Supplementary Information. Omnidispersible Hedgehog Particles with Multilayer Coatings for. Multiplexed Biosensing

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Supplementary Information Omnidispersible Hedgehog Particles with Multilayer Coatings for Multiplexed Biosensing Douglas G. Montjoy 1, Joong Hwan Bahng 1,2, Aydin Eskafi 1, Harrison Hou 1, Nicholas A. Kotov 1-4 1 Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA; 2 Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA; 3 Department of Materials Science, University of Michigan, Ann Arbor, Michigan 48109, USA; 4 Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan 48109, USA; *E-mail: kotov@umich.edu S1

Abbreviations SEM Scanning Electron Microscopy TEM Transmission Electron Microscopy LBL Layer-by-Layer PSS Polystyrene Sulfonate PDDA Poly (diallyldimethylammonium chloride) PAH Poly (allylamine hydrochloride) PAA Polyacrylic acid FITC-PAH Fluorescein isothiocyanate labeled Poly(allylamine hydrochloride) NP Nanoparticle HP Hedgehog particle Au 1 HP Hedgehog particles modified with PSS(PDDA/Au NP ) Au 2 HP Hedgehog particles modified with PSS(PDDA/Au NP ) 2 Hedgehog particles modified with PSS/PDDA/Au NP ) (0.5 M Au 1 -SHP NaCl) Hedgehog particles modified with PSS/PDDA/Au NP - Au 2 -SHP small/pss/pdda/au NP -large) (0.5 M NaCl) Bead Carboxylated Polystyrene Bead Au-SBead Beads modified with (PDDA/Au NP ) (0.5 M NaCl) Beads modified with (PDDA/Au NP -small/pss/pdda/au NP -large) Au 2 -SBead (0.5 M NaCl) AuBead Gold-modified polystyrene bead MB Methylene Blue R6G Rhodamine 6G DMEM Dulbecco's Modified Eagle Medium TSB Tryptic Soy Broth AuNS Gold Nanostar(s) PEG-SH Thiol-Polyethylene glycol-amine MBA 4-Mercaptobenzoic Acid S2

Supplementary Results a b c d e f Supplementary Figure S1: SEM and TEM images of HPs modified with (PSS/PDDA) n films: (a,e) (PSS/PDDA) 2, (b,f) (PSS/PDDA) 3 PSS, and (c,g) (PSS/PDDA) 5. S3

a b c d Supplementary Figure S2: (a,c) TEM and (b,d) STED images of HPs modified with (a,b) (PSS/FITC-PAH) 2 and (c,d) (PAA/FITC-PAH) 2. S4

a b Supplementary Figure S3: (a) SEM and (b) TEM images of HPs coated with (PAA/PAH) 5. Closing of the gaps between the spikes can be observed. S5

a b a b c c Supplementary Figure S4: TEM images of (a) citrate-stabilized small AuNPs and (b) citratestabilized large AuNPs. (c) photographs of dispersions of AuNPs with increasing NaCl concentration from left to right: 0 M, 0.1 M, and 1 M. S6

Supplementary Figure S5: HPs after incubation with small Au NPs for 20 minutes without any polyelectrolyte LBL films to promote adhesion. S7

Supplementary Figure S6: Au NPs (eightfold dilution) before and after incubation with HPs. Supernatant concentrations were calculated using size and absorbance spectra. 1 AuHP, Au 2 HP, and Au-SHP contained 12, 27, and 43 picomoles AuNP per mg HP, respectively. Au 2 -SBeads contained 41 picomole AuNP per mg Bead and 3.9 picomole large AuNP per mg bead. Au 2 -SHP contained 2.7 picomole large AuNP per mg HP. S8

ζ- Potential (mv) 50 40 30 20 10 0-10 -20-30 0 1 2 3 Bilayer Number PSS/(PDDA/AuNP)n (0.5 M NaCl) Supplementary Figure S7: ζ-potential dependence on bilayer number for PSS (PDDA/Au NP ) n (0.5 M NaCl) films on HPs. A much smaller drop in zeta potential is observed for adsorption of AuNPs on the second bilayer compared to (PSS/PDDA/Au NP ) n (0.5 M NaCl) LBL films. S9

Supplementary Figure S8: SEM image of Au 2 -SBead S10

Absorbance (a.u.) a b c 1.0 MBA PEG-SH 0.8 0.6 0.4 0.2 0.0 200 400 600 800 1000 Wavelength (nm) Supplementary Figure S9: TEM images of (a) AuNS capped with PEG-SH ligand and (b) AuNS capped with MBA ligand. (c) Normalized absorbance spectra of AuNS with different ligands. S11

a AuHP Au 2 HP Au-SHP b AuHP Au 2 HP Au-SHP c d e f g h Supplementary Figure S10: Photographs of dispersion of LBL-modified HPs (concentration 0.25 mg/ml) in (a) water and (b) 0.1 M NaCl from left to right: AuHP, Au 2 HP, Au-SHP. Confocal with blue fluorescent core of dispersed (c) AuHP, (d) Au 2 HP, (e) Au-SHP in water. SEM images of (f) AuHP, (g) Au 2 HP, (h) AuHP-S in water. S12

a b c d e f Supplementary Figure S11: SEM and confocal microscopy with blue fluorescent core HPs of (a,d) AuHP, (b,e) Au 2 HP, and (c,f) HP dispersed in heptane. \ S13

a b c d Supplementary Figure S12: Photographs of dispersions of (a) AuHP, (b) Au 2 HP, (c) Au-SHP, (d) Au-SBead in heptane (0.25 mg/ml). S14

a b c d Supplementary Figure S13: Photographs of dispersions of LBL-modified and non-modified HPs in heptane from left to right: HPs, AuHP, Au 2 HP, Au-SHP, Au 2 -SHP: 1 mg/ml (a).75 mg/ml (b).5 mg/ml (c).25 mg/ml (d). S15

a b c d e Supplementary Figure S14: Photographs of dispersion of coated and non-coated HPs in heptane (0.75 mg/ml): HP (a), AuHP (b), Au 2 HP (c), Au-SHP (d), and Au 2 -SHP (e). S16

a b Supplementary Figure S15: Confocal microscopy images of dispersed bright blue fluorescent core AuHPs (a) and Au 2 HPs (b) in 1 M NaCl. S17

V(K b T) a 40 b AuNS-MBA AuNS-MBA 0.1 M NaCl 20 0 0 2 4 6 8 10 d(nm) -20-40 Supplementary Figure S16: (a) AuNS capped with MBA dispersed in water at a concentration of 0.1 mg/ml: images from left to right: water, 0.1 M NaCl, 1 M NaCl. (b) DLVO pair potential of AuNS in water and 0.1 M NaCl. S18

V(K b T) a b 40 c AuNS-MBA 20 0 0 2 4 6 8 10 d(nm) -20-40 Supplementary Figure S17: Images of AuNS capped with (a) PEG-SH and (b) MBA in heptane at a concentration of 0.2 mg/ml. (c) DLVO pair potential of AuNS dispersed in heptane. S19

a b c d e f Water 1 M Salt Heptane Supplementary Figure S18: Confocal microscopy images of bright blue fluorescent core Au 2 - SHP in (a) water, (b) 1 M NaCl, and (c) heptane. SEM of Au 2 -SHP in (d) water and (e) heptane. (f) image of dispersions (0.25 mg/ml) of Au 2 -SHP from left to right: water, 1 M NaCl, and heptane. S20

Intensity (a.u.) Additional Raman Scattering Results All Raman experiments with coated HPs/Beads utilized a concentration of 2 nm of small AuNPs (12 ±1 nm). The concentration of larger AuNPs (39 ± 9 nm) with coated HPs/Beads was 0.01 nm for HPs and 0.0122 nm for Beads. 50000 40000 HPMB-6 Water AuNPMB-6 MB-6 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S19: Background corrected control Raman scattering spectra with MB concentration of 1 µm. S21

Intensity (a.u.) 50000 40000 Au 2 -SHP Au 2 -SBead AuNS 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S20: Background corrected control Raman spectra with no dyes. S22

Intensity (a.u.) 900000 800000 700000 3 M NaCl 2 M NaCl 1 M NaCl 0 M NaCl 600000 500000 400000 300000 200000 100000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S21: Background corrected Raman spectra of Au 2 -SHP with MB concentration of 1 µm and various NaCl concentrations. S23

Intensity (a.u.) 90000 80000 15min 5min 1min 70000 60000 50000 40000 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S22: Background corrected Raman spectra of Au 2 -SHP with MB concentration of 1 µm with various incubation times. S24

Intensity (a.u.) 200000 Au 2 -SHP Au 2 -SBead 150000 100000 50000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S23: Background corrected Raman scattering spectra with MB and R6G concentration of 1 µm in water. S25

Intensity (a.u.) Intensity (a.u.) 180000 160000 140000 Au 2 -SHP Au 2 -SBead AuNS 250000 200000 Au 2 -SHP Au 2 -SBead AuNS 120000 100000 150000 80000 100000 60000 40000 50000 20000 0 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber(cm -1 ) 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S24: Background corrected Raman scattering spectra obtained with different SERS probes given in the graphs with MB concentration of 1 µm in DMEM (left) and TSB (right). S26

Intensity (a.u.) Intensity (a.u) 25000 Au 2 -SHP Au 2 -SBead 20000 Au 2 -SHP Au 2 -SBead 20000 15000 15000 10000 10000 5000 5000 0 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S25: Background corrected Raman scattering spectra with R6G concentration of 1 µm in DMEM (left) and TSB (right). S27

Intensity (a.u.) 70000 60000 Water TSB DMEM 50000 40000 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S26: Background corrected Raman scattering spectra of AuNS stabilized with PEG-SH with R6G concentration of 1 µm in water, TSB, and DMEM. S28

Intensity (a.u.) 40000 DMEM TSB 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S27: Background corrected Raman scattering spectra of AuNS stabilized with PEG-SH with R6G and MB concentration of 1 µm in DMEM and TSB. S29

Intensity (a.u.) 70000 TSB DMEM Water 60000 50000 40000 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S28: Background corrected Raman scattering spectra with MB concentration of 20 µm (TSB/DMEM) and 10 µm (water). S30

Intensity (a.u.) 70000 60000 TSB DMEM Water 50000 40000 30000 20000 10000 0 400 600 800 1000 1200 1400 1600 1800 Wavenumber (cm -1 ) Supplementary Figure S29: Background corrected Raman scattering spectra with R6G concentration of 1 mm. S31

Calculations of pair potentials for AuNS using DLVO theory The DLVO Interaction potential between AUNS was approximated using the following expression: V DLVO = V VdW + V DL Where V VdW is the van der Waals interaction potential and V DL is the electrostatic double layer interaction potential. The van der Waals attraction and electrostatic repulsion between the AuNS were analyzed using a core-shell approach. Nanostars were analyzed with a model AuNS with branches (N) with a branch base length (L b ), tip diameter (D t ), branch length (L a ), and sidewall length (L s ) and a gold core with diameter D c according to Vo-Dinh et al. 2 For the core-shell approach, a gold core equivalent to D c and a shell with a homogeneous distribution of gold and solvent based on the number and dimensions of the branches was used.. The overall diameter and branch dimensions were used to determine the volume fraction of gold present φg in the shell. AuNS were analyzed as a frustum of a right circular cone with a spherical tip. V c = π 12 (D T 2 + L b D t + L b 2 )(L a D T 2 ) φ g = N(V c + πd 3 t 12 ) πd s 3 6 πd c 6 Where V c is the volume of the frustum of a right circular cone representing the volume of the branch of the AuNS and D s refers to the overall spherical diameter encompassing the full nanostar (hydrodynamic size was used as an estimate for this diameter). Van der Waals Potential The van der Waals potential of the AuNS was approximated as additive contributions of London dispersion forces between a spherical gold core capped with a shell consisting of solvent/gold. V VdW = V VdW,shell + V VdW,core + V VdW,core shell + V VdW,shell core V VdW,shell = A 232H shell (x, y) 12 V VdW,core = A 131H core (x, y) 12 x = d (D c + 2L a ), y = 1 x = d + 2L a D c, y = 1 V VdW,core shell = A 132H core shell (x, y) : x = d + L a, y = D c + 2L a 12 D c D c S32 3

V VdW,shell core = A 132H shell core (x, y) 12 x = d + L a D c + 2L a, y = D c D c + 2L a The Hamaker function 3 of the core-shell is given by H(x, y) = y (x 2 +xy+x) + y + 2ln [ (x2 +xy+x) ] (x 2 +xy+x+y) (x 2 +xy+x+y) L a represents the thickness of the shell layer (length of the nanostar branches). A 131 = 3 10 19 J (Hamaker constant for gold-water-gold interaction) 4. A 33 = 3.72 10 19 (Hamaker constant for water) 8 A 132 = A 131 φ g + (1 φ g )A 33 A 232 = A 131 A 33 For heptane calculations: A 33 = 4.03 10 19 (Hamaker constant for heptane) 5 Electrostatic potential The electrostatic interactions between the AuNS can be evaluated using the Poisson-Boltzmann formalism as follows 6 V DL = 4πε 0 ε r D 2 s Γ 2 ( k bt exp ( κd) )2 e d + 2D s Γ = 8 tanh( eψ Auns 4k b T ) 1 + 1 2κD s + 1 (κd s + 1) 2 tanh eψ Auns 4k b T Where ε0 is the permittivity of vacuum, εr is the dielectric constant of water, e is electric charge (C) and ΨAuns is the ζ-potential of AuNS coated with MBA in water (experimentally measured ΨAuns =-35 mv). κ represents the reciprocal double layer thickness and is given by κ = 1000N Ae 2 ε 0 ε r k b T Σ im i xz i 2 where N a is Avogadro s number, M i and Z i are the molar concentration and valency of ions. The practical Debye length of water was taken as κ -1 =100nm. 7 For heptane a Debye length of 960 nm was assumed based on that of pure water due to minimal presence of ions. 9 S33

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