one ν im: transition state saddle point

Similar documents
Density Functional Theory

with the larger dimerization energy also exhibits the larger structural changes.

IFM Chemistry Computational Chemistry 2010, 7.5 hp LAB2. Computer laboratory exercise 1 (LAB2): Quantum chemical calculations

Physical Chemistry II Recommended Problems Chapter 12( 23)

Ab initio calculations for potential energy surfaces. D. Talbi GRAAL- Montpellier

Molecular Orbital Theory. Molecular Orbital Theory: Electrons are located in the molecule, not held in discrete regions between two bonded atoms

Advanced Electronic Structure Theory Density functional theory. Dr Fred Manby

Performance of Hartree-Fock and Correlated Methods

Project 1 Report File: Chem4PB3_project_1_2017-solutions last changed: 02-Feb-2017

Practical 1: Structure and electronic properties of organic molecules. B/ Structure, electronic and vibrational properties of the water molecule

Same idea for polyatomics, keep track of identical atom e.g. NH 3 consider only valence electrons F(2s,2p) H(1s)

Walter Kohn was awarded with the Nobel Prize in Chemistry in 1998 for his development of the density functional theory.

Please read and sign the Honor Code statement below:

Modeling Ultrafast Deactivation in Oligothiophenes via Nonadiabatic Dynamics

Lone Pairs: An Electrostatic Viewpoint

Molecular Simulation I

AN INTRODUCTION TO MOLECULAR ORBITALS

( R)Ψ el ( r;r) = E el ( R)Ψ el ( r;r)

CHEM 344 Molecular Modeling

Literature values: ΔH f, gas = % error Source: ΔH f, solid = % error. For comparison, your experimental value was ΔH f = phase:

Electron Correlation

MO Calculation for a Diatomic Molecule. /4 0 ) i=1 j>i (1/r ij )

Session 1. Introduction to Computational Chemistry. Computational (chemistry education) and/or (Computational chemistry) education

Electron Correlation - Methods beyond Hartree-Fock

Speed of light c = m/s. x n e a x d x = 1. 2 n+1 a n π a. He Li Ne Na Ar K Ni 58.

Computational Chemistry Using the University of Alaska WebMO Site

Independent electrons in an effective potential

OVERVIEW OF QUANTUM CHEMISTRY METHODS

More Tutorial at

Module 6 1. Density functional theory

Lecture 4: Band theory

Basic Organic Chemistry Course code : CHEM (Pre-requisites : CHEM 11122)

Computational Chemistry I

Density Functional Theory - II part

Study of Ozone in Tribhuvan University, Kathmandu, Nepal. Prof. S. Gurung Central Department of Physics, Tribhuvan University, Kathmandu, Nepal

Exchange Correlation Functional Investigation of RT-TDDFT on a Sodium Chloride. Dimer. Philip Straughn

QUANTUM CHEMISTRY FOR TRANSITION METALS

For more info visit Chemical bond is the attractive force which holds various constituents together in a molecule.

Computational Methods. Chem 561

Lab #3: Choice of Theoretical Method

An Introduction to Quantum Chemistry and Potential Energy Surfaces. Benjamin G. Levine

Exam. Name. MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.

Chapter 2: Alkanes MULTIPLE CHOICE

STRUCTURE. Dr. Sheppard CHEM 2411 Spring 2015

Introduction to Density Functional Theory

Electronic communication through molecular bridges Supporting Information

Example questions for Molecular modelling (Level 4) Dr. Adrian Mulholland

List of Figures Page Figure No. Figure Caption No. Figure 1.1.

The wavefunction that describes a bonding pair of electrons:

Supporting Information

The symmetry properties & relative energies of atomic orbitals determine how they react to form molecular orbitals. These molecular orbitals are then

This is a very succinct primer intended as supplementary material for an undergraduate course in physical chemistry.

CHAPTER TEN MOLECULAR GEOMETRY MOLECULAR GEOMETRY V S E P R CHEMICAL BONDING II: MOLECULAR GEOMETRY AND HYBRIDIZATION OF ATOMIC ORBITALS

1 Introduction to Computational Chemistry (Spartan)

CHEM3023: Spins, Atoms and Molecules

John Keller Department of Chemistry & Biochemistry University of Alaska Fairbanks

Quantum Chemical Simulations and Descriptors. Dr. Antonio Chana, Dr. Mosè Casalegno

Chapter 7. Chemical Bonding I: Basic Concepts

Be H. Delocalized Bonding. Localized Bonding. σ 2. σ 1. Two (sp-1s) Be-H σ bonds. The two σ bonding MO s in BeH 2. MO diagram for BeH 2

CHEM6085: Density Functional Theory Lecture 10

Jack Simons, Henry Eyring Scientist and Professor Chemistry Department University of Utah

Electronic structure calculations: fundamentals George C. Schatz Northwestern University

Density Functional Theory

Electronic structure theory: Fundamentals to frontiers. 2. Density functional theory

CHEM 545 Theory and Practice of Molecular Electronic Structure. Anna I. Krylov. DON T PANIC.

Chemical Bonding II: Molecular Geometry and Hybridization of Atomic Orbitals

NAME: FIRST EXAMINATION

Chemical Bonding II: Molecular Geometry and Hybridization of Atomic Orbitals Chapter 1

QUANTUM MECHANICS AND MOLECULAR STRUCTURE

Figure 1: Transition State, Saddle Point, Reaction Pathway

Chapter 13. Conjugated Unsaturated Systems. +,., - Allyl. What is a conjugated system? AllylicChlorination (High Temperature)

CHEMISTRY XL-14A CHEMICAL BONDS

Introduction to Computational Chemistry Computational (chemistry education) and/or. (Computational chemistry) education

Chapter 9. Lewis Theory-VSEPR Valence Bond Theory Molecular Orbital Theory

STEREOCHEMISTRY OF ALKANES AND CYCLOALKANES CONFORMATIONAL ISOMERS

Chem 263 Notes Sept. 26, 2013

Molecular Magnetic Properties

Australian Journal of Basic and Applied Sciences

Exchange-Correlation Functional

EXAM INFORMATION. Radial Distribution Function: B is the normalization constant. d dx. p 2 Operator: Heisenberg Uncertainty Principle:

Modeling of S-N Bond Breaking in an Aromatic Sulfilimine. By Jacob Brunsvold & Katrina Hanson Advisor: Stacey Stoffregen

We refer to alkanes as hydrocarbons because they contain only C (carbon) and H(hydrogen) atoms. Since alkanes are the major components of petroleum

Only by constructing a model does one at first appreciate fully how. cyclohexane can exist in a non-planar, beautifully symmetrical, and apparently

Toward molecular switches and biochemical detectors employing adaptive femtosecond-scale laser pulses

Carbon Compounds. Electronegativity. Chemical Bonding Part 1c. Bond Polarity. Bond Polarity

Intro to ab initio methods

Quantum Chemical and Dynamical Tools for Solving Photochemical Problems

Introduction to Computational Chemistry: Theory

Lecture 8: Introduction to Density Functional Theory

Journal of Computational Methods in Molecular Design, 2013, 3 (1):1-8. Scholars Research Library (

Jack Smith. Center for Environmental, Geotechnical and Applied Science. Marshall University

Semi-Empirical MO Methods

Conjugated Systems, Orbital Symmetry and UV Spectroscopy

Molecular Magnetism. Magnetic Resonance Parameters. Trygve Helgaker

Molecular Mechanics: The Ab Initio Foundation

Chapter 3 AN INTRODUCTION TO ORGANIC COMPOUNDS NOMENCLATURE, PHYSICAL PROPERTIES, REPRESENTATION OF STRUCTURE AND

right (A, B, and C Example A corresponds to the structure reported by the Chirik group).

Organic Nomenclature

Why Is Molecular Interaction Important in Our Life

Molecular Geometry and Bonding Theories. Molecular Shapes. Molecular Shapes. Chapter 9 Part 2 November 16 th, 2004

Transcription:

Hypothetical Potential Energy Surface Ethane conformations Hartree-Fock theory, basis set stationary points all ν s >0: minimum eclipsed one ν im: transition state saddle point multiple ν im: hilltop 1 Source: Hyperchem calculation geometry relaxed at each angle 2 Thermodynamic versus kinetic control Potential Energy Surface for F( 2P3/2, 2P1/2 ) + CH4 FH + CH3 E relates to thermodynamic control. MP2 with 6-311+G(2df,2pd) basis set Source: Cipriano Rángel, et al., J. Phys. Chem. A, 109 (7), 1441-1448, 2005. staggered Ea relates to kinetic control. Engel's Figures 15.4,5,6 3 4

E correlation E nonrelativistic E Section 4: Hartree Fock, Configuration Interaction (CI), and Exact Dissociation of H2 is inaccurate for homolytic bond cleavage E.g., H2 (1Σg) 2H (2S1/2) Electron correlation is everything except relativity that is not in. Correlation energy increases in magnitude with increasing number of electrons. R: bad U: poor CI corrects for correlation. Full-CI E > exact E because of small 6-31G(d,p) basis set. 5 406 477 184 Ecorrelation (Hartree) Percent -0.043-0.153-0.313-0.725-0.043 1.5 0.4 0.3 0.1 3.8 CH4 H2O -40.219-0.291 0.7-76.067-0.364 0.5 H2O2-150.861-0.520 0.5 CO -112.796-100.074-0.520-0.373 0.5 0.4 6 source: Lowe's Quantum Chemistry, Tables 11-2 and 11-4. basis set Hartree-Fock is incorrect for homolytic bond cleavage. 276 289-163 E (Hartree) -2.862-37.689-99.409-526.817-1.132 Section 6: Correlation energy, continued Section 4: Limiting Hartree-Fock results ΔE (kj/mol) CH3 CH3 CH3 F F F atom or molecule He C F Ar H2 error -130-188 -347 H2 at R=1.4a0 6-31G(d,p) BeH2 double zeta H2O 39-STO CISD Full CI with the stated basis set -0.034 same as CISD -0.074-0.076-0.28-0.30 exact correlation energy with infinite basis -0.041-0.14-0.37 source: Modern Quantum Chemistry, by Szabo and Ostlund, Dover, 1996, section 4.3. Hartree-Fock is better for reactions that maintain electron pairs. A+H+ AH+ H+ affinity (kj/mol) ammonia -50 pyridine 29 trimethylamine 50-38 29 46 source: Engel's Tables 15.2 and 15.4. 6-311+G(d,p) basis error -12 0 4 7 8

CI-Singles and Doubles is not size consistent. Density Functional Theory (DFT) Example He monomer and dimer with {1s,2s} basis. CISD for He monomer Figures are from Engel's chapter 15. DFT focuses on ρ(x,y,z) rather than on Ψ(all electrons' x,y,z) Walter Kohn (1923-2016) and Pierre Hohenberg theoretical basis, 1963 CISD for HeaHeb dimer Walter Kohn Nobel 1998 www.nobelprize.org Walter Kohn and Lu Sham, 1964 expanded ρ(x,y,z) in electron orbitals (like MO theory) Kohn-Sham equations for orbitals and their energies (SCF) CISD for separated Hea Heb monomers includes four additional double excitations. CIS and full CI are size consistent. [ ZA 1 2 + 2 r RA nuclei A ρ( r ' ) r r ' d r ' + v xc ] KS KS ψks i ( r ) = ϵi ψ i ( r ) 9 10 Kohn-Sham and Hartree-Fock orbitals for ethene Density Functional Theory, results mean absolute errors Bond Lengths1 Method (Angstrom) 0.022 B3LYP 0.004 HOMO-LUMO 0.24 Eh HOMO-LUMO 0.55 Eh Dipole3 (Debye) 0.21 0.03 1. for 32 molecules containing only first-row atoms. Basis set 6-311G(d,p). Cramer, Essentials of Computational Chemistry, Table 8.5. 2. Atomization energies were calculated for the G2 set: 55 molecules. Basis. Cramer, Essentials of Computational Chemistry, Table 8.1. 3. Average error in Debye for CO, H2O, H2S, NH3, PH3 and SO Cohen, Chemical Physics Letters, 299, 465-472, 1999. 11 source: GAMESS, images from wxmacmolplt. Atomization2 (kj/mol) 310 9.2 12

Section 8: model selection Warren Hehre presents four methods Uncorrelated 1 Hartree Fock with the 3-21G basis set basis set is defined for H - Cs (55) Section 8: model selection, continued Most bond lengths are good from all three methods. Tables 15.9 and 15.10, C-X bonds method /3-21G / DFT B3LYP/ 2 Hartree-Fock with the basis set larger and polarized basis set, better than 3-21G basis set is defined for H - Zn (30) Correlated (post-hartree Fock) 3 MP2/ I am skipping MP2. mean absolute error (Å) 0.013 0.014 0.006 4 DFT B3LYP/ about twice as slow as / computation time proportional to N 3 13 14 ΔE of bond cleavage is much better with correlated methods. dipole moments (D) reflect geometry and charge distribution reaction energies (kj/mol) 1 debye = 3.33564 10-30 C m molecule CO H2O 3-21G -0.40 2.39 DFT B3LYP -0.26 2.20 0.06 2.09 (CRC) 0.11 1.86 3-21G DFT B3LYP experiment bond cleavage CH3-CH3 2 CH3 285 293 406 406 F-F 2 F -121-138 176 159 H2S NH3 1.41 1.41 1.43 0.98 isomerization 1.76 1.92 1.91 1.47 acetic acid methyl formate 54 54 50 75 PH3 SO2 0.87 0.88 0.96 0.57 ethanol dimethyl ether 25 29 21 4 2.29 2.19 1.77 1.63 mean abs err 0.45 0.41 0.28 3.3 7.9 4.2 9.6 2.9 8.8 2.8 7.3 conformational n-butane gauche methylcyclohexane equatorial axial 15 source: Engel, Quantum Chemistry and Spectroscopy, Tables 15.11, 15.12, 15.14. 16

comparison of and correlated activation energies Section 9: Graphical Models HOMO and LUMO are important in chemical reactivity errors in Ea (kj/mol) for 12 organic elementary gas-phase reactions. average error maximum error 3-21G 6-31(d) 40 60 160 130 DFT B3LYP 25 90 frontier orbitals for concerted additions HOMO source: Levine, Quantum Chemistry, 5th ed., page 703. activation energies (kj/mol) calculated with the basis set reaction DFT B3LYP 205 121 130 167 84 84 CH3NC CH3CN 192 HCO2CH2CH3 HCO2H + C2H4 293 172 222 LUMO 159 167,184 ethene + butadiene source: Hehre's Table 15.17 (Engel, Quantum Chemistry and Spectroscopy). 17 but not ethene + ethene Engel's figures 15.30 and 15.31. 18 singlet oxygen adds to diphenylisobenzofuran electron density surfaces can show bonds and lone pairs DPBF is used to trap singlet oxygen. O 2 adds across the furan ring. diborane B2H6 molecule e density (0.12 surface) e density (0.08 "bond" surface) LUMO ammonia NH3 pyramidal planar Pictures from Spartan DFT B3LYP 6-31G* HOMO Spartan image 19 Engel's Figure 15.39 20

electrostatic potential near H correlates with acidity Spartan. PM3 geometry. electrostatic potential. 21