Department of Biochemistry, College of Science, King Saud University, P.O. Box: 2455, Riyadh 11451, Saudi Arabia

Size: px
Start display at page:

Download "Department of Biochemistry, College of Science, King Saud University, P.O. Box: 2455, Riyadh 11451, Saudi Arabia"

Transcription

1 Vol. 43, No. I, September 1997 BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL Pages EFFECT OF MALATHION ON KINETIC PARAMETERS OF ACETYLCHOLINESTERASE (EC )IN VITRO MOHAMMAD AMJAD KAMAL Department of Biochemistry, College of Science, King Saud University, P.O. Box: 2455, Riyadh 11451, Saudi Arabia Received April l, 1997 Received alter revision May 28, 1997 SUMMARY Kinetic analysis of the interaction of malathion with camel erythrocyte acetylcholinesterase was investigated in the present study. The Michaelis-Menten constant (Kin) for the hydrolysis of acetylthiocholine iodide (ASCh) was found to be ~tm and the Vm, was gmol/min/mg protein. The Kmapp and V... pp were both decreased by increased malathion concentration. Dixon as well as Lineweaver-Burk plots and their secondary replots indicated that the nature of the inhibition was of the pure uncompetitive type with K~ value estimated as ppm. The Kiapp decreased while gmaxiap p increased by an increased concentration in ASCh. Key words: Acetylcholinesterase; malathion; inhibition; erythrocyte; kinetics INTRODUCTION Generally, acetylcholinesterase (ACHE; EC ) is an externally oriented, membranebound and highly efficient hydrolase enzyme which terminates the action of neurotransmitter acetylcholine (ACh) after its release at cholinergic synapses in the central and peripheral nervous systems, in this way allowing precise temporal control of muscle contraction [1]. It is a target enzyme for a variety of pharmacological agents, insecticides in widespread use, and nerve gases. The AChE occurs in erythrocytes as well as in neurons and is reported to be similar structurally and enzymically to the brain enzyme [2]. The erythrocyte AChE provides a readily available source of the enzyme to act as a model for studying the biochemical mechanisms by which inhibitors of this enzyme act [3-6] /97/ /0 Copyright by Academic Press Australia. All rights af reproduction in any farm reserved.

2 Vol. 43, No. 1, ] 997 BIOCHEMISTRYond MOLECULAR BIOLOGY INTERNATIONAL The AChE is a very stable enzyme due to conformational plasticity of its active site [7]. In vivo, it is polymorphic in nature, consists of globular catalytic subunits [8]. in case of the dimer, it consists of two subunits, catalytic and regulatory subunits that have masses of 75 kd [7]. The sizes of the two subtmits of the AChE axe identical and these are linked with each other covalently through disulphide bridges. There are five domains in the AChE molecule: (1) an anionic locus, which is used for binding the substrate due to possessing a choline-binding pocket; (2) an esteratic locus, comprised of the active site serine and histidine that are involved in catalysis; (3) a hydrophobic region that is contiguous with or near the esteratic and anionic loci and that is important in binding aryl substrates and (hydrophobic) active site ligands (aromatic cations); (4) an allosteric site, located in the regulatory subunit of the ACHE, that is capable of binding cationic ligands such as gallamine, d- tubocurarine, decamethonium, noncompetitive, uncompetitive and mixed type inhibitors. When ligands bind with this site, t]mquently conformation of the active site is altered. Due to this allosteric site, complex reaction dynamics and active site conformation dynamics take place which are hallmarks of this enzyme. It involve in the regulation of the AChE activity by ligand binding with it. The one characteristic property of AChE is that inhibition by high concentration of substrate is well established and it is suggested that the peripheral anionic site is involved in this type of the inhibition [7-11]; (5) an acidic site of the active site of AChE [12]. These five important points are illustrated in figure 1. Inhibition studies can be used to determine the nature of the binding site of enzymes and are helpful in understanding the enzyme's catalytic characteristics. Moreover, in some cases the inhibition study is beneficial in therapy of some disorders, e.g., slow reversible inhibitors of AChE are used as a pretreatment drug for nerve-agent poisoning [ 13] and for the treatment of Alzheimer's disease [14], glaucoma and myasthenia gravis [15]. Malathion has been used as a pesticide since 1980, due to its low toxicity to humans [7]. The aim of the present investigation is to study the interaction of malathion with a mammalian source of AChE which is very common in Gulf countries, i.e. camel erythrocyte membrane bound AChE to provide some insight in its mechanism of action as well as its binding with the domains of ACHE. MATERIALS AND METHODS Materials: All reagents were of analytical grade. Acetylthiocholine (used as substrate, ASCh) and 5,5'-dithio-bis(2-nitrobenzoic acid) (DTNB) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Bovine serum albumin and Triton X-100 were obtained from Fluka Chemika-Bio Chemika. 90

3 BIOCHEMISTRYend MOLECULAR BIOLOGY INTERNATIONAL Ac~ po ACh E ( a dimer ) Fig. 1 Proposed model for the representation of the binding sites of AChE for substrate and some inhibitors. Imidazole, hydroxyl of the histidine (His) and serine (Ser) are shown within the esteratic site. While within the anionic and allosteric subsite, (COO')n, represents negative charges due to carboxylic amino acids. The A. S, E. S, A1. S, M. t, Un. c, N. c, ACh, A. C. B. S represents anionic subsite, esteratic subsite, allosteric subsite, mixed type, uncompetitive, non-competitive inhibitor, acetylcholine and aromatic cation binding subsite respectively. Enzyme Preparation." Camel blood was collected in the presence of citrate phosphate-dextroseadenine solution as an anticoagulant from healthy young males (Camelus dromedarius) during slaughtering at a local slaughter house. Erythrocytes were separated from plasma by centrifugation at 1000 x g for 30 min at 4 ~ C, the plasma and the buffy coat removed by aspiration. The cells were washed twice with 10 vol. of 175 mm, Tris/HC1 buffer, ph 7.6. The washed cells were re-suspended in the same 175 mm, isotonic Tris buffer to a hematocrit of 50% and mixed well by inversion for 1 min. The 1 vol. of 50% hematocrit was added dropwise with constant stirring in 7.5 vol. of lysis buffer (10 mm Tris/HC1 buffer, ph 7.8). After lysis the RBC, "ghosts" were harvested by centrifugation at 100,000 x g, 60 min at 4 ~ C and the supematant removed by suction. The ghosts was homogenized using a tissue homogenizer by applying 4/5 strokes (8000/min) in the presence ofprecooled 0.05 M sodium phosphate buffer, ph 7.2, to produce the homogenate. The homogenate was centrifuged at 100,000 x g for 60 min at 4 ~ C. The supernatant was discarded and the pellet suspended in Triton X-100 (1.0 %). The mixture was stirred, re-homogenized and clarified by recentrifugation. The supernatant was collected and the AChE activity in the supernatant was used as "membrane bound ACHE". 91

4 BIOCHEMISTRYond MOLECULAR BIOLOGY INTERNATIONAL Enzyme assays. AChE-catalyzed hydrolysis of the ASCh was followed by the spectrophotometric assay of Ellman et al. [16]. The 5 min. incubation time was selected for the enzyme assay at 22 ~ C. The concentration of DTNB in the assay was same as reported earlier [ 17-19]. Michaelis-Menten constants were estimated by means of Lineweaver-Burk plot [20] using initial velocities obtained over a substrate concentration range from 0.02 to 0.2 mm. The assay conditions for determining the residual activities in the presence of malathion were identical to the above assay procedure, except that a fixed concentration (50.0 to ppm) of malathion was used in the assay medium. Estimation of protein. The protein content of the enzyme preparation was estimated according to the method of Lowry et al. [21], using bovine serum albumin as standard. The detergent, Triton X- 100 interfered with this estimation, but this problem was overcome as mentioned previously [22-24]. The graphs and correlation coefficients were obtained by using GraFit program [25]. RESULTS The value of Km for AChE was determined to be gm in the control system; a value decreased by % in the presence of the malathion ( ppm) (Fig. 2). In association with this change in Kin, there was a decrease in V... of % (Table 1). The (i ~ 024 5" E ~ r 0 0s o ~6 [>,, ~ 1 / 1 L... I i~o,.n,,~ LA --1 [Malathion (ppm) < I -D I ~G k > 16 _ - j I i I I I I J I ~ f' I I / [ASCh] (mm) 1 Fig. 2 Lineweaver-Burk plot of reciprocal of the initial AChE velocity versus reciprocal of the ASCh concentration in the absence and presence of malathion. The correlation coefficient in case of o, e, rt, m, ~x and 9 was , , , , and respectively. Each point represents the mean of four determinations. A inset Hyperbolic plot of v versus [ASCh] to represent the pattern of inhibition through original data i.e. without any transformation. B inset Secondary replot of the Lineweaver-Burk plot, where correlation coefficient was found as and for l/vmaxapp and 1/Kmapp respectively. 92

5 BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL TABLE 1 Effect of malathion on kinetic parameters of camel erythrocyte acetylcholinesterase [Malathion] Kmapp % decreased V... uu % decreased (ppm) (gm) (gm/min/mg) The Kmapp and V... pp were determined by their respective regression equations as well as by the Lineweaver-Burk plot (Fig. 2). The Km.pp is equal to reciprocal of the abscissa intercept while V... pv is the reciprocal of the ordinate intercept for each malathion concentration within the Lineweaver-Burk plot. Vmax was also determined by the secondary reptot (1/V... pp versus malathion concentration) of the Lineweaver-Burk plot (Fig. 2 B inset) and the secondary replot i.e. 1/Vm~x~apu versus 1/[ASCh] of the Dixon plot in Fig. 3, and are represented in the Fig. 3 inset. The Kmapp and V... up were determined by their respective regression equations. The Kmapp is the reciprocal of the abscissa intercept while V... pp the reciprocal of the ordinate intercept for each malathion concentration within the Lineweaver-Burk plot. The nature of the inhibition was of the uncompetitive type in this case. The inhibition constant Ki was estimated by applying the method of Dixon [26] in which 1/v was plotted versus the malathion concentration for each ASCh concentration (Fig. 3), from the secondary replots (1/Km~pp and 1/V... ppversus malathion concentration) of the Lineweaver Burk plot (Fig. 2 B inset) and secondary replot (K~,ppVersus 1/[ASCh]) of the Dixon plot (Fig. 3 inset) [27]. The values of the apparent inhibition constants, Kiapp and Vmaxiaup which were determined by their respective regression equation are presented in Table 2. The Kiapp is equal to the abscissa intercept while Vm,x~,Up is equal to the reciprocal of the ordinate axis for each ASCh concentration in the Dixon plot (Fig. 3). As indicated in tabte 2, the K~,pp decreased from % while Vm,~pp increased between and 172 % over the range of ASCh concentration used while the slope was unchanged. The value of the three important parameters such as K~, Vm,~ and K~ were determined by different methods and presented in table 3. 93

6 BIOCHEMISTRYond MOLECULAR BIOLOGY INTERNATIONAL DISCUSSION The decrease in K m and V... values would suggest that malathion increases substrate affinity for the anionic substrate binding site with decreasing catalytic activity (V~ due to conforrnational changes in the ACHE. However, the decrease in Kmapp value with malathion occurred because the reaction (AChE-ASCh + Malathion - AChE - ASCh - Malathion) removes some of the AChE - ASCh complex thereby causing the reaction (AChE + ASCh -, AChE - ASCh) to proceed to the right. Therefore the Km value was decreased in the presence of malathion as in the case of AChE in older bovine erythrocytes [28]. The nature of the inhibition of AChE by malathion is pureuncompetitive since the 1/V... pp versus [malathion] is linear (Fig. 2 B inset) [29]. The malathion decreases the V... pp and Kmapp in a similar fashion as expected in the case of pure uncompetitive inhibition, as clearly observed from the style of the primary plots in figures 2 A inset and 3. According to the substrate hydrolysis scheme for AChE [30], malathion can interact with the AChE-ASCh complex stage or the acetylated-ache stage. The former possibility is more probable, because if malathion was bound to acetylated-ache, thiocholine (first product of hydrolysis; PI) X w 2 -~'rg [ASCh] (mm) E "e ;> tz II G ~ I f r I I r i I I I [Malathion] (ppm) Fig. 3. Dixon plot for camel erythrocyte membrane-bound AChE at six concentrations of ASCh as shown in legend box. The correlation coefficient in case ofo, e, m, L zx and 9 was , , , , and respectively. Each point represents the mean of four experiments. inset Secondary replot of the Dixon plot, where correlation coefficient was and for 1/Vmaxiap p and Kiapp respectively. 94

7 BIOCHEMISTRY(rod MOLECULAR BIOLOGY INTERNATIONAL TABLE 2 Effect of ASCh on kinetic parameters of camel erythrocyte acetylcholinesterase [ASCh] Kiapp % decreased Vrnaxiapp % increased (mm) (ppm) (gm/min/mg) , , , The K~,pp and Vma were determined by their respective regression equations and Dixon plot (Fig. 3). The Kiapp is the abscissa intercept while Vmaxi,pp is the reciprocal of the ordinate intercept for each ASCh concentration within the Dixon plot. TABLE 3 Kinetic constants estimated by various methods Method Km V~ax K~ (~tm) (gm/min/mg) (ppm) Primary plot Secondary replot ~LBP Secondary replot 2LBP Secondary replot mr Secondary replot 2DP Mean value ,1 S. E.M , The details of primary plot and secondary replots have been given in the text while LBP means Lineweaver-Burk plot and DP means Dixon plot. 1L~p and 2LBP represents replot of 1/V... pp and 1/Km,pp (from Lineweaver-Burk plot) versus malathion concentration respectively (Fig. 2 B inset). ~DP,,d 2DP represents replot of Kiapp and 1/Vmaxiap p (from Dixon plot)versus 1/[ASCh] respectively (Fig. 3 inset). 95

8 BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL would not be affected, while the results show that PI is affected (because optical density was decreased at 412 nan due to a decrease in the color product) by the increase of the concentration of malathion. This means that malathion did not bind with acetylated-ache and surely bound with AChE-ASCh complex. Now, considering the case of AChE-ASCh complex, the anionic site is occupied by the trimethylammonium head of choline of the ASCh and thus is not available to a second ligand. Therefore malathion must bind to another site known as the allosteric peripheral anionic site. The binding of malathion to the peripheral allosteric site within the AChE-ASCh complex stage, is also supported by one latest report, in which it is stated that the nature of inhibition of human erythrocyte AChE by organophosphorus insecticides phosphamidon and malathion was uncompetitive [31]. Moreover, there is one general statement that organophosphorus inhibitors of AChE may also react at the peripheral site [32-34]. The reports about this type of inhibition system (i.e. pure uncompetitive) are rare in the literature, e.g. only HSR-803, two parallel plane acridine araphanes, propidium, cisplatin and malathion are reported as uncompetitive inhibitors of AChE [11, 27, 31, 35-37]. These results reflect that malathion produces a conformational change in the camel erythrocyte AChE by binding with the AChE-ASCh complex, yielding a non-productive ACHE- ASCh-Malathion complex. In this way, malathion decreases the activity of the enzyme since it prevents the proper positioning of the catalytic center for acetylation with substrate to form acetylated ACHE. REFERENCES 1. Eichler, J., Anselmeet, A., Sussman, J.L., Massoulie, J. and Silman, I. (1994) Mol. Pharmacol., 45, Kamal, M.A. and A1-Jafari, A.A. (1996) Cell. Pharm., 3, A1-Jafari, A. A., Duhaiman, A. S. and Kamal, M. A. (1995) Toxicology, 96, A1-Jafari, A.A., Kamal, M.A. and Duhaiman, A.S. (1995) J. Enz. Inhib. 8, A1-Khweetyer, F., Kamal, M.A. and A1-Jafari, A.A. (1996) Toxicol. Lett. 87/2, 3, Kamal, M.A and A1-Jafari, A.A. (1996) Prep. Biochem. Biotech. 26, Quinn, D.M. (1987) Chem. Rev. 87, Shafai, J. and Cortner, J.A. (1971) Biochem. Biophys. Acta, 236, Ott, P., Jeny, B. and Brodbeck, U. (1975) Eur. J. Biochem. 57, Sussman J.L., Harel M., Frolow F., Oefner C., Goldman A., Toker L. and Silman I. (1991) Science, 253, Taylor, J.L., Mayer, R.T. and ttimel, C.M. (1994) Mol. Pharmacol. 45, Krupka, R.M. and Laidler, K.J. (1961) J. Med. Chem. 83, Green, A.L. (1983) Biochem. Pharmacol., 32,

9 BIOCHEMISTRYond MOLECULAR BIOLOGY INTERNATIONAL Giacobini, E., Becker, R., Elbe, R., Mattio, T., Mcllhany, M. and Scaxsella, G. (1987) Neurobiology of acetylcholine (Dun, N., ed.), pp , Plenmn Press, New York. Gray, P. (1991) Biochem. J., 274, Ellman, G. L., Courtney, D., Andres, V. and Featherston, R.M. (1961) Biochem. Pharmacol., 7, A1-Jafari, A.A and Kamal, M.A. (1996)Biochem. Mol. Biol. Int. 38, A1-Jafari, A.A, Kamal, M.A., Duhaiman, A. S. and Al-homaida, A.S. (1996) J. Enz. Inhibit. 1996, 11, A1-Jafari, A.A, Kamal, M.A., Duhaiman, A. S. and Al-homaida, A.S. (1995) Mol. Cell. Biochem., 151, Lineweaver, H. and Burk, D. (1934) J. Amer. Chem. Soc. 56, Lowry, O. H., Rosebrough, N. J., Farr, A. L. and Randall, R. J. (1953) J. Biol. Chem.193, Kamal, M.A., Nasim, F.H. and A1-Jafari, A.A. (1996) Mol. Cell. Biochem., 159, Kamal, M.A., Nasim, F.H. and A1-Jafari, A.A. (1996) Biochem. Mole. Biol. Int., 39 (2), A1-Jafari, A.A, A1-Khweetyer, F., Kamal, M.A. and Al-homaida, A.S. (1996) Japn. J. Pharmacol., 72 (1), A1-Jafari, A.A, Kamal, M.A. and Al-homaida, A.S. (1997) J. Enz. Inhibit.,11, Dixon, M. (1953) Biochem. J., 55, Kamal, M.A. (1996) Anticancer Res., 16, Grzelinska, E., Bartosz, G. and Bartkowiak, A. (1983) Enzyme 30, Segel, I.H. (1975) Behaviour and analysis of rapid equilibrium and steadystate enzyme systems: Enzyme kinetics, pp New York: John Wiley and Sons. Cohen, S. G., Chishti, S. B., Bell, D. A., Howard, S. I., Salih, E. and Cohen, J.B. (1991) Biochem. Biophys. Acta. 1076, Datta, C., Gupta, G. and Sengupta, D. (1994) Ind. J. Med. Res., 100, Friboulet, A., Goudou, D. and Rieger, F. (1986)Neurochem. Int., 9, Friboulet, A., Rieger, F., Goudou, D., Amitai, G. and Taylor, P. (1990) Biochem, 29, Michaelson, S. and Gray, P. (1991) Biochem. Pharmacol., 42, Kishibayashi, N., Ishii, A. and Karasawa, A. (1994) Jpn. J. Pharmacol., 66, Taylor, P. and Lappi, S. (1975) Biochem., 14, Shin, S., Roth, L.G. and Chen, C.H. (1991) Int. J. Biochem., 23,

Affinity labels for studying enzyme active sites. Irreversible Enzyme Inhibition. Inhibition of serine protease with DFP

Affinity labels for studying enzyme active sites. Irreversible Enzyme Inhibition. Inhibition of serine protease with DFP Irreversible Enzyme Inhibition Irreversible inhibitors form stable covalent bonds with the enzyme (e.g. alkylation or acylation of an active site side chain) There are many naturally-occurring and synthetic

More information

BCMB 3100 Chapters 6,7,8 Enzyme Basics. Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot

BCMB 3100 Chapters 6,7,8 Enzyme Basics. Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot BCMB 3100 Chapters 6,7,8 Enzyme Basics Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot Enzymes are biological macromolecules that increase the rate of the

More information

BCMB 3100 Chapters 6,7,8 Enzyme Basics. Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot

BCMB 3100 Chapters 6,7,8 Enzyme Basics. Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot BCMB 3100 Chapters 6,7,8 Enzyme Basics Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot Enzymes are biological macromolecules that increase the rate of the

More information

Acetylcholinesterase Assay Kit

Acetylcholinesterase Assay Kit Acetylcholinesterase Assay Kit Catalog Number KA1607 100 assays Version: 02 Intended for research use only www.abnova.com Table of Contents Introduction... 3 Intended Use... 3 Principle of the Assay...

More information

Biochemistry. Lecture 8 Enzyme Kinetics

Biochemistry. Lecture 8 Enzyme Kinetics Biochemistry Lecture 8 Enzyme Kinetics Why Enzymes? igher reaction rates Greater reaction specificity Milder reaction conditions Capacity for regulation C - - C N 2 - C N 2 - C - C Chorismate mutase -

More information

BCMB 3100 Chapters 6,7,8 Enzyme Basics. Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot

BCMB 3100 Chapters 6,7,8 Enzyme Basics. Six Classes (IUBMB) Kinetics Michaelis-Menten Equation Vo, Km, Vmax, Kcat Lineweaver-Burk Plot BCMB 3100 Chapters 6,7,8 Enzyme Basics Six Classes (IUBMB) Kinetics Enzymes are biological macromolecules that increase the rate of the reaction. Six major groups of enzymes (pgs. 94-95/98-99) Oxidoreductases:

More information

It is generally believed that the catalytic reactions occur in at least two steps.

It is generally believed that the catalytic reactions occur in at least two steps. Lecture 16 MECHANISM OF ENZYME ACTION A chemical reaction such as A ----> P takes place because a certain fraction of the substrate possesses enough energy to attain an activated condition called the transition

More information

Proteins Act As Catalysts

Proteins Act As Catalysts Proteins Act As Catalysts Properties of Enzymes Catalyst - speeds up attainment of reaction equilibrium Enzymatic reactions -10 3 to 10 17 faster than the corresponding uncatalyzed reactions Substrates

More information

Enzymes Part III: Enzyme kinetics. Dr. Mamoun Ahram Summer semester,

Enzymes Part III: Enzyme kinetics. Dr. Mamoun Ahram Summer semester, Enzymes Part III: Enzyme kinetics Dr. Mamoun Ahram Summer semester, 2015-2016 Kinetics Kinetics is deals with the rates of chemical reactions. Chemical kinetics is the study of the rates of chemical reactions.

More information

Enzymatic Assay of PHOSPHOLIPASE C, PHOSPHATIDYLINOSITOL-SPECIFIC (EC )

Enzymatic Assay of PHOSPHOLIPASE C, PHOSPHATIDYLINOSITOL-SPECIFIC (EC ) PRINCIPLE: Step 1: Enzymatic Assay of PHOSPHOLIPASE C, PHOSPHATIDYLINOSITOL-SPECIFIC Acetylcholinesterase (membrane stroma bound) PLP C > Acetylcholinesterase (unbound) Step 2: ATI + DTNB Acetylcholinesterase

More information

Biochemistry 3100 Sample Problems Binding proteins, Kinetics & Catalysis

Biochemistry 3100 Sample Problems Binding proteins, Kinetics & Catalysis (1) Draw an approximate denaturation curve for a typical blood protein (eg myoglobin) as a function of ph. (2) Myoglobin is a simple, single subunit binding protein that has an oxygen storage function

More information

13 Determining the Efficiency of the Enzyme Acetylcholine Esterase Using Steady-State Kinetic Experiment

13 Determining the Efficiency of the Enzyme Acetylcholine Esterase Using Steady-State Kinetic Experiment 13 Determining the Efficiency of the Enzyme Acetylcholine Esterase Using Steady-State Kinetic Experiment 131 Learning Objective This laboratory introduces you to steady-state kinetic analysis, a fundamental

More information

New Findings about Ellman s Method to Determine Cholinesterase Activity

New Findings about Ellman s Method to Determine Cholinesterase Activity New Findings about Ellman s Method to Determine Cholinesterase Activity Alena Komersová a, *, Karel Komers a, and Alexandr Čegan b a Department of Physical Chemistry, Faculty of Chemical Technology, University

More information

2013 W. H. Freeman and Company. 6 Enzymes

2013 W. H. Freeman and Company. 6 Enzymes 2013 W. H. Freeman and Company 6 Enzymes CHAPTER 6 Enzymes Key topics about enzyme function: Physiological significance of enzymes Origin of catalytic power of enzymes Chemical mechanisms of catalysis

More information

Acetylcholinesterase Assay Kit (Colorimetric)

Acetylcholinesterase Assay Kit (Colorimetric) ab138871 Acetylcholinesterase Assay Kit (Colorimetric) Instructions for Use For the detection of Acetylcholinesterase activity in red blood cell membranes, cell extracts, and in other solutions. This product

More information

Acetylcholinesterase Assay Kit (Colorimetric)

Acetylcholinesterase Assay Kit (Colorimetric) ab138871 Acetylcholinesterase Assay Kit (Colorimetric) Instructions for Use For the detection of Acetylcholinesterase activity in blood, cell extracts, and in other solutions. This product is for research

More information

Effect of Temperature Increasing the temperature increases the energy in the system. Two effects kinetic. denaturing

Effect of Temperature Increasing the temperature increases the energy in the system. Two effects kinetic. denaturing Effect of Temperature Increasing the temperature increases the energy in the system Two effects kinetic denaturing Kinetic effect Increased motion of molecules Increased collisions between enzyme/substrate

More information

BIOCHEMISTRY - CLUTCH REVIEW 2.

BIOCHEMISTRY - CLUTCH REVIEW 2. !! www.clutchprep.com CONCEPT: BINDING AFFINITY Protein-ligand binding is reversible, like a chemical equilibrium [S] substrate concentration [E] enzyme concentration Ligands bind to proteins via the same

More information

Reading for today: Chapter 16 (selections from Sections A, B and C) Friday and Monday: Chapter 17 (Diffusion)

Reading for today: Chapter 16 (selections from Sections A, B and C) Friday and Monday: Chapter 17 (Diffusion) Lecture 29 Enzymes Reading for today: Chapter 6 (selections from Sections, B and C) Friday and Monday: Chapter 7 (Diffusion) 4/3/6 Today s Goals Michaelis-Menten mechanism for simple enzyme reactions:

More information

Prof. Jason D. Kahn Your Signature: Exams written in pencil or erasable ink will not be re-graded under any circumstances.

Prof. Jason D. Kahn Your Signature: Exams written in pencil or erasable ink will not be re-graded under any circumstances. Biochemistry 461, Section I May 6, 1997 Exam #3 Prof. Jason D. Kahn Your Printed Name: Your SS#: Your Signature: You have 80 minutes for this exam. Exams written in pencil or erasable ink will not be re-graded

More information

Enzyme Nomenclature Provides a Systematic Way of Naming Metabolic Reactions

Enzyme Nomenclature Provides a Systematic Way of Naming Metabolic Reactions Enzyme Kinetics Virtually All Reactions in Cells Are Mediated by Enzymes Enzymes catalyze thermodynamically favorable reactions, causing them to proceed at extraordinarily rapid rates Enzymes provide cells

More information

New sesquiterpenoids from the rhizomes of Acorus tatarinowii

New sesquiterpenoids from the rhizomes of Acorus tatarinowii Electronic Supplementary Material (ESI) for RSC Advances. This journal is The Royal Society of Chemistry 214 New sesquiterpenoids from the rhizomes of Acorus tatarinowii Xiao-Lin Feng, a Yang Yu, *a Hao

More information

Membrane Proteins: 1. Integral proteins: 2. Peripheral proteins: 3. Amphitropic proteins:

Membrane Proteins: 1. Integral proteins: 2. Peripheral proteins: 3. Amphitropic proteins: Membrane Proteins: 1. Integral proteins: proteins that insert into/span the membrane bilayer; or covalently linked to membrane lipids. (Interact with the hydrophobic part of the membrane) 2. Peripheral

More information

ENZYME KINETICS. Medical Biochemistry, Lecture 24

ENZYME KINETICS. Medical Biochemistry, Lecture 24 ENZYME KINETICS Medical Biochemistry, Lecture 24 Lecture 24, Outline Michaelis-Menten kinetics Interpretations and uses of the Michaelis- Menten equation Enzyme inhibitors: types and kinetics Enzyme Kinetics

More information

Automated Method, Based on Micro-Sequential Injection, for the Study of Enzyme Kinetics and Inhibition

Automated Method, Based on Micro-Sequential Injection, for the Study of Enzyme Kinetics and Inhibition ANALYTICAL SCIENCES JANUARY 2006, VOL. 22 2006 The Japan Society for Analytical Chemistry 9 Automated Method, Based on Micro-Sequential Injection, for the Study of Enzyme Kinetics and Inhibition Original

More information

Lecture 16 (10/23/17) Lecture 16 (10/23/17)

Lecture 16 (10/23/17) Lecture 16 (10/23/17) Lecture 16 (10/23/17) Reading: Ch6; 207-210 Ch6; 192-193, 195-196, 205-206 Problems: Ch6 (text); 18, 19, 20, 21, 22 Ch6 (study guide-facts); 9, 11 Ch6 (study guide-applying); 2 NEXT Reading: Ch6; 213-218

More information

Biochemistry 462a - Enzyme Kinetics Reading - Chapter 8 Practice problems - Chapter 8: (not yet assigned); Enzymes extra problems

Biochemistry 462a - Enzyme Kinetics Reading - Chapter 8 Practice problems - Chapter 8: (not yet assigned); Enzymes extra problems Biochemistry 462a - Enzyme Kinetics Reading - Chapter 8 Practice problems - Chapter 8: (not yet assigned); Enzymes extra problems Introduction Enzymes are Biological Catalysis A catalyst is a substance

More information

Chapter 6 Overview. Enzymes. Catalysis most important function of proteins. Globular protein Increase rate of metabolic processes

Chapter 6 Overview. Enzymes. Catalysis most important function of proteins. Globular protein Increase rate of metabolic processes Chapter 6 Overview Enzymes Catalysis most important function of proteins n Enzymes protein catalysts Globular protein Increase rate of metabolic processes Enzymes kinetics info on reaction rates & measure

More information

Biochemistry Enzyme kinetics

Biochemistry Enzyme kinetics 1 Description of Module Subject Name Paper Name Module Name/Title Enzyme Kinetics Dr. Vijaya Khader Dr. MC Varadaraj 2 1. Objectives 2. Enzymes as biological catalyst 3. Enzyme Catalysis 4. Understanding

More information

Introduction Acetylcholinesterase (AChE) is one of the most important enzymes involved in nerve transmission. The enzyme is bound to cellular membrane

Introduction Acetylcholinesterase (AChE) is one of the most important enzymes involved in nerve transmission. The enzyme is bound to cellular membrane Cell Technology PROTOCOL acella - AChE * Bioluminescence Assay for Monitoring Acetylcholinesterase Activity *Patent Pending Contact Information Address Cell Technology Inc 950 Rengstorff Ave Suite D Mountain

More information

Chapter 8. Enzymes: basic concept and kinetics

Chapter 8. Enzymes: basic concept and kinetics Chapter 8 Enzymes: basic concept and kinetics Learning objectives: mechanism of enzymatic catalysis Michaelis -Menton Model Inhibition Single Molecule of Enzymatic Reaction Enzymes: catalysis chemical

More information

BIOCHEMISTRY/MOLECULAR BIOLOGY

BIOCHEMISTRY/MOLECULAR BIOLOGY Enzymes Activation Energy Chemical reactions require an initial input of energy activation energy large biomolecules are stable must absorb energy to break bonds cellulose energy CO 2 + H 2 O + heat Activation

More information

Chapter 6: Outline-2. Chapter 6: Outline Properties of Enzymes. Introduction. Activation Energy, E act. Activation Energy-2

Chapter 6: Outline-2. Chapter 6: Outline Properties of Enzymes. Introduction. Activation Energy, E act. Activation Energy-2 Chapter 6: Outline- Properties of Enzymes Classification of Enzymes Enzyme inetics Michaelis-Menten inetics Lineweaver-Burke Plots Enzyme Inhibition Catalysis Catalytic Mechanisms Cofactors Chapter 6:

More information

Exam 3 11/10/2014 Last Name (PRINT): First Name: Pg Topic Pts Total possible 3 Multiple. 12 choice 4 Multiple. 9 choice 5 Multiple

Exam 3 11/10/2014 Last Name (PRINT): First Name: Pg Topic Pts Total possible 3 Multiple. 12 choice 4 Multiple. 9 choice 5 Multiple Last Name (PRINT): First Name: Pg Topic Pts Total possible 3 Multiple 12 choice 4 Multiple 9 choice 5 Multiple 12 choice 6 Multiple 16 choice, start T/F 7 T/F and Fill in Blank 22 8 Binding problems 12

More information

Inhibition of Human Erythrocyte Lactate Dehydrogenase by High Concentrations of Pyruvate

Inhibition of Human Erythrocyte Lactate Dehydrogenase by High Concentrations of Pyruvate and Eur. J. Biochem. 78, 569-574 (1977) Inhibition of Human Erythrocyte Lactate Dehydrogenase by High Concentrations of Pyruvate Evidence for the Competitive Substrate Inhibition Chi-Sun WANG Lipoprotein

More information

Enzyme Kinetics: The study of reaction rates. For each very short segment dt of the reaction: V k 1 [S]

Enzyme Kinetics: The study of reaction rates. For each very short segment dt of the reaction: V k 1 [S] Enzyme Kinetics: The study of reaction rates. For the one-way st -order reaction: S the rate of reaction (V) is: V P [ P] moles / L t sec For each very short segment dt of the reaction: d[ P] d[ S] V dt

More information

Lecture 11: Enzymes: Kinetics [PDF] Reading: Berg, Tymoczko & Stryer, Chapter 8, pp

Lecture 11: Enzymes: Kinetics [PDF] Reading: Berg, Tymoczko & Stryer, Chapter 8, pp Lecture 11: Enzymes: Kinetics [PDF] Reading: Berg, Tymoczko & Stryer, Chapter 8, pp. 216-225 Updated on: 2/4/07 at 9:00 pm Key Concepts Kinetics is the study of reaction rates. Study of enzyme kinetics

More information

After lectures by. disappearance of reactants or appearance of. measure a reaction rate we monitor the. Reaction Rates (reaction velocities): To

After lectures by. disappearance of reactants or appearance of. measure a reaction rate we monitor the. Reaction Rates (reaction velocities): To Revised 3/21/2017 After lectures by Dr. Loren Williams (GeorgiaTech) Protein Folding: 1 st order reaction DNA annealing: 2 nd order reaction Reaction Rates (reaction velocities): To measure a reaction

More information

C a h p a t p e t r e r 6 E z n y z m y e m s

C a h p a t p e t r e r 6 E z n y z m y e m s Chapter 6 Enzymes 1. An Introduction to Enzymes Enzymes are catalytically active biological macromolecules Enzymes are catalysts of biological systems Almost every biochemical reaction is catalyzed by

More information

Computational Biology 1

Computational Biology 1 Computational Biology 1 Protein Function & nzyme inetics Guna Rajagopal, Bioinformatics Institute, guna@bii.a-star.edu.sg References : Molecular Biology of the Cell, 4 th d. Alberts et. al. Pg. 129 190

More information

A. One-Substrate Reactions (1) Kinetic concepts

A. One-Substrate Reactions (1) Kinetic concepts A. One-Substrate Reactions (1) Kinetic concepts (2) Kinetic analysis (a) Briggs-Haldane steady-state treatment (b) Michaelis constant (K m ) (c) Specificity constant (3) Graphical analysis (4) Practical

More information

CHAPTER 1: ENZYME KINETICS AND APPLICATIONS

CHAPTER 1: ENZYME KINETICS AND APPLICATIONS CHAPTER 1: ENZYME KINETICS AND APPLICATIONS EM 1 2012/13 ERT 317 BIOCHEMICAL ENGINEERING Course details Credit hours/units : 4 Contact hours : 3 hr (L), 3 hr (P) and 1 hr (T) per week Evaluations Final

More information

Lab training Enzyme Kinetics & Photometry

Lab training Enzyme Kinetics & Photometry Lab training Enzyme Kinetics & Photometry Qing Cheng Qing.Cheng@ki.se Biochemistry Division, MBB, KI Lab lecture Introduction on enzyme and kinetics Order of a reaction, first order kinetics Michaelis-Menten

More information

Bioengineering Laboratory I. Enzyme Assays. Part II: Determination of Kinetic Parameters Fall Semester

Bioengineering Laboratory I. Enzyme Assays. Part II: Determination of Kinetic Parameters Fall Semester Bioengineering Laboratory I Enzyme Assays Part II: Determination of Kinetic Parameters 2016-2017 Fall Semester 1. Theoretical background There are several mathematical models to determine the kinetic constants

More information

Chem 204. Mid-Term Exam I. July 21, There are 3 sections to this exam: Answer ALL questions

Chem 204. Mid-Term Exam I. July 21, There are 3 sections to this exam: Answer ALL questions Chem 204 Mid-Term Exam I July 21, 2009 Name: Answer Key Student ID: There are 3 sections to this exam: Answer ALL questions Section I: Multiple-Choice 20 questions, 2 pts each Section II: Fill-in-the-Blank

More information

Enzymes II. Dr. Mamoun Ahram Summer, 2017

Enzymes II. Dr. Mamoun Ahram Summer, 2017 Enzymes II Dr. Mamoun Ahram Summer, 2017 Kinetics Kinetics is deals with the rates of chemical reactions. Chemical kinetics is the study of the rates of chemical reactions. For the reaction (A P), The

More information

Catalysis. v 0 no catalyst v c -- catalyst present. v c. dt with no catalyst) (v c = -d[a]/dt dt with a catalyst)

Catalysis. v 0 no catalyst v c -- catalyst present. v c. dt with no catalyst) (v c = -d[a]/dt dt with a catalyst) Catalysis Catalysis provides an additional mechanism by which reactants can be converted to products. The alternative mechanism has a lower activation energy than the reaction in the absence of a catalyst.

More information

Part II => PROTEINS and ENZYMES. 2.7 Enzyme Kinetics 2.7a Chemical Kinetics 2.7b Enzyme Inhibition

Part II => PROTEINS and ENZYMES. 2.7 Enzyme Kinetics 2.7a Chemical Kinetics 2.7b Enzyme Inhibition Part II => PROTEINS and ENZYMES 2.7 Enzyme Kinetics 2.7a Chemical Kinetics 2.7b Enzyme Inhibition Section 2.7a: Chemical Kinetics Synopsis 2.7a - Chemical kinetics (or reaction kinetics) is the study of

More information

Lecture 15 (10/20/17) Lecture 15 (10/20/17)

Lecture 15 (10/20/17) Lecture 15 (10/20/17) Reading: Ch6; 98-203 Ch6; Box 6- Lecture 5 (0/20/7) Problems: Ch6 (text); 8, 9, 0,, 2, 3, 4, 5, 6 Ch6 (study guide-facts); 6, 7, 8, 9, 20, 2 8, 0, 2 Ch6 (study guide-applying); NEXT Reading: Ch6; 207-20

More information

Chemical kinetics and catalysis

Chemical kinetics and catalysis Chemical kinetics and catalysis Outline Classification of chemical reactions Definition of chemical kinetics Rate of chemical reaction The law of chemical raction rate Collision theory of reactions, transition

More information

A microscale enzyme experiment based on bacterial gelatinase

A microscale enzyme experiment based on bacterial gelatinase Acta Manilana 63 (215), pp. 97 12 Printed in the Philippines ISSN: 65 137 A microscale enzyme experiment based on bacterial gelatinase Cristina G. Silvestre 1 & Maria Cristina R. Ramos 1,2 * 1 Department

More information

A) at equilibrium B) endergonic C) endothermic D) exergonic E) exothermic.

A) at equilibrium B) endergonic C) endothermic D) exergonic E) exothermic. CHEM 2770: Elements of Biochemistry Mid Term EXAMINATION VERSION A Date: October 29, 2014 Instructor: H. Perreault Location: 172 Schultz Time: 4 or 6 pm. Duration: 1 hour Instructions Please mark the Answer

More information

Patrick, An Introduction to Medicinal Chemistry 5e Chapter 7 Enzymes as drug targets. 1) The structures of isoleucine and valine are as follows.

Patrick, An Introduction to Medicinal Chemistry 5e Chapter 7 Enzymes as drug targets. 1) The structures of isoleucine and valine are as follows. Answers to end-of-chapter questions 1) The structures of isoleucine and valine are as follows. 2 C 2 2 C 2 3 C C 3 3 C C 3 Isoleucine Valine Isoleucine has a larger side chain than valine, and so there

More information

CHEM April 10, Exam 3

CHEM April 10, Exam 3 Name CHEM 3511 April 10, 2009 Exam 3 Name Page 1 1. (12 points) Give the name of your favorite Tech professor and in one sentence describe why you like him/her. 2. (10 points) An enzyme cleaves a chemical

More information

5. Kinetics of Allosteric Enzymes. Sigmoidal Kinetics. Cooperativity Binding Constant

5. Kinetics of Allosteric Enzymes. Sigmoidal Kinetics. Cooperativity Binding Constant 5. Kinetics of Allosteric Enzymes Sigmoidal Kinetics Cooperativity Binding Constant Kinetics of Allosteric Enzymes Contents Definitions Allosteric enzymes Cooperativity Homoallostery Heteroallostery Biphasic

More information

Photo-Affinity Labeling of Specific Acetylcholine-Binding Sites on Membranes

Photo-Affinity Labeling of Specific Acetylcholine-Binding Sites on Membranes Proceedings of the National Academy of Sciences Vol. 67, No. 4, pp. 1688-1694, December 1970 Photo-Affinity Labeling of Specific Acetylcholine-Binding Sites on Membranes Hansruedi Kiefer, Jon Lindstrom,

More information

CHEM 251 (4 credits): Description

CHEM 251 (4 credits): Description CHEM 251 (4 credits): Intermediate Reactions of Nucleophiles and Electrophiles (Reactivity 2) Description: An understanding of chemical reactivity, initiated in Reactivity 1, is further developed based

More information

New Method for the Determination of the Half Inhibition Concentration (IC 50 ) of Cholinesterase Inhibitors

New Method for the Determination of the Half Inhibition Concentration (IC 50 ) of Cholinesterase Inhibitors New Method for the Determination of the Half Inhibition Concentration (IC 50 ) of Cholinesterase Inhibitors Markéta Kovářová a, Karel Komers a, *, Šárka Štěpánková b, Patrik Pařík c, and Alexander Čegan

More information

Biochemical Kinetics: the science that studies rates of chemical reactions An example is the reaction (A P), The velocity, v, or rate, of the

Biochemical Kinetics: the science that studies rates of chemical reactions An example is the reaction (A P), The velocity, v, or rate, of the Biochemical Kinetics: the science that studies rates of chemical reactions An example is the reaction (A P), The velocity, v, or rate, of the reaction A P is the amount of P formed or the amount of A consumed

More information

Lecture 13: Data Analysis for the V versus [S] Experiment and Interpretation of the Michaelis-Menten Parameters

Lecture 13: Data Analysis for the V versus [S] Experiment and Interpretation of the Michaelis-Menten Parameters Biological Chemistry Laboratory Biology 3515/Chemistry 3515 Spring 2018 Lecture 13: Data Analysis for the V versus [S] Experiment and Interpretation of the Michaelis-Menten Parameters 20 February 2018

More information

ENZYMES. by: Dr. Hadi Mozafari

ENZYMES. by: Dr. Hadi Mozafari ENZYMES by: Dr. Hadi Mozafari 1 Specifications Often are Polymers Have a protein structures Enzymes are the biochemical reactions Katalyzers Enzymes are Simple & Complex compounds 2 Enzymatic Reactions

More information

C a h p a t p e t r e r 6 E z n y z m y e m s

C a h p a t p e t r e r 6 E z n y z m y e m s Chapter 6 Enzymes 4. Examples of enzymatic reactions acid-base catalysis: give and take protons covalent catalysis: a transient covalent bond is formed between the enzyme and the substrate metal ion catalysis:

More information

BSc and MSc Degree Examinations

BSc and MSc Degree Examinations Examination Candidate Number: Desk Number: BSc and MSc Degree Examinations 2018-9 Department : BIOLOGY Title of Exam: Molecular Biology and Biochemistry Part I Time Allowed: 1 hour and 30 minutes Marking

More information

Introduction and. Properties of Enzymes

Introduction and. Properties of Enzymes Unit-III Enzymes Contents 1. Introduction and Properties of enzymes 2. Nomenclature and Classification 3. Mechanism of enzyme-catalyzed reactions 4. Kinetics of enzyme-catalyzed reactions 5. Inhibition

More information

Lecture # 3, 4 Selecting a Catalyst (Non-Kinetic Parameters), Review of Enzyme Kinetics, Selectivity, ph and Temperature Effects

Lecture # 3, 4 Selecting a Catalyst (Non-Kinetic Parameters), Review of Enzyme Kinetics, Selectivity, ph and Temperature Effects 1.492 - Integrated Chemical Engineering (ICE Topics: Biocatalysis MIT Chemical Engineering Department Instructor: Professor Kristala Prather Fall 24 Lecture # 3, 4 Selecting a Catalyst (Non-Kinetic Parameters,

More information

BCH 3023 Fall 2008 Exam 2, Form C Name: ANSWER KEY

BCH 3023 Fall 2008 Exam 2, Form C Name: ANSWER KEY Name: ANSWER KEY In class, we discussed one method to linearize the Michaelis-Menton equation. There are other methods to do this, one being an Eadie-Hofstee plot. Given the Eadie-Hofstee plot below, answer

More information

Biochemistry. Lecture 8

Biochemistry. Lecture 8 Biochemistry Lecture 8 Why Enzymes? igher reaction rates Greater reaction specificity Milder reaction conditions Capacity for regulation C - - C N 2 - C N 2 - C - C Chorismate mutase - C - C - C Metabolites

More information

BMB Lecture 9

BMB Lecture 9 BMB 178 2018 Lecture 9 Class 11, November 7, 2018 Steady-state kinetics (I) Case 3. Viscosity Variation If k cat /K m decreases with increasing viscosity, then the reaction is diffusion-limited (S binding

More information

Biological Chemistry and Metabolic Pathways

Biological Chemistry and Metabolic Pathways Biological Chemistry and Metabolic Pathways 1. Reaction a. Thermodynamics b. Kinetics 2. Enzyme a. Structure and Function b. Regulation of Activity c. Kinetics d. Inhibition 3. Metabolic Pathways a. REDOX

More information

Action of the Protease from Streptomyces cellulosae on L-Leu-Gly

Action of the Protease from Streptomyces cellulosae on L-Leu-Gly /. Biochem. 99, 1625-1630 (1986) Action of the Protease from Streptomyces cellulosae on L-Leu-Gly Tetsuo MURO, Yoshio TOMINAGA, and Shigetaka OKADA Osaka Municipal Technical Research Institute, Joto-ku,

More information

BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL. Qing-Xi Chen ~, and Hai-Meng Zhou*

BIOCHEMISTRY and MOLECULAR BIOLOGY INTERNATIONAL. Qing-Xi Chen ~, and Hai-Meng Zhou* Vol. 46, No. 2, October 1998 BOCHEMSTRY and MOLECULAR BOLOGY NTERNATONAL Pages 225-231 An Essential Lysine Residue of Green Crab (Scylla Serrata) Alkaline Phosphatase Qing-Xi Chen ~, and Hai-Meng Zhou*

More information

Chapter 8 Notes. An Introduction to Metabolism

Chapter 8 Notes. An Introduction to Metabolism Chapter 8 Notes An Introduction to Metabolism Describe how allosteric regulators may inhibit or stimulate the activity of an enzyme. Objectives Distinguish between the following pairs of terms: catabolic

More information

Lecture 27. Transition States and Enzyme Catalysis

Lecture 27. Transition States and Enzyme Catalysis Lecture 27 Transition States and Enzyme Catalysis Reading for Today: Chapter 15 sections B and C Chapter 16 next two lectures 4/8/16 1 Pop Question 9 Binding data for your thesis protein (YTP), binding

More information

Enzymes and kinetics. Eva Samcová and Petr Tůma

Enzymes and kinetics. Eva Samcová and Petr Tůma Enzymes and kinetics Eva Samcová and Petr Tůma Termodynamics and kinetics Equilibrium state ΔG 0 = -RT lnk eq ΔG < 0 products predominate ΔG > 0 reactants predominate Rate of a chemical reaction Potential

More information

ing equilibrium i Dynamics? simulations on AchE and Implications for Edwin Kamau Protein Science (2008). 17: /29/08

ing equilibrium i Dynamics? simulations on AchE and Implications for Edwin Kamau Protein Science (2008). 17: /29/08 Induced-fit d or Pre-existin ing equilibrium i Dynamics? Lessons from Protein Crystallography yand MD simulations on AchE and Implications for Structure-based Drug De esign Xu Y. et al. Protein Science

More information

Previous Class. Today. Cosubstrates (cofactors)

Previous Class. Today. Cosubstrates (cofactors) Previous Class Cosubstrates (cofactors) Today Proximity effect Basic equations of Kinetics Steady state kinetics Michaelis Menten equations and parameters Enzyme Kinetics Enzyme kinetics implies characterizing

More information

Previous Class. Today. Michaelis Menten equation Steady state vs pre-steady state

Previous Class. Today. Michaelis Menten equation Steady state vs pre-steady state Previous Class Michaelis Menten equation Steady state vs pre-steady state Today Review derivation and interpretation Graphical representation Michaelis Menten equations and parameters The Michaelis Menten

More information

4. What is the general expression Keq (the equilibrium constant) in terms of product and reactant concentration? tell us about the enzyme.

4. What is the general expression Keq (the equilibrium constant) in terms of product and reactant concentration? tell us about the enzyme. Section 8 Enzyme Kinetics Pre-Activity Assignment 1. Produce a reading log for the sections in your text that discuss the Michaelis-Menten equation and including kcat. 2. Focus on the derivation of the

More information

Characterization of Reversible Kinase Inhibitors using Microfluidic Mobility-Shift Assays

Characterization of Reversible Kinase Inhibitors using Microfluidic Mobility-Shift Assays Application Note 211 Characterization of Reversible Kinase Inhibitors using Microfluidic Mobility-Shift Assays Introduction Current drug discovery efforts typically focus on developing small molecule inhibitors

More information

Kang, Lin-Woo, Ph.D. Professor Department of Biological Sciences Konkuk University Seoul, Korea nd Semester

Kang, Lin-Woo, Ph.D. Professor Department of Biological Sciences Konkuk University Seoul, Korea nd Semester Kang, Lin-Woo, Ph.D. Professor Department of Biological Sciences Konkuk University Seoul, Korea 2018. 2 nd Semester Absorbance Assay (280 nm) Considerations for use Absorbance assays are fast and

More information

Chapter 8: An Introduction to Metabolism

Chapter 8: An Introduction to Metabolism Chapter 8: An Introduction to Metabolism Key Concepts 8.1 An organism s metabolism transforms matter and energy, subject to the laws of thermodynamics 8.2 The free-energy change of a reaction tells us

More information

4 Examples of enzymes

4 Examples of enzymes Catalysis 1 4 Examples of enzymes Adding water to a substrate: Serine proteases. Carbonic anhydrase. Restrictions Endonuclease. Transfer of a Phosphoryl group from ATP to a nucleotide. Nucleoside monophosphate

More information

BIBC 102, Metabolic Biochemistry Problem Set 1 Fall 2002

BIBC 102, Metabolic Biochemistry Problem Set 1 Fall 2002 Enzymology problems 1)The sweet taste of fresh corn is due to the high level of sugar in the kernal. Storebought corn that has been sitting around for a few days is not as sweet because about 50% of the

More information

BMB Lectures 9-10 October 25 and 27, Steady-state kinetics

BMB Lectures 9-10 October 25 and 27, Steady-state kinetics BMB 178 2017 Lectures 9-10 October 25 and 27, 2017 Steady-state kinetics Steady State Kinetics 1. Rate equations 2. Kinetic shortcuts 3. Positional isotope exchange 4. Inhibition Definition of steady state:

More information

Time Dependence of Li + Action on Acetylcholinesterase Activity in Correlation with Spontaneous Quanta! Release of Acetylcholine in Rat Diaphragm

Time Dependence of Li + Action on Acetylcholinesterase Activity in Correlation with Spontaneous Quanta! Release of Acetylcholine in Rat Diaphragm Japanese Journal of Physiology, 39, 429-440, 1989 Time Dependence of Li + Action on Acetylcholinesterase Activity in Correlation with Spontaneous Quanta! Release of Acetylcholine in Rat Diaphragm Panaglota

More information

DetectX ACETYLCHOLINESTERASE Fluorescent Activity Kit

DetectX ACETYLCHOLINESTERASE Fluorescent Activity Kit DetectX ACETYLCHOLINESTERASE Fluorescent Activity Kit 2 Plate Kit Catalog Number K015-F1 Species Independent Sample Types Validated: Serum, Plasma, and Erythrocyte Membranes Please read this insert completely

More information

Lecture 13: Data Analysis and Interpretation of the Michaelis-Menten Parameters

Lecture 13: Data Analysis and Interpretation of the Michaelis-Menten Parameters Biological Chemistry Laboratory Biology 3515/Chemistry 3515 Spring 2019 Lecture 13: Data Analysis and Interpretation of the Michaelis-Menten Parameters 19 February 2019 c David P. Goldenberg University

More information

BBS501 Section 1 9:00 am 10:00 am Monday thru Friday LRC 105 A & B

BBS501 Section 1 9:00 am 10:00 am Monday thru Friday LRC 105 A & B BBS501 Section 1 9:00 am 10:00 am Monday thru Friday LRC 105 A & B Lecturers: Dr. Yie-Hwa Chang Room M130 Phone: #79263 E-mail:changy@slu.edu Dr. Tomasz Heyduk Room M99 Phone: #79238 E-mail: heydukt@slu.edu

More information

Lecture 19 (10/30/17) Enzyme Regulation

Lecture 19 (10/30/17) Enzyme Regulation Reading: Ch5; 164, 166-169 Problems: none Remember Today at 6:30 in PHO-206 is the first MB lecture & quiz NEXT Reading: Ch5; 158-169, 162-166, 169-174 Lecture 19 (10/30/17) Problems: Ch5 (text); 3,7,8,10

More information

Multiple choice: 10 questions, worth 2 points each. Circle all of the correct answers. Some questions many have more than one correct answer.

Multiple choice: 10 questions, worth 2 points each. Circle all of the correct answers. Some questions many have more than one correct answer. Biochemistry I Fall 2014 Exam 1 Dr. Stone Name Page 1 of 6 Some constants and equations that may be useful: K w = [H+][OH-]= 1 x 10 14 K a for H 2 CO 3 = 2.7 x 10-4 K eq for the formation of carbonic acid

More information

Kinetics and Mechanism of Hydrolysis of Acetylthiocholine by Butyrylcholine Esterase

Kinetics and Mechanism of Hydrolysis of Acetylthiocholine by Butyrylcholine Esterase Kinetics and Mechanism of Hydrolysis of Acetylthiocholine by Butyrylcholine Esterase Karel Komers a*, Alexandr Čegan b and Marek Link a a Faculty of Chemical Technology, University of Pardubice, Department

More information

Michaelis-Menten Kinetics

Michaelis-Menten Kinetics Biochem. J. (1967) 103, 251 251 The Use of the Logarithmic Transformation in the Calculation of the Transport Parameters of a System that Obeys Michaelis-Menten Kinetics BY H. E. BARBER,* B. L. WELCH AND

More information

Acetylcholinesterase Assay Kit (Fluorometric - Green)

Acetylcholinesterase Assay Kit (Fluorometric - Green) ab138872 Acetylcholinesterase Assay Kit (Fluorometric - Green) Instructions for Use For the detection of Acetylcholinesterase activity in blood, cell extracts, and in other solutions. This product is for

More information

Chapter 8: An Introduction to Metabolism

Chapter 8: An Introduction to Metabolism AP Biology Reading Guide Name Chapter 8: An Introduction to Metabolism Concept 8.1 An organism s metabolism transforms matter and energy, subject to the laws of thermodynamics 1. Define metabolism. 2.

More information

Bioreactor Engineering Laboratory

Bioreactor Engineering Laboratory Bioreactor Engineering Laboratory Determination of kinetics parameters of enzymatic hydrolysis of lactose catalyzed by β-galactosidase. Supervisor: Karolina Labus, PhD 1. THEROETICAL PART Enzymes are macromolecular,

More information

Chapter 6- An Introduction to Metabolism*

Chapter 6- An Introduction to Metabolism* Chapter 6- An Introduction to Metabolism* *Lecture notes are to be used as a study guide only and do not represent the comprehensive information you will need to know for the exams. The Energy of Life

More information

An Introduction to Metabolism

An Introduction to Metabolism An Introduction to Metabolism Chapter 8 Objectives Distinguish between the following pairs of terms: catabolic and anabolic pathways; kinetic and potential energy; open and closed systems; exergonic and

More information

Enzyme Inhibition and Drug Action

Enzyme Inhibition and Drug Action Enzyme Inhibition and Drug Action Malfunction of enzyme Introduction of enzyme by microorganism Disease Inhibition of enzyme - Interesting but difficult drug strategy Inhib. of enzymes from microorganisms

More information

CHAPTER 6 ENZYME KINETICS AND THERMAL INACTIVATION OF POLYPHENOL OXIDASE

CHAPTER 6 ENZYME KINETICS AND THERMAL INACTIVATION OF POLYPHENOL OXIDASE CHAPTER 6 ENZYME KINETICS AND THERMAL INACTIVATION OF POLYPHENOL OXIDASE OVERVIEW OF CHAPTER Here we report the substrate specificity and enzyme kinetics of Polyphenol oxidase enzyme of A. paeoniifolius.

More information

Membranes 2: Transportation

Membranes 2: Transportation Membranes 2: Transportation Steven E. Massey, Ph.D. Associate Professor Bioinformatics Department of Biology University of Puerto Rico Río Piedras Office & Lab: NCN#343B Tel: 787-764-0000 ext. 7798 E-mail:

More information