Supplemental Table S1. Salmonella isolates included in study Allelic type for b Isolate a Serotype Source fima mdh manb Combined ST b ST/Serotype County c Farm fima Deletion e manb Dupli- subtype cation d S5-386 Thompson cattle 23 16 21 43 AP Livingston 905 No No S5-387 Muenster cattle 24 4 23 44 AQ Franklin 909 No No S5-419 Newport cattle 6 7 9 11 O Cortland 910 No No S5-420 Newport cattle 6 7 9 11 O Seneca 903 No No S5-424 Newport cattle 6 7 9 11 O St. Lawrence 204 No No S5-425* Muenster cattle 24 4 23 44 AQ Wyoming 259 No No S5-427 Oranienburg cattle 3 4 48 53 AZ Oneida 61 Yes No S5-428 Rough o:i:1,2 cattle 4 5 7 8 J Oswego 906 No No S5-429 Typhimurium cattle 4 5 5 6 I Cortland 911 No No S5-430 T. Copenhagen cattle 4 5 7 8 K Oswego 906 No No S5-431 Kentucky cattle 10 9 13 17 R Erie 901 No No S5-432 Muenster cattle 24 4 23 44 AQ Wyoming 907 No No S5-433 Typhimurium cattle 4 5 5 6 I Ontario 820 No No S5-436 Newport cattle 6 7 9 11 O Oneida 902 No No S5-437 Agona cattle 1 1 2 2 B Tompkins 908 No No S5-544 Newport cattle 6 7 9 11 O Oneida 228 No No S5-545 Newport cattle 6 7 9 11 O Wyoming 260 No No S5-546* Muenster cattle 24 4 23 44 AQ Wyoming 259 No No S5-547 Agona cattle 1 2 1 1 A Lewis 54 No No S5-548 Newport cattle 6 7 9 11 O Franklin, VT 303 No No S5-549 Havana cattle 37 23 51 69 BP Rensselaer 120 Yes No S5-550* T. Copenhagen cattle 4 5 7 8 K Cayuga 97 No No S5-551 Adelaide cattle 30 24 40 75 BT Washington 186 No No S5-552 Newport cattle 6 7 9 11 O Chittenden, VT 489 No No S5-553* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-554 T. Copenhagen cattle 4 5 7 8 K Cayuga 97 No No S5-555 Typhimurium cattle 4 5 5 6 I Tompkins 100 No No S5-556* Typhimurium cattle 4 5 5 6 I St. Lawrence 208 No No S5-557* Newport cattle 6 7 9 11 O Franklin, VT 303 No No S5-558* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-559 Montevideo cattle 3 6 4 9 M Wyoming 415 No No S5-560* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-561* Newport cattle 6 7 9 11 O Franklin, VT 488 No No
S5-562 Newport cattle 6 7 9 11 O Lamoille, VT 359 No No S5-564 Typhimurium cattle 4 5 5 6 I St. Lawrence 208 No No S5-565 Newport cattle 6 7 9 11 O Clinton 308 No No S5-566* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-567* Newport cattle 6 7 9 11 O Franklin, VT 488 No No S5-570 Bardo cattle 6 7 9 11 N Franklin, VT 488 No No S5-571* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-575* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-577* Newport cattle 6 7 9 11 O Franklin, VT 320 No No S5-578 Newport cattle 6 7 9 11 O Franklin, VT 320 No No S5-580* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-582* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-584* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-590* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-591* Newport cattle 6 7 9 11 O Chittenden, VT 490 No No S5-593* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-594 Newport cattle 6 7 9 11 O Clinton 524 No No S5-596 4,5,12:i:- cattle 4 5 5 6 G Clinton 524 No No S5-597* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-601 Newport cattle 6 7 9 11 O Franklin, VT 218 No No S5-602 Newport cattle 6 7 9 11 O Franklin, VT 300 No No S5-605* Newport cattle 6 7 9 11 O Clinton 524 No No S5-607 Typhimurium cattle 4 5 5 6 I Rensselaer 584 No No S5-610 Newport cattle 6 7 9 11 O Cayuga 163 No No S5-611 Newport cattle 6 7 9 11 O Niagara 510 No No S5-612 Newport cattle 6 7 9 11 O Erie 522 No No S5-615* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-617* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-618* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-619* Newport cattle 6 7 9 11 O Onondaga 152 No No S5-620 Typhimurium cattle 4 5 5 6 I Wyoming 415 No No S5-621 Newport cattle 6 7 9 11 O Wyoming 791 No No S5-622* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-623* Newport cattle 6 7 9 11 O Onondaga 152 No No S5-624 Newport cattle 6 7 9 11 O Franklin, VT 488 No No S5-625* Newport cattle 6 7 9 11 O Clinton 524 No No S5-626* Newport cattle 6 7 9 11 O Chittenden, VT 490 No No
S5-627* Newport cattle 6 7 9 11 O Chittenden, VT 490 No No S5-628 Newport cattle 6 7 9 11 O Chittenden, VT 490 No No S5-629* Newport cattle 6 7 9 11 O Niagara 510 No No S5-630 Montevideo cattle 3 6 4 9 M Washington 521 No No S5-631* Newport cattle 6 7 9 11 O Onondaga 152 No No S5-715 Newport cattle 6 7 9 11 O Lewis 438 No No S5-722* Newport cattle 6 7 9 11 O Cayuga 163 No No S5-725* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-729 Typhimurium cattle 4 5 5 6 I Washington 804 No No S5-730* Newport cattle 6 7 9 11 O Niagara 510 No No S5-732 Newport cattle 6 7 9 11 O Onondaga 152 No No S5-734 Infantis cattle 19 13 44 60 BG Cayuga 163 Yes No S5-737* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-739 Newport cattle 6 7 9 11 O Niagara 827 No No S5-740* Newport cattle 6 7 9 11 O Niagara 510 No No S5-743* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-744 Typhimurium cattle 4 5 5 6 I Wyoming 261 No No S5-746* Newport cattle 6 7 9 11 O Niagara 510 No No S5-747 Typhimurium cattle 4 5 5 6 I Wyoming 691 No No S5-748* Agona cattle 1 1 2 2 B Rensselaer 584 No No S5-750* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-752* Newport cattle 6 7 9 11 O Niagara 510 No No S5-757 Montevideo cattle 3 6 4 9 M Livingston 329 No No S5-758* Newport cattle 6 7 9 11 O Niagara 510 No No S5-759* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-760* Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-761 Thompson cattle 23 16 45 62 BI Niagara 679 Yes No S5-762* Newport cattle 6 7 9 11 O Niagara 510 No No S5-765 Thompson cattle 23 16 45 62 BI Livingston 329 Yes No S5-766* Newport cattle 6 7 9 11 O Clinton 524 No No S5-776 Newport cattle 6 7 9 11 O Niagara 637 No No S5-777* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-780* Newport cattle 6 7 9 11 O Niagara 510 No No S5-782* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-784 Typhimurium cattle 4 5 5 6 I Clinton 764 No No S5-785* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-786 T. Copenhagen cattle 4 5 7 8 K Washington 225 No No
S5-788 Typhimurium cattle 36 5 5 49 AV Niagara 904 No No S5-789 Muenster cattle 24 4 23 44 AQ Orleans 853 No No S5-790 4,12:i:- cattle 4 5 5 6 F Cattaraugus 680 No No S5-796 Typhimurium cattle 4 5 7 8 L Chenango 105 No No S5-797* Typhimurium cattle 4 5 7 8 L Washington 186 No No S5-798* Muenster cattle 24 4 23 44 AQ Livingston 329 No No S5-799 Typhimurium cattle 4 5 5 6 I Genesee 821 No No S5-800 T. Copenhagen cattle 4 5 7 8 K Washington 186 No No S5-805 Typhimurium cattle 4 5 5 6 I Orleans 826 No No S5-808* Newport cattle 6 7 9 11 O Niagara 510 No No S5-816 4,5,12:i:- cattle 4 5 5 6 G Niagara 510 No No S5-820* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-822* Kentucky cattle 10 9 13 17 R Wyoming 261 No No S5-829* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-831 Typhimurium cattle 4 5 5 6 I Wyoming 837 No No S5-833* Newport cattle 6 7 9 11 O Niagara 510 No No S5-836 Bardo cattle 6 7 9 11 N Genesee 838 No No S5-838* Muenster cattle 24 4 23 44 AQ Livingston 329 No No S5-839 Infantis cattle 19 13 44 60 BG Saratoga 223 Yes No S5-840* Kentucky cattle 10 9 13 17 R Wyoming 261 No No S5-841* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-842 Newport cattle 6 7 9 11 O Chenango 105 No No S5-845* Typhimurium cattle 4 5 5 6 I Clinton 764 No No S5-846* Newport cattle 6 7 9 11 O Niagara 510 No No S5-864* Kentucky cattle 10 9 13 17 R Wyoming 261 No No S5-865* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-867 Agona cattle 1 1 2 2 B Allegany 599 No No S5-868 Muenster cattle 24 4 23 44 AQ Wyoming 259 No No S5-872 Agona cattle 1 1 2 2 B Rensselaer 584 No No S5-873* Kentucky cattle 10 9 13 17 R Wyoming 261 No No S5-876* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-879* Newport cattle 6 7 9 11 O Niagara 510 No No S5-882* Newport cattle 6 7 9 11 O Niagara 510 No No S5-887* Newport cattle 6 7 9 11 O Niagara 510 No No S5-889 Kentucky cattle 10 9 13 17 R Wyoming 261 No No S5-891 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-896 Typhimurium cattle 4 5 5 6 I Rensselaer 318 No No
S5-903* Newport cattle 6 7 9 11 O Niagara 510 No No S5-910* Newport cattle 6 7 9 11 O Niagara 510 No No S5-914* Newport cattle 6 7 9 11 O Niagara 510 No No S5-916 Typhimurium cattle 4 5 7 8 L Washington 186 No No S5-917 Muenster cattle 24 4 23 44 AQ Livingston 329 No No S5-920* Newport cattle 6 7 9 11 O Niagara 510 No No S5-924* 4,5,12:i:- cattle 4 5 5 6 G Wyoming 261 No No S5-931* Typhimurium cattle 4 5 5 6 I Rensselaer 125 No No S5-933 Typhimurium cattle 4 5 5 6 I Clinton 243 No No S5-936 Typhimurium cattle 4 5 5 6 I Rensselaer 125 No No S5-938* Newport cattle 6 7 9 11 O Niagara 510 No No S5-947 Mbandaka catlle 27 27 58 65 BL Lewis 11 Yes No S5-369 Saintpaul human 18 1 19 38 AK Monroe No No S5-370 Typhimurium human 4 5 5 6 I Chautauqua No No S5-371 Enteritidis human 8 1 3 14 Q Erie No No S5-373 Braenderup human 20 14 61 61 BH Westchester Yes No S5-374 4,5,12:i:- human 21 15 20 40 AM Monroe No No S5-375 Typhimurium human 4 5 5 6 I Kings No No S5-376 Enteritidis human 8 1 3 14 Q Nassau No No S5-377 Enteritidis human 8 1 3 14 Q Nassau No No S5-378 1,7:-:1,5 human 22 16 21 42 AO Nassau No No S5-379 Panama human 17 4 22 37 AJ Suffolk No No S5-380 Litchfield human 3 17 9 31 AC Niagara No No S5-381 Typhimurium human 4 5 5 6 I Washington No No S5-382 Montevideo human 3 6 52 57 BD Chautauqua Yes No S5-383 Heidelberg human 2 3 3 3 D Dutchess No No S5-388 Urbana human 3 4 46 52 AY Schenectady Yes No S5-389 4,5,12:i:- human 4 5 5 6 G Erie No No S5-390 4,5,12:i:- human 4 5 5 6 G Monroe No No S5-391 Kintambo human 7 18 55 59 BF Westchester Yes No S5-392 Typhimurium human 4 5 5 6 I Westchester No No S5-393 Newport human 6 7 9 11 O Putnam No No S5-394 Typhimurium human 4 5 5 6 I Dutchess No No S5-395 Javiana human 12 6 16 19 T Richmond No No S5-396 Newport human 6 7 9 11 O Suffolk No No S5-397 Typhimurium human 4 5 5 6 I St. Lawrence No No S5-398 4,5,12:i:- human 4 5 5 6 G Westchester No No
S5-399 Hadar human 21 19 24 41 AN Tompkins No No S5-400 4,5,12:i:- human 4 5 5 6 G Erie No No S5-401 Muenster human 24 4 23 44 AQ Chemung No No S5-402 Enteritidis human 8 1 3 14 Q Unknown No No S5-404 Paratyphi C human 43 20 25 80 BY Monroe No Yes S5-405 Saintpaul human 18 1 19 38 AK Monroe No No S5-406 Javiana human 15 6 16 21 U Bronx No No S5-407 Dublin human 16 1 3 23 V Orange No No S5-408 Stanley human 45 11 30 84 CC Niagara No Yes S5-409 4,5,12:i:- human 4 5 5 6 G Erie No No S5-410 Urbana human 3 4 46 52 AY Schenectady Yes No S5-411 Thompson human 23 16 45 62 BI Wayne Yes No S5-412 Thompson human 23 16 45 62 BI Saratoga Yes No S5-413 Newport human 6 7 9 11 O Chenango No No S5-414 Enteritidis human 8 1 3 14 Q Erie No No S5-415 Enteritidis human 8 1 3 14 Q Broome No No S5-416 Enteritidis human 8 1 26 36 AH Albany No No S5-417 Agbeni human 25 21 60 63 BJ Albany Yes No S5-438 Weltvreden human 42 1 27 79 BX Monroe No Yes S5-439 Dublin human 16 1 3 23 V Suffolk No No S5-440 Heidelberg human 2 3 3 3 D Franklin No No S5-441 Abony human 26 22 28 45 AR Monroe No No S5-442 Poona human 3 4 57 55 BB Onondaga Yes No S5-443 Enteritidis human 8 1 3 14 Q Dutchess No No S5-444 Enteritidis human 8 1 26 36 AH Tompkins No No S5-445 Enteritidis human 8 1 3 14 Q Suffolk No No S5-446 Newport human 6 7 9 11 O Saratoga No No S5-447 Paratyphi B var. Java human 3 18 29 32 AD Erie No No S5-448 Heidelberg human 2 3 3 3 D Erie No No S5-449 Newport human 6 7 9 11 O Unknown No No S5-450 Thompson human 23 16 45 62 BI Ulster Yes No S5-451 Mbandaka human 27 27 49 64 BK Oneida Yes No S5-452 Typhimurium human 4 5 5 6 I Nassau No No S5-453 Arechavaleta human 17 4 22 37 AI Nassau No No S5-454 Panama human 17 4 22 37 AJ Chenango No No S5-455 Heidelberg human 2 3 3 3 D Monroe No No S5-456 Schwarzengrund human 3 4 4 4 E Orleans No No
S5-458 Schwarzengrund human 3 4 4 4 E Orleans No No S5-459 Enteritidis human 8 1 26 36 AH Erie No No S5-460 Enteritidis human 8 1 3 14 Q Monroe No No S5-461 Enteritidis human 8 1 26 36 AH Delaware No No S5-462 Typhimurium human 4 5 5 6 I Suffolk No No S5-464 Stanley human 21 11 30 39 AL Nassau No No S5-465 Poona human 3 4 31 28 Z Nassau No No S5-466 4,12:r:- human 2 3 3 3 C Nassau No No S5-467 Enteritidis human 8 1 3 14 Q Kings No No S5-468 Paratyphi B var. Java human 3 18 29 32 AD Bronx No No S5-469 Abony human 26 22 28 45 AR Monroe No No S5-470 Montevideo human 32 6 59 67 BN Nassau Yes No S5-472 Thompson human 23 16 45 62 BI Nassau Yes No S5-473 Typhimurium human 4 5 5 6 I Suffolk No No S5-474 Montevideo human 3 6 47 56 BC Suffolk Yes No S5-475 Heidelberg human 2 3 3 3 D Nassau No No S5-476 Typhimurium human 4 5 5 6 I Suffolk No No S5-477 Rublislaw human 3 4 50 54 BA Orleans Yes No S5-478 Montevideo human 3 6 47 56 BC Suffolk Yes No S5-479 Muenchen human 7 15 32 35 AG Suffolk No No S5-480 Heidelberg human 2 3 3 3 D New York No No S5-481 Pomona human 3 4 33 29 AA Erie No No S5-482 4,12:r:- human 2 3 3 3 C Suffolk No No S5-483 Enteritidis human 8 1 26 36 AH Westchester No No S5-484 Schwarzengrund human 3 4 4 4 E Onondaga No No S5-485 Saintpaul human 18 1 19 38 AK Erie No No S5-486 Enteritidis human 8 1 3 14 Q Onondaga No No S5-487 Give human 3 4 34 30 AB Unknown No No S5-488 Typhimurium human 4 5 5 6 I Westchester No No S5-489 Newport human 31 5 11 76 BU Suffolk No No S5-490 Worthington human 33 3 62 68 BO Warren Yes No S5-491 Heidelberg human 2 4 3 26 X Suffolk No No S5-492 Typhimurium human 4 5 5 6 I Orange No No S5-493 Typhimurium human 34 5 5 47 AT Suffolk No No S5-494 Typhimurium human 4 5 5 6 I Bronx No No S5-495 Heidelberg human 2 3 3 3 D Suffolk No No S5-496 Enteritidis human 8 1 26 36 AH Monroe No No
S5-497 Enteritidis human 8 1 3 14 Q Monroe No No S5-498 4,5,12:i:- human 4 5 5 6 G Nassau No No S5-499 Paratyphi B human 35 18 35 48 AU Nassau No No S5-500 Panama human 12 6 16 19 CF Nassau No No S5-501 Typhimurium human 4 5 5 6 I Nassau No No S5-502 Berta human 45 1 3 82 CA Nassau No Yes S5-503 Newport human 6 7 36 33 AE Genesee No No S5-504 Muenchen human 29 11 32 74 BS Suffolk No No S5-505 Typhimurium human 4 5 5 6 I Steuben No No S5-506 Infantis human 19 13 44 60 BG Kings Yes No S5-507 Typhimurium human 4 5 5 6 I Nassau No No S5-508 Enteritidis human 8 1 26 36 AH Nassau No No S5-509 Typhimurium human 4 5 5 6 I Washington No No S5-510 Hartford human 40 18 37 77 BV Washington No No S5-511 Typhimurium human 4 5 5 6 I Chemung No No S5-512 Saintpaul human 44 1 38 81 BZ Monroe No Yes S5-513 Newport human 31 8 11 46 AS Franklin No No S5-514 Enteritidis human 8 1 3 14 Q Suffolk No No S5-515 Newport human 6 7 9 11 O Niagara No No S5-516 Typhimurium human 4 5 5 6 I Otsego No No S5-517 Agona human 1 2 1 1 A Suffolk No No S5-518 Newport human 6 7 9 11 O Wayne No No S5-519 Mbandaka human 27 27 39 73 BR Erie No No S5-520 Typhimurium human 4 5 5 6 I Steuben No No S5-521 Mbandaka human 27 27 39 73 BR Erie No No S5-522 Enteritidis human 8 1 3 14 Q Westchester No No S5-523 Thompson human 23 16 21 43 AP Schenectady No No S5-524 Newport human 41 8 11 78 BW Herkimer No Yes S5-525 Newport human 6 7 9 11 O Westchester No No S5-526 4,5,12:i:- human 4 5 5 6 G Suffolk No No S5-527 4,5,12:i:- human 4 5 5 6 G Onondaga No No S5-528 Enteritidis human 8 1 3 14 Q Erie No No S5-529 Anatum human 6 12 18 86 W Erie No No S5-530 Anatum human 6 12 18 86 W Erie No No S5-531 Typhimurium human 4 5 6 7 CE Steuben No No S5-532 Typhimurium human 4 5 5 6 I Cortland No No S5-533 Infantis human 19 13 44 60 BG Saratoga Yes No
S5-534 Typhimurium human 4 5 5 6 I Albany No No S5-535 Typhimurium human 4 5 5 6 I Suffolk No No S5-536 Typhimurium human 36 5 5 49 AV Jefferson No No S5-537 Newport human 6 7 36 33 AE Erie No No S5-538 Enteritidis human 8 1 3 14 Q Nassau No No S5-539 Enteritidis human 8 1 3 14 Q Onondaga No No S5-540 Anatum human 6 12 18 86 W Erie No No S5-541 Newport human 6 7 9 11 O Ulster No No S5-542 1,7:-:1,5 human 23 16 21 43 CG Dutchess No No S5-543 Hadar human 21 19 24 41 AN Dutchess No No S5-632 Cubana human 7 28 56 71 BQ Erie Yes No S5-633 Typhimurium human 4 5 5 6 I Onondaga No No S5-635 4,5,12:i:- human 4 5 5 6 G Suffolk No No S5-636 Muenchen human 29 11 32 74 BS Saratoga No No S5-637 Berta human 45 29 3 83 CB Oneida No Yes S5-639 Newport human 41 8 11 78 BW Orange No Yes S5-640 Typhimurium human 4 5 5 6 I Franklin No No S5-641 Enteritidis human 8 1 3 14 Q Westchester No No S5-642 Oranienburg human 3 4 48 53 AZ Nassau Yes No S5-643 Newport human 7 8 11 13 P Nassau No No S5-645 Enteritidis human 8 1 3 14 Q Orange No No S5-646 Adelaide human 30 24 40 75 BT Albany No No S5-647 Agona human 1 2 1 1 A Bronx No No S5-648 Blockley human 2 25 43 27 Y Kings No No S5-649 Saintpaul human 18 1 19 38 AK Bronx No No S5-650 Newport human 31 8 11 46 AS Suffolk No No S5-651 Newport human 41 8 11 78 BW Onondaga No Yes S5-652 Javiana human 15 6 16 21 U Erie No No S5-653 Typhimurium human 4 5 5 6 I Suffolk No No S5-654 Nyanza human 28 26 54 66 BM Onondaga Yes No S5-655 Heidelberg human 2 3 3 3 D Oneida No No S5-656 4,5,12:i:- human 4 5 5 6 G Westchester No No S5-657 Mbandaka human 27 27 49 64 BK Onondaga Yes No S5-658 Senftenberg human 11 4 15 18 S Suffolk No No S5-659 Urbana human 3 4 46 52 AY Clinton Yes No S5-660 Urbana human 3 4 46 52 AY Clinton Yes No S5-661 Urbana human 3 4 46 52 AY Schenectady Yes No
S5-662 1,7:-:1,5 human 4 27 53 58 BE Allegany Yes No S5-663 Typhimurium human 4 5 5 6 I Tompkins No No S5-664 Heidelberg human 38 3 3 50 AW Suffolk No No S5-665 Javiana human 12 6 16 19 T Nassau No No S5-666 4,5,12:i:- human 4 5 5 6 G Warren No No S5-667 Agona human 1 2 1 1 A Suffolk No No a Isolate designations followed by a * indicate bovine isolates not counted when calculating Chi square values and Fisher's exact test values. Only one representative isolate of each unique serotype/st combination per farm was used in the calculations b MLST and allelic types were assigned to be consistent with Alcaine et al. AAC 2005. 49:4061-7 c All counties are in New York State, except for a small number of animal isolates from Vermont; for these isolates the county is followed by the state designation for Vermont (VT) d Indicates isolates which have two manb gene copies e Indicates isolates that have 3 bp or 5 bp deletions in the 3' region of the fima gene