium Batalin Boufford et al A HQ HQ HQ HQ HQ HQ HQ V. cf. corylifolium Hook f. AA living & Thomson Arnold Arboretum 10399A collection JX JX JX JX JX JX JX JX JX V. dilatatum Thunberg R.C. Winkworth 19 YU AY HQ AY AY HQ HQ HQ HQ HQ V. erosum Thunberg R.C. Winkworth 16 YU AY HQ AY AY HQ HQ HQ HQ EF HQ V. flavescens W.W. Smith Boufford et al A HQ HQ HQ HQ HQ HQ HQ JX HQ V. foetidum Wall. C.H. Lin 563 MO HQ HQ HQ EF HQ HQ HQ JX HQ V. hupehense Rehder Bartholomew et al A HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ V. ichangense Rehder Bartholomew et al A HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ V. japonicum Spreng NVI AY HQ AY AY HQ HQ HQ HQ HQ HQ V. lobophyllum Graebn. R.C. Winkworth 25 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ V. luzonicum Rolfe Shen 673 A HQ HQ HQ HQ HQ HQ JX HQ JX HQ V. melanocarpum P.S. Hsu R.C. Winkworth 12 YU AY HQ AY AY HQ HQ HQ HQ HQ V. sempervirens K. Koch Hu & But A HQ HQ HQ HQ HQ HQ HQ V. setigerum Hance M.J. Donoghue 102 YU HQ HQ HQ EF HQ HQ HQ HQ HQ HQ V. wrightii Miquel Yonekura 1362 A HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ Tinus V. atrocyaneum C.B. Clarke Boufford et al A HQ HQ HQ HQ HQ HQ HQ HQ HQ HQ V. calvum Rehder Li & Soukup 934 A HQ HQ HQ HQ HQ HQ HQ HQ JX HQ V. cinnamomifolium Rehder Olmstead 120 WTU AY HQ AY AY HQ HQ HQ HQ HQ HQ V. propinquum Hemsl. M.J. Donoghue 100 YU HQ HQ EF EF HQ HQ HQ HQ V. rigidum Ventenat Stearn 1116 A HQ HQ HQ HQ HQ HQ HQ HQ V. tinus L. R.C. Winkworth 35 YU AY HQ AY AY HQ HQ HQ HQ HQ HQ Tomentosa V. plicatum Thunberg R.C. Winkworth 10 YU AY HQ AY AY HQ HQ HQ HQ EF HQ Unassigned V. clemensiae Kern J. Beaman K AY HQ AY AY HQ HQ HQ HQ EF HQ V. taiwanianum Hayata W.H. Hu et al MO HQ HQ EF EF HQ HQ HQ HQ HQ V. urceolatum S. & Z. M.J. Donoghue NVI AY HQ AY AY HQ HQ HQ HQ HQ592053
3 Appendix B. Quantifying leaf shape: We assembled leaf images for 88 focal taxa both from living Viburnum plants at the Arnold Arboretum of Harvard University (Jamaica Plain, MA) and from herbarium specimens in the Harvard University Herbaria (HUH) and the Yale Herbarium in the Peabody Museum of Natural History (YU). For the living collections (39 taxa) we photographed the adaxial surface of individual leaves on a white background with a scale bar. For herbarium specimens (49 taxa), we photographed entire herbarium sheets and then digitally traced and excised individual leaves, which were scaled and cropped into their own image files. We digitally cropped the petiole from each leaf, and scaled, reoriented, and binarized these images so that each contained a black silhouette of the adaxial lamina surface on a white background. The resulting dataset included individual leaf images for each taxon. We quantified the leaf outline directly using Elliptical Fourier analysis (EFA). This allows the outline of any closed, twodimensional shape to be quantified numerically, as a series of coefficients describing a set of harmonic ellipses [1]. McLellan and Endler [2] found that EFA described complex leaf shapes better than either singleparameter metrics of outline shape or traditional multivariate analysis of linear landmark measurements. We used the software suite SHAPE ver. 1.3 [3] to quantify the leaf outline using EFA for the lamina silhouette in each leaf image. We extracted the lamina outline as a chain code, rotationally aligning all outlines along a common homologous vector (leaf midrib), and calculated the elliptic Fourier descriptors for 300 harmonic ellipses for each laminar outline; this was the maximum number of harmonics possible with this software, producing the best possible fit to the original outline. In EFA, size can be represented as a function of the 0th Fourier harmonic. However, our preliminary analyses found size to be by far the greatest component of overall shape, obscuring other components of leaf morphology. Therefore we set SHAPE to scale our elliptic Fourier descriptors so that the 0th harmonic was constant across all leaves, which effectively controlled for variability in size. We then considered size separately from overall shape, measuring leaf area directly from the leaf images. We used principal component analysis (PCA) to reduce the large set of potentially correlated Fourier descriptors to a smaller set of uncorrelated principal components. These principal components defined independent axes of shape variation in lamina outline, allowing the principal component scores for a leaf to be treated as
4 continuous morphological characters. Because traditional PCA relies on the assumption that all observations are independent, we also performed a phylogenetic PCA [4] using the phylogeny described above. Because these analyses are far more computationally intensive, we analyzed a 10% subsample of the 300 harmonic ellipses (the first 120 EFD coefficients, describing 30 harmonic ellipses). Our phylogenetic PCA analysis produced nearly identical results to the nonphylogenetic analyses: in both cases, the first two principal component axes together accounted for > 95% of the variation in leaf shape observed in Viburnum. These axes showed a slight yet significant phylogenetic signal. Multivariate lambda for the principal component axes was near zero (λ 0.045). Nevertheless, the multivariate lambda value calculated was a better fit (AIC= ) than a multivariate lambda of zero (AIC= ). We conducted all subsequent regression analyses using the phylogenetic PCA axes only. References: 1 Kuhl, F. & Giardina, C Elliptic Fourier features of a closed contour. Computer Graphics and Image Processing 18, McLellan, T. & Endler, J The relative success of some methods for measuring and describing the shape of complex objects. Systematic Biology 47, Iwata, H. & Ukai, Y SHAPE: a computer program package for quantitative evaluation of biological shapes based on elliptic Fourier descriptors. J. Hered. 93, Revell, L. J Sizecorrection and principal components for interspecific comparative studies. Evolution 63, (doi: /j x)
5 Supplemental Table 1. Testing for correlated trait evolution using maximum likelihood. Dependent indicates correlated evolution; bestchosen model highlighted in bold. Independent Dependent Dependent Dependent Equalrates Symmetricrates Allratesdifferent lnlik AIC lnlik AIC lnlik AIC lnlik AIC HabitatA x MarginTypeA HabitatA x MarginTypeB HabitatA x LeafHabitA HabitatA x LeafHabitB HabitatB x MarginTypeA HabitatB x MarginTypeB HabitatB x LeafHabitA HabitatB x LeafHabitB HabitatC x MarginTypeA HabitatC x MarginTypeB HabitatC x LeafHabitA HabitatC x LeafHabitB HabitatA: tropical vs. cloud forest, warm temperate, and cold temperate (TR vs. CL+WT+CT); HabitatB: cold temperate vs. tropical, warm temperate, and cloud forest (CT vs. TR+WT+CL); HabitatC: tropical and cloud forest vs. warm temperate and cold temperate (TR+CL vs. WT+CT); MarginTypeA: entire margins vs. prominent, regular teeth and reduced/irregular teeth (EN vs. PT+RT); MarginTypeB: prominent, regular teeth vs. reduced/irregular teeth and entire margins (PT vs. RT+EN); LeafHabitA: evergreen vs. leafexchanger and seasonally deciduous (EV vs. LE+SD); LeafHabitB: seasonally deciduous vs. leafexchanger and evergreen (SD vs. LE+EV).
6 Supplemental Table 2. Phylogenetic regressions between continuous response variables and discrete character states. Bestchosen models are highlighted in bold. Habitat Leaf Habit Margin Type CT vs. TR+WT+CL TR+CL vs. WT+CT TR vs. CL+WT+CT EV vs. LE+SD SD vs. LE+EV PT vs. RT+EN EN vs. PT+RT PC1 Brownian loglik AIC pvalue OU alpha loglik AIC pvalue Lambda lambda loglik AIC pvalue Leaf Brownian loglik Size AIC pvalue OU alpha loglik AIC pvalue Lambda lambda loglik AIC pvalue CT= cold temperate; WT= warm temperate; CL= cloud forest; TR=tropical; EV=evergreen; LE=leafexchanger; SD=seasonally deciduous; EN=entire margins; RT=reduced/irregular teeth; PT=prominent, regular teeth.
7 Supplemental Table 3. Phylogenetic regressions between sets of continuous variables. Bestchosen model highlighted in bold. Brownian OrnsteinUhlenbeck Lambda loglik AIC pvalue alpha loglik AIC pvalue lambda loglik AIC pvalue PC1~MAT PC1~T season PC1~cold quarter PC1~warm quarter PC1~MAP PC1~D teeth PC1~size Size~MAT Size~ T season Size~MAP D teeth ~MAT D teeth ~T season D teeth = # teeth*cm 1 ; MAT = Mean Annual Temperature; T season = Temperature seasonality (standard deviation of monthly temperatures*100); cold quarter= Mean Temperature of the coldest quarter; warm quarter=mean Temperature of the warmest quarter; MAP=Mean Annual Precipitation
8 percentage of Viburnum species with toothed leaves Ecuador 0/8 Sabah 0/4 Guatemala 3/8 Luzon 2/6 Puebla 4/5 Taiwan 7/12 Arkansas 5/6 Kyushu 9/11 Asia The Americas Hokaido 5/5 Maine 6/ o Latitude ( N) Supplementary Figure 1. Latitudinal gradient in leaf margins in Viburnum. In both the Old World and the New World there are more species with entire margins (or highly reduced teeth) at lower latitudes, and more with prominently toothed margins at high latitudes. Each dot marks the midpoint of the latitudinal range of the named geographic region; ratio indicates the number of species with teeth/total number of species in the region.
9 probability of being tropical probability of being evergreen Supplementary Figure 2. Correlations between probabilites of character states at internal nodes in Viburnum probability of having entire margins
Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms
Clement and Donoghue BMC Evolutionary Biology 2012, 12:73 RESEARCH ARTICLE Open Access Barcoding success as a function of phylogenetic relatedness in Viburnum, a clade of woody angiosperms Wendy L Clement
More informationEvolution of leaf form correlates with tropical temperate
volution of leaf form correlates with tropical temperate transitions in Viburnum (Adoxaceae) Samuel B. Schmerler, Wendy L. Clement, Jeremy M. Beaulieu, David S. Chatelet, Lawren Sack, Michael J. Donoghue
More informationW 1TH ARNOLDIA BULLETIN OF POPULAR INFORMATION. A continuation of the
RNOLDI continuation of the ULLETIN OF POPULR INFORMTION of the rnold rboretum, Harvard University VOLUME 19 SEPTEMER 25, 1959 NUMERS 8-9 W 1TH VIURNUMS some 96 species and varieties of viburnums growing
More informationViburnum phylogeny: evidence from the duplicated
Molecular Phylogenetics and Evolution 33 (2004) 109 126 MOLECULAR PHYLOGENETICS AND EVOLUTION www.elsevier.com/locate/ympev Viburnum phylogeny: evidence from the duplicated nuclear gene GBSSI Richard C.
More informationManagement of the Viburnum Leaf Beetle at the Morris Arboretum
University of Pennsylvania ScholarlyCommons Internship Program Reports Education and Visitor Experience 2017 Management of the Viburnum Leaf Beetle at the Morris Arboretum Anna Giesmann University of Pennsylvania
More informationGEOMETRIC MORPHOMETRICS. Adrian Castellanos, Michelle Chrpa, & Pedro Afonso Leite
GEOMETRIC MORPHOMETRICS Adrian Castellanos, Michelle Chrpa, & Pedro Afonso Leite WHAT IS MORPHOMETRICS? Quantitative analysis of form, a concept that encompasses size and shape. Analyses performed on live
More informationCorrelation, causation, and the evolution of leaf teeth: A reply to Givnish and Kriebel 1
RESEARCH ARTICLE AMERICAN JOURNAL OF BOTANY COMMENTARY (Response to Am. J. Bot. 104: 354 356) Correlation, causation, and the evolution of leaf teeth: A reply to Givnish and Kriebel 1 Erika J. Edwards2,
More informationPreviously Used Scientific Names: Viburnum dentatum L. var. bracteatum
Common Name: LIMEROCK ARROW-WOOD Scientific Name: Viburnum bracteatum Rehder Other Commonly Used Names: none Previously Used Scientific Names: Viburnum dentatum L. var. bracteatum Family: Caprifoliaceae
More informationSupporting Information Appendix
Supporting Information Appendix Diefendorf, Mueller, Wing, Koch and Freeman Supporting Information Table of Contents Dataset Description... 2 SI Data Analysis... 2 SI Figures... 8 SI PETM Discussion...
More informationShape Descriptors in Morphological Galaxy Classification
Shape Descriptors in Morphological Galaxy Classification Ishita Dutta 1, S. Banerjee 2 & M. De 3 1&2 Department of Natural Science, West Bengal University of Technology 3 Department of Engineering and
More informationUnit 5.2. Ecogeographic Surveys - 1 -
Ecogeographic Surveys Unit 5.2 Ecogeographic Surveys - 1 - Objectives Ecogeographic Surveys - 2 - Outline Introduction Phase 1 - Project Design Phase 2 - Data Collection and Analysis Phase 3 - Product
More informationDo long-distance migratory birds track their niche through seasons?
Supplementary Information for: Do long-distance migratory birds track their niche through seasons? Damaris Zurell, Laure Gallien, Catherine H. Graham, and Niklaus E. Zimmermann Table of contents: - Supplementary
More informationQuantitative evolution of morphology
Quantitative evolution of morphology Properties of Brownian motion evolution of a single quantitative trait Most likely outcome = starting value Variance of the outcomes = number of step * (rate parameter)
More informationTHI; beauty and interest of tuauv a shrub lonoler is greatly enhanced
ARNOLD ARBORETUM HARVARD UNIVERSITY ~ BULLETIN OF POPULAR INFORMATION SERIES 4. VOL. V DECEMBER 10, 1987 NUMBERS 1~-15 VIBURNUMS THI; beauty and interest of tuauv a shrub lonoler is greatly enhanced by
More informationGarryaceae. Aucuba Thunb. Garrya Douglas ex Lindl. VEGETATIVE KEY TO SPECIES CULTIVATED IN WESTERN EUROPE. Jan De Langhe
Garryaceae Aucuba Thunb. Garrya Douglas ex Lindl. VEGETATIVE KEY TO SPECIES CULTIVATED IN WESTERN EUROPE Jan De Langhe (10 March 2016-24 February 2017) Vegetative identification key. Introduction: This
More informationPlant Species Identification using Digital Morphometrics: a Review
Plant Species Identification using Digital Morphometrics: a Review James S. Cope a, David Corney b,, Jonathan Y. Clark b, Paolo Remagnino a, Paul Wilkin c a Digital Imaging Research Centre, Kingston University,
More informationSpatial Effects on Current and Future Climate of Ipomopsis aggregata Populations in Colorado Patterns of Precipitation and Maximum Temperature
A. Kenney GIS Project Spring 2010 Amanda Kenney GEO 386 Spring 2010 Spatial Effects on Current and Future Climate of Ipomopsis aggregata Populations in Colorado Patterns of Precipitation and Maximum Temperature
More informationWorksheet 4 - Multiple and nonlinear regression models
Worksheet 4 - Multiple and nonlinear regression models Multiple and non-linear regression references Quinn & Keough (2002) - Chpt 6 Question 1 - Multiple Linear Regression Paruelo & Lauenroth (1996) analyzed
More informationMucuna japonica Nakai (Leguminosae)
J. Jpn. Bot. 87: 365 374 (2012) Mucuna japonica Nakai (Leguminosae) Hiroyoshi OHASHI a, *, Yoichi TATEISHI b and Hiroshi IKEDA c a Herbarium, Botanical Garden, Tohoku University, Sendai, Miyagi, 980-0862
More informationMinor Research Project
Executive Summary Minor Research Project DNA BARCODING OF MURDANNIA (COMMELINACEAE) IN WESTERN GHATS MRP (S)-1409/11-12/KLMG002/UGC-SWRO By Rogimon P. Thomas Assistant Professor Department of Botany CMS
More informationBRIEF COMMUNICATIONS
Evolution, 59(12), 2005, pp. 2705 2710 BRIEF COMMUNICATIONS THE EFFECT OF INTRASPECIFIC SAMPLE SIZE ON TYPE I AND TYPE II ERROR RATES IN COMPARATIVE STUDIES LUKE J. HARMON 1 AND JONATHAN B. LOSOS Department
More informationregions such as Greenland, northern Europe
. The Asian Connection,,., Robert E. Cook.- While Arboretum horticulturists have tested the hardiness of east Asian plants in the Boston climate, botanists have been theorizing about the causes of their
More informationBiol 206/306 Advanced Biostatistics Lab 11 Models of Trait Evolution Fall 2016
Biol 206/306 Advanced Biostatistics Lab 11 Models of Trait Evolution Fall 2016 By Philip J. Bergmann 0. Laboratory Objectives 1. Explore how evolutionary trait modeling can reveal different information
More informationRapid evolution of the cerebellum in humans and other great apes
Rapid evolution of the cerebellum in humans and other great apes Article Accepted Version Barton, R. A. and Venditti, C. (2014) Rapid evolution of the cerebellum in humans and other great apes. Current
More informationMultivariate Statistics 101. Ordination (PCA, NMDS, CA) Cluster Analysis (UPGMA, Ward s) Canonical Correspondence Analysis
Multivariate Statistics 101 Ordination (PCA, NMDS, CA) Cluster Analysis (UPGMA, Ward s) Canonical Correspondence Analysis Multivariate Statistics 101 Copy of slides and exercises PAST software download
More informationA Protocol for the Creation of Useful Geometric Shape Metrics Illustrated with a Newly Derived Geometric Measure of Leaf Circularity
A Protocol for the Creation of Useful Geometric Shape Metrics Illustrated with a Newly Derived Geometric Measure of Leaf Circularity Author(s): Jonathan D. Krieger Source: Applications in Plant Sciences,
More informationPlastral pigmentation symmetries in Western Hermann's tortoise (Testudo hermannihermanni)
Available online at www.scholarsresearchlibrary.com European Journal of Zoological Research, 2015, 4 (1):46-51 (http://scholarsresearchlibrary.com/archive.html) Plastral pigmentation symmetries in Western
More informationSupplementary Figure 1 Current and future distribution of temperate drylands. (a b-f b-f
Supplementary Figure 1 Current and future distribution of temperate drylands. (a) Five temperate dryland regions with their current extent for 1980-2010 (green): (b) South America; (c) North America; (d)
More informationSupplemental Data. Vanneste et al. (2015). Plant Cell /tpc
Supplemental Figure 1: Representation of the structure of an orthogroup. Each orthogroup consists out of a paralogous pair representing the WGD (denoted by Equisetum 1 and Equisetum 2) supplemented with
More informationThe Chromosome Numbers of Four Gesneriaceae Species Native to Japan
Bull. Natl. Mus. Nat. Sci., Ser. B, 43(2), pp. 57 61, May 22, 2017 The Chromosome Numbers of Four Gesneriaceae Species Native to Japan Goro Kokubugata 1, *and Masatsugu Yokota 2 1 Department of Botany,
More informationImprovement of Quantitative Evaluation Method for Plant Type of Rice
Improvement of Quantitative Evaluation Method for Plant Type of Rice Katsuaki Suzuki 1, Zeyu Zheng 2 and Yutaka Hirata 1 1 Laboratory of Plant Genetics and Biotechnology, Tokyo University of Agriculture
More informationAn introduction to the picante package
An introduction to the picante package Steven Kembel (steve.kembel@gmail.com) April 2010 Contents 1 Installing picante 1 2 Data formats in picante 2 2.1 Phylogenies................................ 2 2.2
More informationHistory INVASIVE INSECTS THREATENING YOUR BACKYARD: BROWN MARMORATED STINK BUG & VIBURNUM LEAF BEETLE. Identification. Common Look-A-Likes 1/12/2015
History INVASIVE INSECTS THREATENING YOUR BACKYARD: BROWN MARMORATED STINK BUG & VIBURNUM LEAF BEETLE Native to Asia First discovered in Pennsylvania, 1998 David R. Lance, USDA APHIS PPQ Adults emerge
More informationSupplement of Vegetation greenness and land carbon-flux anomalies associated with climate variations: a focus on the year 2015
Supplement of Atmos. Chem. Phys., 17, 13903 13919, 2017 https://doi.org/10.5194/acp-17-13903-2017-supplement Author(s) 2017. This work is distributed under the Creative Commons Attribution 3.0 License.
More informationResilience potential of the Ethiopian coffee sector under climate change
In the format provided by the authors and unedited. SUPPLEMENTARY INFORMATION VOLUME: 3 ARTICLE NUMBER: 17081 Resilience potential of the Ethiopian coffee sector under climate change Justin Moat 1,2 *,
More informationSupporting Online Material for
www.sciencemag.org/cgi/content/full/322/5899/258/dc1 Supporting Online Material for Global Warming, Elevational Range Shifts, and Lowland Biotic Attrition in the Wet Tropics Robert K. Colwell,* Gunnar
More informationConnecting Content Information Connections Research SAA Research Forum August
Connecting Content Information Connections Research SAA Research Forum August 23 2011 Richard T. Fischer, MLS Information Connections Research Intern Connecting Content: Project Background The California
More informationBetty LaDuke. Biomes of the World PRESERVATION OF OREGON S ARTISTIC HERITAGE PROJECT. Grade Level no grade level listed on the word document
Betty LaDuke PRESERVATION OF OREGON S ARTISTIC HERITAGE PROJECT Biomes of the World Grade Level no grade level listed on the word document Theme The artist in his or her environment Curriculum Framework
More informationIntroduction. Ludwigia alternifolia, Peter Hoch
Introduction Ludwigia alternifolia, Peter Hoch The plant family Onagraceae is divided into two subfamilies, Ludwigioideae, with only genus Ludwigia of 82 species and 22 sections, and Onagroideae, which
More informationCHAPTER 1: INTRODUCTION
CHAPTER 1: INTRODUCTION There is now unequivocal evidence from direct observations of a warming of the climate system (IPCC, 2007). Despite remaining uncertainties, it is now clear that the upward trend
More informationClimate, niche evolution, and diversification of the bird cage evening primroses (Oenothera, sections Anogra and Kleinia)
Climate, niche evolution, and diversification of the bird cage evening primroses (Oenothera, sections Anogra and Kleinia) Margaret Evans, Post-doc; YIBS, EEB, Yale University Stephen Smith, PhD student;
More informationSecond Year Annual Report - Botany
Darwin Initiative Project 17-022 Conservation of the Lowland Savannas of Belize Second Year Annual Report - Botany April 2010 March 2011 Zoë Goodwin Summary of Year 2 Activities...3 Project website launched
More informationClimate Change and Biomes
Climate Change and Biomes Key Concepts: Greenhouse Gas WHAT YOU WILL LEARN Biome Climate zone Greenhouse gases 1. You will learn the difference between weather and climate. 2. You will analyze how climate
More informationRemote vegetation feedbacks and the mid-holocene Green Sahara
Remote vegetation feedbacks and the mid-holocene Green Sahara Abigail L.S. Swann University of Washington work with: Inez Fung, John Chiang, & Yuwei Liu ~6 years ago, the Sahara more like the Sahel Mike
More informationDiscrete & continuous characters: The threshold model
Discrete & continuous characters: The threshold model Discrete & continuous characters: the threshold model So far we have discussed continuous & discrete character models separately for estimating ancestral
More informationHarvesting and harnessing data for biogeographical research
How do we know what grows where? Harvesting and harnessing data for biogeographical research A. Geography Tree B. Species Tree inventories and surveys natural areas, preserves, state forests, private properties
More informationMultivariate Ordination Analyses: Principal Component Analysis. Dilys Vela
Multivariate Ordination Analyses: Principal Component Analysis Dilys Vela Tatiana Boza Multivariate Analyses A multivariate data set includes more than one variable ibl recorded dd from a number of replicate
More informationFossil Journal. Nature in the Classroom. Slater Museum of Natural History University of Puget Sound Tacoma, Washington
Fossil Journal Nature in the Classroom Slater Museum of Natural History University of Puget Sound Tacoma, Washington Name: School: Grade: Start date: End date: Table of Contents Page 4 Fossilization Diagram
More informationDo plant defenses predict damage by an invasive herbivore? A comparative study of the viburnum leaf beetle
Ecological Applications, 24(4), 2014, pp. 759 769 Ó 2014 by the Ecological Society of America Do plant defenses predict damage by an invasive herbivore? A comparative study of the viburnum leaf beetle
More informationCLASS XI BIOLOGY NOTES CHAPTER 1: LIVING WORLD
CLASS XI BIOLOGY NOTES CHAPTER 1: LIVING WORLD Biology is the science of life forms and non-living processes. The living world comprises an amazing diversity of living organisms. In order to facilitate
More informationPackage OUwie. August 29, 2013
Package OUwie August 29, 2013 Version 1.34 Date 2013-5-21 Title Analysis of evolutionary rates in an OU framework Author Jeremy M. Beaulieu , Brian O Meara Maintainer
More informationClimate Classification
Chapter 15: World Climates The Atmosphere: An Introduction to Meteorology, 12 th Lutgens Tarbuck Lectures by: Heather Gallacher, Cleveland State University Climate Classification Köppen classification:
More informationPHYTOTAXA ISSN (online edition)
Phytotaxa 247 (4): 274 280 http://www.mapress.com/j/pt/ ISSN 1179-3155 (print edition) Copyright 2016 Magnolia Press Article PHYTOTAXA ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.247.4.5
More informationSupplementary material to Whitney, K. D., B. Boussau, E. J. Baack, and T. Garland Jr. in press. Drift and genome complexity revisited. PLoS Genetics.
Supplementary material to Whitney, K. D., B. Boussau, E. J. Baack, and T. Garland Jr. in press. Drift and genome complexity revisited. PLoS Genetics. Tree topologies Two topologies were examined, one favoring
More information823. BERBERIS YILIANGENSIS Berberidaceae. Julian Harber
823. BERBERIS YILIANGENSIS Berberidaceae Julian Harber In 2000 I received two packets of Berberis seeds from Alan Clark, a by-product of one of his expeditions to China in search of Rhododendron. Though
More informationStatistical nonmolecular phylogenetics: can molecular phylogenies illuminate morphological evolution?
Statistical nonmolecular phylogenetics: can molecular phylogenies illuminate morphological evolution? 30 July 2011. Joe Felsenstein Workshop on Molecular Evolution, MBL, Woods Hole Statistical nonmolecular
More informationX X (2) X Pr(X = x θ) (3)
Notes for 848 lecture 6: A ML basis for compatibility and parsimony Notation θ Θ (1) Θ is the space of all possible trees (and model parameters) θ is a point in the parameter space = a particular tree
More informationRegional Climatology. Lab Number Two (10pts) Climatic Classification and Polar Climates
Name: Time of Class: Due Date: Regional Climatology Lab Number Two (10pts) Climatic Classification and Polar Climates Part I: Group Discussion and Answer Directions: Arrange a group of three individuals.
More informationLATITUDINAL VARIATION IN SPECIATION MECHANISMS IN FROGS
ORIGINAL ARTICLE doi:10.1111/j.1558-5646.2009.00836.x LATITUDINAL VARIATION IN SPECIATION MECHANISMS IN FROGS Xia Hua 1,2 and John J. Wiens 1,3 1 Department of Ecology and Evolution, Stony Brook University,
More informationTHEORY. Based on sequence Length According to the length of sequence being compared it is of following two types
Exp 11- THEORY Sequence Alignment is a process of aligning two sequences to achieve maximum levels of identity between them. This help to derive functional, structural and evolutionary relationships between
More informationStress Deciduous Phenology in the CLM
Stress Deciduous Phenology in the CLM Kyla Dahlin & Rosie Fisher February 25, 2014 image credit: Forrest Copeland talesfromthebigcountry.wordpress.com Can we accurately model seasonal changes in vegetation
More informationINCREASED RATES OF MOLECULAR EVOLUTION IN AN EQUATORIAL PLANT CLADE: AN EFFECT OF ENVIRONMENT OR PHYLOGENETIC NONINDEPENDENCE?
Evolution, 59(1), 2005, pp. 238 242 INCREASED RATES OF MOLECULAR EVOLUTION IN AN EQUATORIAL PLANT CLADE: AN EFFECT OF ENVIRONMENT OR PHYLOGENETIC NONINDEPENDENCE? JEREMY M. BROWN 1,2 AND GREGORY B. PAULY
More informationSmith et al. American Journal of Botany 98(3): Data Supplement S2 page 1
Smith et al. American Journal of Botany 98(3):404-414. 2011. Data Supplement S1 page 1 Smith, Stephen A., Jeremy M. Beaulieu, Alexandros Stamatakis, and Michael J. Donoghue. 2011. Understanding angiosperm
More informationAPPENDIX S1: DESCRIPTION OF THE ESTIMATION OF THE VARIANCES OF OUR MAXIMUM LIKELIHOOD ESTIMATORS
APPENDIX S1: DESCRIPTION OF THE ESTIMATION OF THE VARIANCES OF OUR MAXIMUM LIKELIHOOD ESTIMATORS For large n, the negative inverse of the second derivative of the likelihood function at the optimum can
More informationBALLYGUNGE CAMPUS (Library of the Department of TPSP)
DATABASE OF JOURNALS (OLD ISSUES) BALLYGUNGE CAMPUS (Library of the Department of TPSP) Anthropologist Physical Anthropology English Quarterly University of California Press English Monthly Association
More informationPrincipal Components Analysis (PCA)
Principal Components Analysis (PCA) Principal Components Analysis (PCA) a technique for finding patterns in data of high dimension Outline:. Eigenvectors and eigenvalues. PCA: a) Getting the data b) Centering
More informationInquiry: The University of Arkansas Undergraduate Research Journal. Volume 5 Article 15
Inquiry: The University of Arkansas Undergraduate Research Journal Volume 5 Article 15 Fall 2004 Last Frost Project Midori Kubozono University of Arkansas, Fayetteville Follow this and additional works
More informationDoes convergent evolution always result from different lineages experiencing similar
Different evolutionary dynamics led to the convergence of clinging performance in lizard toepads Sarin Tiatragula 1 *, Gopal Murali 2 *, James T. Stroud 3 1 Department of Biological Sciences, Auburn University,
More informationCalystegia vanzuukiae (Convolvulaceae), a Remarkable New Species From Central California
Aliso: A Journal of Systematic and Evolutionary Botany Volume 31 Issue 1 Article 3 2013 Calystegia vanzuukiae (Convolvulaceae), a Remarkable New Species From Central California R. K. Brummitt Royal Botanic
More informationNeed for systematics. Applications of systematics. Linnaeus plus Darwin. Approaches in systematics. Principles of cladistics
Topics Need for systematics Applications of systematics Linnaeus plus Darwin Approaches in systematics Principles of cladistics Systematics pp. 474-475. Systematics - Study of diversity and evolutionary
More informationWhat is the range of a taxon? A scaling problem at three levels: Spa9al scale Phylogene9c depth Time
What is the range of a taxon? A scaling problem at three levels: Spa9al scale Phylogene9c depth Time 1 5 0.25 0.15 5 0.05 0.05 0.10 2 0.10 0.10 0.20 4 Reminder of what a range-weighted tree is Actual Tree
More informationThe Tempo of Macroevolution: Patterns of Diversification and Extinction
The Tempo of Macroevolution: Patterns of Diversification and Extinction During the semester we have been consider various aspects parameters associated with biodiversity. Current usage stems from 1980's
More informationPhyQuart-A new algorithm to avoid systematic bias & phylogenetic incongruence
PhyQuart-A new algorithm to avoid systematic bias & phylogenetic incongruence Are directed quartets the key for more reliable supertrees? Patrick Kück Department of Life Science, Vertebrates Division,
More informationTHE OHIO JOURNAL OF SCIENCE
THE OHIO JOURNAL OF SCIENCE Vol. 60 SEPTEMBER, 1960 No. 5 THE GENUS TILIA IN OHIO* E. LUCY BRAUN 5956 Salem Road, Cincinnati 30, Ohio Examination of about 250 Ohio specimens of Tilia shows that the Ohio
More informationThe genus Anthurium in Central America morphology, ecology, and evolution
5 µm The genus Anthurium in Central America morphology, ecology, and evolution A. chiapasense A. lucens A. umbrosum Angie Macias, Cornell University (amm369@cornell.edu) A. salvadorense Mentor: Dr. Mónica
More informationIntroduction to multivariate analysis Outline
Introduction to multivariate analysis Outline Why do a multivariate analysis Ordination, classification, model fitting Principal component analysis Discriminant analysis, quickly Species presence/absence
More informationSection 8. North American Biomes. What Do You See? Think About It. Investigate. Learning Outcomes
Section 8 North American Biomes What Do You See? Learning Outcomes In this section, you will Define the major biomes of North America and identify your community s biome. Understand that organisms on land
More informationLecture V Phylogeny and Systematics Dr. Kopeny
Delivered 1/30 and 2/1 Lecture V Phylogeny and Systematics Dr. Kopeny Lecture V How to Determine Evolutionary Relationships: Concepts in Phylogeny and Systematics Textbook Reading: pp 425-433, 435-437
More informationMultivariate Analysis of Ecological Data using CANOCO
Multivariate Analysis of Ecological Data using CANOCO JAN LEPS University of South Bohemia, and Czech Academy of Sciences, Czech Republic Universitats- uric! Lanttesbibiiothek Darmstadt Bibliothek Biologie
More informationIntroduction to maps
Introduction to maps What is a map? A generalized view of an area, usually some portion of Earth s surface, as seen from above at a greatly reduced size Any geographical image of the environment A two-dimensional
More informationDNA-based species delimitation
DNA-based species delimitation Phylogenetic species concept based on tree topologies Ø How to set species boundaries? Ø Automatic species delimitation? druhů? DNA barcoding Species boundaries recognized
More informationI L L I N O I S UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN
Introduction Edps/Psych/Stat/ 584 Applied Multivariate Statistics Carolyn J Anderson Department of Educational Psychology I L L I N O I S UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN c Board of Trustees,
More informationChemometrics. Classification of Mycobacteria by HPLC and Pattern Recognition. Application Note. Abstract
12-1214 Chemometrics Application Note Classification of Mycobacteria by HPLC and Pattern Recognition Abstract Mycobacteria include a number of respiratory and non-respiratory pathogens for humans, such
More informationPart 1: Naming the cultivar
REGISTRATION FORM FOR a CULTIVAR NAME of POPULUS L. Sub-Committee for Nomenclature and Registration FAO - International Poplar Commission (appointed in 1958 as the ICRA for the genus Populus) Addresses
More informationAn Introduction to Multivariate Statistical Analysis
An Introduction to Multivariate Statistical Analysis Third Edition T. W. ANDERSON Stanford University Department of Statistics Stanford, CA WILEY- INTERSCIENCE A JOHN WILEY & SONS, INC., PUBLICATION Contents
More informationPhylogenetic analyses. Kirsi Kostamo
Phylogenetic analyses Kirsi Kostamo The aim: To construct a visual representation (a tree) to describe the assumed evolution occurring between and among different groups (individuals, populations, species,
More informationClimatogram Project: Temperature, Rainfall, and Biome Distribution
Name Period Due Date Climatogram Project: Temperature, Rainfall, and Biome Distribution Welcome to your climatogram project. In this project you will investigate the relationship between the amount of
More informationEcosystems Chapter 4. What is an Ecosystem? Section 4-1
Ecosystems Chapter 4 What is an Ecosystem? Section 4-1 Ecosystems Key Idea: An ecosystem includes a community of organisms and their physical environment. A community is a group of various species that
More informationPART II. Physical Landscape Chapters 2 5 CLIMATE CLIMATE STUDYING CLIMATE R E M I N D E R S. PART II: People and their Physical Environment 10/19/2017
R E M I N D E R S Two required essays are due by Nov. 13, 2017. (A third may be used for extra credit in place of a Think Geographically essay.) ESSAY TOPIS (choose any two): ontributions of a noted geographer,
More informationComparative Plant Ecophysiology
Comparative Plant Ecophysiology 2. Plant traits and climate factors that form bases for eco- physiological comparison 3. Life form comparisons of: Stomatal conductance Photosynthesis Xylem Anatomy Leaf
More informationHow can molecular phylogenies illuminate morphological evolution?
How can molecular phylogenies illuminate morphological evolution? 27 October 2016. Joe Felsenstein UNAM How can molecular phylogenies illuminate morphological evolution? p.1/81 Where this lecture fits
More informationPHENETIC STUDIES OF ATROPA SPECIES IN IRAN
PHENETIC STUDIES OF ATROPA SPECIES IN IRAN M. Sheidai, M. Khatamsaz, & M. Goldasteh Sheidai, M., Khatamsaz, M. & Goldasteh, M. 005: Phenetic studies of Atropa species in Iran. -Iran. Journ. Bot. 9(1):
More informationAutomated Plant Identification Using Artificial Neural Networks
Automated Plant Identification Using Artificial Neural Networks Jonathan Y. Clark, David P. A. Corney and H. Lilian Tang Department of Computing, University of Surrey Guildford, Surrey, UK j.y.clark@surrey.ac.uk
More informationAmy Driskell. Laboratories of Analytical Biology National Museum of Natural History Smithsonian Institution, Wash. DC
DNA Barcoding Amy Driskell Laboratories of Analytical Biology National Museum of Natural History Smithsonian Institution, Wash. DC 1 Outline 1. Barcoding in general 2. Uses & Examples 3. Barcoding Bocas
More informationPhylogenetic Trees. What They Are Why We Do It & How To Do It. Presented by Amy Harris Dr Brad Morantz
Phylogenetic Trees What They Are Why We Do It & How To Do It Presented by Amy Harris Dr Brad Morantz Overview What is a phylogenetic tree Why do we do it How do we do it Methods and programs Parallels
More informationInDel 3-5. InDel 8-9. InDel 3-5. InDel 8-9. InDel InDel 8-9
Lecture 5 Alignment I. Introduction. For sequence data, the process of generating an alignment establishes positional homologies; that is, alignment provides the identification of homologous phylogenetic
More informationProbability distributions of monthly-to-annual mean temperature and precipitation in a changing climate
Probability distributions of monthly-to-annual mean temperature and precipitation in a changing climate Jouni Räisänen Department of Physics, University of Helsinki Climate probability distribution of
More informationPlant Systematics. What is Systematics? or Why Study Systematics? Botany 400. What is Systematics or Why Study Systematics?
Plant Systematics Botany 400 http://botany.wisc.edu/courses/botany_400/ What is Systematics? or Why Kenneth J. Sytsma Melody Sain Kelsey Huisman Botany Department University of Wisconsin Pick up course
More informationARNOLD ARBORETUM BULLETIN POPULAR INFORMATION HARVARD UNIVERSITY
ARNOLD ARBORETUM HARVARD UNIVERSITY BULLETIN OF POPULAR INFORMATION SERIES 3. VOL. V JUNE 24, 1931 NO. 10 Botanical Drawings by John Singer Sargent. Through the kindness of his sisters, Miss Emily Sargent
More informationPage 1. Evolutionary Trees. Why build evolutionary tree? Outline
Page Evolutionary Trees Russ. ltman MI S 7 Outline. Why build evolutionary trees?. istance-based vs. character-based methods. istance-based: Ultrametric Trees dditive Trees. haracter-based: Perfect phylogeny
More information