Regulation of Peptide Transport in Escherichia coli: Induction of the trp-linked Operon Encoding the Oligopeptide Permease

Size: px
Start display at page:

Download "Regulation of Peptide Transport in Escherichia coli: Induction of the trp-linked Operon Encoding the Oligopeptide Permease"

Transcription

1 JOURNAL OF BACTERIOLOGY, Feb. 1986, p /86/ $02.00/0 Copyright 1986, American Society for Microbiology Vol. 165, No. 2 Regulation of Peptide Transport in Escherichia coli: Induction of the trp-linked Operon Encoding the Oligopeptide Permease JOHN C. ANDREWS, TIMOTHY C. BLEVINS, AND STEVEN A. SHORT* Department of Microbiology, Wellcome Research Laboratories, Research Triangle Park, North Carolina Received 6 August 1985/Accepted 5 November 1985 Growth of Escherichia coli in medium containing leucine results in increased entry of exogenously supplied tripeptides into the bacterial cell. This leucine-mediated elevation of peptide transport required expression of the trp-linked opp operon and was accompanied by increased sensitivity to toxic tripeptides, by an enhanced capacity to utilize nutritional peptides, and by an increase in both the velocity and apparent steady-state level of L-[U-'4Cjalanyl-L-alanyl-L- alanine accumulation for E. coli grown in leucine-containing medium relative to these parameters of peptide transport measured with bacteria grown in media lacking leucine. Direct measurement of opp operon expression by pulse-labeling experiments demonstrated that growth of E. coli in the presence of leucine resulted in increased synthesis of the oppa-encoded periplasmic binding protein. Gram-negative bacteria such as Escherichia coli and Salmonella typhimurium utilize small oligopeptides as both carbon and nitrogen sources for growth. For these bacteria to grow on oligopeptides in the absence of periplasmic or extracellular peptidases (5, 18), the peptides must penetrate the permeability barriers posed by both the outer and cytoplasmic membranes. Data obtained with E. coli have shown that the composition of the outer membrane channels formed by the OmpF and OmpC porins imparts selectivity to the permeation of peptides through the outer membrane and that an E. coli outer membrane lacking both the ompf and the ompc gene products is peptide impermeable (1). Tripeptide passage through the second permeability barrier, the cytoplasmic membrane, requires the presence of specific, genetically defined transport systems. In E. coli tripeptide transport requires the protein products encoded by the genes of the trp-linked opp operon and the oppe locus (1, 12), whereas in S. typhimurium, tripeptide accumulation is mediated by uptake systems encoded by the opp operon and the tppb locus (6, 9). In both E. coli and S. typhimurium, the trp-linked opp operon is polycistronic with the first operon gene, oppa, encoding a periplasmic binding protein (1, 7, 8). The identity and function of the protein products of the other opp operon genes remain to be clearly defined. In contrast to the similarity found for the oligopeptide permease specified by the trp-linked opp operon of both E. coli and S. typhimurium, not only do the oppe locus of E. coli and the tppb locus of S. typhimurium appear, at present, to be genus specific, but also E. coli OppE- mutants and S. typhimurium TppB- mutants have unique tripeptide transport phenotypes. In E. coli, a mutation in oppe renders the strain resistant to certain toxic tripeptides and unable to utilize others as amino acid sources and influences the transport of tripeptides via the trp-linked system when the tripeptide substrate is present at low extracellular concentrations (1). The S. typhimurium tppb-encoded peptide transport system, on the other hand, lacks specificity with respect to the tripeptides that it will transport and appears to function independently of the trp-linked oligopeptide permease (9). Although E. coli and S. typhimurium are capable of utilizing a wide variety of peptides as growth supplements, * Corresponding author. 428 these enteric bacteria accomplish this common goal somewhat differently through their elaboration of both similar and unique peptide transport systems. Recently, synthesis of the S. typhimurium trp-linked oligopeptide permease was shown to be constitutive, but expression of the second S. typhimurium peptide transport system, the tppb-encoded system, was found to be regulated positively by the product of the ompb locus (previously designated as tppa) and to be inducible by leucine or by anaerobiosis (9). Data obtained in this laboratory from the selection of E. coli peptide transport mutants and from our investigation into the regulation of E. coli peptide transport suggested that expression of the genes encoding the E. coli peptide transport proteins was different from that reported for S. typhimurium (9). The results presented in this study demonstrate that active peptide transport via the E. coli trp-linked oligopeptide permease is regulated. In bacteria growing in minimal medium, synthesis of the peptide transport proteins encoded by the trp-linked opp operon occurs at a basal level, but, upon addition of leucine to the culture, expression of the opp operon-encoded transport system is dramatically increased. Moreover, results obtained with OppE- E. coli strains indicate that the decrease in the rate of peptide translocation produced by an oppe mutation does not result from a reduction in the expression of the trp-linked opp operon. The interpretation of the genetic and biochemical data presented in this communication is consistent with and extended by results obtained from the study of opp-lac operon fusions described in the accompanying paper (2). MATERIALS AND METHODS Bacteria and bacteriophages. The E. coli strains used in this study are listed in Table 1. Media and growth conditions. All E. coli strains were cultured in a minimal medium containing Vogel and Bonner (23) minimal salts, 0.2% glucose, and the appropriate supplements of amino acids and vitamins. Solid media contained 1.5% agar. Top layer agar contained 0.8% agar and 0.8% NaCl. Unless otherwise indicated, leucine was added to the media at a concentration of 50,ug/ml to induce expression of the trp-linked opp operon. Strains containing TnJO were grown on media containing 15,g of tetracycline per ml. Genetic manipulations. Lysates of P1 kc were prepared as described by Rosner (21). Transductions were performed as

2 VOL. 165, 1986 REGULATION OF PEPTIDE TRANSPORT IN E. COLI 429 TABLE 1. E. coli strains Strain Genotype Source or comments SS320 F- lac122 lacz pro-48 met-90 trpa trpr his-85 rpsl azi-9 gyra X- P1S (1) SS3213 As SS320, but opp_la (1) SS3222 AS SS320, but opp-2a (1) SS3233 AS SS320, but opp-3a oppel (1) SS3240 As SS320, but zji-2::tnjo oppel (1) SS3242 AS SS320, but zji-2::tnjo This laboratory SS4200 AS SS4201, but zji-2::tnjo oppel SS P1 (SS3240) SS4201 As W2915, but leu+ W P1(SS320) SS5012 AS SS320, but A(trp-tdk) This laboratory SS5211 AS SS320, but ilv::tnjo SS320 + P1 (GT103) SS5212 AS SS320, but oppel ilv::tnlo From SS3240 cured of TnlO, P1 transduction from GT10 W2915 F- thr-j thi-j proa2 lacyl galk2 mtl-l xyl-j ara-14 supe44 leub6 B. Bachmann GT103 F- thi pro rho-120 lacz::isims319 ilv::tnjo D. Calhoun UT5028 F+ thi serb zji-j::tnjo C. Lark acomplementation studies (1) demonstrated that the opp-j mutation affects expression of the entire trp-linked opp operon, that the opp-2 mutation affects only oppd expression, and that the opp-3 mutation is complemented only by an OppA- F'123 derivative. Thus, the Opp phenotype of a strain having an opp-j mutation is Opp(ABCD)-, that of a strain harboring an opp-2 mutation is Opp(ABC)+D-, and the phenotype of a strain carrying an opp-3 mutation is OppA+(BCD)-. described by Miller (15). The loss of TnJO was selected for as described by Maloy and Nunn (14). Response to toxic or nutritional peptides. The ability of a toxic peptide to inhibit bacterial growth was quantitated by determining the diameter of the inhibitory zone surrounding a filter paper disk saturated with the toxic peptide as described previously (1). The ability of peptides to support growth of an amino acid auxotroph was quantitated by measuring the zone of growth surrounding a disk saturated with 0.1,umol of the nutritional peptide. Transport of radiolabeled Ala3. The accumulation of radiolabeled tri-l-alanine (Ala3) was measured at 37 C as described previously (1). The uptake reaction was initiated by the addition of L-[U-14C]alanyl-L-alanyl-L-alanine ([14C]- Ala3; specific activity, 168 Ci/mol) to a final concentration of 20 p.m and terminated at the times indicated in Fig. 1 by washing the entire reaction mixture onto nitrocellulose membrane filters with 5 ml of 0.1 M LiCl. The filters were dissolved in 5 ml of ScintiVerse II scintillation fluid (Fisher Scientific Co., Pittsburgh, Pa.), and the radioactivity of each sample was determined. Preparation and analysis of osmotic shock fluids. The proteins present in the bacterial periplasmic space were labeled and isolated by osmotic shock as described by Emr and Bassford (4). In these experiments, the synthesis of the maltose-binding protein and the OppA binding protein were induced by the addition of 0.2% maltose and 100,ug of L-leucine per ml, respectively, to the medium. The lyophilized shock fluids were dissolved in Laemmli sample buffer (19), and the trichloroacetic acid-precipitable radioactivity of each extract was determined. Aliquots of each shock fluid sample containing 25,000 dpm of 14C were adjusted to a final volume of 10 pul and loaded onto a sodium dodecyl sulfatepolyacrylamide gel for analysis. Separation of the 14C-labeled proteins extracted by the osmotic shock procedure was performed with 0.75-mm by 15-cm slab gels and the running buffer of Thomas and Kornberg (22). The slab gels consisted of a 14-cm 16.5% separating gel (200:1, acrylamide-bisacrylamide) overlaid with a 1-cm 4.5% stacking gel (36:1, acrylamidebisacrylamide). Electrophoresis of the proteins through the stacking gel was carried out at a constant voltage of 50 V and through the separating gel at a constant power setting of 5 W/gel. After electrophoresis, the gels were soaked in Enlightning (New England Nuclear Corp., Boston, Mass.), dried, and exposed to Kodak XAR5 X-ray film for 16 to 20 h at -70 C. Analytical procedures. The protein concentration of all samples was measured by the method of Lowry et al. (13). Chemicals. Orn3 was obtained from Bachem AG, Bubendorf, Switzerland. Other peptides used in this study were obtained from Bachem AG; Research Plus, Inc., Bayonne, N.J.; Vega Biochemicals, Tuscon, Ariz.; and Bachem Inc., Torrence, Calif. All peptides obtained from commercial sources were analyzed as to their purity before being used in this study. The [14C]Ala3 was synthesized and purified by V. L. Styles and S. A. Short. RESULTS Influence of leucine on the E. coli peptide transport systems. The growth of wild-type E. coli K-12 in minimal media is strongly inhibited by valine-containing tripeptides due to the inhibition of acetohydroxyacid synthase by valine liberated from the transported tripeptide (1, 11). In contrast, the growth of E. coli K-12 strains harboring and oppe mutation is unaffected by the presence of valyl tripeptides in the growth medium (1). This resistance of OppE- strains to tripeptides containing valine results from the inability of these mutants to actively transport the toxic valyl tripeptides (1). These results suggested that OppE- mutants could be selected directly by plating a mutagenized E. coli culture on minimal agar medium containing a valyl tripeptide and leucine. The addition of leucine to the selection medium would prevent or significantly reduce reentry, via the branch chain amino acid transport system (20), of valine that was cleaved intracellularly from the valyl tripeptide and excreted into the medium by OppE+ cells. When selection for OppEmutants was carried out as described above, no mutants were obtained. Therefore, the experiment was reconstructed with the OppE- mutant SS3240 (Table 1). As predicted, growth of this mutant on minimal medium containing Val3 was identical to the growth observed for wild-type E. coli on the same medium lacking Val3. However, when SS3240 was plated on Val3 medium containing leucine, this strain did not grow, suggesting that, under these coditions, Val3 was being concentrated to toxic levels by OppE- cells. That this was indeed the case is demonstrated by the data presented in Table 2. In the absence of leucine, SS3240 was completely resistant to Val3, but, upon addition of leucine to the medium, the Val3 sensitivity of this strain was indistinguish-

3 430 ANDREWS ET AL. J. BACTERIOL. TABLE 2. Influence of leucine on the toxicity of valine-containing peptides" Zone of growth inhibition (mm, diameter) Stiain Opp Phenotype Val-Val-Val Pro-Val-Asp Pro-Val-Gly Val-Asp Val-Gly Pro-Val _ SS320 Wild type SS3213 (ABCD)-E ND ND ND ND ND ND SS3222 (ABC)+D-E ND ND ND ND ND ND SS5012 A(ABCD)E SS3240 (ABCD) + E SS3233 A+(BCD)-E a Sensitivity of each strain to the toxic valyl peptides was determined as described in the text. The - and + symbols below each peptide indicate the absence or presende of 50,ug of L-leucine per ml in the medium. The amount of each peptide tested was 100,ug of Val3 and 50,ug each of Pro-Val-Asp, Pro-Val-Gly, Val-Asp, Val-Gly, and Pro-Val. The numbers represent the diameters of the clear zones surrounding each peptide-containing 6.5-mm disk. A value of 0 indicates that growth was not inhibited by the peptide tested. ND, Not done. able from that observed for the wild-type strain, SS320. The leucine enhancement of growth inhibition produced by valyl tripeptides was not a phenotype unique to SS3240 or E. coli strains harboring an oppel mutation. In the absence of leucine, the growth of SS320 was inhibited by Thr-Val-Leu, Phe-Ser-Val, V41-Gly-Gly, Val-Leu-Ser (data not shown), and Val3, but was absolutely unaffected by Pro-Val-Asp or Pro-Val-Gly (Table 2). Sensitivity of SS320 to these latter two peptides was obtained, however, upon incorporation of leucine into the assay medium (Table 2). The Pro-Val-Asp and Pro-Val-Gly resistance displayed by SS320 in the absence of leucine did not result from a peptidase deficiency, since both Pro-Val-Asp and Pro-Val-Gly satisfy the proline requirement of SS320 in the absence of leucine and since this strain was equally sensitive to Val-Asp, Val-Gly, and Pro- Val in the absence or presence of leucine (Table 2). The differential sensitivity to valyl tripeptides described above for strains SS320 and SS3240 is consistent with the interpretation that the addition of leucine to E. coli resulted in elevated intracellular concentrations of these valyl peptides and thus their toxic hydrolysis product, valine, and that in the absence of leucine the intracellular valine concentration resulting from hydrolysis of Pro-Val-Asp and Pro-Val-Gly in SS320 or Val3 in SS3240 never achieved a toxic level. The influence of leucine on the sensitivity of E. coli to toxic peptides was not limited to tripeptides containing valine. Sensitivity of E. coli strains SS320 (wild-type) and SS3240 (oppe) to Orn3 was also affected by leucine. When assayed over a 20-fold Orn3 concentration range, the zone of growth inhibition produced by each Orn3 concentration was significantly larger in the presence of leucine than in the absence of this amino acid in the assay medium (Table 3). Moreover, by analogy to the results obtained with toxic tripeptides, leucine would be predicted to enhance the growth of E. coli on nutritional tripeptides. The data given in Table 4 for SS3240 (with Lys-His-Lys as a histidine source and with Pro-His-Leu, Pro-His-Phe, and Pro-His-Glu as either proline or histidine sources) and the ability of SS5211 (ilv::tnio, Table 1) to use Pro-Val-Asp or Pro-Val-Gly as valine sources only in the presence of leucine confirm this prediction. The data presented in Tables 2, 3, and 4 thus are probably reflections of the intracellular concentration of exogenously supplied tripeptides and as such support the hypothesis that the addition of leucine to E. coli results in an increase in the transport of extracellular tripeptides into the cell. It should be noted that the response of E. coli to leucine described above was not a property peculiar to strains derived from SS320, since identical results were obtained with the E. coli W2915 derivative strains, SS4200 and SS4201 (Table 1, data not shown). Response of Opp- mutants to leucine. E. coli SS3230 (opp-3 oppe) and its derivatives were found previously to be resistant to all toxic tripeptides and unable to utilize nutritional peptides as amino acid sources when assayed in the absence of leucine (1). The data shown in Tables 2 and 4 confirm this earlier observation and indicate that, even in the presence of leucine, the growth of a strain harboring an opp-3 mutation and an oppe mutation was unaffected by toxic tripeptides and not supported by nutritional peptides. Therefore, the E. coli peptide transport system responsible for the leucine effect documented above is apparently encoded by either the genes of the trp-linked opp operon or the gene(s) of the oppe locus. Since tripeptide accumulation by the OppE- mutant SS3240 was leucine responsive, the oligopeptide permease encoded by the trp-linked opp operon must be the mediator of the leucine effect. Those E. coli strains harboring a mutation in the trp-linked opp operon (SS3213, SS3222) or carrying a deletion of the entire opp operon (SS5012) were resistant to Orn3 (1) and valyl tripeptides except Val3 and unable to utilize n1umerous nutritional peptides as amino acid sources both in the presence and absence of leucine. Confirmation that the TABLE 3. Effect of leucine on Orn3 toxicity' Zone of growth inhibition (mm, diameter) with the following amt of Orn3 on disk (pg) Strain Opp phenotype ~++ + SS320 Wild type SS3240 (ABCD) -+E a Sensitivity of each strain to Orn3 was determined as described in the text. The - and + symbols below each peptide amount indicate the absence or presence of 50 Fg of L-leucine per ml in the medium. The numbers represent the diameters of the clear zones surrounding each peptide-containing 6.5-mm disk. A value of 0 indicates that growth was not inhibited by the peptide tested.

4 VOL. 165, 1986 REGULATION OF PEPTIDE TRANSPORT IN E. COLI 431 TABLE 4. Inducibility of the E. cqli peptide transport systems" Size of growth zone (mm) on: Lys-His- Pro-His- Pro-His- Pro-His- Lys-Ala- Ala-Pro- Met-Met- Met-Leu- Strain Opp phenotype Lys Leu Phe Glu Pro Ala Met Phe _ + _ + _ + _ SS320 Wild type SS3222 (ABC)+D-E SS5012 A(ABCD)E SS3240 (ABCD) + E SS3233 A+(BCD)-E a The ability of each strain to use a tripeptide as the sole source of an essential amino acid was determined as described in Materials and Methods with 0.1 p.jnol of amino acid in peptide linkage applied to each disk. The - and + symbols below each tripeptide indicate the absence or presence of 50 p.g of L-leucine per ml in the mnedium. The numbers represent the diameters of the zones of growth surrounding each tripeptide-saturated disk. A value of 0 indicates that the strain was unable to grow on the tfipeptide applied to the disk. leucine enhancement of tripeptide transport observed in E. coli requires a wild-type trp-linked opp operon was obtained (i) by the selection of Orn3-resistant mutants of SS3240 (oppe) in the presence of leucine, (ii) by transduction of SS3233 (opp-3 oppe) to oppe+ with P1 lysates prepared on either UT5028 (zji-j::tnlo oppe+) or SS3242 (zji-2::tnjo oppe+), and (iii) by determination of the phenotype obtained after introduction of F'123 into SS5012 (AoppABCD). Analysis of the results obtained from these experiments demonstrated that (i) all secondary mutations selected in SS3240 that resulted in leucine-nonresponsive Orn3r Val3r mutants mapped by P1 transduction in the trp-linked opp operon, (ii) all Tcr, OppE+ transductants of SS3233 remained resistant to Orn3, Pro-Val-Asp, and Pro-Val-Gly in the presence or absence of leucine, and (iii) introduction of F-factor F'123, which has been shown to carry the trp-linked opp operon (3, 12), into SS5012 yielded only Orn3-sensitive exconjugants that were more sensitive to Pro-Val-Asp and Pro-Val-Gly in the presence than in the absence of leucine. The results obtained through genetic analysis of the leucine effect complement the phenotypic data described in the preceding section and together suppprt the hypothesis that leucine enhances tripeptide uptake by E. coli and that this enhancement is dependent on the presence of a wild-type trp-linked opp operon. Influence of leucine on ('4C]Ala3 transport. The accumulation of radiolabeled Ala3 by E. coli grown in the absence of leucine has been shown to proceed through the transport system encoded by the trp-linked opp operon and to be influenced by the gene product(s) encoded by the oppe locus (1). In the absence of leucine and at 20 F.M [14C]Ala3, the peptide transport system requiring a functional oppe locus accounted for the majority of the [14C]Ala3 uptake measured with wild-type E. coli SS320 (1). When [14C]Ala3 accumulation was measured with SS320 cells harvested from leucinecontaining medium, the initial rate of [14C]Ala3 uptake was increased ca. fourfold and the apparent steady-state level of tripeptide accumulation was elevated ca. twofold compared with these parameters of Ala3 transport measured with SS320 cells collected from medium lacking leucine (Fig. 1A). Similarily, growth of the OppE- mutant SS3240 (which expresses the trp-liriked opp tripeptide trahsport system) in medium containing leucine yielded cells in which [14C]Ala3 accumulation was significantly elevated relative to the uptake measured for cells of this strain grown in the absence of leucine (Fig. 1B). In control experiments, the transport of serine, glutamine, histidine, and proline was found to be identical for strain SS320 (or SS3240) that had been grown in the absence and presence of leucine (data not shown). Moreover, preincubation of SS320 or SS3240 cells collected from cultures grown in the absence of leucine with leucine in the transport assay mixtures did not result in increased [14C]Ala3 transport as was noted above for cells from leucine-grown cultures. In fact, the levels of [14C]Ala3 uptake obtained after leucine preincubation were indistinguishable from that shown in Fig. 1 for SS320 and SS3240 grown in the absence of leucine. These results indicate that the increased activity of the tripeptide transport systems described for leucine-grown E. coli was specific to peptide accumulation and that this increased transport activity required growth of the bacteria in leucine-containing medium. Regulation of oppa gene expression. If leucine is functioning to enhance peptide transport by elevating expression of the trp-linked opp operon as in7dicated in the preceding sections, then the amount of oppa gene product released by osmotic shock should be greater in the periplasmic protein fraction prepared from leucine-grown E. coli than from cells grown in the absence of leucine. Analysis of the periplasmic proteins labeled and extracted from strains SS320 (wild type), SS3240 (oppe), and SS5012 (AoppABCD) indicated that leucine increased synthesis of the oppa-encoded bind- E E Ua 0 0 E C 0 I- 0. c rx TIME (min) FIG. 1. Influence of leucine on Ala3 transport. The transport of ['4C]Ala3 was measured as described in the text with E. coli strains (A) SS320 (wild type) and (B) SS3240 (oppe). Ala3 accumulation was measured with cell suspensions prepared from cultures grown in the absence of leucine (0) or in the presence of 50,ug of leucine per ml (A).

5 432 ANDREWS ET AL. ing protein (Fig. 2; compare lane A with B and lane D with E). In these experiments, identification of the oppa gene product was based on the fact that strain SS5012 (AoppABCD) (Fig. 2, lane C) failed to synthesize a periplasmic protein having a subunit molecular weight of 56,000 and on the size similarity between the E. coli OppA protein (Fig. 2, band 1) and the S. typhimurium OppA protein (6). The increased synthesis of OppA protein after the addition of leucine to the bacterial culture was not a general, nonspecific phenomenom common to all periplasmic proteins. Synthesis of the periplasmic maltose-binding protein (Fig. 2, band 3) was unaffected by inclusion of leucine in the growth medium (Table 5), whereas synthesis of the LIV-binding protein (Fig. 2, band 2), the product of the livj gene (16), was repressed upon the addition of leucine to the E. coli cultures as has been previously described (17, 19). The magnitude of the leucine-specific increase in OppA protein shown in Fig. 2 for strains SS320 and SS3240 was estimated by using the induced level of maltose-binding protein as an internal standard. The addition of leucine to each of these E. ccli cultures produced a 2.1- to 3.3-fold increase in the amount of OppA protein released by the osmotic shock procedure when compared with the amount of maltose-binding protein present in each periplasmic protein fraction (Table 5). These data also indicate that in the absence of leucine the abundance of the E. coli OppA protein was not significantly greater than the LIV-binding protein (Fig. 2, compare bands 1 and 2 of lanes A and D), and that under inducing conditions the amount of OppA protein synthesized and exported into the bacterial periplasm was comparable to the amount of A B C D E I - v..r 2 3-_-ow..:....:. ;.:3 67k 43k 30k 20k FIG. 2. Periplasmic proteins prepared from E. coli grown in the absence and presence of leucine. The E. coli periplasmic proteins were pulse-labeled with "'C-amino acids, extracted, and analyzed as described in the text. The protein profiles shown in this autoradiogram were obtained with SS320 (wild type) grown and labeled in the (A) absence and (B) presence of leucine, (C) SS5012 (AoppABCD) grown and labeled in the presence of leucine, and SS3240 (oppe) grown and labeled in the (D) absence and (E) presence of leucine. The positions of the E. coli OppA binding protein (1, Mr 56,000), the LIV-binding protein (2, Mr 39,000), and the maltose-binding protein (3, Mr 36,000) are indicated of the left side of this figure. The positions of the molecular weight standards bovine serum albumin (Mr 67,000), ovalbumin (Mr 43,000), carbonic anhydrase (Mr 30,000), and trypsin inhibitor (Mr 20,100), are indicated on the right. TABLE 5. J. B3ACTERIOL. Influence of leucine on the synthesis of the OppA binding proteina Leucine in Expt 1 (dpm) Expt 2 (dpm) Strain medium MBP OppA MBP OppA SS320-4,140 1,665 5,920 2, ,440 4,540 3,840 4,660 SS3240-4,240 1,400 6,080 2, ,600 3,010 4,810 4,550 a Data presented represent the radioactivity of the maltose-binding protein (MBP) and the OppA binding protein determined after solubilization of the area of each gel lane corresponding to these proteins. maltose-binding protein synthesized in the presence of maltose. DISCUSSION Growth of E. coli in medium containing leucine resulted in increased sensitivity to toxic peptides (Tables 2 and 3) as well as stimulating or enabling growth on numerous nutritional tripeptides (Table 4). For leucine to educe these responses with such a wide variety of both toxic and nutritional tripeptides, this amino acid must be affecting a common step in the utilization of tripeptides by E. coli. The biochemical and genetic data presented in this communication demonstrate that growth of E. coli in medium containing leucine results in increased entry of exogenously supplied tripeptides into the bacterial cell and that this leucineinduced increase in tripeptide transport requires expression of the trp-linked opp operon. The biochemical and genetic data presented in this study and in the accompanying communication (2) indicate that leucine is not functioning to induce the synthesis of a new, completely independent peptide transport system similar to the leucine-inducible thymine PP, transport system described in S. typhimurium (9). Rather, the data described in this study of E. coli peptide transport are consistent with the interpretation that growth of E. coli in leucine-containing medium results in increased expression of the trp-linked opp operon. The data obtained from the osmotic shock experiments (Fig. 2 and Table 5) confirm this conclusion and provide a direct demonstration of the leucine-mediated enhancement of opp gene expression. Moreover, the growth results described in Tables 2, 3, and 4 as well as the [14C]Ala3 transport results (Fig. 1) support this interpretation and can be readily understood in terms of an increase in the number of functional opp-encoded transport systems incorporated into the bacterial membrane. Apart from demonstrating the leucine inducibility of peptide transport in E. coli, an examination of both the capacity of each peptide transport mutant to utilize nutritional peptides (Table 4) and the sensitivity or resistance of each mutant to toxic peptides (Tables 2 and 3) has permitted a qualitative definition of substrate preference for the E. coli peptide transport systems. These data indicate that peptides such as Lys-His-Lys, Pro-His-Leu, Pro-His-Phe, Pro-His- Glu, Leu-Ala-Pro (data not shown), and Orn3 are transported predominantly via the system encoded by the trplinked opp operon; that Lys-Ala-Pro, Ala-Pro-Ala, Ala3 (1), and Val3 display a marked preference for the transport system absent in E. coli strains harboring an oppe mutation; and that Met3, Met-Leu-Phe, Met-Ala-Ser (1), Pro3, and Met-Met-Ala (data not shown) appear to lack any transport system preference for their entry into the bacterial cell. This

6 VOL. 165, 1986 qualitative classification of E. coli peptide transport system specificity is in agreement with previous results (1) and provides further evidence suggesting that not all tripeptides enter E. coli by each transport system with an equal efficiency. Previously, data were presented which suggested that in E. coli a relationship exists between mutations mapping at the oppe locus and the transport system specified by the genes of the trp-linked opp operon (1). The data obtained in this study with E. coli SS3240 (oppe) are in agreement with this proposal. Introduction of an oppe mutation into wildtype E. coli resulted in a strain which was unable to actively transport Orn3 to a toxic intracellular concentration (Table 3) and which had lost the ability to utilize oligopeptide permease preferred tripeptides as sources of required amino acids (Table 4) when grown in the absence of leucine. However, when an OppE- mutant such as SS3240 was grown with exogenous leucine, the influence that the oppe mutation had on peptide transport was significantly diminished. Since the genetic and biochemical evidence presented in this study indicate that the leucine responsiveness of E. coli peptide transport requires the presence of a wild-type trp-linked opp operon, then the effect that the oppe mutation has on E. coli peptide transport must result from an alteration in either the activity or the expression of the transport system encoded by the trp-linked opp operon. The oppe mutation does not affect expression of the oppa-encoded periplasmic binding protein (Fig. 2 and Table 5). In fact, the level of oppa gene product synthesis relative to the induced level of maltose-binding protein synthesis for the OppEmutant SS3240 was essentially identical to that found with the wild-type E. coli SS320 when measured with bacteria grown in the absence or presence of leucine. These results have been confirmed and are extended by the data obtained from an examination of opp operon regulation and expression with opp-lac operon fusions described in the accompanying paper (2). Although the data presented in this study have documented that a relationship exists between the gene(s) of the oppe locus and E. coli peptide transport, the identity of the mechanism through which the oppe gene product(s) influences the functioning of the E. coli peptide transport systems remains to be defined. However, one interpretation of the data presently available is that a mutation in the oppe locus significantly impairs the activity (i.e., turnover number or affinity) of the E. coli transport system encoded by the trp-linked opp operon. LITERATURE CITED 1. Andrews, J. C., and S. A. Short Genetic analysis of Escherichia coli oligopeptide transport mutants. J. Bacteriol. 161: Andrews, J. C., and S. A. Short opp-lac operon fusions and transcriptional regulation of the Escherichia coli trp-linked oligopeptide permease. J. Bacteriol. 165: Barak, Z., and C. Gilvarg Triornithine resistant strains of Escherichia coli. Isolation, definition, and genetic studies. J. REGULATION OF PEPTIDE TRANSPORT IN E. COLI 433 Biol. Chem. 249: Emr, S. D., and P. J. Bassford, Jr Localization and processing of outer membrane and periplasmic proteins in Escherichia coli strains harboring export-specific suppressor mutations. J. Biol. Chem. 257: Hermsdorf, C. L., and S. Simmonds Role of peptidases in utilization and transport of peptides by bacteria, p In J. W. Payne (ed.), Microorganisms and nitrogen sources. John Wiley & Sons, Inc., New York. 6. Higgins, C. F., and M. M. Hardie Periplasmic protein associated with the oligopeptide permeases of Salmonella typhimurium and Escherichia coli. J. Bacteriol. 155: Higgins, C. F., M. M. Hardie, D. Jamieson, and L. M. Powell Genetic map of the opp (oligopeptide permease) locus of Salmonella typhimurium. J. Bacteriol. 153: Hogarth, B. G., and C. F. Higgins Genetic organization of the oligopeptide permease (opp) locus of Salmonella typhimurium and Escherichia coli. J. Bacteriol. 153: Jamieson, D., and C. F. Higgins Anaerobic and leucinedependent expression of a peptide transport gene in Salmonella typhimurium. J. Bacteriol. 160: Laemmli, U. K Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227: Leavitt, R. I., and H. E. Umbarger Isoleucine and valine metabolism in Escherichia coli. XI. Valine inhibition of the growth of Escherichia coli K-12. J. Bacteriol. 83: Lenny, A. B., and P. Margolin Locations of the opp and supx genes of Salmonella typhimurium and Escherichia coli. J. Bacteriol. 143: Lowry, 0. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall Protein measurement with the Folin phenol reagent. J. Biol. Chem. 143: Maloy, S. R., and W. D. Nunn Selection for loss of tetracycline resistance by Escherichia coli. J. Bacteriol. 145: Miller, J. H Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. 16. Oxender, D. L., J. J. Anderson, C. J. Daniels, R. Landick, R. P. Gunsalus, G. Zurawski, E. Selker, and C. Yanofsky Structural and functional analysis of cloned DNA containing genes responsible for branched-chain amino acid transport in Escherichia coli. Proc. Natl. Acad. Sci. USA 77: Oxender, D. L., J. J. Anderson, M. M. Mayo, and S. C. Quay Leucine binding protein and regulation of transport in E. coli. J. Supramol. Struct. 6: Payne, J. W., and C. Gilvarg Transport of peptides in bacteria, p In B. P. Rosen (ed.), Bacterial transport. Marcel Dekker, Inc., New York. 19. Penrose, W. R., G. E. Nichoalds, J. R. Piperno, and D. L. Oxender Purification and properties of a leucine-binding protein from Escherichia coli. J. Biol. Chem. 243: Piperno, J. R., and D. L. Oxender Amino acid transport systems in Escherichia coli K12. J. Biol. Chem. 243: Rosner, J. L Formation, induction, and curing of bacteriophage P1 lysogens. Virology 49: Thomas, J. O., and R. D. Kornberg An octamer of histones in chromatin and free in solution. Proc. Natl. Acad. Sci. USA 72: Vogel, H. J., and D. M. Bonner Acetylornithinase of Escherichia coli: partial purification and some properties. J. Biol. Chem. 218:

THE THIRD GENERAL TRANSPORT SYSTEM BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA T YPHIMURI UM KEIKO MATSUBARA, KUNIHARU OHNISHI, AND KAZUYOSHI KIRITANI

THE THIRD GENERAL TRANSPORT SYSTEM BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA T YPHIMURI UM KEIKO MATSUBARA, KUNIHARU OHNISHI, AND KAZUYOSHI KIRITANI J. Gen. Appl. Microbiol., 34, 183-189 (1988) THE THIRD GENERAL TRANSPORT SYSTEM BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA T YPHIMURI UM FOR KEIKO MATSUBARA, KUNIHARU OHNISHI, AND KAZUYOSHI KIRITANI Department

More information

A REGULATORY TRANSPORT MUTANT FOR BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA TYPHIMURIUM KUNIHARU OHNISHI, KEIKO MURATA AND KAZUYOSHI KIRITANI

A REGULATORY TRANSPORT MUTANT FOR BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA TYPHIMURIUM KUNIHARU OHNISHI, KEIKO MURATA AND KAZUYOSHI KIRITANI JAPAN. J. GENETICS Vol. 55, No. 5: 349-359 (1980) A REGULATORY TRANSPORT MUTANT FOR BRANCHED-CHAIN AMINO ACIDS IN SALMONELLA TYPHIMURIUM KUNIHARU OHNISHI, KEIKO MURATA AND KAZUYOSHI KIRITANI Department

More information

Translation. A ribosome, mrna, and trna.

Translation. A ribosome, mrna, and trna. Translation The basic processes of translation are conserved among prokaryotes and eukaryotes. Prokaryotic Translation A ribosome, mrna, and trna. In the initiation of translation in prokaryotes, the Shine-Dalgarno

More information

Regulation of Gene Expression in Bacteria and Their Viruses

Regulation of Gene Expression in Bacteria and Their Viruses 11 Regulation of Gene Expression in Bacteria and Their Viruses WORKING WITH THE FIGURES 1. Compare the structure of IPTG shown in Figure 11-7 with the structure of galactose shown in Figure 11-5. Why is

More information

Introduction. Gene expression is the combined process of :

Introduction. Gene expression is the combined process of : 1 To know and explain: Regulation of Bacterial Gene Expression Constitutive ( house keeping) vs. Controllable genes OPERON structure and its role in gene regulation Regulation of Eukaryotic Gene Expression

More information

Exam I Answer Key: Summer 2006, Semester C

Exam I Answer Key: Summer 2006, Semester C 1. Which of the following tripeptides would migrate most rapidly towards the negative electrode if electrophoresis is carried out at ph 3.0? a. gly-gly-gly b. glu-glu-asp c. lys-glu-lys d. val-asn-lys

More information

Chapter 16 Lecture. Concepts Of Genetics. Tenth Edition. Regulation of Gene Expression in Prokaryotes

Chapter 16 Lecture. Concepts Of Genetics. Tenth Edition. Regulation of Gene Expression in Prokaryotes Chapter 16 Lecture Concepts Of Genetics Tenth Edition Regulation of Gene Expression in Prokaryotes Chapter Contents 16.1 Prokaryotes Regulate Gene Expression in Response to Environmental Conditions 16.2

More information

Functional testing of putative oligopeptide permease (Opp) proteins of Borrelia burgdorferi: a complementation model in opp 3 Escherichia coli

Functional testing of putative oligopeptide permease (Opp) proteins of Borrelia burgdorferi: a complementation model in opp 3 Escherichia coli Biochimica et Biophysica Acta 1499 (2001) 222^231 www.elsevier.com/locate/bba Functional testing of putative oligopeptide permease (Opp) proteins of Borrelia burgdorferi: a complementation model in opp

More information

Transmembrane Domains (TMDs) of ABC transporters

Transmembrane Domains (TMDs) of ABC transporters Transmembrane Domains (TMDs) of ABC transporters Most ABC transporters contain heterodimeric TMDs (e.g. HisMQ, MalFG) TMDs show only limited sequence homology (high diversity) High degree of conservation

More information

CHAPTER 13 PROKARYOTE GENES: E. COLI LAC OPERON

CHAPTER 13 PROKARYOTE GENES: E. COLI LAC OPERON PROKARYOTE GENES: E. COLI LAC OPERON CHAPTER 13 CHAPTER 13 PROKARYOTE GENES: E. COLI LAC OPERON Figure 1. Electron micrograph of growing E. coli. Some show the constriction at the location where daughter

More information

Proteins: Characteristics and Properties of Amino Acids

Proteins: Characteristics and Properties of Amino Acids SBI4U:Biochemistry Macromolecules Eachaminoacidhasatleastoneamineandoneacidfunctionalgroupasthe nameimplies.thedifferentpropertiesresultfromvariationsinthestructuresof differentrgroups.thergroupisoftenreferredtoastheaminoacidsidechain.

More information

Gene regulation I Biochemistry 302. Bob Kelm February 25, 2005

Gene regulation I Biochemistry 302. Bob Kelm February 25, 2005 Gene regulation I Biochemistry 302 Bob Kelm February 25, 2005 Principles of gene regulation (cellular versus molecular level) Extracellular signals Chemical (e.g. hormones, growth factors) Environmental

More information

REVIEW SESSION. Wednesday, September 15 5:30 PM SHANTZ 242 E

REVIEW SESSION. Wednesday, September 15 5:30 PM SHANTZ 242 E REVIEW SESSION Wednesday, September 15 5:30 PM SHANTZ 242 E Gene Regulation Gene Regulation Gene expression can be turned on, turned off, turned up or turned down! For example, as test time approaches,

More information

Translation and Operons

Translation and Operons Translation and Operons You Should Be Able To 1. Describe the three stages translation. including the movement of trna molecules through the ribosome. 2. Compare and contrast the roles of three different

More information

Solutions In each case, the chirality center has the R configuration

Solutions In each case, the chirality center has the R configuration CAPTER 25 669 Solutions 25.1. In each case, the chirality center has the R configuration. C C 2 2 C 3 C(C 3 ) 2 D-Alanine D-Valine 25.2. 2 2 S 2 d) 2 25.3. Pro,, Trp, Tyr, and is, Trp, Tyr, and is Arg,

More information

Energy and Cellular Metabolism

Energy and Cellular Metabolism 1 Chapter 4 About This Chapter Energy and Cellular Metabolism 2 Energy in biological systems Chemical reactions Enzymes Metabolism Figure 4.1 Energy transfer in the environment Table 4.1 Properties of

More information

Any protein that can be labelled by both procedures must be a transmembrane protein.

Any protein that can be labelled by both procedures must be a transmembrane protein. 1. What kind of experimental evidence would indicate that a protein crosses from one side of the membrane to the other? Regions of polypeptide part exposed on the outside of the membrane can be probed

More information

Region of the Salmonella typhimurium Linkage Map

Region of the Salmonella typhimurium Linkage Map JOURNAL OF BACTERIOLOGY, Jan. 1974, p. 94-99 Copyright 0 1974 American Society for Microbiology Vol. 117, No. 1 Printed in U.S.A. Gene Order and Co-Transduction in the leu-ara-fol-pyra Region of the Salmonella

More information

Regulation of Gene Expression at the level of Transcription

Regulation of Gene Expression at the level of Transcription Regulation of Gene Expression at the level of Transcription (examples are mostly bacterial) Diarmaid Hughes ICM/Microbiology VT2009 Regulation of Gene Expression at the level of Transcription (examples

More information

Using Higher Calculus to Study Biologically Important Molecules Julie C. Mitchell

Using Higher Calculus to Study Biologically Important Molecules Julie C. Mitchell Using Higher Calculus to Study Biologically Important Molecules Julie C. Mitchell Mathematics and Biochemistry University of Wisconsin - Madison 0 There Are Many Kinds Of Proteins The word protein comes

More information

Regulation of Methionyl-Transfer Ribonucleic

Regulation of Methionyl-Transfer Ribonucleic JOURNAL OF BACTERIOLOGY, June 1973, p. 1007-1013 Copyright i 1973 American Society for Microbiology Vol. 114, No. 3 Printed in U.S.A. Regulation of Methionyl-Transfer Ribonucleic Acid Synthetase Formation

More information

Welcome to Class 21!

Welcome to Class 21! Welcome to Class 21! Introductory Biochemistry! Lecture 21: Outline and Objectives l Regulation of Gene Expression in Prokaryotes! l transcriptional regulation! l principles! l lac operon! l trp attenuation!

More information

Interactions between Mutations Mecting Ribosome Synthesis in Escherichia coli

Interactions between Mutations Mecting Ribosome Synthesis in Escherichia coli Journal of General Microbiology (1 989, 131, 945-949. Printed in Great Britain 945 Interactions between Mutations Mecting Ribosome Synthesis in Escherichia coli By PETER D. BUTLER, EMILIO CATTANEO AND

More information

Secondary Structure. Bioch/BIMS 503 Lecture 2. Structure and Function of Proteins. Further Reading. Φ, Ψ angles alone determine protein structure

Secondary Structure. Bioch/BIMS 503 Lecture 2. Structure and Function of Proteins. Further Reading. Φ, Ψ angles alone determine protein structure Bioch/BIMS 503 Lecture 2 Structure and Function of Proteins August 28, 2008 Robert Nakamoto rkn3c@virginia.edu 2-0279 Secondary Structure Φ Ψ angles determine protein structure Φ Ψ angles are restricted

More information

Chemistry Chapter 22

Chemistry Chapter 22 hemistry 2100 hapter 22 Proteins Proteins serve many functions, including the following. 1. Structure: ollagen and keratin are the chief constituents of skin, bone, hair, and nails. 2. atalysts: Virtually

More information

Lecture 10: Cyclins, cyclin kinases and cell division

Lecture 10: Cyclins, cyclin kinases and cell division Chem*3560 Lecture 10: Cyclins, cyclin kinases and cell division The eukaryotic cell cycle Actively growing mammalian cells divide roughly every 24 hours, and follow a precise sequence of events know as

More information

7.06 Cell Biology EXAM #3 April 21, 2005

7.06 Cell Biology EXAM #3 April 21, 2005 7.06 Cell Biology EXAM #3 April 21, 2005 This is an open book exam, and you are allowed access to books, a calculator, and notes but not computers or any other types of electronic devices. Please write

More information

Amino Acids and Peptides

Amino Acids and Peptides Amino Acids Amino Acids and Peptides Amino acid a compound that contains both an amino group and a carboxyl group α-amino acid an amino acid in which the amino group is on the carbon adjacent to the carboxyl

More information

3.B.1 Gene Regulation. Gene regulation results in differential gene expression, leading to cell specialization.

3.B.1 Gene Regulation. Gene regulation results in differential gene expression, leading to cell specialization. 3.B.1 Gene Regulation Gene regulation results in differential gene expression, leading to cell specialization. We will focus on gene regulation in prokaryotes first. Gene regulation accounts for some of

More information

Gene regulation II Biochemistry 302. February 27, 2006

Gene regulation II Biochemistry 302. February 27, 2006 Gene regulation II Biochemistry 302 February 27, 2006 Molecular basis of inhibition of RNAP by Lac repressor 35 promoter site 10 promoter site CRP/DNA complex 60 Lewis, M. et al. (1996) Science 271:1247

More information

REGULATION OF GENE EXPRESSION. Bacterial Genetics Lac and Trp Operon

REGULATION OF GENE EXPRESSION. Bacterial Genetics Lac and Trp Operon REGULATION OF GENE EXPRESSION Bacterial Genetics Lac and Trp Operon Levels of Metabolic Control The amount of cellular products can be controlled by regulating: Enzyme activity: alters protein function

More information

Regulation of Gene Expression

Regulation of Gene Expression Chapter 18 Regulation of Gene Expression Edited by Shawn Lester PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley

More information

Saccharomyces fragilis

Saccharomyces fragilis JOURNAL OF BACTERIOLOGY, July 1973, p. 5-56 Copyright 1973 American Society for Microbiology Vol. 115, No. 1 Printed in U.S.A. Repression of In Vivo Synthesis of the Mitochondrial Elongation Factors T

More information

PROTEIN SYNTHESIS INTRO

PROTEIN SYNTHESIS INTRO MR. POMERANTZ Page 1 of 6 Protein synthesis Intro. Use the text book to help properly answer the following questions 1. RNA differs from DNA in that RNA a. is single-stranded. c. contains the nitrogen

More information

Newly made RNA is called primary transcript and is modified in three ways before leaving the nucleus:

Newly made RNA is called primary transcript and is modified in three ways before leaving the nucleus: m Eukaryotic mrna processing Newly made RNA is called primary transcript and is modified in three ways before leaving the nucleus: Cap structure a modified guanine base is added to the 5 end. Poly-A tail

More information

GENE REGULATION AND PROBLEMS OF DEVELOPMENT

GENE REGULATION AND PROBLEMS OF DEVELOPMENT GENE REGULATION AND PROBLEMS OF DEVELOPMENT By Surinder Kaur DIET Ropar Surinder_1998@ yahoo.in Mob No 9988530775 GENE REGULATION Gene is a segment of DNA that codes for a unit of function (polypeptide,

More information

Translation - Prokaryotes

Translation - Prokaryotes 1 Translation - Prokaryotes Shine-Dalgarno (SD) Sequence rrna 3 -GAUACCAUCCUCCUUA-5 mrna...ggagg..(5-7bp)...aug Influences: Secondary structure!! SD and AUG in unstructured region Start AUG 91% GUG 8 UUG

More information

32 Gene regulation, continued Lecture Outline 11/21/05

32 Gene regulation, continued Lecture Outline 11/21/05 32 Gene regulation, continued Lecture Outline 11/21/05 Review the operon concept Repressible operons (e.g. trp) Inducible operons (e.g. lac) Positive regulation of lac () Practice applying the operon concept

More information

RNA Synthesis and Processing

RNA Synthesis and Processing RNA Synthesis and Processing Introduction Regulation of gene expression allows cells to adapt to environmental changes and is responsible for the distinct activities of the differentiated cell types that

More information

Lecture 15: Realities of Genome Assembly Protein Sequencing

Lecture 15: Realities of Genome Assembly Protein Sequencing Lecture 15: Realities of Genome Assembly Protein Sequencing Study Chapter 8.10-8.15 1 Euler s Theorems A graph is balanced if for every vertex the number of incoming edges equals to the number of outgoing

More information

UNIT TWELVE. a, I _,o "' I I I. I I.P. l'o. H-c-c. I ~o I ~ I / H HI oh H...- I II I II 'oh. HO\HO~ I "-oh

UNIT TWELVE. a, I _,o ' I I I. I I.P. l'o. H-c-c. I ~o I ~ I / H HI oh H...- I II I II 'oh. HO\HO~ I -oh UNT TWELVE PROTENS : PEPTDE BONDNG AND POLYPEPTDES 12 CONCEPTS Many proteins are important in biological structure-for example, the keratin of hair, collagen of skin and leather, and fibroin of silk. Other

More information

Helical Macrofiber Formation in Bacillus subtilis: Inhibition by Penicillin G

Helical Macrofiber Formation in Bacillus subtilis: Inhibition by Penicillin G JOURNAL OF BACTERIOLOGY, June 1984, p. 1182-1187 0021-9193/84/061182-06$02.00/0 Copyright C 1984, American Society for Microbiology Vol. 158, No. 3 Helical Macrofiber Formation in Bacillus subtilis: Inhibition

More information

Molecular Biology, Genetic Engineering & Biotechnology Operons ???

Molecular Biology, Genetic Engineering & Biotechnology Operons ??? 1 Description of Module Subject Name?? Paper Name Module Name/Title XV- 04: 2 OPERONS OBJECTIVES To understand how gene is expressed and regulated in prokaryotic cell To understand the regulation of Lactose

More information

Sites Within Gene lacz of Escherichia coli for Formation of Active Hybrid f?-galactosidase Molecules

Sites Within Gene lacz of Escherichia coli for Formation of Active Hybrid f?-galactosidase Molecules JOURNAL OF BACTERIOLOGY, July 1979, p. 13-18 Vol. 139, No. 1 0021-9193/79/07-0013/06$02.00/0 Sites Within Gene lacz of Escherichia coli for Formation of Active Hybrid f?-galactosidase Molecules EDITH BRICKMAN,

More information

C CH 3 N C COOH. Write the structural formulas of all of the dipeptides that they could form with each other.

C CH 3 N C COOH. Write the structural formulas of all of the dipeptides that they could form with each other. hapter 25 Biochemistry oncept heck 25.1 Two common amino acids are 3 2 N alanine 3 2 N threonine Write the structural formulas of all of the dipeptides that they could form with each other. The carboxyl

More information

Viewing and Analyzing Proteins, Ligands and their Complexes 2

Viewing and Analyzing Proteins, Ligands and their Complexes 2 2 Viewing and Analyzing Proteins, Ligands and their Complexes 2 Overview Viewing the accessible surface Analyzing the properties of proteins containing thousands of atoms is best accomplished by representing

More information

EFFECT OF ph AND AMMONIUM IONS ON THE PERMEABILITY

EFFECT OF ph AND AMMONIUM IONS ON THE PERMEABILITY EFFECT OF ph AND AMMONIUM IONS ON THE PERMEABILITY OF BACILLUS PASTEURII W. R. WILEY AND J. L. STOKES Department of Bacteriology and Public Health, Washington State University, Pullman, Washington ABSTRACT

More information

CHAPTER : Prokaryotic Genetics

CHAPTER : Prokaryotic Genetics CHAPTER 13.3 13.5: Prokaryotic Genetics 1. Most bacteria are not pathogenic. Identify several important roles they play in the ecosystem and human culture. 2. How do variations arise in bacteria considering

More information

Properties of amino acids in proteins

Properties of amino acids in proteins Properties of amino acids in proteins one of the primary roles of DNA (but not the only one!) is to code for proteins A typical bacterium builds thousands types of proteins, all from ~20 amino acids repeated

More information

Repellent Taxis in Response to Nickel Ion Requires neither Ni 2 Transport nor the Periplasmic NikA Binding Protein

Repellent Taxis in Response to Nickel Ion Requires neither Ni 2 Transport nor the Periplasmic NikA Binding Protein JOURNAL OF BACTERIOLOGY, May 2010, p. 2633 2637 Vol. 192, No. 10 0021-9193/10/$12.00 doi:10.1128/jb.00854-09 Copyright 2010, American Society for Microbiology. All Rights Reserved. Repellent Taxis in Response

More information

Role of Membrane Potential in Protein Folding and Domain Formation During Secretion in Escherichia coli

Role of Membrane Potential in Protein Folding and Domain Formation During Secretion in Escherichia coli Journal of Cellular Biochemistry 24:345-356 (l984) Protein Transport and Secretion 279-290 Role of Membrane Potential in Protein Folding and Domain Formation During Secretion in Escherichia coli Bruce

More information

Initiation of translation in eukaryotic cells:connecting the head and tail

Initiation of translation in eukaryotic cells:connecting the head and tail Initiation of translation in eukaryotic cells:connecting the head and tail GCCRCCAUGG 1: Multiple initiation factors with distinct biochemical roles (linking, tethering, recruiting, and scanning) 2: 5

More information

Membrane Potential. secretion of other secretory proteins is due to the mutant protein blocking these hypothetical export sites.

Membrane Potential. secretion of other secretory proteins is due to the mutant protein blocking these hypothetical export sites. JOURNAL OF BACTERIOLOGY, May 1988, p. 2051-2055 0021-9193/88/052051-05$02.00/0 Copyright C) 1988, American Society for Microbiology Vol. 170, No. 5 Synthesis of an Escherichia coli Protein Carrying a Signal

More information

Topic 4 - #14 The Lactose Operon

Topic 4 - #14 The Lactose Operon Topic 4 - #14 The Lactose Operon The Lactose Operon The lactose operon is an operon which is responsible for the transport and metabolism of the sugar lactose in E. coli. - Lactose is one of many organic

More information

Name Period The Control of Gene Expression in Prokaryotes Notes

Name Period The Control of Gene Expression in Prokaryotes Notes Bacterial DNA contains genes that encode for many different proteins (enzymes) so that many processes have the ability to occur -not all processes are carried out at any one time -what allows expression

More information

Dynamic regulation of the tryptophan operon: A modeling study and comparison with experimental data

Dynamic regulation of the tryptophan operon: A modeling study and comparison with experimental data Dynamic regulation of the tryptophan operon: A modeling study and comparison with experimental data Moisés Santillán* and Michael C. Mackey Department of Physiology and Centre for Nonlinear Dynamics, McGill

More information

Uptake of Adenosine 5'-Monophosphate by Escherichia coli

Uptake of Adenosine 5'-Monophosphate by Escherichia coli JOURNAL OF BACTERIOLoGY, Feb. 1975, p. 41-45 Copyright 1975 American Society for Microbiology Vol. 11, No. Printed in U.S.A. Uptake of Adenosine 5'-Monophosphate by Escherichia coli EZRA YAGIL* AND IFOR

More information

Analysis of Escherichia coli amino acid transporters

Analysis of Escherichia coli amino acid transporters Ph.D thesis Analysis of Escherichia coli amino acid transporters Presented by Attila Szvetnik Supervisor: Dr. Miklós Kálmán Biology Ph.D School University of Szeged Bay Zoltán Foundation for Applied Research

More information

7.05 Spring 2004 February 27, Recitation #2

7.05 Spring 2004 February 27, Recitation #2 Recitation #2 Contact Information TA: Victor Sai Recitation: Friday, 3-4pm, 2-132 E-mail: sai@mit.edu ffice ours: Friday, 4-5pm, 2-132 Unit 1 Schedule Recitation/Exam Date Lectures covered Recitation #2

More information

Big Idea 3: Living systems store, retrieve, transmit and respond to information essential to life processes. Tuesday, December 27, 16

Big Idea 3: Living systems store, retrieve, transmit and respond to information essential to life processes. Tuesday, December 27, 16 Big Idea 3: Living systems store, retrieve, transmit and respond to information essential to life processes. Enduring understanding 3.B: Expression of genetic information involves cellular and molecular

More information

A Plausible Model Correlates Prebiotic Peptide Synthesis with. Primordial Genetic Code

A Plausible Model Correlates Prebiotic Peptide Synthesis with. Primordial Genetic Code Electronic Supplementary Material (ESI) for ChemComm. This journal is The Royal Society of Chemistry 2018 A Plausible Model Correlates Prebiotic Peptide Synthesis with Primordial Genetic Code Jianxi Ying,

More information

Transcarbamylase in Salmonella typhimurium

Transcarbamylase in Salmonella typhimurium JOURNAL oi BACTERIOLOGY, Apr. 1972, p. 66-70 Copyright i 1972 American Society for Microbiology Vol. 110, No. 1 Printed in U.S.A. Structural Genes for Ornithine Transcarbamylase in Salmonella typhimurium

More information

Regulation of Gene Expression

Regulation of Gene Expression Chapter 18 Regulation of Gene Expression PowerPoint Lecture Presentations for Biology Eighth Edition Neil Campbell and Jane Reece Lectures by Chris Romero, updated by Erin Barley with contributions from

More information

Advanced Topics in RNA and DNA. DNA Microarrays Aptamers

Advanced Topics in RNA and DNA. DNA Microarrays Aptamers Quiz 1 Advanced Topics in RNA and DNA DNA Microarrays Aptamers 2 Quantifying mrna levels to asses protein expression 3 The DNA Microarray Experiment 4 Application of DNA Microarrays 5 Some applications

More information

A) at equilibrium B) endergonic C) endothermic D) exergonic E) exothermic.

A) at equilibrium B) endergonic C) endothermic D) exergonic E) exothermic. CHEM 2770: Elements of Biochemistry Mid Term EXAMINATION VERSION A Date: October 29, 2014 Instructor: H. Perreault Location: 172 Schultz Time: 4 or 6 pm. Duration: 1 hour Instructions Please mark the Answer

More information

Biochemistry Quiz Review 1I. 1. Of the 20 standard amino acids, only is not optically active. The reason is that its side chain.

Biochemistry Quiz Review 1I. 1. Of the 20 standard amino acids, only is not optically active. The reason is that its side chain. Biochemistry Quiz Review 1I A general note: Short answer questions are just that, short. Writing a paragraph filled with every term you can remember from class won t improve your answer just answer clearly,

More information

2. Yeast two-hybrid system

2. Yeast two-hybrid system 2. Yeast two-hybrid system I. Process workflow a. Mating of haploid two-hybrid strains on YPD plates b. Replica-plating of diploids on selective plates c. Two-hydrid experiment plating on selective plates

More information

Chapter 12: Intracellular sorting

Chapter 12: Intracellular sorting Chapter 12: Intracellular sorting Principles of intracellular sorting Principles of intracellular sorting Cells have many distinct compartments (What are they? What do they do?) Specific mechanisms are

More information

Gene regulation II Biochemistry 302. Bob Kelm February 28, 2005

Gene regulation II Biochemistry 302. Bob Kelm February 28, 2005 Gene regulation II Biochemistry 302 Bob Kelm February 28, 2005 Catabolic operons: Regulation by multiple signals targeting different TFs Catabolite repression: Activity of lac operon is restricted when

More information

Supporting Information

Supporting Information Supporting Information López et al. 10.1073/pnas.0810940106 1. Ivey DM, et al. (1993) Cloning and characterization of a putative Ca2 /H antiporter gene from Escherichia coli upon functional complementation

More information

Dental Biochemistry EXAM I

Dental Biochemistry EXAM I Dental Biochemistry EXAM I August 29, 2005 In the reaction below: CH 3 -CH 2 OH -~ ethanol CH 3 -CHO acetaldehyde A. acetoacetate is being produced B. ethanol is being oxidized to acetaldehyde C. acetaldehyde

More information

GENES AND CHROMOSOMES III. Lecture 5. Biology Department Concordia University. Dr. S. Azam BIOL 266/

GENES AND CHROMOSOMES III. Lecture 5. Biology Department Concordia University. Dr. S. Azam BIOL 266/ GENES AND CHROMOSOMES III Lecture 5 BIOL 266/4 2014-15 Dr. S. Azam Biology Department Concordia University CELL NUCLEUS AND THE CONTROL OF GENE EXPRESSION OPERONS Introduction All cells in a multi-cellular

More information

4. Why not make all enzymes all the time (even if not needed)? Enzyme synthesis uses a lot of energy.

4. Why not make all enzymes all the time (even if not needed)? Enzyme synthesis uses a lot of energy. 1 C2005/F2401 '10-- Lecture 15 -- Last Edited: 11/02/10 01:58 PM Copyright 2010 Deborah Mowshowitz and Lawrence Chasin Department of Biological Sciences Columbia University New York, NY. Handouts: 15A

More information

Genetic Modifiers of the Phenotypic Level of Deoxyribonucleic Acid-Conferred Novobiocin Resistance in Haemophilus

Genetic Modifiers of the Phenotypic Level of Deoxyribonucleic Acid-Conferred Novobiocin Resistance in Haemophilus JOURNAL OF BACTERIOLOGY, Nov., 1966 Vol. 92, NO. 5 Copyright @ 1966 American Society for Microbiology Printed in U.S.A. Genetic Modifiers of the Phenotypic Level of Deoxyribonucleic Acid-Conferred Novobiocin

More information

Supporting Information

Supporting Information Supporting Information Sana et al. 10.1073/pnas.1608858113 Fig. S1. Representation of the SPI-6 type VI secretion system. (A) Representation of the SPI-6 genetic locus starting at STM0266 and ending at

More information

Importance of Protein sorting. A clue from plastid development

Importance of Protein sorting. A clue from plastid development Importance of Protein sorting Cell organization depend on sorting proteins to their right destination. Cell functions depend on sorting proteins to their right destination. Examples: A. Energy production

More information

SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis):

SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis): SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis): Aim: SDS-PAGE (Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis) is one of the common methods used in the molecular biology

More information

Importance of Glutathione for Growth and Survival of Escherichia coli Cells: Detoxification of Methylglyoxal and Maintenance of Intracellular K

Importance of Glutathione for Growth and Survival of Escherichia coli Cells: Detoxification of Methylglyoxal and Maintenance of Intracellular K JOURNAL OF BACTERIOLOGY, Aug. 1998, p. 4314 4318 Vol. 180, No. 16 0021-9193/98/$04.00 0 Copyright 1998, American Society for Microbiology. All Rights Reserved. Importance of Glutathione for Growth and

More information

Membrane proteins Porins: FadL. Oriol Solà, Dimitri Ivancic, Daniel Folch, Marc Olivella

Membrane proteins Porins: FadL. Oriol Solà, Dimitri Ivancic, Daniel Folch, Marc Olivella Membrane proteins Porins: FadL Oriol Solà, Dimitri Ivancic, Daniel Folch, Marc Olivella INDEX 1. INTRODUCTION TO MEMBRANE PROTEINS 2. FADL: OUTER MEMBRANE TRANSPORT PROTEIN 3. MAIN FEATURES OF FADL STRUCTURE

More information

Supplementary Figure 3 a. Structural comparison between the two determined structures for the IL 23:MA12 complex. The overall RMSD between the two

Supplementary Figure 3 a. Structural comparison between the two determined structures for the IL 23:MA12 complex. The overall RMSD between the two Supplementary Figure 1. Biopanningg and clone enrichment of Alphabody binders against human IL 23. Positive clones in i phage ELISA with optical density (OD) 3 times higher than background are shown for

More information

Advanced Higher Biology. Unit 1- Cells and Proteins 2c) Membrane Proteins

Advanced Higher Biology. Unit 1- Cells and Proteins 2c) Membrane Proteins Advanced Higher Biology Unit 1- Cells and Proteins 2c) Membrane Proteins Membrane Structure Phospholipid bilayer Transmembrane protein Integral protein Movement of Molecules Across Membranes Phospholipid

More information

Escherichia coli. stream from the narghji operon (16). Noji et al. (12) have. sequenced this region of the chromosome and found that the

Escherichia coli. stream from the narghji operon (16). Noji et al. (12) have. sequenced this region of the chromosome and found that the JOURNAL OF BACTERIOLOGY, June 1991, p. 333-331 21-9193/91/11333-8$2./ Copyright 1991, American Society for Microbiology Vol. 173, No. 11 NarK Enhances Nitrate Uptake and Nitrite Excretion in Escherichia

More information

NMR study of complexes between low molecular mass inhibitors and the West Nile virus NS2B-NS3 protease

NMR study of complexes between low molecular mass inhibitors and the West Nile virus NS2B-NS3 protease University of Wollongong Research Online Faculty of Science - Papers (Archive) Faculty of Science, Medicine and Health 2009 NMR study of complexes between low molecular mass inhibitors and the West Nile

More information

THE UNIVERSITY OF MANITOBA. PAPER NO: _1_ LOCATION: 173 Robert Schultz Theatre PAGE NO: 1 of 5 DEPARTMENT & COURSE NO: CHEM / MBIO 2770 TIME: 1 HOUR

THE UNIVERSITY OF MANITOBA. PAPER NO: _1_ LOCATION: 173 Robert Schultz Theatre PAGE NO: 1 of 5 DEPARTMENT & COURSE NO: CHEM / MBIO 2770 TIME: 1 HOUR THE UNIVERSITY OF MANITOBA 1 November 1, 2016 Mid-Term EXAMINATION PAPER NO: _1_ LOCATION: 173 Robert Schultz Theatre PAGE NO: 1 of 5 DEPARTMENT & COURSE NO: CHEM / MBIO 2770 TIME: 1 HOUR EXAMINATION:

More information

Repression Is Relieved l3efore Attenuation in the trp Operon of

Repression Is Relieved l3efore Attenuation in the trp Operon of JOURNAL OF BACTERIOLOGY, June 1984, p. 1018-1024 0021-9193/84/061018-07$02.00/0 Copyright 1984, American Society for Microbiology Vol. 158, No. 3 Repression Is Relieved l3efore Attenuation in the trp Operon

More information

The Gene The gene; Genes Genes Allele;

The Gene The gene; Genes Genes Allele; Gene, genetic code and regulation of the gene expression, Regulating the Metabolism, The Lac- Operon system,catabolic repression, The Trp Operon system: regulating the biosynthesis of the tryptophan. Mitesh

More information

EXCHANGE OF GENETIC MATERIAL BETWEEN SALMONELLA TYPHIMURIUM AND ESCHERICHIA COLI K-12

EXCHANGE OF GENETIC MATERIAL BETWEEN SALMONELLA TYPHIMURIUM AND ESCHERICHIA COLI K-12 EXCHANGE OF GENETIC MATERIAL BETWEEN SALMONELLA TYPHIMURIUM AND ESCHERICHIA COLI K-12 TADASHI MIYAKEl Curnegie Institution of Washington, Depmtment of Genetics, Cold Spring Harbor, New York Received April

More information

Read more about Pauling and more scientists at: Profiles in Science, The National Library of Medicine, profiles.nlm.nih.gov

Read more about Pauling and more scientists at: Profiles in Science, The National Library of Medicine, profiles.nlm.nih.gov 2018 Biochemistry 110 California Institute of Technology Lecture 2: Principles of Protein Structure Linus Pauling (1901-1994) began his studies at Caltech in 1922 and was directed by Arthur Amos oyes to

More information

Mutants of Salmonella typhimurium Able to

Mutants of Salmonella typhimurium Able to JOURNAL OF BACTERIOLOGY, Jan. 1971, p. 28-37 Vol. 105, No. I Copyright c) 1971 American Society for Microbiology Printed in U.S.A. Mutants of Salmonella typhimurium Able to Utilize D-Histidine as a Source

More information

Microbial Genetics, Mutation and Repair. 2. State the function of Rec A proteins in homologous genetic recombination.

Microbial Genetics, Mutation and Repair. 2. State the function of Rec A proteins in homologous genetic recombination. Answer the following questions 1. Define genetic recombination. Microbial Genetics, Mutation and Repair 2. State the function of Rec A proteins in homologous genetic recombination. 3. List 3 types of bacterial

More information

Ch. 18 Regula'on of Gene Expression BIOL 222

Ch. 18 Regula'on of Gene Expression BIOL 222 Ch. 18 Regula'on of Gene Expression BIOL 222 Overview: Conduc'ng the Gene'c Orchestra Prokaryotes and eukaryotes alter gene expression in response to their changing environment In mul@cellular eukaryotes

More information

Advanced Certificate in Principles in Protein Structure. You will be given a start time with your exam instructions

Advanced Certificate in Principles in Protein Structure. You will be given a start time with your exam instructions BIRKBECK COLLEGE (University of London) Advanced Certificate in Principles in Protein Structure MSc Structural Molecular Biology Date: Thursday, 1st September 2011 Time: 3 hours You will be given a start

More information

K. TEDIN* AND F. NOREL Unité de Génétique des Bactéries Intracellulaires, Institut Pasteur, F Paris Cedex 15, France

K. TEDIN* AND F. NOREL Unité de Génétique des Bactéries Intracellulaires, Institut Pasteur, F Paris Cedex 15, France JOURNAL OF BACTERIOLOGY, Nov. 2001, p. 6184 6196 Vol. 183, No. 21 0021-9193/01/$04.00 0 DOI: 10.1128/JB.183.21.6184 6196.2001 Copyright 2001, American Society for Microbiology. All Rights Reserved. Comparison

More information

Chapter 15 Active Reading Guide Regulation of Gene Expression

Chapter 15 Active Reading Guide Regulation of Gene Expression Name: AP Biology Mr. Croft Chapter 15 Active Reading Guide Regulation of Gene Expression The overview for Chapter 15 introduces the idea that while all cells of an organism have all genes in the genome,

More information

Chapter 18: Control of Gene Expression

Chapter 18: Control of Gene Expression Chapter 18: Control of Gene Expression 海洋生物研究所 曾令銘 海事大樓 426 室分機 : 5326 Differential Expression of Genes Prokaryotes and eukaryotes precisely regulate gene expression in response to environmental conditions

More information

Packing of Secondary Structures

Packing of Secondary Structures 7.88 Lecture Notes - 4 7.24/7.88J/5.48J The Protein Folding and Human Disease Professor Gossard Retrieving, Viewing Protein Structures from the Protein Data Base Helix helix packing Packing of Secondary

More information

12 Regulation of Gene Expression

12 Regulation of Gene Expression FIND HP TO ox 12.1 7 1 Helix 1 12 Helix 2: recognition 20 mino acids Helix 1 1 2 3 4 5 6 7 Turn 8 9 10 11 Helix 2 12 13 14 15 16 17 18 19 20 Helix 1 Helix 2 FIND HP TO Figure 12.1 Merodiploid Phenotype

More information

Interdomain loop mutation Asp190Cys of the tetracycline efflux transporter TetA(B) decreases affinity for substrate ACCEPTED

Interdomain loop mutation Asp190Cys of the tetracycline efflux transporter TetA(B) decreases affinity for substrate ACCEPTED AAC Accepts, published online ahead of print on 21 May 2007 Antimicrob. Agents Chemother. doi:10.1128/aac.00357-07 Copyright 2007, American Society for Microbiology and/or the Listed Authors/Institutions.

More information

Inhibition of S532C by MTSET at intracellular ph 6.8 indicates accessibility in the closed

Inhibition of S532C by MTSET at intracellular ph 6.8 indicates accessibility in the closed Supplementary Text Inhibition of S532C by MTSET at intracellular ph 6.8 indicates accessibility in the closed state It is difficult to examine accessibility of cysteine-substituted mutants in the fully

More information

Introduction. Global challenge of energy supply CO 2 output Radioactive waste Inefficient storage in batteries

Introduction. Global challenge of energy supply CO 2 output Radioactive waste Inefficient storage in batteries Introduction Global challenge of energy supply CO 2 output Radioactive waste Inefficient storage in batteries Limited resources Toxic waste Charging time 2 Fuel Cells H 2 + Anode Cathode + + + + + - O

More information