Semester -III Full nomenclature of paper Max. Marks Credits/ hrs. BOT-111 Plant Physiology 80 4 BOT-112 Ecology-I 80 4 BOT-101 Cell biology 80 4

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1 2 SYLLABUS SYLLABUS Semester -III Full nomenclature of paper Max. Marks Credits/ hrs. BOT-111 Plant Physiology 80 4 Semester -1 Full nomenclature of paper Max. Marks Credits/ hrs. BOT-112 Ecology-I 80 4 BOT-101 Cell biology 80 4 BOT-113 Plant Development 80 4 BOT-102 Tools & Techniques 80 4 BOT-114 Plant Biotechnology-I 80 4 BOT-103 Biology and diversity of Viruses 80 4 BOT-115 Biostatistics and Computers 80 4 Bacteria & Fungi Laboratory Course-III 150 20 BOT-104 Biology and Diversity of Algae, 80 4 Seminar - III 50 1 Bryophytes & Pteridophytes Internal Assessment 20 in each theory paper 1 BOT-105 Plant Gentics 80 4 Total Marks (Semester-III) 700 Laboratory Course-I 150 20 Seminar - 1 50 1 Semester -IV Full nomenclature of paper Max. Marks Credits/ hrs. Internal Assessment 20 in each theory paper 1 BOT-116 Plant Metabolism 80 4 Total Marks (Semester-1) 700 BOT-117 Ecology-II 80 4 Semester -I1 Full nomenclature of paper Max. Marks Credits/ hrs. BOT-118 Plant Reproduction 80 4 BOT-106 Molecular biology of Plants 80 4 BOT-119 Plant Biotechnology-II 80 4 BOT-107 Plant Breeding an Cytogenetics 80 4 BOT-120 Plant Pathology 80 4 BOT-108 Biology and diversity of 80 4 Laboratory Course-IV 150 20 Gymnosperms Seminar - IV 50 1 BOT-109 Taxonomy of Angiosperms 80 4 Internal Assessment 20 in each theory paper 1 BOT-110 Evolutionary and Economic Botany 80 4 Total Marks (Semester-IV) 700 Laboratory Course-II 150 20 Seminar - II 50 1 Internal Assessment 20 in each theory paper 1 Total Marks (Semester-II) 700

3 4 SYLLABUS SEMESTER - III BOT-111 - Plant Physiology Plant growth regulators and eleicitors : Biosynthesis, Types, Physiological effects & Mechanisms of action of Promoters; Auxins,. Cytokinins, Gibberellins, Brassinosteroids and inhibitors; Abscisic acid Jasmonic acid, Ethylene. Concepts of promotion & inhibitions. Stress Physiology : Type of stresses, Plant responses and mechanisms of tolerance of biotic and abiotic stresses; HR and SAR; Water deficit and drought resistance, Salinity stress; metal toxicity; freezing and heat stress; oxidative stress. Chem ical modulation and Biotechnological approaches for tolerance in plants. Molecular biology of stress tolerance, Genetic Engineering in stress tolerance. Concept of Pollutants fertilizer : N & S oxides. Membrane transport and translocation of water and solutes : Plantwater relations, mechanism of water transport, root-microbe interactions for nutrient uptake. Comparison of xylem and phloem transport, phloem loading and unloading, passive and active solute transport, Stomatal physiology. Sensory Photobiology : History, discovery and properties (photochemical and biochemical ) of phytochromes and crytochromes. Photophyisology of light- induced responses;cellular localization; molecular mechanisms of action of photomorphogenic receptors. Flowering Process : Photoperiodism and its significance, Endogenous clock and its regulation; Floral induction and its development : Role of vernalization.

SEMESTER - III BOT-112- Ecology Climate, Soil and Vegetation pattern of the world :Life zone; major biomes; and soil types of the world Concepts of community and continuum; Analysis of communities (analytical and synthetic characters); community coefficients; interspecfic association; concept of ecological niche. Vegetation Development : Temporal changes (cyclic); Ecological succession. Models and mechanisms of ecological succession- Relay floristic; facilitation; tolerance and inhibition models. Ecological organization : Structure and functions; Primary production - Methods of measurement, global pattern and controlling factors. Energy dynamics ; Energy flow ; pathways; ecological efficiency; food chain, food web and trophic levels; Ecological pyramids and recycling. Litter fall and decomposition : Mechanisms, substrate quality and climate factors associated with decomposition. Biogeochemical Cycles ; Mineral cycles in terrestrial and aquatic eco system ; H 2 O, Carbon, Nitrogen, Phosphorous and Sulpher cycles. 5 6 SYLLABUS SEMESTER - III BOT - 114 Plant Biotechnology-I Introduction : Basic concepts, princplies and scopes of Biotechnology. Plant tissue culture : General introduction; history; concept of cellular differentiation; totipotancy. Organogenesis and adventive embryogenesis; Fundamental aspects of morphogenesis. Somatic embryogenesis and androgenesis : Mechanisms, techniques and utility. Somatic hybridization : Protoplast isolation, fusion and culture; hybrid selection and regeneration. Possibilities, achievements and limitation of protoplast research. Application of plant tissue culture in : a. Clonal propagation b. Artificial seeds c. Production of hybrids and somaclones Application of plant tissue culture in : d. Production of secondary metabolites / natural products e. Cryopreservation and germplasm storage.

SEMESTER - III ENV - 115 Biostatistics and Computers Biostatistics : Graphical representation of data ; Analysis of variation; Analysis of frequencies; Measures of central tendency; variation coefficient of variation. Correlation and regression; Hypothesis testing; Experimental design and sampling theories Probabilities theory; t-test, F-test and X 2 test; Probability distributions and their properties. Non- parametric test :Sign test; Run & Median test; Wilcoxon Signed Rank Mannwhiteney test; Kruskal Wallis test. Computers : Components and functions; generations of computers; input and output devices ; types of memory; file manager; internet and its applications. Operating system and its evolution; system and application software; internal and external commands of DOS, UNIX WIN 98/ 2000/ XP; Office applications including MS- Word, MS-Excel, MS- Powerpoint. 7 8 SYLLABUS Bioinformatics : Introduction and uses of bioinformatics tools - a. BLAST b. FASTA c. Multiple sequence alignment - CLUSTAL-W d. MEDLINE & PubMED Retrieving and installing a programme (Tree Tool ) ; Searching Science Citation Index & current content ; Accessing full text Journal.

BOT - 116 Plant Metabolism SEMESTER - IV 9 10 SYLLABUS Photorespiration and its significance; C 4 cycle; CAM pathway; C2 cycle, biosynthesis of starch and sucrose. Respiration and lipid metabolism : Glycolysis; TCA cycle; Electron transport and ATP synthesis; Pentose phosphate pathway (PPP); Glyoxylate cycle; Structure, biosynthesis and functions of lipids; Catabolism of structural and storage lipids. Nitrogen fixation and N & S metabolism ; Overview; biological nitrogen fixation; nodule formation and factors; mechanism of nitrate uptake and reduction; ammonium assimilation; Sulfate uptake, transport and assimilation. Energy flow : Principles of thermodynamics ; free energy;chemical potential; redox reactions; Structure and functions of ATP. Fundamentals of enzymes; General aspects, allosteric mechanism, regulatory and active sites; isozymes; enzyme kinetics; Michaelis - Menten equation and its significance. Signal Transduction : Overview; receptors and G- proteins; phospholipids signaling; role of cyclic nucleotides; calcium- calmodulin cascade. Diversity in protein kinases and phosphatases, specific significance mechanisms - Two component system in bacteria and plants. Photochemistry and photosynthesis ; General concepts and histroical background evolution of photosynthesis apparatus; photosynthesis pigments and light harvesting complexes; photooxidation of water; Calvin cycle.

BOT - 117 Ecology-II SEMESTER - IV 11 12 SYLLABUS Biodiversity : Definition, Status : National & Global, Issues of Biodiversity. in-situ conservation : protected areas in India -Wildlife sanctuaries; National parks; Biosphere reserves; Wetlands; Mangroves; and Coral reefs. Biodiversity ex-situ conservation : Botanical gardens; Field gene banks; Seed banks; in vitro repositories; and Cryobanks N.B.P.G.R. Biological diversity : Concept; status in India; role of biodiversity in ecosystem functions and stability; hot spots; inventory; Speciation and extinction; IUCN categories of threat. Environmental education; information and environmental health; environmental status of plants based on IUCN. Air, Water an soil Pollution : Kinds; sources; quality parameters; effects on plants and ecosystem. Climate change : Greenhouse gases (CO 2 CH 4, N 2 O, CFCs); Ozone layer and hole ; Global warming. Ecosystem dynamics & management ; Major ecosystems; Stability and complexity of exosystem; Habitat ecology; Environmental impact assessment (EIA); ecosystem restoration. Ecological management : Concept sustainable development; sustainability indicators; Ecotourism and Biosafety; Remote sensing; Environmental problems in India.

BOT- 118 Plant Reproduction SEMESTER - IV 13 14 SYLLABUS Fruit growth : Dynamics of fruit growth; Biochemistry and molecular biology of fruit maturation. Dormancy : Importance and types of dormancy; seed dormancy; bud dormancy; overcoming seed dormancy. Male gametophyte ; Structure of anther; microsporogenesis; role of tapetum; pollen development and gene expression; male sterility. Female gametophyte ; Ovule development; megasporogenesis;organization of embryosac; structure of the embryo sac cells, Pollination - Mechanisms and vectors; pollen pistil interaction and fertilization. Breeding systems; structure of the pistil Self incompatibility - SSI and GSI ( cytological, biochemical and molecular aspects); Double fertilization; in-vitro fertilization. Seed development ; Endosperm development during early maturation and desiccation stages; embryogenesis - ultrastructure and nuclear cytology. Cell lineages during late embryo development; Storage proteins of endoperms and embryo; Polyembryony; Apomixis; Embryo culture.

SEMESTER - IV BOT- 119 Plant Biotechnology-II Recombinant DNA technology : Gene cloning - principles and techniques; Choice of vectors- plasmids, bacteriophage, phagemids and eukaryotic vectors. Construction of genomic and cdna libraries; DNA synthesis and sequencing. Genetic engineering of plants : Aims, Strategies for development of transgenic (with suitable examples) Agrobacteraium - the natural genetic engineer; Transposon mediated gene tagging. Chloroplast transformation and its utility; Intellectual property rights, possible ecological risks and ethical concerns. Microbial genetic manipulation; Bacterial transformation; selection of recombinants and transformants. Genetic improvements of industrial microbes and nitrogen fixer, fermentation technology. 15 16 SYLLABUS Genomics and Proteomics : Molecular markers for introgression of useful traits; Artificial chromosomes; High throughoput sequencing; genome project. Functional Genomics; Microarrays : Protein profilling and its significance; Application of genetic engineering in agriculture, health and industry.

SEMESTER - IV BOT - 120 Plant Pathology 17 18 SYLLABUS c. Smut of Bajra d. Late and early blight of potato Plant Disease : Causal organisms, symptoms and management of - e. Yellow vein mosaic of Bhindi f. Tikka disease of groundnut Fundamentals of plant pathology ;History of plant pathology ; Various levels of parasitism; Calssification of plant diseases. g. Bacterial blight of paddy h. Black rust of wheat i. Sandal spike. Defense Mechanism in plants ;Structural, Induced and Biochemical defense mecahnisms; Hypersensitivity reaction. Detoxification of pathogen toxing : Application of molecular biology in disease control strategies. Pathogenesis :Penetration and entry ofplant pathogens; development inside host tissue. Agents of plant diseases General chacarteristics and symptoms caused by - agents of infectious diseases (fungi, bacteria, mycoplasma, virus and nematodes ) and Agents of non- infectious diseases (air pollution, chemicals, minerals excess, temperature). Enzymes and toxins in plant diseases. Plant Disease : Causal organisms, symptoms and management ofa. Downy mildew of grapes. b. Karnal bunt of wheat

Maharshi Dayanand University Rohtak Ordinance, Syllabus and Courses of Reading for M.Sc. Botany (3 rd & 4 th Semester) Examination Session - 2009-2010 Available from : Price : Incharge (Publication) At the Counter : Rs. 50/- Maharshi Dayanand University By Regd. Parcel : Rs. 90/- Rohtak-124 001 (Haryana) By Ordinary Post : Rs. 75/-

MAHARSHI 21 DAYANAND UNIVERSITY ROHTAK SYLLABUS 22