Objective: You will be able to justify the claim that organisms share many conserved core processes and features.

Similar documents
Aoife McLysaght Dept. of Genetics Trinity College Dublin

Using an Artificial Regulatory Network to Investigate Neural Computation

Biology 155 Practice FINAL EXAM

In previous lecture. Shannon s information measure x. Intuitive notion: H = number of required yes/no questions.

Edinburgh Research Explorer

A p-adic Model of DNA Sequence and Genetic Code 1

UNIVERSITY OF CAMBRIDGE INTERNATIONAL EXAMINATIONS General Certifi cate of Education Advanced Subsidiary Level and Advanced Level

Genetic code on the dyadic plane

CHEMISTRY 9701/42 Paper 4 Structured Questions May/June hours Candidates answer on the Question Paper. Additional Materials: Data Booklet

Genetic Code, Attributive Mappings and Stochastic Matrices

Lecture IV A. Shannon s theory of noisy channels and molecular codes

Mathematics of Bioinformatics ---Theory, Practice, and Applications (Part II)

9/11/18. Molecular and Cellular Biology. 3. The Cell From Genes to Proteins. key processes

A Minimum Principle in Codon-Anticodon Interaction

The degeneracy of the genetic code and Hadamard matrices. Sergey V. Petoukhov

9/2/17. Molecular and Cellular Biology. 3. The Cell From Genes to Proteins. key processes

Reducing Redundancy of Codons through Total Graph

A Mathematical Model of the Genetic Code, the Origin of Protein Coding, and the Ribosome as a Dynamical Molecular Machine

A modular Fibonacci sequence in proteins

Lect. 19. Natural Selection I. 4 April 2017 EEB 2245, C. Simon

Natural Selection. Nothing in Biology makes sense, except in the light of evolution. T. Dobzhansky

Crystal Basis Model of the Genetic Code: Structure and Consequences

Three-Dimensional Algebraic Models of the trna Code and 12 Graphs for Representing the Amino Acids

The genetic code, 8-dimensional hypercomplex numbers and dyadic shifts. Sergey V. Petoukhov

Analysis of Codon Usage Bias of Delta 6 Fatty Acid Elongase Gene in Pyramimonas cordata isolate CS-140

ATTRIBUTIVE CONCEPTION OF GENETIC CODE, ITS BI-PERIODIC TABLES AND PROBLEM OF UNIFICATION BASES OF BIOLOGICAL LANGUAGES *

Bio 111 Study Guide Chapter 6 Tour of the Cell

Ribosome kinetics and aa-trna competition determine rate and fidelity of peptide synthesis

Get started on your Cornell notes right away

THE GENETIC CODE INVARIANCE: WHEN EULER AND FIBONACCI MEET

Big Idea 1: The process of evolution drives the diversity and unity of life. Sunday, August 28, 16

Chapter 4: Cells: The Working Units of Life

SEQUENCE ALIGNMENT BACKGROUND: BIOINFORMATICS. Prokaryotes and Eukaryotes. DNA and RNA

Natural Selection. Nothing in Biology makes sense, except in the light of evolution. T. Dobzhansky

Biology. 7-2 Eukaryotic Cell Structure 10/29/2013. Eukaryotic Cell Structures

Midterm Review Guide. Unit 1 : Biochemistry: 1. Give the ph values for an acid and a base. 2. What do buffers do? 3. Define monomer and polymer.

Slide 1 / 54. Gene Expression in Eukaryotic cells

Eukaryotic cells are more complex than prokaryotic cells. They are identified by the presence of certain membrane-bound organelles.

Abstract Following Petoukhov and his collaborators we use two length n zero-one sequences, α and β,

EUBACTERIA CYTOLOGY CHLOROPLAST: ABSENT RIBOSOME CAPSULE CELL WALL PROTOPLAST CELL MEMBRANE NUCLEOID MESOSOME CYTOSOL FLAGELLA

From Gene to Protein

Chapter 6 A Tour of the Cell

Chapter 6: A Tour of the Cell

Foundations of biomaterials: Models of protein solvation

Concept 6.1 To study cells, biologists use microscopes and the tools of biochemistry

3.2 Cell Organelles. KEY CONCEPT Eukaryotic cells share many similarities.

Structure and Function. Overview of BCOR 11. Various forms of Carbon molecules and functional groups

AP Biology Notes Outline Enduring Understanding 1.B. Big Idea 1: The process of evolution drives the diversity and unity of life.

Chapter 7 Learning Targets Cell Structure & Function

PROTEIN SYNTHESIS INTRO

CODING A LIFE FULL OF ERRORS

Chapter 6: A Tour of the Cell

The Genetic Code Degeneracy and the Amino Acids Chemical Composition are Connected

7-2 Eukaryotic Cell Structure

In Silico Modelling and Analysis of Ribosome Kinetics and aa-trna Competition

A. The Cell: The Basic Unit of Life. B. Prokaryotic Cells. D. Organelles that Process Information. E. Organelles that Process Energy

Phylogeny 9/8/2014. Evolutionary Relationships. Data Supporting Phylogeny. Chapter 26

Introduction to Cells- Stations Lab

7.L.1.2 Plant and Animal Cells. Plant and Animal Cells

Cell Theory. Cell Structure. Chapter 4. Cell is basic unit of life. Cells discovered in 1665 by Robert Hooke

Evaluate evidence provided by data from many scientific disciplines to support biological evolution. [LO 1.9, SP 5.3]

CHAPTER 3. Cell Structure and Genetic Control. Chapter 3 Outline

Cell Structure. Chapter 4. Cell Theory. Cells were discovered in 1665 by Robert Hooke.

Cell (Learning Objectives)

Components of a functional cell. Boundary-membrane Cytoplasm: Cytosol (soluble components) & particulates DNA-information Ribosomes-protein synthesis

Overview of Cells. Prokaryotes vs Eukaryotes The Cell Organelles The Endosymbiotic Theory

A. The Cell: The Basic Unit of Life. B. Prokaryotic Cells. C. Eukaryotic Cells. D. Organelles that Process Information

Guided Reading Activities

Chapter 4. Table of Contents. Section 1 The History of Cell Biology. Section 2 Introduction to Cells. Section 3 Cell Organelles and Features

Chapter 4 Active Reading Guide A Tour of the Cell

Cell Organelles. Wednesday, October 22, 14

Practical Bioinformatics

Unit 3: Cells. Objective: To be able to compare and contrast the differences between Prokaryotic and Eukaryotic Cells.

Cell Structure. Chapter 4

Turns sunlight, water & carbon dioxide (CO 2 ) into sugar & oxygen through photosynthesis

Basic Structure of a Cell

Chapter 6: A Tour of the Cell

Principles of Cellular Biology

Cell Organelles Tutorial

Cell Types. Prokaryotes

Outline. Cell Structure and Function. Cell Theory Cell Size Prokaryotic Cells Eukaryotic Cells Organelles. Chapter 4

02/02/ Living things are organized. Analyze the functional inter-relationship of cell structures. Learning Outcome B1

2011 The Simple Homeschool Simple Days Unit Studies Cells

Cell Organelles. a review of structure and function

In Silico Modelling and Analysis of Ribosome Kinetics and aa-trna Competition

UNIT 3 CP BIOLOGY: Cell Structure

4.1 Cells are the Fundamental Units of Life. Cell Structure. Cells. Fundamental units of life Cell theory. Except possibly viruses.

2013 Japan Student Services Origanization

Zimmerman AP Biology CBHS South Name Chapter 7&8 Guided Reading Assignment 1) What is resolving power and why is it important in biology?

2. Cellular and Molecular Biology

Zimmerman AP Biology CBHS South Name Chapter 7&8 Guided Reading Assignment 1) What is resolving power and why is it important in biology?

Chapter 26: Phylogeny and the Tree of Life Phylogenies Show Evolutionary Relationships

Topic 3: Cells Ch. 6. Microscopes pp Microscopes. Microscopes. Microscopes. Microscopes

Warm-Up. Answer the following questions in a complete sentence and explain why each answer is correct.

Eukaryotic Cell Structure. 7.2 Biology Mr. Hines

3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies. 3. Evolution makes sense of homologies

Protein Synthesis. Unit 6 Goal: Students will be able to describe the processes of transcription and translation.

Lecture Series 3 The Organization of Cells

Reading Assignments. A. The Cell: The Basic Unit of Life. Lecture Series 3 The Organization of Cells

Exam: Introduction to Cells and Cell Function

Transcription:

Objective: You will be able to justify the claim that organisms share many conserved core processes and features. Do Now: Read Enduring Understanding B

Essential knowledge: Organisms share many conserved core processes and features that evolved and are widely distributed among organisms today.

Structural and functional evidence supports the relatedness of all domains. The Three Domains of Life

Structural and functional evidence supports the relatedness of all domains. DNA and RNA are carriers of genetic information through transcription, translation and replication. Major features of the genetic code are shared by all modern living systems. Metabolic pathways are conserved across all currently recognized domains.

Figure 4.4 Nuclear envelope TRANSCRIPTION DNA RNA PROCESSING Pre-mRNA TRANSCRIPTION DNA mrna TRANSLATION mrna Ribosome TRANSLATION Ribosome Polypeptide Polypeptide (a) Bacterial cell (b) Eukaryotic cell

Figure 4.5 DNA template strand 3 A C C A A A C C G A G T 5 5 T G G T T T G G C T C A 3 TRANSCRIPTION mrna 5 U G G U U U G G C U C A 3 TRANSLATION Codon Protein Trp Phe Gly Ser Amino acid

First mrna base (5 end of codon) Third mrna base (3 end of codon) Figure 4.6 Second mrna base U C A G U UUU UUC UUA UUG Phe Leu UCU UCC UCA UCG Ser UAU UAC UAA UAG Tyr Stop Stop UGU UGC UGA UGG Cys Stop Trp U C A G C CUU CUC CUA CUG Leu CCU CCC CCA CCG Pro CAU CAC CAA CAG His Gln CGU CGC CGA CGG Arg U C A G A AUU AUC AUA AUG IIe Met or start ACU ACC ACA ACG Thr AAU AAC AAA AAG Asn Lys AGU AGC AGA AGG Ser Arg U C A G G GUU GUC GUA GUG Val GCU GCC GCA GCG Ala GAU GAC GAA GAG Asp Glu GGU GGC GGA GGG Gly U C A G

Figure 4.7 (a) Tobacco plant expressing a firefly gene (b) Pig expressing a jellyfish gene

Figure 7.UN6 Glycolysis Pyruvate oxidation Citric acid cycle Oxidative phosphorylation ATP ATP ATP

Structural and functional evidence supports the relatedness of all domains. The Three Domains of Life

Structural evidence supports the relatedness of all eukaryotes. Cytoskeleton (a network of structural proteins that facilitate cell movement, morphological integrity and organelle transport) Membrane-bound organelles Endomembrane systems, including the nuclear envelope Endosymbiotic Theory (mitochondria and/or chloroplasts) Linear chromosomes

Figure 4.26a

Figure 4.7a ENDOPLASMIC RETICULUM (ER) Smooth ER Flagellum Rough ER Centrosome Nuclear envelope Nucleolus Chromatin NUCLEUS Plasma membrane CYTOSKELETON: Microfilaments Intermediate filaments Microtubules Ribosomes Microvilli Peroxisome Golgi apparatus Mitochondrion Lysosome

Figure 4.7b Nuclear envelope Nucleolus Chromatin Rough endoplasmic reticulum Smooth endoplasmic reticulum NUCLEUS Golgi apparatus Ribosomes Central vacuole Microfilaments Intermediate filaments Microtubules CYTO- SKELETON Mitochondrion Peroxisome Plasma membrane Cell wall Wall of adjacent cell Chloroplast Plasmodesmata

Figure 9.3 Chromosomes because they are condensed Genome 2 m Chromosomes are made of DNA

Figure 4.5-3 Nucleus Smooth ER cis Golgi Rough ER Golgi adds special protein markers to determine destination trans Golgi Plasma membrane

Reorganize Your Notes Eubacteria Only add in similarities Archaea Eukarya

Objective: You will be able to construct phylogenic trees and cladograms to depict evolutionary history. Do Now:

Essential knowledge: Phylogenetic trees and cladograms are graphical representations (models) of evolutionary history that can be tested.

A Simple Phylogenetic Tree The length of the lines in a phylogenetic tree represents time

A More Complex Phylogenetic Tree Phylogenetic trees use similar features to classify organisms into taxon Make a list of the information you can you learn from this phylogenetic tree?

A Simple Cladogram Cladograms are concerned with the way organisms are related to common ancestors through shared characteristics A shared derived character is an evolutionary novelty unique to a particular group of organisms

Phylogenetic Trees and Cladograms Phylogenetic trees and cladograms illustrate speciation that has occurred, in that relatedness of any two groups on the tree is shown by how recently two groups had a common ancestor.

Phylogenetic Trees and Cladograms Phylogenetic trees and cladograms can be constructed from morphological similarities of living or fossil species, and from DNA and protein sequence similarities, by employing computer programs that have sophisticated ways of measuring and representing relatedness among organisms.

Phylogenetic Trees and Cladograms Phylogenetic trees and cladograms are dynamic (i.e., phylogenetic trees and cladograms are constantly being revised), based on the biological data used, new mathematical and computational ideas, and current and emerging knowledge.

CHARACTERS Lancelet (outgroup) Lamprey Bass Frog Turtle Leopard Figure 26. Outgroup is included for comparisons TAXA Lancelet (outgroup) Lamprey Vertebral column (backbone) Hinged jaws Four walking legs Amnion Vertebral column Hinged jaws Four walking legs Bass Frog Turtle Hair Amnion Hair Leopard (a) Character table (b) Phylogenetic tree