Dr. Andreas Hanke. The University of Texas Rio Grande Valley Department of Physics and Astronomy (956)

Transcription

1 Dr. Andreas Hanke The University of Texas Rio Grande Valley Department of Physics and Astronomy (956) EDUCATION PhD, Bergische Universitat Gesamthoschschule Wuppertal, 1998 Major: Theoretical Physics Dissertation Title: Critical Phenomena and Polymers near Curved Surfaces BS, Ludwig-Maximilians Universitat Munchen, 1994 Major: Physics EMPLOYMENT Associate Professor (with tenure), University of Texas Rio Grande Valley (September 2015) Associate Professor (with tenure), The University of Texas at Brownsville and Texas Southmost College (September 1, August 31, 2015) Assistant Professor, The University of Texas at Brownsville and Texas Southmost College (April 1, August 31, 2010) Postdoctoral Researcher, University of Oxford, UK (August 1, March 31, 2004) Postdoctoral Researcher, University of Stuttgart, Germany (October 1, July 31, 2003) Postdoctoral Researcher, University of Oxford, UK (January 1, September 30, 2002) Postdoctoral Researcher, Massachusetts Institute of Technology, MA, USA (February 1, December 31, 2001) Postdoctoral Researcher, University of Wuppertal, Germany (January 1, January 31, 2000) Research Assistant, University of Wuppertal, Germany (April 1, December 31, 1998) PUBLICATIONS Book Chapters Generated on Dec 09, 2017 Page 1 of 6

2 R Metzler and A Hanke. "Knots, bubbles, untying, and breathing: probing the topology of DNA and other biomolecules." Handbook of Theoretical and Computational Nanotechnology. Stevenson Ranch, CA: American Scientific Publishers, 2006: Journal Articles A Hanke, L Shokri, I Rouzina, and M Williams. Binding of Ethidium Bromide to DNA probed by Single-Molecule Force Spectroscopy. Nucl. Acids Res.. (2017) M Shoura, S Giovan, A Vetcher, A Hanke, and S Levene. Loop-closure Kinetics Reveal a Stable Right-handed DNA Intermediate in Cre Recombination. Nat. Struct. Mol. Biol. (2017) S Giovan, A Hanke, and S Levene. DNA cyclization and looping in the wormlike limit: normal modes and the validity of the harmonic approximation. Biopolymers. 103, (2015): 528. S Giovan, R Scharein, A Hanke, and S Levene. Free Energy Calculations for Semi-flexible Macromolecules: Applications to DNA Knotting and Looping. J. Chem. Phys.. 141, (2014): A Hanke. Denaturation transition of stretched DNA. Biochem. Soc. Trans.. 41, (2013): 639. A Hanke. Non-Equilibrium Casimir Force between Vibrating Plates. Plos One. 8, (2013): e S Levene, S Giovan, A Hanke, and M Shoura. The thermodynamics of DNA loop formation, from J to Z. Biochem. Soc. Trans.. 41, (2013): 513. A Hanke, S Giovan, and S Levene. Evaluating Partition Functions for Multiscale Models of DNA. Prog. Theor. Phys. Suppl.. 191, (2011): 109. A Vetcher, A McEwen, R Abujarour, A Hanke, and S Levene. Gel mobilities of linking-number topoisomers and their dependence on DNA helical repeat and elasticity. Biophys. Chem.. 148, (2010): 104. R Metzler, T Ambjornsson, A Hanke, and H Fogedby. Single DNA denaturation and bubble dynamics. J. Phys.: Condens. Matter. 21, (2009): A Hanke, M Ochoa, and R Metzler. Denaturation transition of stretched DNA. Phys. Rev. Lett.. 100, (2008): A Hanke. Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA. Nucl. Acids Res.. 36, (2008): R Metzler, T Ambjornsson, A Hanke, Y Zhang, and S Levene. Single DNA conformations and biological function. J. Comp. Theor. Nanoscience. 4, (2007): 1. A Hanke. Adsorption transition of a self-avoiding polymer chain onto a rigid rod. J. Phys. Cond. Mat.. 17, (2005): S1731. O Braun, A Hanke, and U Seifert. Probing Molecular Free Energy Landscapes by Periodic Loading. Phys. Rev. Lett.. 93, (2004): A Hanke and R Metzler. Bubble dynamics in DNA. J. Phys A: Math. Gen.. 36, (2003): L473. A Hanke and R Metzler. Comment on "Why is the DNA denaturation transition first order?". Phys. Rev. Lett.. 90, (2003): F Schlesener, A Hanke, and S Dietrich. Critical Casimir Forces in Colloidal Suspensions. J. Stat. Phys.. 110, (2003): 981. A Hanke and R Metzler. Entropy Loss in Long-Distance DNA Looping. Biophys. J.. 85, (2003): Generated on Dec 09, 2017 Page 2 of 6

3 167. T Emig, A Hanke, R Golestanian, and M Kardar. Normal and lateral Casimir forces between deformed plates. Phys. Rev. A. 67, (2003): A Hanke and M Kardar. Correlation functions near modulated and rough surfaces. Phys. Rev. E. 65, (2002): R Metzler, A Hanke, P Dommersnes, Y Kantor, and M Kardar. Equilibrium Shapes of Flat Knots. Phys. Rev. Lett.. 88, (2002): R Metzler, A Hanke, P Dommersnes, Y Kantor, and M Kardar. Tightness of slip-linked polymer chains. Phys. Rev. E. 65, (2002): A Hanke and R Metzler. Towards the molecular workshop: entropy-driven designer molecules, entropy activation, and nanomechanical devices. Chem. Phys. Lett.. 359, (2002): 22. A Hanke and M Kardar. Modified Critical Correlations Close to Modulated and Rough Surfaces. Phys. Rev. Lett.. 86, (2001): F Schlesener, A Hanke, R Klimpel, and S Dietrich. Polymer depletion interaction between two parallel repulsive walls. Phys. Rev. E. 63, (2001): T Emig, A Hanke, R Golestanian, and M Kardar. Probing the Strong Boundary Shape Dependence of the Casimir Force. Phys. Rev. Lett.. 87, (2001): A Hanke. Critical Adsorption on Defects in Ising Magnets and Binary Alloys. Phys. Rev. Lett.. 84, (2000): A Hanke, M Krech, F Schlesener, and S Dietrich. Critical adsorption near edges. Phys. Rev. E. 60, (1999): A Hanke and S Dietrich. Critical adsorption on curved objects. Phys. Rev. E. 59, (1999): A Hanke, E Eisenriegler, and S Dietrich. Polymer depletion effects near mesoscopic particles. Phys. Rev. E. 59, (1999): A Bringer, E Eisenriegler, F Schlesener, and A Hanke. Polymer depletion interaction between a particle and a wall. Eur. Phys. J. B. 11, (1999): 101. A Hanke, F Schlesener, E Eisenriegler, and S Dietrich. Critical Casimir Forces between Spherical Particles in Fluids. Phys. Rev. Lett.. 81, (1998): E Eisenriegler, A Hanke, and S Dietrich. Polymers interacting with spherical and rodlike particles. Phys. Rev. E. 54, (1996): A Hanke and W Zwerger. Density of states of a damped quantum oscillator. Phys. Rev. E. 52, (1995): A Hanke and W Zwerger. Flux Lines as Dissipative Quantum Strings and the Renormalization of Hc1. Europhys. Lett.. 30, (1995): 127. AWARDS AND HONORS Marie Curie Fellowship, European Commission (July 1, 2003) Research Scholarship, German National Science Foundation (DFG) (August 1, 1999) Scholarship, German National Academic Foundation (February 1, 1990) Generated on Dec 09, 2017 Page 3 of 6

4 PRESENTATIONS Andreas Hanke. "DNA Topology Simplification by DNA topoisomerases: A Survey," Seminar, University of Texas at Dallas, TX, USA, (August 8, 2016) Andreas Hanke. "DNA Topology Simplification by DNA topoisomerases," Seminar, University of Texas at Dallas, TX, USA, (March 25, 2016) Andreas Hanke. "Multiscale Modeling of Macromolecular Systems in Biology," Seminar, University of Texas at Brownsville, TX, USA, (November 21, 2014) Andreas Hanke. "Mysterious forces between ships in wavy waters," Monday Night Physics, University of Texas at Brownsville, TX, USA, (October 20, 2014) Andreas Hanke. "Multiscale Modeling of Macromolecular Systems in Biology," Seminar, University of Texas at Dallas, TX, USA, (January 21, 2014) Andreas Hanke. "Direct Free-Energy Calculations for Semiflexible Macromolecules: Applications to DNA Knotting and Looping," Seminar, Northeastern University, Boston, MA, USA, (September 10, 2013) Andreas Hanke. "Denaturation Transition of stretched DNA in the Presence of DNA-Binding Ligands," Topological Aspects of DNA Function and Protein Folding, Isaac Newton Institute for Mathematical Sciences, Cambridge University, Cambridge, UK, (September 4, 2012) Andreas Hanke. "Direct Free Energy Calculations of Polymer Models with Topological Constraints," Seminar, University of Texas at Brownsville, TX, USA, (July 27, 2012) Andreas Hanke. "Tiny machines and molecular motors," Monday Night Physics, University of Texas at Brownsville, TX, USA, (February 20, 2012) Andreas Hanke. "Direct Free-Energy Calculations for DNA Molecules under Topological Constraints," Seminar, University of Texas at Dallas, TX, USA, (June 24, 2011) Andreas Hanke. "Denaturation Transition of stretched DNA in the Presence of DNA-Binding Ligands," KITP Program: Biological Frontiers of Polymer and Soft Matter Physics, University of California at Santa Barbara, CA, USA, (May 10, 2011) Andreas Hanke. "Direct Free-Energy Calculations for DNA Molecules under Topological Constraints," Seminar, University of Iowa, IA, USA, (March 10, 2011) Andreas Hanke. "Non-equilibrium Casimir force between vibrating plates," Seminar, Max-Planck Institute of Complex Systems, Dresden, Germany, (October 22, 2010) Andreas Hanke. "Casimir Forces and Geometry in Nanomechanical Systems," Seminar, Rice University, TX, USA, (October 8, 2010) Andreas Hanke. "Denaturation Transition of stretched DNA in the Presence of DNA-Binding Ligands," Seminar, University of Texas at Dallas, TX, USA, (July 9, 2010) Andreas Hanke. "Design and Control of the Casimir Force in Nanomechanical Systems," Seminar, University of Houston, TX, USA, (March 4, 2010) TEACHING Courses Taught Generated on Dec 09, 2017 Page 4 of 6

5 Classical Mechanics Classical Mechanics I College Physics I Electromagnetic Theory Graduate Research I Mathematical Physics I Physical Sciences for Educators I Solid State Physics Special Topics in Physics Statistical Mechanics Statistical Mechanics - Audit Thermodynamics Thermodynamics and Kinetics of Biological Systems Thesis I Thesis II University Physics I University Physics II University Physics II Lab Non-Credit Instruction Seminar, UTB, 45. (October 20, 2014) Seminar, UTB, 42. (February 20, 2012) Seminar, UTB, 40. (October 26, 2009) Directed Student Learning Master's Thesis Committee Chair. Pawan Thapaliya,, Physics and Astronomy (UTB). (September 1, August 31, 2017) Master's Thesis Committee Chair. Ramin Salimi, "Molecular Dynamics Simulations of DNA Duplex Stretching", Physics and Astronomy (UTB). (August 4, 2017) Master's Thesis Committee Chair. Ramin Salimi,, Physics and Astronomy (UTB). (September 1, December 31, 2016) Master's Comprehensive Exam Committee Member. Alexandra Alvarez,, Physics and Astronomy (UTB). (April 28, 2016) Master's Thesis Committee Member. Liliana Diaz,, Physics and Astronomy (UTB). (July 8, 2014) Master's Comprehensive Exam Committee Member. Marco Milan,, Physics and Astronomy (UTB). Generated on Dec 09, 2017 Page 5 of 6

6 (April 18, 2012) SERVICE Department Service Committee Member, Peer Observation Committee. (September 1, August 31, 2018) Committee Member, Personnel Committee. (September 1, August 31, 2018) Committee Chair, Website Committee. (September 1, August 31, 2018) Committee Chair, Search Committees for Faculty Positions. (September 29, August 31, 2018) Committee Member, PhD Proposal Preparation Committee. (September 1, August 31, 2017) Committee Member, Biophysics Task Force. (September 1, September 1, 2016) Committee Member, Undergraduate Committee. (September 1, September 1, 2016) Professional Service Grant Evaluator, External, NSF, NIH (September 1, August 31, 2017) Reviewer, Journal Article. (September 1, August 31, 2017) Professional Memberships Biophysical Society (April 2004) American Physical Society (APS) (September 2001) Public Service Judge, RGV Regional Science & Engineering Fair, Brownsville, (February 10, February 11, 2017) Guest Speaker, Monday Night Physics, Brownsville, (October 20, 2014) Guest Speaker, Monday Night Physics, Brownsville, (February 20, 2012) Judge, RGV Regional Science & Engineering Fair, Brownsville, (March 4, March 5, 2011) Judge, RGV Regional Science & Engineering Fair, Brownsville, (March 5, March 6, 2010) Guest Speaker, Monday Night Physics, Brownsville, (October 26, 2009) Generated on Dec 09, 2017 Page 6 of 6