Self-interacting Domains in the C Terminus of a Cation-Cl Cotransporter Described for the First Time*

Transcription

1 THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 279, No. 39, Issue of September 24, pp , by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Self-interacting Domains in the C Terminus of a Cation-Cl Cotransporter Described for the First Time* Received for publication, June 10, 2004, and in revised form, July 26, 2004 Published, JBC Papers in Press, July 27, 2004, DOI /jbc.M Charles F. Simard, Geneviève M. Brunet, Nikolas D. Daigle, Valérie Montminy, Luc Caron, and Paul Isenring From the Nephrology Research Group, Department of Medicine, Faculty of Medicine, Laval University, Québec, Québec G1R 2J6, Canada The first isoform of the Na -K -Cl cotransporter (NKCC1), a widely distributed member of the cation-cl cotransporter superfamily, plays key roles in many physiological processes by regulating the ion and water content of animal cells and by sustaining electrolyte secretion across various epithelia. Indirect studies have led to the prediction that NKCC1 operates as a dimer assembled through binding domains that are distal to the amino portion of the carrier. In this study, evidence is presented that NKCC1 possesses self-interacting properties that result in the formation of a large complex between the proximal and the distal segment of the cytosolic C terminus. Elaborate mapping studies of these segments showed that the contact sites are dispersed along the entire C terminus, and they also led to the identification of a critical interacting residue that belongs to a putative forkhead-associated binding domain. In conjunction with previous findings, our results indicate that the uncovered interacting domains are probably a major determinant of the NKCC1 conformational landscape and assembly into a high order structure. A model is proposed in which the carrier could alternate between monomeric and homo-oligomeric units via chemical- or ligand-dependent changes in conformational dynamics. Cation-Cl cotransporters (CCCs) 1 belong to an important family of transport systems that couple the movement of Cl to that of Na and/or K across cell surfaces (1 4). One of the first CCCs identified was the secretory Na -K -Cl cotransporter (5), also called NKCC1. Since then, six other family members have been identified: the renal Na -K -Cl cotransporters (6), the Na -Cl cotransporter (7), and the K -Cl * This work was supported by grants from the Canadian Institute of Health and Research (Grant MT-15405) and the Kidney Foundation of Canada. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. Both authors contributed equally to this work. A CIHR clinician scientist II. To whom correspondence should be addressed: L Hôtel-Dieu de Québec Research Center, 10 Rue McMahon (Room 3852), Québec, Québec G1R2J6 Canada. Tel.: (ext ); Fax: ; paul.isenring@crhdq.ulaval.ca. 1 The abbreviations used are: CCC, cation-cl cotransporter; KCC, K -Cl cotransporter; NCC, Na -Cl cotransporter; NKCC, Na -K - Cl cotransporter; ADH, anti-diuretic hormone; AMP R, ampicilline resistance gene; DEL, truncated; GST, glutathione S-transferase, GS, glutathione-coupled Sepharose; HA, hemagglutinin; hu, human; MCS, multiple cloning site; op, operator; P n, position; Y, EGY48 yeast; Yop, EGY48 yeast transformed with the p8op-lacz reporter plasmid; Ab, antibody; X-gal, 5-bromo-4-chloro-3-indolyl- -D-galactopyranoside; Tricine, N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine. This paper is available on line at cotransporters (8 11) called NKCC2, NCC, and KCCs, respectively. The CCC family also includes carrier-like molecules for which no ionic substrates have been identified to date; they are called orphan CCCs (12). The main function of a CCC is to regulate the ion or volume content of individual cells and to facilitate salt movement across various epithelia (1, 4); CCCs may play accessory roles in acid base balance or regulation of cell ph by transporting NH 4 at the K site or by modulating intracellular [Cl ] (13, 14). The activity of these proteins is tightly modulated through interactions with regulatory enzymes (15 20) and with cytoskeletal elements (21, 22). The best example studied thus far is the phosphorylation-dependent activation of NKCC1, a ubiquitous CCC that is expressed basolaterally in polarized cells (1 4, 23) The CCCs exhibit a common structure, illustrated in Fig. 1A below by a hydropathy plot model of the human (hu) NKCC1. Based on computer-aided analyses from which this model is derived, the CCCs are predicted to have a membrane-associated domain flanked by cytosolic termini. For NKCC1, the membrane localization of the central domain has been confirmed indirectly by the identification of regions that mediate ion transport (24 26) and that behave as transmembrane segments when expressed as fusion proteins in rabbit reticulocyte lysates (27). For this carrier system, likewise, the intracellular localization of both termini has been confirmed indirectly by the identification of epitope sites that are not accessible unless the lipid bilayer is permeabilized (28) and by the identification of phosphoacceptor sites that are involved in transporter regulation (3, 16, 18, 19). Indirect evidence suggests that CCCs are assembled at the cell surface as homo-oligomeric structures. For example, crosslinking of NKCC1, NKCC2, or NCC in membrane extracts leads to the formation of large complexes, the molecular size of which is twice that of the monomeric forms (29, 30). In agreement with these studies, we and others have observed that non-functional NKCC1 mutants or NKCC2 splice variants can reduce the activity of functional versions of these carriers in heterologous expression systems, implying that they exert a dominant negative effect through direct homo-oligomerization of the carriers or through their association with an accessory protein (31, 32). High resolution imaging data confirming the interpretation of such findings are unavailable at present. In this study, we have exploited the yeast two-hybrid system to search for additional partners of NKCC1 using the proximal C terminus as bait, and we have found a sequence that belongs to the distal C terminus of the same protein. We have also found that the association between the two regions involves a large number of residues and that it could also be phosphorylation-dependent. Hence, our results identify for the first

2 40770 Self-associating Sites in NKCC1 TABLE I Oligonucleotides used to generate 15 different constructs and to sequence their inserts The oligonucleotides are written 5 to 3 and restriction sites are underlined. a) C1t Forward: tc acc ccg gga tcc tct aca caa gc ca tgc cat ggt gcc agg aga ttt ct b) C1a Forward: cgc cta aaa gaa ggt cta gat ata tct cat ctt caa gg cc ttg aag atg aga tat atc tag acc ttc ttt tag gcg c) C1b Forward: c aaa atg aag gcc ttt tat gct cca gta cat gc gc atg tac tgg agc ata aaa ggc ctt cat ttt g d) C1e Forward: ca gaa ttc atg tcc atc gat caa gcc c act cga gtc cag acc ttc ttt tag gcg e) C1f Forward: g gaa ttc gat gat gga ggt ttg acc g ctc gag gtt tgg ctt cat acg acc f) C1g Forward: ca gaa ttc atg tcc atc gat caa gcc cgc tcg agc aag gac aag tgt gtt tgg c g) C1h Forward: cc gaa ttc cgt cca gct tta ctt cat c cgc tcg agc aag gac aag tgt gtt tgg c h) Cii Forward: g gaa ttc tcc aaa ggc cct att gtg c act cga gtc cag acc ttc ttt tag gcg i) C2c Forward: ctt ctt gaa gct tgt aca cag ttt cag ctg aaa ctg tgt aca agc ttc aag aag j) C2e Forward: cg gaa ttc gaa gat gaa cca tgg cga cgg gat cca ttc gcc att gtg atg k) C2f Forward: cg gaa ttc gga gat atc aat acc aaa cc cgc tcg agc aac tgg gag act cat gac l) C2g Forward: cg gaa ttc cat gaa gat gat aaa gag c c act cga gtg ccg gta tgt ctt ggt c m) C2h Forward: g gaa ttc aaa aat gtt ggt ttg atg c act cga gtg ccg gta tgt ctt ggt c n) C2i Forward: g gaa ttc caa gcc ctg act tac ctg gct cga gta cca ttc tgg agg gct g o) C Forward: ttc gaa ttc ggg atc ctc tac aca agc ccg ccg ctc gag cca ttc gcc att gtg atg p) PGilda Forward: cgt cag cag agc ttc acc att g pb42ad Forward: cc agc ctc ttg ctg agt gga gat g time a self-interacting domain in NKCC1 and points toward novel mechanisms by which CCCs regulate their activity. EXPERIMENTAL PROCEDURES Chemicals, Reagents, Kits, and Cell Strains Unless mentioned otherwise, chemicals, reagents, or kits were from several suppliers. They included the following antibodies (Abs): 1) a mouse anti-hemaglutinin (HA) Ab (Biochem, catalog number MM5-101R; 2) a goat anti-lexa Ab (Santa Cruz Biotechnology, catalog number SC-1726); 3) a mouse horseradish peroxidase-coupled IgG (Amersham Biosciences, catalog number NXA931; and 4) a goat horseradish peroxidase-coupled IgG (Roche Applied Science, catalog number ). Vectors and cdna constructs were propagated in XL1-blue cells (Stratagene). Some of these sequences were also introduced in EGY48 yeast (Clontech) and BL21 Escherichia coli cells (Amersham Biosciences) as described below. Vectors Subcloning, expression of reporter genes, or DNA amplification was carried out with the following (empty or insert-bearing) vectors: 1) pgilda (Clontech), which contains 5 to 3, the ADH1 (antidiuretic hormone 1) promoter, a sequence encoding the LexA DNAbinding domain, a multiple cloning site (MCS), a His transformation marker (His ), and an ampicillin resistance gene (AMP R ); 2) pb42ad (Clontech), which contains the P GAL1 promoter, a sequence encoding the activating domain of a transcription factor and the HA epitope, an MCS, a Trp, and an AMP R ; 3) p8op-lacz (Clontech), which contains LexA operators (ops) that can interact with the pb42ad-derived activating domain, two reporter genes (Leu and LacZ) that are under the control of LexA, a Ura and an AMP R ; 4) pgex (Amersham Biosciences), which contains the Ptac promoter, a sequence encoding glutathione S-transferase (GST), an MCS, and an AMP R ; 5) pcdna3 (Invitrogen), which contains the T7 promoter, an MCS, and an AMP R ; and 6) pbs (Stratagene), which contains an MCS and a AMP R. C1t Constructs The bait used for the two-hybrid screen consists of a 567-bp fragment that encodes the putative cytosolic C terminus of hunkcc1 from residue 9 after the 12th transmembrane domain to residue 197 (see Fig. 1B). It was obtained from an available hunkcc1/ pbs (32, 33) through 30 cycles of PCR using the high fidelity PCR master kit (Roche Applied Science) with an XmaI-capped forward primer and an NcoI-capped reverse primer (Table Ia). The PCR fragment (C1t) was cloned in pgilda generating C1t/pGilda, which should encode a LexA-C1t fusion protein in yeast (Table II, and see also Fig. 2). The insert of C1t/pGilda was also transferred to pgex as an EcoRI- XhoI fragment generating C1t/pGEX, which should encode a C1t-GST fusion protein in bacteria (Table II, and see also Fig. 2). In this work, additional constructs containing shorter C1t inserts (called C1t DELs ) were produced using two approaches. First, the 3 region of C1t/pGilda was truncated by removing nucleotide segments between a restriction site (BsrgI, ClaI, StuI, or XbaI) that cuts in the coding sequence of the insert and a downstream restriction site (XhoI) that cuts in the MCS. BsrgI and ClaI are naturally present in C1t (bps and ), whereas StuI and XbaI were created by substitution (bps and ) using the QuikChange mutagenesis kit (Stratagene) with mutagenic primers (Table I, b and c). The final constructs (C1a, C1b, C1c, and C1d/pGilda) were generated after excising the 3 end of the insert and ligating the vector-containing fragment pretreated with Klenow in dntp-supplemented buffer (Table II, and see also Fig. 2). For the other approach, segments in C1t were amplified through 30 cycles of PCR with an EcoRI-capped forward primer and an XhoI-capped reverse primer (Table I, e h). They were subsequently cloned in pgilda generating C1e, C1f, C1g, C1h, and C1i/pGilda (Table II, and see also Fig. 2). C2t Constructs One of the interacting proteins identified in the current study (called C2t) is derived from a 729-bp fragment that encodes the distal C terminus of hunkcc1 (Table II, and see also Fig. 1C). It is cloned in the vector pb42ad behind the LexA activating domain and HA-encoding sequence. This insert was also subcloned in another vector as an EcoRI-XhoI fragment. The resulting construct, C2t/pcDNA3, should produce a radioactive prey during in vitro translation (Table II, and see also Fig. 2). Additional constructs containing shorter C2t inserts (called C2t DELs ) were generated using approaches that are similar to those outlined for C1t DELs inserts. Here, the sequences removed at the 3 end of C2t/ pb42ad were between a restriction site (BsrgI, AccIII, or NcoI) that cuts in the coding sequence of C2t and a downstream restriction site (XhoI) that cuts in the MCS. AccIII and NcoI are naturally present in C2t (bps and ), whereas BsrgI was created by substitution (bps ) using the QuikChange kit with mutagenic primers (Table Ii). These constructs are called C2a, C2b, and C2c/pB42AD (Table II, and see also Fig. 2). As for the PCR-derived constructs, they were produced with an EcoRI-capped forward primer and an XhoI- or BamHI-capped reverse primer (Table I, j n). They are called C2e, C2f, C2g, C2h, and C2i/pB42AD (Table II, and see also Fig. 2). The C /pcdna3 Construct To study the C1t-C2t interaction

3 Self-associating Sites in NKCC TABLE II Nomenclature used to designate constructs and protein segments The lengths of these segments and their P n s relative to hunkcc1 and to various domains within hunkcc1 are also indicated. Name of the construct Length of the fused proteins (in residues) Length of NKCC1 fragments (in residues) P n in NKCC1 Total length (in residues) P n in C1t or C2t n n n C1t/pGilda C1a/pGilda C1b/pGilda C1c/pGilda C1d/pGilda C1e/pGilda C1f/pGilda C1g/pGilda C1h/pGilda C1i/pGilda C2t/pB42AD C2a/pB42AD C2b/pB42AD C2c/pB42AD C2e/pB42AD C2f/pB42AD C2g/pB42AD C2h/pB42AD C2i/pB42AD C1t/pGEX C2t/pCDNA C : from first codon C : from first Met C /pcdna3 C : from first codon (inC1t) C : from first Met (inC1t) in the context of an intact domain, a nucleotide segment that encodes the hunkcc1 cytosolic C terminus (residues corresponding to bps of the coding sequence) was amplified from hunkcc1/pbs through 30 cycles of PCR with an EcoRI-capped forward primer and an XhoI-capped reverse primer (Table Io). The resulting fragment (C ) was subsequently cloned in pcdna3 (Table II, and see also Fig. 2). Yeast Two-hybrid Screen EGY48 yeasts (Y) were first transformed with the construct p8op-lacz and seeded on Ura plates generating the strain Yop. These cells were transformed once more with C1t/pGilda and seeded on Ura His plates generating YopC1t. The latter strain was subsequently tested for expression of the hybrid protein by Western blotting (see below and see Fig. 3A) and tested for autonomous reporter activation on Leu plates containing 80 g/ml X-galactosidase (X-gal). A search for interactors was performed by transforming YopC1t cells with a human heart library cloned in pb42ad and subjecting the transformants to two rounds of selection, first on Ura His Trp plates and subsequently on Ura His Trp Leu plates. Resistant colonies were transferred on Ura His Trp Leu plates containing X-gal, and those expressing -galactosidase activity were amplified in regular yeast medium. Prey plasmids were extracted according to well established procedures, and inserts were analyzed by automated sequencing. Two procedures were carried out to confirm the specificity of the identified interactions. First, Yop cells were transformed with a single prey/pb42ad and tested for expression of a hybrid protein by Western blotting (see below and see Fig. 3A) after selection of colonies on Trp plates. Second, Yop cells were cotransformed with pairs of plasmids (single prey empty pgilda versus single prey LAM/pGilda) 2 and tested for reporter gene activation on Ura His Trp Leu X-gal plates. Yeast Two-hybrid Mapping Analysis The C1t DELs /pgilda and C2t DEL s/pb42ad that were engineered by sequence excision or PCR (as detailed above) were used to identify the C1t-C2t-interacting sites more precisely. As a preliminary prerequisite for this analysis, Yop cells were transformed with truncated C1t DELs /pgilda or C2t DEL s/pb42ad and tested for expression of a hybrid protein by Western blotting (see below) after selection of colonies on Ura His or Ura Trp plates, respectively. Cells expressing the heterologous protein were retransformed with a full-length C2t-bearing or C1t-bearing construct, and they were 2 LAM, which stands for human lamin C, has been reported not to form complexes or interact with most other proteins (35). tested for their ability to grow on Ura His Trp Leu plates or to express -galactosidase activity on Ura His Trp X-gal plates. Pull-down Assays C1t-GST fusion proteins (used as bait) and GST proteins (used as control) were generated through isopropyl-1-thio- -Dgalactopyranoside induction using protease-deficient BL21 E. coli cells transformed with pgex-made constructs. They were isolated by sonication in pbs and immobilized on glutathione-coupled Sepharose (GS) beads (Amersham Biosciences). Radioactive proteins (used as prey) were synthesized from cdna inserts/pcdna3 using the TNT rabbit reticulocyte lysate system (Promega). The final reaction solution was (in 50 l): 1 g of cdna, 40 l of rabbit reticulocyte lysate premixed with amino acids, and 0.4 mci/ml [ 35 S]Met or 20 M cold Met. A fraction of the proteins synthesized were also treated with a phosphorylation mix using the following reaction solution (in 100 l): radioactive prey (1:5 dilution), protein kinase A or protein kinase C mixture (2 g/ml diluted in appropriate buffers), ATP (100 M), and for some of the reactions, [ - 32 P]ATP (10 Ci/ml). The pull-down assay as such was carried out by incubating 2 g of proteins immobilized on GS beads with 10 l of labeled prey for 16 h at 4 C in a binding buffer ( mm NaCl, 1 mm EDTA, % Triton X-100, and 20 mm Tris-HCl, ph 6 8) followed by several washes in the same buffer. Protein Analyses Radioactive prey bound to GS beads or whole cell extract proteins derived from yeast or bacteria were separated on SDSpolyacrylamide Tricine gels and revealed by Coomassie Blue staining, direct autoradiography, or chemiluminescence. For the latter procedure, detection was carried out on blots of the Tricine gels using various Abs. Whole cell extract proteins were quantified with the DC protein assay (Bio-Rad), whereas protein bands separated by gel electrophoresis were quantified numerically (using known concentrations of albumin in some experiments) with the NIH program Scion Image Beat Sequence Analyses The bp content of cloned inserts was determined by automated sequencing using plasmid-derived primers (Table Ip). Blast searches, sequence alignments, and structure predictions were carried out with DNAStar (Lasergene), the PLOT program (Biff Forbush), and online programs available through NCBI, EMBL-EBI, and the BCM Search Launcher web pages. RESULTS Two-hybrid Screen The cell strain used for this experiment is called YopC1t and consists of p8op-lacz-transformed EGY48 yeast (Yop) retransformed with a bait-bearing plasmid (C1t/ pgilda), which encodes the proximal region of the hunkcc1

4 40772 Self-associating Sites in NKCC1 FIG. 1.Hydropathy plot models of hunkcc1. The symbols represent amino acid residues. A includes the entire sequence of hunkcc1. B includes residues from the putative cytosolic C terminus, showing C1t in gray. C shows C2t in gray. InB and C, the first Met in both C1t and C2t is indicated by an arrow. These models were drawn using the program PLOT by Biff Forbush. cytosolic C terminus. Transformation of YopC1t with a human heart library/pb42ad and selection of these cells on Ura His Trp plates led to the formation of over 1 million colonies. Of these colonies, 41 grew on Ura His Trp Leu, and 32 expressed above background -galactosidase activity on Ura His Trp Leu X-gal. Confirmation studies in the yeast expression system revealed that the identified interactions were specific (results not shown). Interestingly, inserts found in the prey plasmids of -galactosidase-positive Leu-resistant colonies corresponded to the coding regions of seven different proteins. One of the inserts was a 729-nucleotide sequence that encodes the distal C terminus of hunkcc1 (Fig. 1C). This prey was termed C2t/pB42AD. Selective Two-hybrid Mapping Analysis This study was carried out to narrow the regions in the C terminus of hunkcc1 that are responsible for the C1t-C2t interaction. The constructs that were used encode 19 different protein segments including C1t (189 residues), C2t (243 residues), truncated C1ts (C1t DELs : residues), and truncated C2ts (C2t DELs : residues). All of these segments (except for C1t and C2t) are illustrated in gray with models of hunkcc1 (Fig. 2A), and the nomenclature under which they are designated is provided in Table II. In Fig. 3A, Western analyses of Yop cells transformed with C1t-, C2t-, C1t DELs -, or C2t DELs -bearing constructs show that the expected hybrid proteins (probed with an anti-lexa or anti-ha Ab) are produced. Indeed, bands at the adequate molecular weight mark are visualized in all lanes except those identified as C1h and C2d, which contained no proteins. Fig. 3A also shows that within each panel, the intensity of individual bands is relatively similar. Thus, variability in cell growth or -galactosidase activity among Yop cells that will be transformed with different combinations of constructs (see below) will not be due to variability in bait or prey expression. The behavior of Yop cells cotransformed with two constructs (C2t C1t DEL versus C1t C2t DEL ) is shown in Fig. 3B. In columns 1 and 3, cotransformants were seeded on Ura His Trp Leu plates (under which conditions cell growth will only be observed if an interaction occurs), and in columns 2 and 4, they were seeded on Ura His Trp X-gal plates (under which conditions an interaction will generate strong -galactosidase activity). Quite surprisingly, the illustration of such maneuvers shows that only one of the C1t DELs and only one of the C2t DELs used for the mapping analysis are able to support a bait-prey association. They correspond to C1a/pGilda, which encodes most of C1t except for the last 24 residues, and to C2i/pB42AD, which encodes most of C2t except for the first 25 residues. Results of the mapping analysis are summarized in Fig. 2B1. The various protein segments that were produced in yeast (19 total) are represented by horizontal bars aligned with regions of the C terminus to which they correspond. Here, black is used to indicate that the protein segments induced strong -galactosidase activity, and white is used to indicate that they induced no (or only weak) activity. As will be reported later in greater detail, additional protein segments were produced by in vitro translation and tested for their ability to interact with C1t in pull-down assays. For this reason, they are included in the mapping analysis described in Fig. 2B2. Here again, black is used to indicate that an interaction occurred between bait and prey. An interpretation of the mapping studies is provided schematically in Figs. 2B3 (bottom bar) and 4A, highlighting regions that are minimally required for the interaction in black, highlighting the regions that are not required in white, and highlighting the regions that may or may not be required in gray. These figures show that the essential interacting regions are dispersed over a long distance in the C terminus. In C1t, they correspond to C and C (subscripted characters indicate the residue sequence in hunkcc1), and in C2t, they correspond to C and C The figures also show that an interaction between bait and prey will not occur unless two essential interacting regions are present in each of the partners. Sequence analyses of the essential interacting regions identified in this work are summarized in Fig. 4B. The upper panel depicts the amino acid content of each essential interacting region, and the lower panel depicts the position (P n ) of these regions (represented as boxes) relative to the entire C terminus and to various protein domains (represented as a long horizontal line and shorter horizontal lines, respectively). The lower panel also shows the percentage of homologies between the essential interacting regions of NKCC1, NKCC2, and NCC (dark gray, 90% homology; medium gray, 75 80% homology; white, 50% homology) and the P n s of positively or negatively charged residues in the C terminus (vertical lines). Through these depictions, it is seen that the essential interacting regions are highly conserved among the Na -dependent CCCs except for the proximal portion of essential-interactingregion-3. These regions are also seen to harbor only 1 cysteine residue (P n 59 in essential-interacting-region-3) and to be par-

5 Self-associating Sites in NKCC FIG. 2.Models of the C terminus and of C1t and C2t protein segments. A, models of C1t truncated bait (C1t DELs ) and of C2t truncated prey (C2t DELs ). Stretches of symbols designate protein segments that were used as bait (left panel) or as prey (right panel) in a yeast two-hybrid mapping analysis. The stretch of gray symbols in C2j corresponds to a protein segment that was produced by in vitro translation. As in Fig. 1, all of these models were drawn using the program PLOT by Biff Forbush. B, horizontal bars corresponding to the cytosolic C terminus (upper and lower bars) and to the protein segments that are illustrated in panel A; the lengths of these bars and their P n s relative to the C terminus are to scale. In B1, bars represent bait (left group) or prey (right group). Here, black is used to indicate that a protein segment supported an interaction, and white is used to indicate that it did not. In B2, bars represent protein segments that were produced by in vitro translation, and the dashed line represents a region that is also included in C2t radioactive protein but that was not used as bait. In B3, black signifies that the segment is required for an interaction but not sufficient, white signifies that the segment is not required, and gray signifies that the segment may or may not be required. ticularly rich in neutral and hydrophobic residues when compared with other regions in the C terminus. Remarkably, a putative protein kinase A type 2 (PKA-2) site is found at the beginning of essential-interacting-region-4, and a PP-1 site is found just after essential-interacting-region-3; as will be discussed later, kinases and phosphatases are believed to play a key role in NKCC1 regulation by interacting with the N terminus of the carrier (5, 15, 16, 34) and its C terminus as well (5, 23, 36). Other consensus sites involved in protein-protein interactions include four sites belonging to forkhead-associated binding domains (Fig. 4B) and several sites belonging to Src homology and PDZ class III domains (not shown). It is noteworthy that the C1i protein segment, which is very similar to C1t except for lacking a critical residue belonging to a forkhead-associated binding domain consensus site (TQAL), is not able to support growth of C2t-transformed yeast on Ura His Trp Leu plates (Fig. 2B1). Pull-down Assays These studies were undertaken to confirm the C1t-C2t interaction outside of the yeast system. GST or C1t-GST fusion proteins were generated in E. coli pretransformed with an empty pgex vector or with C1t/pGEX, and they were immobilized on GS beads. Prey were generated by in vitro translation from C /pcdna3 or C2t/pcDNA3. Their predicted length (419 and 141 residues) is shorter than expected (454 and 243 residues) based on the P n of the first AUGs downstream of the T7 promoter (Fig. 1, B and C); for this reason, they will be called C and C For the pull-down assays as such, GST-GS beads or C1t-GST-GS beads were incubated with equivalent amounts of prey and electrophoresed on SDS gels alongside with an aliquot of in vitro translated proteins not preincubated with the bait. Results of these studies are detailed below. In Fig. 5A, Coomassie Blue staining of the protein gels as such shows that GS beads are highly enriched in plasmidderived proteins. Based on an internal control, the quantity of bound C1t-GST bound GST in lane 4 is 1.5 g, and the quantity of bound GST in lane 5 is 3.0 g. In Fig. 5B, autoradiograms of similar gels reveal that in vitro translation of C and C2t produces two major bands in each case (lanes 1 and 4). The lower 46-kDa band in lane 1 probably corre-

6 40774 Self-associating Sites in NKCC1 FIG. 3. Two-hybrid mapping analysis. A, Western analyses of yeast proteins extracted with a lysis solution (8 M urea, 5% SDS, 40 mm Tris-HCl, ph 6.8, 0.1 mm EDTA, and 125 M -mercaptoethanol) to which glass beads and protease inhibitors were added. In the upper panel, the yeasts were transformed with one of the C1/pGilda bait, and the Western analysis was performed with 100 g of proteins using the anti-lexa Ab. In the lower panel, the yeasts were transformed with one of the C2/pB42AD prey, and the Western analysis was performed with 50 g of proteins using the anti-ha Ab. In both panels, an asterisk signifies that the lane contained no proteins. Cell extracts from C1htransformed yeast were not available for the Western analysis shown here, but previous experiments showed that these cells did produce a hybrid protein. tot, total. B, behavior of cotransformed yeast seeded on two types of plates ( Ura His Trp Leu in columns 1 and 2, and Ura His Trp X-gal in columns 3 and 4); these plates were incubated at 30 C for 3 6 days. sponds to C , and the lower 16-kDa band in lane 4 corresponds to C Thus, it appears likely that these two prey were initiated at the first AUG off of the templates that were used for translation. As for the upper 50- and 27-kDa bands in lanes 1 and 4, they probably also correspond to NKCC1-derived prey. However, the sizes of the bands indicate that translation was initiated off of a non-aug codon, leading to the formation of C and C protein segments. In this system, not uncommonly, a triplet differing from AUG in 1 bp (e.g. a CUG, ACG, and GUG) can encode the first residue of an open reading frame (23); microsequencing of the C2t-derived high molecular weight protein segment (eluted from an unstained gel) confirmed that this was the case (results not shown). Results of the pull-down assays are also shown in Fig. 5B.As anticipated, the quantities of radioactive prey that associate with GS beads vary as functions of the type of prey (C versus C versus C versus C ) and type of beads (GST-GS versus C1t-GST-GS). For C , C , and C , these quantities are much higher with C1t-GST-GS when compared with GST-GS (lane 3 versus lane 2 and lane 6 versus lane 5). Quantification of prey-derived signals (Fig. 5C) reveals that the differences are 35-fold for C (specific binding 2.5%), 20-fold for C (specific binding 0.7%), and 10-fold for C (specific binding 3.0%). For C , on the other hand, specific binding was low regardless of the buffer used during incubation. These results confirm that C1t can interact with C2t in vitro, and they also suggest that a 102-residue segment in C2t is required for the association. Phosphorylation of the prey with protein kinase A or a mixture of protein kinase Cs did not affect the relative quantities of radioactive proteins that can associate with GS beads (results not shown). In these studies, however, 32 P phosphorylation of prey synthesized with cold Met could not be detected by autoradiography (results also not shown). Thus, C1t or C2t may not be phosphorylatable in this in vitro system, or the quantity of [ 32 P] incorporated in the prey may have been below detection threshold. DISCUSSION In this study, we have exploited the yeast two-hybrid system to uncover novel partners of NKCC1. We have used the proximal region of the cytosolic C terminus (C1t) as bait and have identified a candidate interactor that corresponds to the distal region of the same domain (C2t). Control studies and pull-down assays confirmed that the association between C1t and C2t is specific, demonstrating for the first time that the NKCC1 C terminus possesses self-interacting properties. Additional analyses in which the two-hybrid system was used as a mapping tool to narrow the interacting regions further revealed the existence of several contact sites between C1t and C2t. In fact, it was possible to deduce from such analyses that a minimum of four regions (called C ,C ,C , and C ) are required for the C1t-C2t interaction to occur in vitro. Quite remarkably, these sites occur at remote P n s along the C terminus separated from one another by over 59 residues. Although further mutagenic studies will be required to identify the interacting residues more definitively, it can already be presumed at this stage of the mapping analysis that the C1t-C2t association is complex and that it probably relies on proper folding of the C terminus. A potential shortcoming of the approach used to identify C1t-C2t-interacting sites is that it does not elucidate the role played by residues outside of essential interacting regions. For example, residues critically involved in the formation of C1t- C2t complexes could be missed if they occur in a protein segment that is also devoid of such essential interacting regions. In addition, improper folding of the C terminus resulting from a truncation in NKCC1 could have precluded associations that normally occur in vivo when the carrier is intact, leading to incorrect interpretations of where the essential interacting regions are localized. One possible example that illustrates these limitations comes from the identification of a C1t-binding site that belongs to a forkhead-associated domain (TQAL) but that is partly outside of an essential interacting region. Indeed, when a single residue is removed from this site (as in C1i), the

7 Self-associating Sites in NKCC FIG. 4. Analysis of essential interacting regions. A, model of the cytosolic C terminus of hunkcc1 showing the four essential interacting regions identified in this work. The color code is as in Fig. 2B3. B, sequences analyses of the essential interacting regions. The upper panel shows the amino acid sequence of each essential interacting region (termed E1R in this figure), and the lower panel shows the P n of these regions relative to the C terminus and to known protein-binding domains. Here, the long horizontal line illustrates the C terminus, the vertical lines illustrate positively or negatively charged residues (each line corresponds to a single residue), the boxes illustrate the essential interacting regions, and the short horizontal lines illustrate consensus sites for protein-binding domains (these sites are abbreviated as follows: FHA, forkhead-associated domain; PP-1, protein phosphatase type 1; PKA-2, protein kinase A type 2). In this panel, in addition, dark gray is used to indicate that regions are 90% homologous among NKCC1, NKCC2, and NCC, medium gray is used to indicate that regions are 75 80% homologous, and white is used to indicate that regions are 50% homologous. All lines were drawn to scale. protein segment is no longer able to induce strong -galactosidase activity in yeast when coexpressed with C2t. Left alone, the identification of a TQAL site in a self-interacting region of NKCC1 is an intriguing finding because it points toward novel mechanisms by which CCCs assemble with one another. Indeed, forkhead-associated binding domains have been shown to act as phosphopeptide-binding modules that enable phosphorylation-dependent protein-protein interactions (36). Based on the presence of a TQAL site in essentialinteracting-region-1 and of a putative PKA-2 site in essentialinteracting-region-4, it is tempting to postulate that C2t is the phosphopeptide-containing epitope of C1t. Unfortunately, the in vitro system used in this work was not adequate to address such a possibility. In addition, the involvement of the C terminus in phosphoregulation of NKCC1 has not been examined in depth thus far. It will therefore be a challenging task in future studies to determine whether self-interactions within the NKCC1 C terminus are phosphorylation-dependent. The uncovering of large NKCC1 segments that behave as binding partners in vitro and that belong to distinct segments of the C terminus allows us to make speculations regarding the various conformational states that could be assumed by this region of the transporter. These speculations are illustrated in Fig. 6 through simplified representations of the cytosolic C terminus, assuming that the C region corresponds to one binding site and the C region to another binding site. The models proposed in this figure are also based on structural predictions derived from hydropathy plot analyses of hunkcc1 (3, 5, 39), and thus, they presuppose that the interacting segments are both on the cytosolic side of the lipid bilayer and interrupted by a segment that is also cytosolic. The first type of structural configuration that could be supported by a C1t-C2t interaction involves the formation of intramolecular contacts between C and C (Fig. 6A). As a result of such contacts, it is predicted that the C terminus would acquire a globular conformation with its distal end lying relatively close to the central hydrophobic domain. It is also predicted that this configuration would be important in defining accessibility of the C terminus to other proteins. For example, the acquisition of intramolecular bonds between C and C could prevent the formation of intermolecular bonds between the same regions and force the cotransporter to adopt a monomeric state or interact differently with its usual regulatory partners. The formation of intermolecular contacts between C and C is at the basis of another type of configuration that could be supported by the cytosolic C terminus. In fact, the occurrence of such contacts would signify that NKCC1 is organized as a homo-oligomeric structure in the cellular environment. Here, in addition, it is predicted that different types of high order structures could be formed, taking again into consideration the presence of two interconnecting sites that belong to distinct domains of the C terminus. For one such type (Fig. 6B), the C terminus of two monomers would be interlocked through a pair of C C bonds, and for another type (Fig. 6C), the C terminus of four monomeric subunits would be assembled through two pairs of C C bonds. In the latter scenario, however, each monomer would supposedly interact with more than one monomer. A role for C1t and C2t in intermolecular assembly can be implied more readily if the indication exists that NKCC1 homooligomerizes at the cell surface. Although we have not verified that this was the case, two lines of evidence favor the idea that NKCC1 does operate as a high order structure composed of more than one ion-carrying subunit. The first line of evidence is based on a general predilection shared by most ion transport systems to form homomultimers in the lipid bilayers of cells (40 42), and the second line of evidence, is based on experimental data from which a hypothetical structure definition of CCC proteins has emerged in recent years (29, 30). The common tendency of ion transport systems to assemble as high order structures has been revealed in part by x-ray crystallography or NMR spectroscopy. For example, high resolution imaging studies have demonstrated that Shaker channels in lipid bilayers exist primarily as homodimeric and homotetrameric structures, the assemblies of which are critically driven by a conserved self-interacting domain in the N terminus (43). For another ion transport system, band 3, such studies have also revealed a clear preference for homodimerization and homotetramerization at the cell surface, but unlike Shaker channels, assembly of HCO 3 /Cl exchangers is supported by C-terminally located binding arms (44). It is now recognized that several other solute carriers, e.g. the Na /H exchangers (40), the Na /Ca 2 exchangers (45), etc., are organized as homo-oligomeric structures. Evidence showing that members of the CCC family are also defined structurally as homo-oligomeric units has come mainly from cross-linking studies. As mentioned earlier, Moore-Hoon and Turner (30) have observed that the molecular size of NKCC1 could change by a 2-fold factor when membranes ex-

8 40776 Self-associating Sites in NKCC1 FIG. 5. Pull-down assays. A, Coomassie Blue stain of a SDS-polyacrylamide Tricine gel illustrating the quantity of C1t-GST-GS beads or GST-GS beads loaded in a lane and incubated with 10 l of prey. MS, molecular size. B, autoradiograms of similar gels showing radiolabeled prey unmixed with GS beads (1 l in each of lanes 1 and 4) and prey incubated with GS beads (other lanes). C, quantification of bands shown in panel B. The left y axis shows n-fold differences in radioactive signals between lanes 3 and 2 or lanes 6 and 5, whereas the right y axis shows the percentage of specific binding calculated as SB 100 [signal with C1t-GST-GS signal with GST-GS]/[radioactive prey signal 10]. B is from a representative experiment (n 3 4 for each of the prey). FIG. 6.Models of C1t-C2t interactions. The three representations are proposed under the assumption that the region C (C1t) and the region C (C2t) each correspond to a single binding site. In each of the panels, the transmembrane segment is represented by a gray box, and the C terminus of different NKCC1 monomers is attributed a specific color (blue, red, green, and yellow). pressing this carrier were treated with cross-linking agents; of importance, these chemically induced complexes were found to contain no other proteins besides NKCC1. In the course of such studies, Moore-Hoon and Turner (30) also observed that the behavior of a mutant rat NKCC1 lacking most of the cytosolic N terminus (NKCC ) was similar to that of the wild type carrier. Taken together, these findings favor the idea that C1t and C2t are involved in intermonomeric associations. In the absence of crystallographic data, it is not possible to determine with certainty whether NKCC1 has a preference for the monomeric or multimeric state, and thus, whether C1t and C2t are involved in intra- or intermolecular interactive processes. Based on the properties generally ascribed to self-interacting domains, however, it appears unlikely that the sole purpose of C1t and C2t would be to assist NKCC1 in intramolecular folding. Indeed, whereas the latter process is primarily driven by the action of various enzymes including chaperones, foldases, and isomerases (46), higher levels of structural organization such as homo-oligomeric associations have been shown to rely essentially on the existence of correctly folded self-interacting domains (46, 47). As reported for band 3 (42), thus, it is likely that C1t and C2t allow NKCC1 to adopt a variety of configurations at the cell surface by underlying homo-oligomerization of the carrier, perhaps in a regulated fashion. The cytosolic C terminus of CCC family members is highly conserved, especially among the KCC isoforms (9, 48). Several of these members, in addition, have been shown to coexist in the same cell types (1 4, 48, 49). Thus, the findings reported here raise the interesting question of whether C1t and C2t could also play a role in hetero-oligomeric associations between different CCC members. Such associations have been shown to bring about diversity in the pharmacologic and kinetic properties of various ion channels (50). For the CCCs, similarly, hetero-oligomerization could potentially lead to the formation of structures with unique functional characteristics differing from those of the parent homo-oligomers. At the same time, this possibility raises additional questions regarding the true functional signature of individual CCCs based on previous characterizations. In conclusion, the identification of self-interacting domains in the C terminus of NKCC1 represents a very important finding in the research area of cation-cl cotransport, providing new information in relation to the tertiary and quaternary structure of CCC proteins and leading the way to future inves-

9 Self-associating Sites in NKCC tigations aimed at determining the mechanisms and specificity of molecular interactions for these transport systems. Acknowledgments We are thankful to Dr Jacques Landry for reagents and to Michael G. Baril and Micheline Noël for technical assistance. REFERENCES 1. Haas, M., and Forbush, B. (2000) Annu. Rev. Physiol. 62, Isenring, P., and Forbush, B., (2001) Comp. Biochem. Physiol. Part A Mol. Integr. Physiol. 130, Payne, J. A., and Forbush, B. (1995) Curr. Opin. Cell Biol. 7, Russell, J. M. (2000) Physiol. Rev. 80, Xu, J. C., Lytle, C., Zhu, T. T., Payne, J. A., Benz, E., and Forbush, B. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, Payne, J. A., and Forbush, B. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, Gamba, G., Saltzberg, S. N., Lombardi, M., Miyanoshita, A., Lytton, J., Hediger, M. A., Brenner, B. M., and Hebert, S. C. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, Gillen, C. M., Brill, S., Payne, J. A., and Forbush, B. (1996) J. Biol. Chem. 271, Mount, D. B., Mercado, A., Song, L., Xu, J., George, A. L., Delpire, E., and Gamba, G. (1999) J. Biol. Chem. 274, Payne, J. A., Stevenson, T. J., and Donaldson, L. F. (1996) J. Biol. Chem. 271, Race, J. E., Makhlouf, F. N., Logue, P. J., Wilson, F. H., Dunham, P. B., and Holtzman, E. J. (1999) Am. J. Physiol. 277, C1210 C Caron, L., Rousseau, F., Gagnon, E., and Isenring, P. (2000) J. Biol. Chem. 275, Bergeron, M. J., Gagnon, E., Wallendorff, B., Lapointe, J. Y., and Isenring, P. (2003) Am. J. Physiol. 285, F68 F Boettger, T., Hubner, C. A., Maier, H., Rust, M. B., Beck, F. X., and Jentsch, T. J. (2002) Nature 25, Darman, R. B., Flemmer, A., and Forbush, B. (2001) J. Biol. Chem. 276, Darman, R. B., and Forbush, B. (2002) J. Biol. Chem. 277, Dowd, B. F., and Forbush, B. (2003) J. Biol. Chem. 278, Flemmer, A. W., Gimenez, I., Dowd, B. F., Darman, R. B., and Forbush, B. (2002) J. Biol. Chem. 277, Piechotta, K., Lu, J., and Delpire, E. (2002) J. Biol. Chem. 277, Piechotta, K., Garbarini, N., England, R., and Delpire, E. (2003) J. Biol. Chem. 278, D Andrea, L., Lytle, C., Matthews, J. B., Hofman, P., Forbush, B., and Madara, J. L. (1996) J. Biol. Chem. 271, Liedtke, C. M., Hubbard, M., and Wang, X. (2003) Am. J. Physiol. 284, C487 C Lytle, C., and Forbush, B. (1992) J. Biol. Chem. 267, Isenring, P., and Forbush, B. (1997) J. Biol. Chem. 272, Isenring, P., Jacoby, S. C., Chang, J., and Forbush, B. (1998) J. Gen. Physiol. 112, Isenring, P., Jacoby, S. C., and Forbush, B. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, Gerelsaikhan, T., and Turner, R. J. (2000) J. Biol. Chem. 275, Isenring, P., and Forbush, B. (1997). Int. Soc. Nephrol. (abstr.) 29. Cheng, S., Xu, J. Z., and Hebert, S. C. (1999) J. Am. Soc. Nephrol. 10, 34A (Abstr. A0176) 30. Moore-Hoon, M. L., and Turner, R. J. (2000) Biochemistry 39, Gagnon, E., Forbush, B., Caron, L., and Isenring, P. (2003) Am. J. Physiol. 284, C365 C Isenring, P., Jacoby, S. C., and Forbush, B. (1998) J. Biol. Chem. 273, Jacoby, S. C., Gagnon, E., Caron, L., Chang, J., and Isenring, P. (1999) Am. J. Physiol. 277, C684 C Kurihara, K., Moore-Hoon, M. L., Saitoh, M., and Turner, R. J. (1999) Am. J. Physiol. 277, C1184 C Bartel, P., Chien, C. T., Sternglanz, R., and Fields, S. (1993) BioTechniques 14, Klein, J. D., Lamitina, S. T., and O Neill, W. C. (1999) Am. J. Physiol. 277, C425 C Riechmann, J. L., Ito, T., and Meyerowitz, E. M. (1999) Mol. Cell. Biol. 19, Durocher, D., and Jackson, S. P. (2002) FEBS Lett. 513, Payne, J. A., Xu, J. C., Haas, M., Lytle, C. Y., Ward, D., and Forbush, B. (1995) J. Biol. Chem. 270, Fafournoux, P., Noël, J., and Pouyssegur, J. (1994) J. Biol. Chem. 269, Klingenberg, M. (1981) Nature 290, Rees, D. C., Chang, G., and Spencer, R. H. (2000) J. Biol. Chem. 275, Kreusch, A., Pfaffinger, P. J., Stevens, C. F., and Choe, S. (1998) Nature 392, Zhang, D., Kiyatkin, A., Bolin, J. T., and Low, P. S. (2000) Blood 96, Kim, G. H., Martin, S. W., Fernandez-Llama, P., Masilamani, S., Packer, R. K., and Knepper, M. A. (2000) Am. J. Physiol. 279, F459 F Fink, A. L. (1999) Physiol. Rev. 79, Engelman, D. M., Chen, Y., Chin, C. N., Curran, A. R., Dixon, A. M., Dupuy, A. D., Lee, A. S., Lehnert, U., Matthews, E. E., Reshetnyak, Y. K., Senes, A., and Popot, J. L. (2003) FEBS Lett. 555, Hebert, S. C., Mount, D. B., and Gamba, G. (2004) Pfluegers Arch. Eur. J. Physiol. 447, Lauf, P. K., Zhang, J., Delpire, E., Fyffe, R. E., Mount, D. B., and Adragna, N. C. (2001) Comp. Biochem. Physiol. Part A Mol. Integr. Physiol. 130, Coetzee, W. A., Amarillo, Y., Chiu, J., Chow, A., Lau, D., McCormack, T., Moreno, H., Nadal, M. S., Ozaita, A., Pountney, D., Saganich, M., Vega- Saenz de Miera, E., and Rudy, B. (1999) Ann. N. Y. Acad. Sci. 868,